<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:29:09"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374886" ref_strand="+" ref_description="SGN-E374886 [TUS-15-O5](-)">
      <seq>agaaaatgacaaagcaagcacaaaaagaccggactccgttgatggctgatgaaaagcctgtgtttgtttaagagcaactagtaaagaaattcctgtacaccactttaaaattgaacttaatggtacagaaatactcgagaatggcttccgtcgtactcgtaagcttacctcctccacctttcaatcatcctgcaaccttttacatggaatacatggatttgctggttgaaaatataccaagacttttgattgttcgtggatatcataaaaatgttgtcactttattcacgtagttcttgttcatgtatttgtataattttttgttgctttagctaagaactcccaatttatttgccttttaacattttccttttttcttttactgcccttcacaaccaagaggggtttacaattgtataattctttatattaaggggcacactggaccaaaattttgctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="6741" stop="5683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6442" g_stop="5983" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="461" polyA_stop="481"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E374886" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6442" e_stop="5983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATGAAAGAGCAAGCACAGAGAGACCGGACTCCGTTGATGGCTGATGGAAAGCCTGTGTTTGTTGAAGAACAACAAGTAGAGAAATTCCTTTACACCACTCTAAAGCTGAACTTAATGGTACAGAAATACTCGAGAATGGCTTCCGTCGTGCTTGTAAGCTTACCTCCTCCACCTCTCAATCATCCTGCAACCTTCTACATGGAATACATGGATCTGCTGGTTGAAAATATACCAAGACTCTTGATTGTTCGTGGATATCATAAAGATGTTGTCACTTTATTCACGTAGTTCTTGTTCATGTACTTGTATAATTTTTTGTTGCTTTAGCTAAGAACTCCCAATTTATTTGCCTTTTAACATTTTCCTTTTTTCTTTTACTGCCCTTCACAACCAAGAGGGGTTTACAATTGTATAATTCTTTATATTAAGGGGCACACTGGACCAAAATTTTGCTA</genome_strand>
        <mrna_strand>AGAAAATGACAAAGCAAGCACAAAAAGACCGGACTCCGTTGATGGCTGATGAAAAGCCTGTGTTTGTTTAAGAGCAACTAGTAAAGAAATTCCTGTACACCACTTTAAAATTGAACTTAATGGTACAGAAATACTCGAGAATGGCTTCCGTCGTACTCGTAAGCTTACCTCCTCCACCTTTCAATCATCCTGCAACCTTTTACATGGAATACATGGATTTGCTGGTTGAAAATATACCAAGACTTTTGATTGTTCGTGGATATCATAAAAATGTTGTCACTTTATTCACGTAGTTCTTGTTCATGTATTTGTATAATTTTTTGTTGCTTTAGCTAAGAACTCCCAATTTATTTGCCTTTTAACATTTTCCTTTTTTCTTTTACTGCCCTTCACAACCAAGAGGGGTTTACAATTGTATAATTCTTTATATTAAGGGGCACACTGGACCAAAATTTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351129" ref_strand="+" ref_description="SGN-E351129 [cTOS-6-J22]">
      <seq>agagaccggactccgttgatggctgatggaaagcctgtgtttgttgaagagcaacaagtagagaaattcctgtacaccactctaaagctgaacttaatggtacagaaatactcgagaatggcttccgtcgtactcgtaagcttacctcctccacctctcaatcatcctgcaaccttctacatggaatacatggatctgctggttgaaaatataccaagactcttgattgttcgtggatatcataaagatgttgtcactttattcacgtagttcttgttcatgtatttgtataattttttgttgctttagctaagaactcccaatttatttgccttttaacattttccttttttcttttactgcccttcacaaccaagaggggtttacaattgtataattctttatattaaggggcacactggaccaaaattttgctagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="6719" stop="5674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6419" g_stop="5983" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="439" polyA_stop="449"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E351129" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6419" e_stop="5983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGACCGGACTCCGTTGATGGCTGATGGAAAGCCTGTGTTTGTTGAAGAACAACAAGTAGAGAAATTCCTTTACACCACTCTAAAGCTGAACTTAATGGTACAGAAATACTCGAGAATGGCTTCCGTCGTGCTTGTAAGCTTACCTCCTCCACCTCTCAATCATCCTGCAACCTTCTACATGGAATACATGGATCTGCTGGTTGAAAATATACCAAGACTCTTGATTGTTCGTGGATATCATAAAGATGTTGTCACTTTATTCACGTAGTTCTTGTTCATGTACTTGTATAATTTTTTGTTGCTTTAGCTAAGAACTCCCAATTTATTTGCCTTTTAACATTTTCCTTTTTTCTTTTACTGCCCTTCACAACCAAGAGGGGTTTACAATTGTATAATTCTTTATATTAAGGGGCACACTGGACCAAAATTTTGCTA</genome_strand>
        <mrna_strand>AGAGACCGGACTCCGTTGATGGCTGATGGAAAGCCTGTGTTTGTTGAAGAGCAACAAGTAGAGAAATTCCTGTACACCACTCTAAAGCTGAACTTAATGGTACAGAAATACTCGAGAATGGCTTCCGTCGTACTCGTAAGCTTACCTCCTCCACCTCTCAATCATCCTGCAACCTTCTACATGGAATACATGGATCTGCTGGTTGAAAATATACCAAGACTCTTGATTGTTCGTGGATATCATAAAGATGTTGTCACTTTATTCACGTAGTTCTTGTTCATGTATTTGTATAATTTTTTGTTGCTTTAGCTAAGAACTCCCAATTTATTTGCCTTTTAACATTTTCCTTTTTTCTTTTACTGCCCTTCACAACCAAGAGGGGTTTACAATTGTATAATTCTTTATATTAAGGGGCACACTGGACCAAAATTTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357069" ref_strand="+" ref_description="SGN-E357069 [cTOS-22-B7]">
      <seq>agaccggactccgttgatggctgatggaaagcctgtgtttgttgaagagcaacaagtagagaaattcctgtacaccactctaaagctgaacttaatggtacagaaatactcgagaatggcttccgtcgtactcgtaagcttacctcctccacctctcaatcatcctgcaaccttctacatggaatacatggatctgctggttgaaaatataccaagactcttgattgttcgtggatatcataaagatgttgtcactttattcacgtagttcttgttcatgtatttgtataattttttgttgctttagctaagaactcccaatttatttgccttttaacattttccttttttcttttactgcccttcacaaccaagaggggtttacaattgtataattctttatattaaggggcacactggaccaaaattttgctagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="6717" stop="5674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6417" g_stop="5983" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="437" polyA_stop="447"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E357069" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6417" e_stop="5983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACCGGACTCCGTTGATGGCTGATGGAAAGCCTGTGTTTGTTGAAGAACAACAAGTAGAGAAATTCCTTTACACCACTCTAAAGCTGAACTTAATGGTACAGAAATACTCGAGAATGGCTTCCGTCGTGCTTGTAAGCTTACCTCCTCCACCTCTCAATCATCCTGCAACCTTCTACATGGAATACATGGATCTGCTGGTTGAAAATATACCAAGACTCTTGATTGTTCGTGGATATCATAAAGATGTTGTCACTTTATTCACGTAGTTCTTGTTCATGTACTTGTATAATTTTTTGTTGCTTTAGCTAAGAACTCCCAATTTATTTGCCTTTTAACATTTTCCTTTTTTCTTTTACTGCCCTTCACAACCAAGAGGGGTTTACAATTGTATAATTCTTTATATTAAGGGGCACACTGGACCAAAATTTTGCTA</genome_strand>
        <mrna_strand>AGACCGGACTCCGTTGATGGCTGATGGAAAGCCTGTGTTTGTTGAAGAGCAACAAGTAGAGAAATTCCTGTACACCACTCTAAAGCTGAACTTAATGGTACAGAAATACTCGAGAATGGCTTCCGTCGTACTCGTAAGCTTACCTCCTCCACCTCTCAATCATCCTGCAACCTTCTACATGGAATACATGGATCTGCTGGTTGAAAATATACCAAGACTCTTGATTGTTCGTGGATATCATAAAGATGTTGTCACTTTATTCACGTAGTTCTTGTTCATGTATTTGTATAATTTTTTGTTGCTTTAGCTAAGAACTCCCAATTTATTTGCCTTTTAACATTTTCCTTTTTTCTTTTACTGCCCTTCACAACCAAGAGGGGTTTACAATTGTATAATTCTTTATATTAAGGGGCACACTGGACCAAAATTTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343800" ref_strand="+" ref_description="SGN-E343800 [cTOF-12-K7]">
      <seq>tgaatcgcagcttaaaaaccccttttctcgcggttaacactttccggtttgggtagttcagacttgactgctttgaattcgggaggcaatggaaggtggagaagagattgagattgcggaggaaaatgagttcccttcagttattggacgaaaatacagtccagtggtggcgcatgacaatgatagtgcagttattgagatgtcttctgttcgtcccggatcttcctcttctctccccaaccacgatctcaagaacgtcaaagtaggtgtccatccaaatatggcatctgaagaaagagacgagtcattatccaatcatagtagcaatggtcctcaaagagaatccaaactggaattatttggctttgattctctagtaaatattctaggtctcaagagtatgacaggggatcaaattcccgcaccgtctagtccaagagatggtgaggatataactctcacgcttgagcaacctaagctgaacttaatggtacagaaatactcgagaatggcttccgtcgtactcgtaagcttacctcctccacctctcaatcatcctgcaaccttctacatggaatacatggatcntgctggttgaaaatataccaagactcttgattgttcgtggatatcataaagatgttgtcactntattcacgtagttcttgttcatgtatttgtataattntttgttgctttagctaagaactcccaatttatttgccttttaacattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="22455" stop="5774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22155" g_stop="21904" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21903" i_stop="19949" i_length="1955">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19948" g_stop="19802" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="399" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19801" i_stop="17767" i_length="2035">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17766" g_stop="17688" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="478" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17687" i_stop="6333" i_length="11355">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6332" g_stop="6074" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="738" r_length="260" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E343800" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22155" e_stop="21904"/>
          <exon e_start="19948" e_stop="19802"/>
          <exon e_start="17766" e_stop="17688"/>
          <exon e_start="6332" e_stop="6074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATCGCAGCTTAAAAACCCCTTTTCTCGCGGTTAACACTTTCCGGTTTGGGTAGTTCAGACTTGACTGCTTTGAATTCGGGAGGCAATGGAAGGTGGAGAAGAGATTGAGATTGCGGAGGAAAATGAGTTCCCTTCAGTTATTGGACGAAAATACAGTCCAGTGGTGGCGCATGACAATGATAGTGCAGTTATTGAGATGTCTTCTGTTCGTCCCGGATCTTCCTCTTCTCTCCCCAACCACGATCTCAAGTATTTTCTCTTTCTCTATGTTTTCTCGTTTTGACTAGTATTGACTAGTAGTGTACTAATAGCTCTGGGATTTGATGGCACTGAATTATGAAATTTTTTACTTTGTTTTTTTTAAGCATTTAAGAATTTGAGAACAATTAATAGAGACCGTAAGTATTGATGTTAAATTTATGTCTGAGCTTACTTCTAAGTGTGGATTTGGGTCAACATTTCTTCCATTTATCATGTCTATTGTTTTCCACTTTGGTTGTTAGTTAGGTATGAAAGAAATTGTTTTTCATGAAAATATTTTCTAAGAAAATGAGTTTTTTTTTTTGGTATTATATACAGCAAAAAGTATTATCTTGAAAGTGTTTTAATCTAGACAAATACTATATGGAGTTGGGGGTGGAGAGTGATGGATGGGGATGGGAGCTATGGGGAAGGGGTGAAGATGAGGTGAGTTGGAAGCTGAGAAGGAAACAATCTTGTGAAACTTGTTTTTCCTACTTTTATTGGGGAAGTCATTTTCCTTCTTTGTTTTTTCTTTTATAAAGAAAATGTTTTCAAAAATACTAACGAACCAAACATAGGAAAATTGGAAAATATTTTCGTCTGTACCGAGCACATCCTCAATGTACATAGTTTGTCTTTGCCATGGTTTGGACATTGTTTTGTAGGTAAATGGGTCAGTGGAAATACTACTGAAATCTATGGTTAGGCTTTCATATTAGTATAATTACTTGAATGTTGTGGAACTATTTTCTCATCCATCCTCTCACTTATGTTTTGAAACTTCAAGGGCATAAAAGATTAACAATTTGACTCAAAGTCAATTCTCCTAATAAACTTTGATGAATTTGAAATATTAAGTATCTCTATTTAAATGTTGAGTATGTTAAATATTTCATTAGTATTACTTATAAAAAAGTTGCATTAATATGTACAAAGATTTTTTTTATTTTGAAATTGGCAACATGTTATATTCATCAACACCCCAAAAGGCCTGGTATATCATATCTACAAATACAGGCCTGGACAAAAACAAATATTTCATTAGTATTACTTATAAAAAAGTTGCATTAATATGTACAAAATATTCATCAACATCCCAAAAGGCCTGGTATATCATATCTACAAATACAGGCCTGGACAAAAACATACAAAGAGGCCAAGAAGTCTAGTAATGATTCTGCATCATCTACTAGCTGTTCTTAACACCAAAAATAAAAAAGAGAAATGCAGGAACTCCTGGTCTTCTGTATTGAACTGCTCTTGCTCTCGAAACATTTTGCATTCCTTTATTTCCAAATTGTACACCATATGCAAAGAGTATTGGCTCAATTGGAAATAGTGACATTCATCTATCAGTTATTTATCAACTAAATATACTAGTTCGGATTTGCTTCATTTGTGCGTTGTGAAGTAGATGCTGGTTCTCTCTGGGAATGCGAAACAAAAAAGCTTCATGATAAACTAGACCCAGTAGCTTCCATTTGATAACTCACATTTTAACTCTTTGATACTCTCTTAATGGAAGTGCTTACTTTCTTCGATCGCTCGAACATTATCACTTAGGGTTAAGAATATCTCAAAGCTTGCCTATGGATATACTTTTGGATGTTTGATAGCTTTCTCTACAAGTTTACAAGTTAATGTTTTAGATATTCTCTGCTCCTTGACCCCCCCCGACTATGTTTAAAAATTTAATATTTGTACACATTTAGTGAATTCTTTATTCATGCATGGTTTGAGCCAATACTACTGGTTCGGCTGTACCACTAGCTATTACTATAGATCCGTCCATGGTGCTCAACTGCTTACTCACATGCTCCAATACATTGGCTACATCCGCATGCCCACCATATTTTTTAATATTAAAGGGTTTGCAGATATCTAGACAAGAATTTTGTTTTGTCCCTTTCTTTTCTCTGGGAAATCATTTCAACCTTTATTCTGATTACACCATTTTTCAGGAACGTCAAAGTAGGTGTCCATCCAAATATGGCATCTGAAGAAAGAGACGAGTCATTATCCAATCATAGTAGCAATGGTCCTCAAAGAGAATCCAAACTGGAATTATTTGGCTTTGATTCTCTAGTAAATATTCTAGGTCTCAAGAGGTAAGAGGTACAAATTCTATGTCTCTTTTGTTTTATTTTCCACAAACTTCTATTCGCTGGTATGATATATTTCAGGAAACTCGTTTTTGCTCTCGTCATTTTTTACTTAATAACTTTCTTGAGATAGTTGCATTTTGACATCATTGGAGTAAATTTTAAGTTTTCTGGTGGGCAATGCAAATCAAAGTCAAGACACCAAAGCTCTTCCGTCTATCTAGAACGTACTTATAGTGCTTCCGGCTACCATCTCTGTTAGTCCAGCATGCTTTCCTCTCAGCAACGTTTCCTCCAAATTTCGTATATCTTTTACTTTCTTAGTCATATTGGGCTCTCAAAACTTTATCTGCGGATTTTCTTTAAGTGATTATTTGAGTTTCCTCATTTGAAGGTTAAATTTTTGATATACAAAGTATTCTTTCTAGCTAGAAAGCAACTAAAAATGTACATCAATAGTTTTTGATCACATTCTTGTACATATTTTGGTAGGGTAAATTTTTGTGTTTTTACTCATATTTCCTGTTATTCATTTTTATTGTCAAGACTCAAAATGGAGAGGAGAATGTTCTTTTCCTAGTTGAAATCGTGCGAGATTTTAGAAGGCAATGCATGTAGATTCAATTGGTCTGAAAGAAGAATAAATTTTGTTAATAAAATAAATTTAGGATGCAGAAATTTGTTGGGTTTCTGAACGCACTGAGATCAGTCAACATCTAATTCCATTCAAAAAATAAATGGAAATGCATTGTATCTCTATTTTTTTTGGTGCAAAGAGCAGTGTATAGAGGACATAGACCAACTTGTTGATTTGTTAGGAACTTTGTTACTTTTTTTAGTACCCTTAATGCTAGGGATACAATTTACCAGTTTCACAAAACAAAACAAAATATGAATACAACAATTTATCAAAGCATATGCAGTGTATAACTAACTCGGAGCTCAACAGGTTTTAAACTGTACTTGCGAATGAGGTTTATGCTCAACAAGTGTCAAAACTCAGCCAATGCATGCTAATCTATTCAAATAATAGTTCATGGTGTCAAATACACCCAAACAACTTACTACTGAACTTGGCTGGTTTGCTTTATGTGGCTGGTTACAAACAGTTCATGCGTCACTCAACACAACTTTTCGGAAAGAGGGTTATTTATATGCAGTAGGTGTTTCTCTACCTTCACAAGGTAGGGAAAAGGCTGCGTACACATGACCATCCTCAGAGCCCACTTGTGGGATTACACTAGGTATTATGTTGTTGTTATAGTAGGTATCTCCCGTGCAGCAGTGAGGAAGCAAACTGTGACCCCCCTCTTCTTCAATGCCTAGTGGCAGATGAAATACCATCACTATATCGTAATATATTCAGGATACCTTTTGTTATGGCATGCACAGTAAGGGAGCTATTTACCAGCTGGGTTTTGGGGGAATTAGAATATCATCTAGGAAGGTTTGGAACACAGTGCATGCTTGTGTTTGTTGGGTATTGTGGAAGGGAATGAATACCAGATGTTTCAAAGGGAAACGAGGGTGGTTTCAAGACCTAGCAGGCTCTTATTTCTGTTGATTAAGATGATGAGATCAAATATAATAGATAGTTATCCTGGCCAAGAATGTGTCTGATCGCACCCTAGTTAAGAAAAAGCCATGGAGTCTACTGTAAGGAAAATGAACTAAAAAGAAAGTAGATTATGGTTTACTATCCAAGCTTGCTTGCTTTAGGTAATTTGGACAGACAGGAGTCAATCCTAATGGAAAAGCAGAGTCATCTGGTAGATTTTGATACAAATGTTCTTTTTATGGTCGTTTTGGTTTAACATTCTGGATGTATATGGTTTAGAGTTTTATTTTGGTTGCAAAGCTCCGCTTTTGTTTTGTGGGAGACTGGATTTTGTACTGCAGTGTTCTTCCACCTCTTGTTTGCTTTTTGTATAAAATAAATTGTTTACTTGTCCAAAAAAATGTCCTTAACAACTACTTTCTAACTTCAGTTTTCTCTCAATTTTGTGGTTTTATAATGTTCTTATCAATCTTGTTGTTCCAGTATGACAGGGGATCAAATTCCCGCACCGTCTAGTCCAAGAGATGGTGAGGATATAACTCTCACGCTTGAGCAACCTAAGGTACTTGAACTAATTTGTTGAGCATCGTTTTATTTCCCTGAAGCTTTCCGTGCCATGCACAATTAAGACTGTATCATGTTCATAGAAGTCCTGAAGTAGAATTCACTTTCTTGATTCCCGTGGATTCATTTTCATCTCCTATGCCTATACCTAGTGGGAAAAATTGGGGACTTCCCTTTTCTGAATAAATAGTAAAGGACAGTAGGCTATATAGGGCTGTAAAATGGAGGTTATAAGAAGACAACAGTATGTAATACTTAAGGTTTTCGACTTAGAGTGTCACTATATAATTGTCAACTTTTAATCACACCATTCCAAATTCATTCTTTTATAAAAGTGTTAACATGCAATTACTCCCATTTTCTTGTGAGAGAATTTCCTTCTTATTGATTTATGAACATATTCGAGGTGATTTAAACTTCCTTTTCAAAAAAAAGGAAGAAAACGTTGGAGGTAATTTAGATGTCCTTATATAAGAAAAAAACATATTGGAGGTAATTTAAACTTTAAAAGCTGGTTCTTTTGATCCCTGATATAATACAAAGTTACCATTTTTTTTTAAAGAAGAAGCTGTTTCGTTATGATAGCTAGGATCTTTTCCAGTAATGTGGGAAACAAGTGGAGAAAAGAAACAGGATATCTTTAGTTTAGCTGTTCCTAGGTTTAGATTAATGTTTAAGTTGTTTAGCTGAGCAGTAGTTTGCTAGTTTTTTCATTTTTTCTACAATTCTGTGGAGAATTTATCTTAGGTTTAGATTAATGTTTAAGTTGTTTAGGAGCAGTAGTTTGCTAGTTTTTTCATTTTTTCTACAATTCTGTGGAGAATTTATCTTAGGTAAGTTATCTTTTGTTTCCCTGGATATCTGTAATCCTATTTGTCTTAGGAGTTCAGTTATAATTCAAACAATTAGTTTTATCCTTATTAGAAAAGGATTTTAGTCAGCTCATGAAAAAATATTCATATGGTGTTTAATTCTGTATGGGGAATTTTATTTTGATCTCCCAATGGTTTTCGCAGAACCTTTTATTGCTTATTTGGTGCTTTATGCAACCTTAACTGAGGAGGTTATTCCTAGGTAATTCTAGCTTCTTTGGTTTACTGCTTTATTTCATAGGTGCTTGAATGCTAATGGTTGGTGAATCCCCTCTATCCTCCACCAGCTATTGTTGGCTCACACTGAACTTCCTTAAAACCATTCTAGATTTAAATACATAGCTACTGCTTAGTTCTTTTTTGTCATCCCTCTATCAATCAGCCATTTGTCTCACACTGACTTCCTAAAGATTATTCCAGCTTTAGATATGTTGATAACTATGTTGTTGCATTATTCTTTATCTTGTAAAGAAGAAAGTGTGACTCACATGTTTGTTTCCAATAAGAGAGGATAGATGTGGAACTTGTTGATGAGCTTTAGATATGCAGCTAATTGCTTAGTTGCACTGTTCATTCTCTTGCAAAGAAAATGAGAGTGACTGTCAGATGTTTGTTTCCACAGAGAAAACATAGCTGTGAATTTTGTTGATGTATTCATGGTTTCATTGATGCTTGATCATTGTGGTTGGCATGCTTCCTCTGCGGACACCATTTTTCCTAAATAAACAAGCTGAGCTTTTAGATTTTATTGCAAAGAGGAAGATGTTGTAATCAAAAGAGAATAATAGAACACGCATAAATGAGTAACGATATGAGTGTTATCATACATCACTTTAATGACAACAAGGCCCCTAAAGGCATCTTTGATTTAGCTAACCATCTCTTATCATCACTCAGATTTGTTTCTAAAAGTAATTTTAATATTGTTTCTAAAATTCTAAGTGATCGAAACATCATAGGTTTCTTGTCCTAAAAAATAAAAAAACTGATTGGGGAGGGTCGCAAGCCTCTTAATCACACTATCAAGAAATAGAAAAAATAGCTTGAACTAAGAAACTCACGGGAAGAGGTATTTACTGATTGGATGACGAGATTCTTCTTATGTTGTGCTCAAACGAGGATTTTTGGCCTTGTGGTATTGGTATATAAACCCTTGCAGAATTCAAGAAAGACTCGAACAGATGTAACGGTCACAACAGGTCCCAATGCTTCTTTCCCCGGACGTTGTTGGTGAATGCACAAGGAGTAGTTTCTTAGAAAGACTTTGATATCATGTGAGGAAGAAGTTCTTTTGCTGCTTTTACTAGCTTGCTTTGATATCAGATGATTTTTTTTTTGTTTCAGAAATGGAAATCTCTGCATCCTACTATAGTGAAACACAAAATTTTGAACATTGTTATAACTTATAGGTTATCTACCCTCTCTCTTGCGTGTTTCCCTCCGATTCTAGCTTCTTTTGCTGATGTTTATTTATGGAGTTACTTTTTCCTGCTAAATACTGAACACAATGCAATATAGAGTTGTATATATCTGCAGTTTCTAGTTCAATCTTCACTTAATTTCAACTTGTTATCTCCTATGCTGTCAATTTGTCTTATAACCTTCACATGTTCTTTTATCTTGTGTGTCAACATTTGAAAATAAGACTTTGACAATGCTTGGACGTACCTGGATAGTTAATTTTTGTATTGATGGGTTGCTTAAAGAAGCTCTTGAGTGCATTTTAATCATCTCTATATGTGAATTTTTTGAAGCCAACTGCTGATAAATCTGGCACGCTGATGGGAGTGTTTATGCCATGCTTGCAAAATATTTTGGGGATCATCTACTACATTAGATTTTCGTGGTAAGTTTGCTTACTATCTAATGTATCATGTGATTTATATCAAACTCTTTTTTGGTTAAAGTTTCATGTCTTAATAAAAGTGGACTGGTTCTGTATTCCTAAACGGGCACCTCAAGGACTATGGTGAACCTGCTTTTCAGTTTCAATACTACACATTTTGCATGTTATACTTGCATCTTGCTGGTTTCTCTTACTATATGGAAGTTTGGTGGGTGATGTTCAAGCAATTTAGTCTACATTACTATAGTACCAATCAGCTCTTCTCGTTACTCCAGAAAGGCGTGGTTATACTGGTATCATGAAATACTCAAACTGATCTGCTCCTGCCCCCACCTTTGACATTTTCTAATATAGAAATTAATTACTGTGAGTAGAGATAGAAGGGGAGAAAAGTTATCTTCAGGTAAGATAAGGAAGTGAAAAGGAACAGGAGAAGGGAACAATGAACAAATGCACCCACTACCTATGATCTACTACTGTTAGTTTGATGATATCCTTTTTCGCTCCAACTCAAATAACCACTCTATTTGTGTTGGTTTGTTTTTGTGTATACTGCAGGATTGTTGGTATGGCAGGCATTGGCGAGTCATTGTTGCTGGTTGTGTTCTGTGGATCATGTACATTCCTGACCACGATATCATTAAGTGCTATTGCAAGCAATGGTGCCATGAAGGTGGGAAAAAAATCATCAGATACAACTTCTGTGCAGATTAAAAGGATAGATTTTTAATTTCGTTTCCAGTATAACAAGCTTGCTTTGATATGTGTATCTCTGTTGCCCAGCATTGGCTAGACAATAATATGGATGAATTCTGTGTCTGTCATTCCACCTTATGTAAAAGCTCAACCCGTTAGAGAGAGCATACTTTTAATTACTTAACTATGTGTTTCAACGATCTCCTTGTAGCTTATTTGTTAAGTGATATCCTAGATTTGTTTTCTCTAATCTAGGGTGGTGGCCCTTACTATCTCATTGGTCGTGCATTGGGTCCAGAAGTTGGTGTCAGCATTGGGCTCTGTTTTTTCCTTGGGAATGCAATTGCTGGTGCAATGTGAGTATACATCTGATGTTATATTTTTGTGTGAAGGAACTACTTACTTAGCTGGGGTGTGGGGGTGTGGGTGGGGGTGGGTGGGTGGGTGTGTATGCCAATGTAGGTTAAGTTGCTTCATTATTTCAAACTATCTACAAAAAGATTTTGTGTTGATGCCTGCTCTTATATGTTCCTGCCGGTTAGGTATGTACTGGGAGCCGTAGAGACTTTTCTAAATGCTGTACCAAGTGCGGGCATCTTTAGAGGTATTCCTTAAATGAGATTGAACTTTTATGATTTAGAAAATGGCTTGGTGTTGTCTGTACTTCTACGGTAAAACCATCTGATATCCTTCTGGCTTTATCATAACATTGATACAAGTAACTTATTGTTGATTTTTGATGGATAGTACTGTATTATTTTCAAATTCATTTGTATATCTGAACTTCATTTGTCATCAATGCAGAAACTATCACACGAGTTAATGGCACAGATATTGCAGAGCCCATTACAAGTCCAAGTTTGCATGACCTGCAAATTTATGGGATTGTTGTATCTATTCTTCTCTGCTTTGTCGTGTTTGGTGGAGTAAAAATGATCAATCGCGTTGCACCTGCATTTCTTGTCCCTGTTTTGTTCTCATTGCTTTGCATATTTGTCGGCATCTTTTCTGCGAGGCATGATCATCCAGCAGGTTTATGTTGTCTATGCCTTATTCTTATTCTTTCCTGTCTTACTTGAGAGTTTTTTTTAAAACTGTGTGTTATTCTTATGTGCTATACACTTCCCTTGCATACTCCCTCTGTTTCATTTTAGGTGACTTACATTTTTTAATTTGTTTCGGAAAGAATAACTACTTTCTTGGTTTGGAAATTCTGTAACTTTAAACTTCCTATTTTACTATTAATTACATTCTCTTATTGTTGAAAATTGTCCTAACATGTTCAAGACCACGAATTCTCAAGTACTTTTGGTATGTGACAAAAGTTTTACTTTCTTTCTTAAATTTCTTGCCTAGTCAAACACTACATTCATCAGCTTTCGCTCTGTTAGTGGAGTCTATAGTGTACTGGTATTATTGAAATGGTTTTTAGTTCTTGATCTTAATTTGGTATCTCAACCTCGTTTATTTTCACTATTTTATGTTGCTTTAGTGATGAGCCTTCAGTAGTTCATACACCAATCTAGTTAATTTTATTAGCTTGAGGTCATCATGGAGTATAGTAAAGTCAAACATTGTTGTTTCTTTCCTTTGAACAAATTGCATCTTTGAAGCCATATATGGAAGTCAAGGGCTACATATTATTGATGATAAGCTGTAGAATACCAATTAATTACTGGTTTTGCTAATAAGAATAATGATTCTGAAGAACTATGAATCCAGGCAAAATATAGCTAACTTGGAAAGGCAATCAAGTAACATCAAAATCGTAAAACCACTACAAAAGAACTAGAGAAAGTTACCCAAAAGTAGTATAAAGTAAAGTAAAGATGGGTTCCTGTGTCATGATATCTCGAGGACTGGTGTAAAGTAAAGATGATTTAATTTTTGTGAATTATCTCTTTATTGATGGATATAGAAGATTCATATGGTCAATCCCAGAGGTATTTGCAAAAGTGTTACGTATGTCTGTTCTCCCTGAAGTTTTAATACTCATGGTTGTCATTTCTCATGTGACACCACCTTTTTACTCTGTTGCTATGCATGGTACAGTGGGGATCACAGGGTTGAGTTTGGAATCTTTCAAAAACAACTGGGGGTCTGCTTATCAGATGACTAATAATGCTGGAATTCCAGATCCCAATGGCGACATATACTGGAATTTTAAGTAAGTCATACAATTATTTTTGTTGGTTCCTTTATTTTGCACCATCTTTTTGCTAGGATTAGTTATTTGTTCTTCTTTCTGCCGTTTACTTCAATGTGCATACTGAAAGCATTTAGAACCAAGTCTTAACATTTATTTCCTTCTCCATGTTAGTGCATTGGTAGGTCTCTTCTTCCCTGCTGTAACTGGGATCATGGCAGGTTCGAACCGTTCGGCATCTCTAAAGGACACTCAACGTGCAATTCCTGTTGGGACCTTAGCTGCAACTTTGACTACCACCAGTTTATATCTGGTTTCTGTGCTACTATTCGGAGCTGTTGCAACTAGAGATAAGCTTTTGACTGATAGGTAATATGAACTTATGAAGTACTTTATGATACATTATCATACTTCTGGTACTGTCCTTGTTCCTATCTACACATTGCAGTTTTGAGTGATGAGGTTATTTAAATTGAGTGTTGGGTATAATTGGTCGAGAAAGATATAGTAACAACAACTCTAAGTCAACTCCAAGCAAGTTGAGATCTCCATATGGATCCTGGGCCCTCTTTAGCCATGTCACTCCATGTAGTGCAATTTTCTAACTTTATTTTAAATTAAGTTGGGCTGGCTGGGTGGGGAGTGGGTTAAAAGTCTTAAGATACCTCTTCTTCTATAGTGGAATCATCAAAATACTAAGATACTTTATTTCTTTTAGAAGTTCTAAAACTCGGTTTAGCGCTTGATGTGAGATACTTTTAAGAGGAACACCTCTCTATAGTCTCTCCATTTTTGGGAAAGGAAAAAGAGGAAGGTATGAGGTGAGGAAGTTAAAAAAAAAAGGAAAGGTAAAGGTTATTTCCCTTTACGCAGCAGTTGCAAATGATGACATTCTACCTGAAACTGCATCTAACTGATTATTTGAGGATGCTTAATGGTATTTAGTTCACTATCAATAAAATTTAAATTGGTATTCACTGCATTACTAAAACTATTTGTGCAGGTTATTATCTGCTACAGTTGCCTGGCCATTTCCGGCTATTGTTTATGTTGGTATAATCCTCTCAACCTTGGGGGCAGCCCTTCAAAGCCTTACTGGTGCTCCACGTCTCCTTGCAGCGATTGCAAATGATGAAATTCTACCTGTTCTTAACTATTTTAAAGTGGCAGATGGACATGAGCCTCATGTGGCTACTCTCTTCACTGCCATCATCTGCATTGGTTGTGTTGTAATCGGGAATCTAGATCTTGTCTCACCTACTACAACAATGTTTTACCTCGTATGCTATGCTGGCGTGAACTTATCCTGCTTCCTTCTGGATCTGTTAGATGCTCCCAGCTGGCGACCTCGGTGGAAATTTCACCACTGGAGCCTCTCTCTTGTTGGAGCATTACTTTGTATAGGTATCTTCTTAGCTGCAGCTGTTGTACAATAGTTATATTTTCTTAATTATGGATAATATAGATGGAAACAACTAAATCATTAATCCTAATGGGGATTTCATTGACTGTGTTAAGGGCCTCCAAAGGATTTCTATAAGAGTTTTGGTTTGCTTTGACCCCTTTGACTTAAATATTATGAAGAAAGTTCAATTCTAAGCTATTTACTGGTCGAAGATTATGGATTATCTCAATTTATAAGTTTCAAACAACTTTATTCTTTCGACCACGGACCACCTAAAAAGTTTCTCTTTGAATTTTTTTTCCCGTCTTAGCATTTCATGATCATCTGAAATGTTCATGTTTTTTTCAAACCCCCCCTTCTTTTTTCTGGATACATATGCTAATCAAATGTCCCTATGGTCATTGTCACTTCCATACTTTTTTTAACTACAAGTAGGTCATTTTGATGATCCAAATAAATTAGACAGGGATCTTATTTATATCCTCATAGCTCTTCCTTCCTTTACTACTTTTATTTTGTGGTGTTTATTCTATCCTTTTCTCTTCTATTTGTCATGTGTGATACTGCCGGAGTCCTGCTCATCCTTTTTATTTGAGAACCTTGTGAAATGACCTTGTTGCTCTCCCTTTCTGCCTCATATACTGTAGCATTTGGGCTGGCTTCAACAGATTTTATTATGTATTAAAACATTTAAATGTCATTCTTGCTTGGGTAAATCCTTGCCAGGAGAAGATAATTCATTCTGTTGAGTGGCACTTCCCAGATTATCAAATCTTCATCATGTTGTGGCCTTCATTTGCTAAACTTGACTTTGCACCCCTGCTACCCTATCCTAAAATTGATTTAATAGTGAAGACACTCTAGTTTGCTTTCCTATGATTTATCCTATATTTGCACTTTTTATTGTGAAGTTGGCTAGAGTAGGCGCTATAGACAAGCTACAGAGGTAGTCACCATACCTTGAAATCAATGTTTTCACTCATCTGATTTGTTTTCTTTTCTACTGTTCATTTACAGTGACCATGTTTTTGATTTCCTGGGCATTCACCATTGTATCACTTGCCCTAGCAAGCCTCATATATTATTACGTTAGTATAAAGGGGAAAGCAGGAGACTGGGGTGACGGTTTTAAGAGTGCGTATTTTCAGCTTGCTCTTCGCAGTTTGCGATCTTTGGGAGGTATGTATGAGTATCTTTTTATAGTTTACACAGCTCACATTCTTTTGTACTGCTCTTTTCTTGTTTTCTCAGAACTCCCTGTTTCCTCCCATGTGTCATCTATATTTGGGCAAGATTGAGTGAGGGAAATACAAAAGCTAAGATTTTCACTGAAGGGGCCATAATGTACTCATTGTGATAGTTTTTTTTCCTATTAGTTTATGAGAAATTTTGTTACGTGTCCAGATCGTTATGTTGCATTTTTGTTCCATTTGATATAAAAATTCAAAATTTTACGAGAGAAATATGAAAGGACATCATTATCAAAATAAGAAATATGAAAGGACATGTGAAACTCTCACCACCTCTCATTTAATTGTTGATAGAGTTAGGGCAATTGTGGTAATTTGCAGTTTTCATATACTCCCTTTGTCCAACAGAAGTTATCCACTATACTATTTTAGGATGTCCAACAATACTTGCCCACTTTATGAAATCAATGGATAATTTTTCACTTACTTCCTGCTTTACCCTTATCACTAATTATAGTCATTTCCCTATTAGATTTTTCAAGACACTGTTTTTATTATATTCAAAGGGTATTATAGTAAAATTACTCTTCTATTAATAGTTTCTTAAGAAGTGTGCAAAGTCAATAGTAAACAAGTATTGTTGGACAGAGGGAGTACGTTGCTTATGAGTTAAAAATCTGAAACTGTGTGACCTTGGGTCACTTACTTTGTAGTGGTTATTCCTCTCTAACAAAAATTCAATTACAGTAAAATCCCATTGCCCTGGTTCATATTATAATTAACTTGTATTACCTACTATATGGAGGTACATATAAGCTTAAAAAAAGAAACAAAAATAAAATATCCCTTTTGTCACCACCGCTAAACCAAAAGAATAGAATTTATTTTGTGGAAATTATATTTTTCAATTAAGTGGAGTCTCCATTTAACATCTCTTTATGTGGTTAATCTTTCACCCAAAAAACATTCTAGGAAAACTGTACTTTCTGATCGAAGAACTTTGAGAGGTTTCAGAAATAATATAGCTCGTAATTTTAACAAGAAAACGAGCAATGCCACAATAACAGGAAAAAAGAAATATTAGTGATTAAACAGGAGCATAGATGTCTTTTTTATGGGTATAGTTTGTGCTGTAAAGTAAGGAAAGGAGCCTTATGTGCGCATATTAGAGCAAGAAGGGGTATTATTGTATGTAATGTTGCTAAAGTAAATAATTAGTACCTGTAGTTTAGCCAACATTATATCCCTCTTTAGCTGAGGTACAAAAGAGTTGGAGGCCTAAATTTGTGAAAAAAATTCTGGCTATGGTGGGACCACTTATACTATAATATACCAATGATATATCTATTTTGGAGATGGTGATCATTTTGTTACTTATCTGTTTGTGCTCTAAAATTCTTGTTCGTTGTGCGATTGTATGAAGTCTAGTTAGCTAATTAGCAGCGTGAAGATTAGATGACTTTTATGTTATATGTACAGGCATGGCTTATTTATTGGTTACTCCCTGTAGAATTCTGAATCATGGATTTTGGCATCATACAATTTCTGTCTATGAAATTAATGAATTAGCACCTTTTAAAAAGATTTAAGTGTCTGTTTGAGTTATTCTTGAGCCATTTCTGTTCTTCACGTAGACACTGCTTGGTCGGTCCTACTGCTATGTAGTGTGCAAATGAACTTCTAAGATTGATTAGCTGAATGTGATATAATATAAGTTTTAGGGTAAGTACATCGTCAATCCCTTGAATCTGCTAATAAATATCATTTAGACACTCGGAACAATGACATGTTCCAATTGAGCACCTAAACACATGGTAAAGTGTTCCTATAAGATATCTCCGGCTCATTTTAAAAAGTTTCTACATGTGTTCACAAACATCCATTATGTAGATAAGTTAATCACATAAAGTGTGCATCCTTTTTTAATTATCCATATCAACATCGATGAGAATTGCATAAGGAATGTGTGAATATATTGGCTATTATTTGATTAAAAATGGAAAATAATGTGTATGAATATATTGGCTATTACTTGATTAAAAAGTAATAATAGGTACAGACTTTAAATGGCAAACCTTCTTTTATTCTTCACTTTTTGTATGGTTATTGGAATAGACTGAATCACTAGAAATTCACATACTTCCCTCGAGTACTTTAATGTATTAAGTTATTAATTGTACAAAACAGAGATTGAAGACTACAACTTTATCATTCAGGAATTTCTTTTCTTGGTTCACTATGTTTAAAAATGTAAGATTTTATATTTGTATGATCCTATTGAAACATTCTATTGCATATGCAGCAAACCAGGTACATCCGAAAAACTGGTATCCTATCCCACTTATATTTTGTCGTCCGTGGGGCAAGCTGCCAGAAAATGTGCCTTGCCATCCAAAGCTTGCCGACTTTGCCAACTGCATGAAGAAAAAAGGCAGGGGAATGTCCATCTTTGTCTCTATTATCGATGGAGACTACCATGAACGTGCTGAGGATGCTAAGGACGCTTGCAAGGAACTAAGTACCTATATTGACTACAAGCAATGTGAAGGTGTAGCTGAGATTGTTGTTGCCCCAAGCATGTCTGAAGGCTTTCGAGGCATTGTTCAGACTATGGGTCTCGGAAATCTCAAGCCAAATATAATCGTTATGCGGTACCCTGAGATTTGGCGACGTGAAAATTTGACTGATATTCCTGCTACCTTTGTTGGAATAATTAATGACTGCATTGTTGCGAACAAGGCTGTTGTCATTGTCAAGGGTCTCGACGAATGGCCTAATGAGTACCAAAGACAGTATGGTACCATCGATTTATACTGGATAGTGAGAGATGGTGGTCTCATGCTTCTACTCTCTCAGCTCCTCCTTACAAAAGATAGCTTTGAAGGCTGTAAGATACAGGTGTTCTGCATTGCAGAGGAAGATTCTGATGCAGAGGGATTGAAGGCTGATGTAAAGAAGTTTCTTTATGACCTCCGGATGCAAGCTGAAGTTATTGTCATTTCCATGAAGTCATGGGAAGCCGAAGGGGAGCAGCAAGAATCTGTCGAAGCATTCAGTGCTGCACGACGGAGAGTTGCCAGTTACTTGGAAGAAATGAAAGAGCAAGCACAGAGAGACCGGACTCCGTTGATGGCTGATGGAAAGCCTGTGTTTGTTGAAGAACAACAAGTAGAGAAATTCCTTTACACCACTCTAAAGCTGAACTTAATGGTACAGAAATACTCGAGAATGGCTTCCGTCGTGCTTGTAAGCTTACCTCCTCCACCTCTCAATCATCCTGCAACCTTCTACATGGAATACATGGATC-TGCTGGTTGAAAATATACCAAGACTCTTGATTGTTCGTGGATATCATAAAGATGTTGTCACTTTATTCACGTAGTTCTTGTTCATGTACTTGTATAATTTTTTGTTGCTTTAGCTAAGAACTCCCAATTTATTTGCCTTTTAACATTTTC</genome_strand>
        <mrna_strand>TGAATCGCAGCTTAAAAACCCCTTTTCTCGCGGTTAACACTTTCCGGTTTGGGTAGTTCAGACTTGACTGCTTTGAATTCGGGAGGCAATGGAAGGTGGAGAAGAGATTGAGATTGCGGAGGAAAATGAGTTCCCTTCAGTTATTGGACGAAAATACAGTCCAGTGGTGGCGCATGACAATGATAGTGCAGTTATTGAGATGTCTTCTGTTCGTCCCGGATCTTCCTCTTCTCTCCCCAACCACGATCTCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGTCAAAGTAGGTGTCCATCCAAATATGGCATCTGAAGAAAGAGACGAGTCATTATCCAATCATAGTAGCAATGGTCCTCAAAGAGAATCCAAACTGGAATTATTTGGCTTTGATTCTCTAGTAAATATTCTAGGTCTCAAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGACAGGGGATCAAATTCCCGCACCGTCTAGTCCAAGAGATGGTGAGGATATAACTCTCACGCTTGAGCAACCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACTTAATGGTACAGAAATACTCGAGAATGGCTTCCGTCGTACTCGTAAGCTTACCTCCTCCACCTCTCAATCATCCTGCAACCTTCTACATGGAATACATGGATCNTGCTGGTTGAAAATATACCAAGACTCTTGATTGTTCGTGGATATCATAAAGATGTTGTCACTNTATTCACGTAGTTCTTGTTCATGTATTTGTATAATTNTTTGTTGCTTTAGCTAAGAACTCCCAATTTATTTGCCTTTTAACATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E467185" ref_strand="+" ref_description="SGN-E467185 [cSTB-42-H3]">
      <seq>ctttgttggaataattaatgactgcattgttgcaaacaaggctgttgtcattgtcaagggtctcgatgaatggccaaatgagtatcaaagacagtatggtaccatcgatttatactggatagtgagagatggtggtcttatgcttctactctctcagctcctccttacaaaagatagctttgagggctgtaagatacaggtgttctgcattgcggaggcagattctgatgcagagggattgaaggctgatgtaaagaaatttctttatgacctccggatgcaagctgaagttattgtcatttcaatgaggtcatgggaagccgaaggggagcagcaagaatctgttgaagcattcagtgctgcacgacagagagttgctagttacttggaagaaatgaaagagcaagcacagagagaccggactccgttgatggctgatggaaagcctgtgtttgttgaagagcaacaagtagagaaattcctttacaccactctaaagctgaacttaatggtacaaaaatactccagaatggctgcagtcgtgctcgtaagctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="7131" stop="5976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6831" g_stop="6276" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E467185" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6831" e_stop="6276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTTGGAATAATTAATGACTGCATTGTTGCGAACAAGGCTGTTGTCATTGTCAAGGGTCTCGACGAATGGCCTAATGAGTACCAAAGACAGTATGGTACCATCGATTTATACTGGATAGTGAGAGATGGTGGTCTCATGCTTCTACTCTCTCAGCTCCTCCTTACAAAAGATAGCTTTGAAGGCTGTAAGATACAGGTGTTCTGCATTGCAGAGGAAGATTCTGATGCAGAGGGATTGAAGGCTGATGTAAAGAAGTTTCTTTATGACCTCCGGATGCAAGCTGAAGTTATTGTCATTTCCATGAAGTCATGGGAAGCCGAAGGGGAGCAGCAAGAATCTGTCGAAGCATTCAGTGCTGCACGACGGAGAGTTGCCAGTTACTTGGAAGAAATGAAAGAGCAAGCACAGAGAGACCGGACTCCGTTGATGGCTGATGGAAAGCCTGTGTTTGTTGAAGAACAACAAGTAGAGAAATTCCTTTACACCACTCTAAAGCTGAACTTAATGGTACAGAAATACTCGAGAATGGCTTCCGTCGTGCTTGTAAGCTTA</genome_strand>
        <mrna_strand>CTTTGTTGGAATAATTAATGACTGCATTGTTGCAAACAAGGCTGTTGTCATTGTCAAGGGTCTCGATGAATGGCCAAATGAGTATCAAAGACAGTATGGTACCATCGATTTATACTGGATAGTGAGAGATGGTGGTCTTATGCTTCTACTCTCTCAGCTCCTCCTTACAAAAGATAGCTTTGAGGGCTGTAAGATACAGGTGTTCTGCATTGCGGAGGCAGATTCTGATGCAGAGGGATTGAAGGCTGATGTAAAGAAATTTCTTTATGACCTCCGGATGCAAGCTGAAGTTATTGTCATTTCAATGAGGTCATGGGAAGCCGAAGGGGAGCAGCAAGAATCTGTTGAAGCATTCAGTGCTGCACGACAGAGAGTTGCTAGTTACTTGGAAGAAATGAAAGAGCAAGCACAGAGAGACCGGACTCCGTTGATGGCTGATGGAAAGCCTGTGTTTGTTGAAGAGCAACAAGTAGAGAAATTCCTTTACACCACTCTAAAGCTGAACTTAATGGTACAAAAATACTCCAGAATGGCTGCAGTCGTGCTCGTAAGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E313459" ref_strand="+" ref_description="SGN-E313459 [cTOA-13-F5]">
      <seq>ttcgaggcattgttcagactatgggtctcggaaatctcaagccaaatataatcgttatgcggtaccctgagatttggcgacgtgaaaatttgactgatattcctgctacctttgttggaataattaatgactgcattgttgcgaacaaggctgttgtcattgtcaagggtctcgacgaatggcctaatgagtaccaaagacagtatggtaccatcgatttatactggatagtgagagatggtggtctcatgcttctactctctcagctcctccttacaaaagatagctttgaaggctgtaagatacaggtgttctgcattgcagaggaagattctgatgcagagggattgaaggctgatgtaaagaagtttctttatgacctccggatgcaagctgaagttattgtcatttccatgaagtcatgggaagccgaaggggagcagcaagaatctgtcgaagcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="7240" stop="6177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6940" g_stop="6477" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E313459" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6940" e_stop="6477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGAGGCATTGTTCAGACTATGGGTCTCGGAAATCTCAAGCCAAATATAATCGTTATGCGGTACCCTGAGATTTGGCGACGTGAAAATTTGACTGATATTCCTGCTACCTTTGTTGGAATAATTAATGACTGCATTGTTGCGAACAAGGCTGTTGTCATTGTCAAGGGTCTCGACGAATGGCCTAATGAGTACCAAAGACAGTATGGTACCATCGATTTATACTGGATAGTGAGAGATGGTGGTCTCATGCTTCTACTCTCTCAGCTCCTCCTTACAAAAGATAGCTTTGAAGGCTGTAAGATACAGGTGTTCTGCATTGCAGAGGAAGATTCTGATGCAGAGGGATTGAAGGCTGATGTAAAGAAGTTTCTTTATGACCTCCGGATGCAAGCTGAAGTTATTGTCATTTCCATGAAGTCATGGGAAGCCGAAGGGGAGCAGCAAGAATCTGTCGAAGCATTC</genome_strand>
        <mrna_strand>TTCGAGGCATTGTTCAGACTATGGGTCTCGGAAATCTCAAGCCAAATATAATCGTTATGCGGTACCCTGAGATTTGGCGACGTGAAAATTTGACTGATATTCCTGCTACCTTTGTTGGAATAATTAATGACTGCATTGTTGCGAACAAGGCTGTTGTCATTGTCAAGGGTCTCGACGAATGGCCTAATGAGTACCAAAGACAGTATGGTACCATCGATTTATACTGGATAGTGAGAGATGGTGGTCTCATGCTTCTACTCTCTCAGCTCCTCCTTACAAAAGATAGCTTTGAAGGCTGTAAGATACAGGTGTTCTGCATTGCAGAGGAAGATTCTGATGCAGAGGGATTGAAGGCTGATGTAAAGAAGTTTCTTTATGACCTCCGGATGCAAGCTGAAGTTATTGTCATTTCCATGAAGTCATGGGAAGCCGAAGGGGAGCAGCAAGAATCTGTCGAAGCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E275089" ref_strand="+" ref_description="SGN-E275089 [cLEN-9-M23]">
      <seq>atctttgtctctattatcgatggagactaccatgaacgtgctgaggatgctaaggacgcttgcaaggaactaagtacctatattgactacaagcaatgtgaaggtgtagctgagattgttgttgccccaagcatgtctgaaggctttcgaggcattgttcagactatgggtctcggaaatctcaagccaaatataatcgttatgcggtaccctgagatttggcgacgtgaaaatttgactgatattcctgctacctttgttggaataattaatgactgcattgttgcgaacaaggctgttgtcattgtcaagggtctcgacgaatggcctaatgagtaccaaatacagtatggtaccatcgatttatactggatagtgagagatggtggtctcatgcttctactctctcagctcctccttacaaaagatagctttgaaggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="7385" stop="6343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7085" g_stop="6643" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E275089" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7085" e_stop="6643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTGTCTCTATTATCGATGGAGACTACCATGAACGTGCTGAGGATGCTAAGGACGCTTGCAAGGAACTAAGTACCTATATTGACTACAAGCAATGTGAAGGTGTAGCTGAGATTGTTGTTGCCCCAAGCATGTCTGAAGGCTTTCGAGGCATTGTTCAGACTATGGGTCTCGGAAATCTCAAGCCAAATATAATCGTTATGCGGTACCCTGAGATTTGGCGACGTGAAAATTTGACTGATATTCCTGCTACCTTTGTTGGAATAATTAATGACTGCATTGTTGCGAACAAGGCTGTTGTCATTGTCAAGGGTCTCGACGAATGGCCTAATGAGTACCAAAGACAGTATGGTACCATCGATTTATACTGGATAGTGAGAGATGGTGGTCTCATGCTTCTACTCTCTCAGCTCCTCCTTACAAAAGATAGCTTTGAAGGCTG</genome_strand>
        <mrna_strand>ATCTTTGTCTCTATTATCGATGGAGACTACCATGAACGTGCTGAGGATGCTAAGGACGCTTGCAAGGAACTAAGTACCTATATTGACTACAAGCAATGTGAAGGTGTAGCTGAGATTGTTGTTGCCCCAAGCATGTCTGAAGGCTTTCGAGGCATTGTTCAGACTATGGGTCTCGGAAATCTCAAGCCAAATATAATCGTTATGCGGTACCCTGAGATTTGGCGACGTGAAAATTTGACTGATATTCCTGCTACCTTTGTTGGAATAATTAATGACTGCATTGTTGCGAACAAGGCTGTTGTCATTGTCAAGGGTCTCGACGAATGGCCTAATGAGTACCAAATACAGTATGGTACCATCGATTTATACTGGATAGTGAGAGATGGTGGTCTCATGCTTCTACTCTCTCAGCTCCTCCTTACAAAAGATAGCTTTGAAGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E374887" ref_strand="+" ref_description="SGN-E374887 [TUS-15-O5]">
      <seq>ctggtttctgtgctactattcggagctgttgcaactagagataagcttttgactgataggttattatctgctacagttgcctggccatttccggctattgtttatgttggtataatcctctcaaccttgggggcagcccttcaaagccttactggtgctccacgtctccttgcagcgattgcaaatgatgaaattctacctgttcttaactattttaaagtggcagatggacatgagcctcatgtggctactctcttcactgccatcatctgcattggttgtgttgtaatcgggaatctagatcttgtctcacctactacaacaatgttttacctcgtatgctatgctggcgtgaacttatcctgcttccttctggatctgttagatgctcccagctggcgacctcggtggaaatttcaccactggagcctctctcttgttggagcattactttgtatagtgaccatgtttttgatttcctgggcattcaccattgtatcacttgccctagcaagcctcatatattattacgttagtataaaggggaaagcaggagactggggtgacggttttaagagtgcgtattttcagcttgctcttcgcagtttgcgatctttgggagcaaaccaggtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="12115" stop="9242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11815" g_stop="11757" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11756" i_stop="11123" i_length="634">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11122" g_stop="10722" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="460" r_length="401" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10721" i_stop="9704" i_length="1018">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9703" g_stop="9542" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="622" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E374887" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11815" e_stop="11757"/>
          <exon e_start="11122" e_stop="10722"/>
          <exon e_start="9703" e_stop="9542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTTTCTGTGCTACTATTCGGAGCTGTTGCAACTAGAGATAAGCTTTTGACTGATAGGTAATATGAACTTATGAAGTACTTTATGATACATTATCATACTTCTGGTACTGTCCTTGTTCCTATCTACACATTGCAGTTTTGAGTGATGAGGTTATTTAAATTGAGTGTTGGGTATAATTGGTCGAGAAAGATATAGTAACAACAACTCTAAGTCAACTCCAAGCAAGTTGAGATCTCCATATGGATCCTGGGCCCTCTTTAGCCATGTCACTCCATGTAGTGCAATTTTCTAACTTTATTTTAAATTAAGTTGGGCTGGCTGGGTGGGGAGTGGGTTAAAAGTCTTAAGATACCTCTTCTTCTATAGTGGAATCATCAAAATACTAAGATACTTTATTTCTTTTAGAAGTTCTAAAACTCGGTTTAGCGCTTGATGTGAGATACTTTTAAGAGGAACACCTCTCTATAGTCTCTCCATTTTTGGGAAAGGAAAAAGAGGAAGGTATGAGGTGAGGAAGTTAAAAAAAAAAGGAAAGGTAAAGGTTATTTCCCTTTACGCAGCAGTTGCAAATGATGACATTCTACCTGAAACTGCATCTAACTGATTATTTGAGGATGCTTAATGGTATTTAGTTCACTATCAATAAAATTTAAATTGGTATTCACTGCATTACTAAAACTATTTGTGCAGGTTATTATCTGCTACAGTTGCCTGGCCATTTCCGGCTATTGTTTATGTTGGTATAATCCTCTCAACCTTGGGGGCAGCCCTTCAAAGCCTTACTGGTGCTCCACGTCTCCTTGCAGCGATTGCAAATGATGAAATTCTACCTGTTCTTAACTATTTTAAAGTGGCAGATGGACATGAGCCTCATGTGGCTACTCTCTTCACTGCCATCATCTGCATTGGTTGTGTTGTAATCGGGAATCTAGATCTTGTCTCACCTACTACAACAATGTTTTACCTCGTATGCTATGCTGGCGTGAACTTATCCTGCTTCCTTCTGGATCTGTTAGATGCTCCCAGCTGGCGACCTCGGTGGAAATTTCACCACTGGAGCCTCTCTCTTGTTGGAGCATTACTTTGTATAGGTATCTTCTTAGCTGCAGCTGTTGTACAATAGTTATATTTTCTTAATTATGGATAATATAGATGGAAACAACTAAATCATTAATCCTAATGGGGATTTCATTGACTGTGTTAAGGGCCTCCAAAGGATTTCTATAAGAGTTTTGGTTTGCTTTGACCCCTTTGACTTAAATATTATGAAGAAAGTTCAATTCTAAGCTATTTACTGGTCGAAGATTATGGATTATCTCAATTTATAAGTTTCAAACAACTTTATTCTTTCGACCACGGACCACCTAAAAAGTTTCTCTTTGAATTTTTTTTCCCGTCTTAGCATTTCATGATCATCTGAAATGTTCATGTTTTTTTCAAACCCCCCCTTCTTTTTTCTGGATACATATGCTAATCAAATGTCCCTATGGTCATTGTCACTTCCATACTTTTTTTAACTACAAGTAGGTCATTTTGATGATCCAAATAAATTAGACAGGGATCTTATTTATATCCTCATAGCTCTTCCTTCCTTTACTACTTTTATTTTGTGGTGTTTATTCTATCCTTTTCTCTTCTATTTGTCATGTGTGATACTGCCGGAGTCCTGCTCATCCTTTTTATTTGAGAACCTTGTGAAATGACCTTGTTGCTCTCCCTTTCTGCCTCATATACTGTAGCATTTGGGCTGGCTTCAACAGATTTTATTATGTATTAAAACATTTAAATGTCATTCTTGCTTGGGTAAATCCTTGCCAGGAGAAGATAATTCATTCTGTTGAGTGGCACTTCCCAGATTATCAAATCTTCATCATGTTGTGGCCTTCATTTGCTAAACTTGACTTTGCACCCCTGCTACCCTATCCTAAAATTGATTTAATAGTGAAGACACTCTAGTTTGCTTTCCTATGATTTATCCTATATTTGCACTTTTTATTGTGAAGTTGGCTAGAGTAGGCGCTATAGACAAGCTACAGAGGTAGTCACCATACCTTGAAATCAATGTTTTCACTCATCTGATTTGTTTTCTTTTCTACTGTTCATTTACAGTGACCATGTTTTTGATTTCCTGGGCATTCACCATTGTATCACTTGCCCTAGCAAGCCTCATATATTATTACGTTAGTATAAAGGGGAAAGCAGGAGACTGGGGTGACGGTTTTAAGAGTGCGTATTTTCAGCTTGCTCTTCGCAGTTTGCGATCTTTGGGAG</genome_strand>
        <mrna_strand>CTGGTTTCTGTGCTACTATTCGGAGCTGTTGCAACTAGAGATAAGCTTTTGACTGATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTATCTGCTACAGTTGCCTGGCCATTTCCGGCTATTGTTTATGTTGGTATAATCCTCTCAACCTTGGGGGCAGCCCTTCAAAGCCTTACTGGTGCTCCACGTCTCCTTGCAGCGATTGCAAATGATGAAATTCTACCTGTTCTTAACTATTTTAAAGTGGCAGATGGACATGAGCCTCATGTGGCTACTCTCTTCACTGCCATCATCTGCATTGGTTGTGTTGTAATCGGGAATCTAGATCTTGTCTCACCTACTACAACAATGTTTTACCTCGTATGCTATGCTGGCGTGAACTTATCCTGCTTCCTTCTGGATCTGTTAGATGCTCCCAGCTGGCGACCTCGGTGGAAATTTCACCACTGGAGCCTCTCTCTTGTTGGAGCATTACTTTGTATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCATGTTTTTGATTTCCTGGGCATTCACCATTGTATCACTTGCCCTAGCAAGCCTCATATATTATTACGTTAGTATAAAGGGGAAAGCAGGAGACTGGGGTGACGGTTTTAAGAGTGCGTATTTTCAGCTTGCTCTTCGCAGTTTGCGATCTTTGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204796" ref_strand="+" ref_description="SGN-E204796 [cLEC-14-M21]">
      <seq>ctggtttctgtgctactattcggagctgttgcaactagagataagcttttgactgataggttattatctgctacagttgcctggccatttccggctattgtttatgttggtataatcctctcaaccttgggggcagcccttcaaagccttactggtgctccacgtctccttgcagcgattgcaaatgatgaaattctacctgttcttaactattttaaagtggcagatggacatgagcctcatgtggctactctcttcactgccatcatctgcattggttgtgttgtaatcgggaatctagatcttgtctcacctactacaacaatgttttacctcgtatgctatgctggcgtgaacttatcctgcttccttctggatctgttagatgctcccagctggcgacctcggtggaaatttcaccactggagcctctctcttgttggagcattactttgtatagtgaccatgtttttgatttcctgggcattcaccattgtatcacttgccctagcaagcctcatatattattacgttagtataaaggggaaagcaagagactggggtgacggttttaagagtgcgtattttcagcttgctcttcgcagtttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="12115" stop="9254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11815" g_stop="11757" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11756" i_stop="11123" i_length="634">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11122" g_stop="10722" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="460" r_length="401" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10721" i_stop="9704" i_length="1018">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9703" g_stop="9554" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="610" r_length="150" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E204796" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11815" e_stop="11757"/>
          <exon e_start="11122" e_stop="10722"/>
          <exon e_start="9703" e_stop="9554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTTTCTGTGCTACTATTCGGAGCTGTTGCAACTAGAGATAAGCTTTTGACTGATAGGTAATATGAACTTATGAAGTACTTTATGATACATTATCATACTTCTGGTACTGTCCTTGTTCCTATCTACACATTGCAGTTTTGAGTGATGAGGTTATTTAAATTGAGTGTTGGGTATAATTGGTCGAGAAAGATATAGTAACAACAACTCTAAGTCAACTCCAAGCAAGTTGAGATCTCCATATGGATCCTGGGCCCTCTTTAGCCATGTCACTCCATGTAGTGCAATTTTCTAACTTTATTTTAAATTAAGTTGGGCTGGCTGGGTGGGGAGTGGGTTAAAAGTCTTAAGATACCTCTTCTTCTATAGTGGAATCATCAAAATACTAAGATACTTTATTTCTTTTAGAAGTTCTAAAACTCGGTTTAGCGCTTGATGTGAGATACTTTTAAGAGGAACACCTCTCTATAGTCTCTCCATTTTTGGGAAAGGAAAAAGAGGAAGGTATGAGGTGAGGAAGTTAAAAAAAAAAGGAAAGGTAAAGGTTATTTCCCTTTACGCAGCAGTTGCAAATGATGACATTCTACCTGAAACTGCATCTAACTGATTATTTGAGGATGCTTAATGGTATTTAGTTCACTATCAATAAAATTTAAATTGGTATTCACTGCATTACTAAAACTATTTGTGCAGGTTATTATCTGCTACAGTTGCCTGGCCATTTCCGGCTATTGTTTATGTTGGTATAATCCTCTCAACCTTGGGGGCAGCCCTTCAAAGCCTTACTGGTGCTCCACGTCTCCTTGCAGCGATTGCAAATGATGAAATTCTACCTGTTCTTAACTATTTTAAAGTGGCAGATGGACATGAGCCTCATGTGGCTACTCTCTTCACTGCCATCATCTGCATTGGTTGTGTTGTAATCGGGAATCTAGATCTTGTCTCACCTACTACAACAATGTTTTACCTCGTATGCTATGCTGGCGTGAACTTATCCTGCTTCCTTCTGGATCTGTTAGATGCTCCCAGCTGGCGACCTCGGTGGAAATTTCACCACTGGAGCCTCTCTCTTGTTGGAGCATTACTTTGTATAGGTATCTTCTTAGCTGCAGCTGTTGTACAATAGTTATATTTTCTTAATTATGGATAATATAGATGGAAACAACTAAATCATTAATCCTAATGGGGATTTCATTGACTGTGTTAAGGGCCTCCAAAGGATTTCTATAAGAGTTTTGGTTTGCTTTGACCCCTTTGACTTAAATATTATGAAGAAAGTTCAATTCTAAGCTATTTACTGGTCGAAGATTATGGATTATCTCAATTTATAAGTTTCAAACAACTTTATTCTTTCGACCACGGACCACCTAAAAAGTTTCTCTTTGAATTTTTTTTCCCGTCTTAGCATTTCATGATCATCTGAAATGTTCATGTTTTTTTCAAACCCCCCCTTCTTTTTTCTGGATACATATGCTAATCAAATGTCCCTATGGTCATTGTCACTTCCATACTTTTTTTAACTACAAGTAGGTCATTTTGATGATCCAAATAAATTAGACAGGGATCTTATTTATATCCTCATAGCTCTTCCTTCCTTTACTACTTTTATTTTGTGGTGTTTATTCTATCCTTTTCTCTTCTATTTGTCATGTGTGATACTGCCGGAGTCCTGCTCATCCTTTTTATTTGAGAACCTTGTGAAATGACCTTGTTGCTCTCCCTTTCTGCCTCATATACTGTAGCATTTGGGCTGGCTTCAACAGATTTTATTATGTATTAAAACATTTAAATGTCATTCTTGCTTGGGTAAATCCTTGCCAGGAGAAGATAATTCATTCTGTTGAGTGGCACTTCCCAGATTATCAAATCTTCATCATGTTGTGGCCTTCATTTGCTAAACTTGACTTTGCACCCCTGCTACCCTATCCTAAAATTGATTTAATAGTGAAGACACTCTAGTTTGCTTTCCTATGATTTATCCTATATTTGCACTTTTTATTGTGAAGTTGGCTAGAGTAGGCGCTATAGACAAGCTACAGAGGTAGTCACCATACCTTGAAATCAATGTTTTCACTCATCTGATTTGTTTTCTTTTCTACTGTTCATTTACAGTGACCATGTTTTTGATTTCCTGGGCATTCACCATTGTATCACTTGCCCTAGCAAGCCTCATATATTATTACGTTAGTATAAAGGGGAAAGCAGGAGACTGGGGTGACGGTTTTAAGAGTGCGTATTTTCAGCTTGCTCTTCGCAGTTTGC</genome_strand>
        <mrna_strand>CTGGTTTCTGTGCTACTATTCGGAGCTGTTGCAACTAGAGATAAGCTTTTGACTGATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTATCTGCTACAGTTGCCTGGCCATTTCCGGCTATTGTTTATGTTGGTATAATCCTCTCAACCTTGGGGGCAGCCCTTCAAAGCCTTACTGGTGCTCCACGTCTCCTTGCAGCGATTGCAAATGATGAAATTCTACCTGTTCTTAACTATTTTAAAGTGGCAGATGGACATGAGCCTCATGTGGCTACTCTCTTCACTGCCATCATCTGCATTGGTTGTGTTGTAATCGGGAATCTAGATCTTGTCTCACCTACTACAACAATGTTTTACCTCGTATGCTATGCTGGCGTGAACTTATCCTGCTTCCTTCTGGATCTGTTAGATGCTCCCAGCTGGCGACCTCGGTGGAAATTTCACCACTGGAGCCTCTCTCTTGTTGGAGCATTACTTTGTATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCATGTTTTTGATTTCCTGGGCATTCACCATTGTATCACTTGCCCTAGCAAGCCTCATATATTATTACGTTAGTATAAAGGGGAAAGCAAGAGACTGGGGTGACGGTTTTAAGAGTGCGTATTTTCAGCTTGCTCTTCGCAGTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279004" ref_strand="+" ref_description="SGN-E279004 [cLER-2-F24]">
      <seq>gccttactggtgctccacgtctccttgcagcgattgcaaatgatgaaattctacctgttcttaactattttaaagtggcagatggacatgagcctcatgtggctactctcttcactgccatcatctgcattggttgtgttgtaatcgggaatctagatcttgtctcacctactacaacaatgttttacctcgtatgctatgctggcgtgaacttatcctgcttccttctggatctgttagatgctcccagctggcgacctcggtggaaatttcaccactggagcctctctcttgttggagcattactttgtatagtgaccatgtttttgatttcctgggcattcaccattgtatcacttgccctagcaagcctcatatattattacgttagtataaaggggaaagcaggagactggggtgacggttttaagagtgcgtattttcagcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="11336" stop="9268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11036" g_stop="10722" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10721" i_stop="9704" i_length="1018">
            <donor d_prob="0.840" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9703" g_stop="9568" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="451" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E279004" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11036" e_stop="10722"/>
          <exon e_start="9703" e_stop="9568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTACTGGTGCTCCACGTCTCCTTGCAGCGATTGCAAATGATGAAATTCTACCTGTTCTTAACTATTTTAAAGTGGCAGATGGACATGAGCCTCATGTGGCTACTCTCTTCACTGCCATCATCTGCATTGGTTGTGTTGTAATCGGGAATCTAGATCTTGTCTCACCTACTACAACAATGTTTTACCTCGTATGCTATGCTGGCGTGAACTTATCCTGCTTCCTTCTGGATCTGTTAGATGCTCCCAGCTGGCGACCTCGGTGGAAATTTCACCACTGGAGCCTCTCTCTTGTTGGAGCATTACTTTGTATAGGTATCTTCTTAGCTGCAGCTGTTGTACAATAGTTATATTTTCTTAATTATGGATAATATAGATGGAAACAACTAAATCATTAATCCTAATGGGGATTTCATTGACTGTGTTAAGGGCCTCCAAAGGATTTCTATAAGAGTTTTGGTTTGCTTTGACCCCTTTGACTTAAATATTATGAAGAAAGTTCAATTCTAAGCTATTTACTGGTCGAAGATTATGGATTATCTCAATTTATAAGTTTCAAACAACTTTATTCTTTCGACCACGGACCACCTAAAAAGTTTCTCTTTGAATTTTTTTTCCCGTCTTAGCATTTCATGATCATCTGAAATGTTCATGTTTTTTTCAAACCCCCCCTTCTTTTTTCTGGATACATATGCTAATCAAATGTCCCTATGGTCATTGTCACTTCCATACTTTTTTTAACTACAAGTAGGTCATTTTGATGATCCAAATAAATTAGACAGGGATCTTATTTATATCCTCATAGCTCTTCCTTCCTTTACTACTTTTATTTTGTGGTGTTTATTCTATCCTTTTCTCTTCTATTTGTCATGTGTGATACTGCCGGAGTCCTGCTCATCCTTTTTATTTGAGAACCTTGTGAAATGACCTTGTTGCTCTCCCTTTCTGCCTCATATACTGTAGCATTTGGGCTGGCTTCAACAGATTTTATTATGTATTAAAACATTTAAATGTCATTCTTGCTTGGGTAAATCCTTGCCAGGAGAAGATAATTCATTCTGTTGAGTGGCACTTCCCAGATTATCAAATCTTCATCATGTTGTGGCCTTCATTTGCTAAACTTGACTTTGCACCCCTGCTACCCTATCCTAAAATTGATTTAATAGTGAAGACACTCTAGTTTGCTTTCCTATGATTTATCCTATATTTGCACTTTTTATTGTGAAGTTGGCTAGAGTAGGCGCTATAGACAAGCTACAGAGGTAGTCACCATACCTTGAAATCAATGTTTTCACTCATCTGATTTGTTTTCTTTTCTACTGTTCATTTACAGTGACCATGTTTTTGATTTCCTGGGCATTCACCATTGTATCACTTGCCCTAGCAAGCCTCATATATTATTACGTTAGTATAAAGGGGAAAGCAGGAGACTGGGGTGACGGTTTTAAGAGTGCGTATTTTCAGCTTGC</genome_strand>
        <mrna_strand>GCCTTACTGGTGCTCCACGTCTCCTTGCAGCGATTGCAAATGATGAAATTCTACCTGTTCTTAACTATTTTAAAGTGGCAGATGGACATGAGCCTCATGTGGCTACTCTCTTCACTGCCATCATCTGCATTGGTTGTGTTGTAATCGGGAATCTAGATCTTGTCTCACCTACTACAACAATGTTTTACCTCGTATGCTATGCTGGCGTGAACTTATCCTGCTTCCTTCTGGATCTGTTAGATGCTCCCAGCTGGCGACCTCGGTGGAAATTTCACCACTGGAGCCTCTCTCTTGTTGGAGCATTACTTTGTATAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCATGTTTTTGATTTCCTGGGCATTCACCATTGTATCACTTGCCCTAGCAAGCCTCATATATTATTACGTTAGTATAAAGGGGAAAGCAGGAGACTGGGGTGACGGTTTTAAGAGTGCGTATTTTCAGCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E480784" ref_strand="+" ref_description="SGN-E480784 [cSTD-15-E8]">
      <seq>atttcgtcggcgagcactctatttctccgacttacctccggtgaccgtgttttcttcagaaaacgaacttaaaggggagaaagtacagaagttcctgcagaaaaatgaatatcagtagtagccgggatgactacaagttccttcaaatagtagatgccagggctgcacttggccagaaagttaatctcatcggcgtcgttatcgaaaccggtcttcccaagcaatccaagggcacggattgcttttgctccattaggatcattgatgagtcctacccaagcccagggattgcagttaatttttttgccgaaactatggataagcttcctgaagtgctgactgttggtgatataattcagatctctcaagttgtgatgaaaactcatggacccgatatttatgctttgttcaacaagaagttctcttcatttgcaatatttgacggaaagaatgattcaaatttcctcccttatcaatgttcttctaagtatcatgctagagagcaagacaagaaatttatactgggtttgatgaagtggttggttgatcacaagattgatacaggtttgactggattacattcgttgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="25723" stop="30545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26023" g_stop="26259" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26260" i_stop="29054" i_length="2795">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29055" g_stop="29191" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="374" r_length="137" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29192" i_stop="30053" i_length="862">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30054" g_stop="30243" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="564" r_length="190" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E480784" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26023" e_stop="26259"/>
          <exon e_start="29055" e_stop="29191"/>
          <exon e_start="30054" e_stop="30243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCGTCGTCGAGCACTCTATTCCTCCGACTTAACTCCGGTGACCGTGCTTTTTTCACAAAATCAAACTTAAAGGAGAGAGATTACAGAAATTCTTGCAG-AAAATGAATCTCAATAGTAGCCGGGATGACTACAAGTTCCTTCAAATAGTAGATGCCAGGGCTGCACTTGGCCAGAAAGTTAATCTCATCGGCGTCGTTGTCGAAACCGGTCTTCCCAAGAAATCCAGGGGCACGGGTAATTTCTTCTTCTCAAATACTTTTTTCCTTACATTTTATGCAACTTCTCCCTTATTTCTACCTGTTTTATATAGTTGAATAATCTTCAATATTTGACCATTGAGTATTTAGGAGTGTAATTGTTTACATGCACTTTCTGATTCCACATTTAGTGTAAAAATAAAAATAAATTCAACGACAAATTCGACTTGAAAGTTGAGGCATTTATTAAGTTTCACTAATTTGTATCTAGAAGCTAGTCACTCATTTGACATCAACACTTGTTCAAGGTGCATTGAGCTGTTGAACATAATGTAAAAAGAATCCCCAACTCGGGAACAATGTCAACTTGTTTGGAACCAGAAAAGGCCTTCACAGGAACACATCTGCTAATTGGTCTTTAGTTTGGACAATAGAAAGAGAAATAAGACCATCAAATAACTTTCTCGGGAAAAATGACAATCCAGCTCAATATACTAGTCACATTTGTGAGAGATAGAGTTTTTAGCAACGTGGATACAACTTGATTGTCACAATAGGCAGCAGTCAAAGTAAGAGAGGTAATAGAAAATTCCACAAACAATTGAACAACAAAGAGTCCAAGACAACTCTGCAACTACTTTTGGAAGGATCTGCACTCACTAAGGCTAAGGAGTAGTAGCTTTTTTCCTTGATTTCCATTTTGTCAAGCATTTCAGAACAACCAGTGACATTCTCCTTTGAGTCTGGGTAAGTTTCCCAATCGTCATTACAGAAGGTTTTAAGAGAAAGAGAAAGATCATTTGAAATGAACAAGCCTAGGCAGACAAATGATTTCAGATACCAAAGGGTGGGAAATGCTTCTTTGAAGGTGAGAAAACATGGGAGTGTGCATGAATGACTTAGCAGCTAACCTGCTAAGATAAGTCAGGAAGTTCAGTTTGCCCGGCTAATTTTTTGTTGATTGTAGGATCTGATCTTAAACTTCCATCAGGTGCAGTACACTCAATTGCTGGTCCAAAGGGTATTGGCTGAAGGAAAATCTGAACAATGAAATTTATCCAATATTCCAAGAGTGAATTTTCTATGGCTGATCAGAATACATTAGCCAGTGTCTAAGACTTCCAAATACAGGAAGTAGTCAAAGACCCTTATTCATTGATTTTAAAAGTGGGATCCAGAAAATGCTTCAGCTTAGTGATCCGAAGCATGAGGCCCAGTCACCAGAACAATATCTGCATATAGGCATGAAAATGCAAAGGTCATTATCCTTATTAAAGAATAAAGAATGTTCATCCGAGAGTGCTGAAATCCTCTAGAATGTAAGATTACTCAAAGCTTGGTATACAATTGGTTGAATGCCTATTTTAGACCATTAAGTGATTCCCTCACATGCAGACACTGAGGCTAAGAGAAGACACTATAGACCCTGAGGGACCTTTGTATAGATCTCTCCTTTCAGCATCATAGAGAAAGCGTTGTTCACATCTGGTTGGTATATATTCCACCACTTCTTTGCTGTTATATATAAATCACATAAGGGTTGTTATCTAACTATTGGAGAACAAGTTTTAGTATAGTCTATACCCTCTTCACCAATGTTTTCAAAAAGATCAAATAAATAGACTATACCCTCTTCATAAAAAAAGAAGGAGAAGGTATAGTCTATACCTTCTCTTTGACTATTCCCTATAATCTCCAGCCTCCTTTTATATTATAGACCCGCTTTGAACCAATGTCAAATTCCACTAGGTTCCTAGTATATTGGAGAGGATATAGTCATTATAATTAACTTGTTAGAATGTCCACATTAGTTGAGAAAATGGGTTGTTATCCTACAAGTAAATCAAAGTCTACCCTTTGTAACAATTTAAGTGTTCAGATGAGATGGTTGCACAATACAATAGTACAAATGGGAAAGACTCGGATCGGTCAGATGACTCCAATGCAGACAGCTCTCTCGCAAATCCTAGATCAGGTTGATCAATTGAATGCTTAAGTGAATAAAGACTGAGCAAGAATCAAGGAAATGTAAGGGCTATAGCAGCCAAAAAGAAAGCAATTGTGAAGAGTCCCAAGTAGGAGCTTTAAGGGATGGGTGGTCTCTTTAATATGAACATTCCTCACCTCTTGAGCTAGCTGTTGGAGTTGAGTTAGACCCAAAATCCATTCCTTTACATGGTATCGGGGCAAGACTCATCCCAATTCTTGTTTTCCAGTGTTGTTGCCCTATATTAAATTGCTCACGCTCTAGATATCCAACCATAGGTGTGAGGGGAAGGGTGTGTAAAGAGTCTCACATCGGTGCTTTAAGAGATGAGTGATCTACTTAATATTGTTTGGACATTTCTTACCTCTAAAACTAGCTTTCGAGTTAAGTTAAGCCGAAGATCCATTTTCTTACGAAGATCAACAAAACCAATGTGAGTGGCTAATTGAGCAGGAATGATGACTTCATCAAGGCAAATCATTAGCTACAAATATTTGTTGCTTAACTTTTTATCTATACCACTAGCACTTGTGTTAGTGCATTATAACAACATACCGAGTGTGATCCCACAAGTCGGGTTTGGGGAGGGTAGTGTATATGCAAACCTTACCCCTACCTTGTGTGAGGTAGAGAGGTTCTTTCTTATAGATCATCAGCTCAAGGAAAGTGTTTTAAAAACACGTTTGATAAATACAAGTGCATTGAGTTGTTGAATGCCATATGTTGTACTCATCACATTTTGGGATATGGAGTAGTTAATATCTCAAACCGTTTTTTTCCACCAACATTGTGTGGAATGAACATTTTGGGCCTGATTTTGGCGTCTTTTGTTTTTATTTTTGTAGATGTCTTTTGCTCCATTAGGATCATTGATGAGTCCTACCCAAGCCCAGGGATTGCAGTTAATTTTTTTGCCGAAACTATGGATAAGCTTCCTGAAGTGCTGACTGTTGGTGATATACTTCAGATCTCTCAAGTTGTGGTAACTATTTTTGCTCAAATATTTGCTTGTTGCCTTTTGGGTGTAAAAGATTCTTGAACATTTTTTCATGTGATGGAAATGTTGAAATTATAGATAAGAGTATAACTAAATCCTGAAAATAAATGTTGAAATGGGCTGAATTTTCTTTAGAAAACAATGCACCATATTCAACAAGGTGTAAATATGGAGTTACAATTGGTATTACCTAGAATTCTTGGCTTTTTAAAGGGTGCGCTCCTTTCCCAAAATTTTTTTTTGAAGGACTTCCAATAGCGTGAGTACTTCCAATGGACCAGTTCATGATATTTTTACTAAATAGAAGACTTCATTTCCCCAGCGGTTGATATATTTTAGCATCCTTCACAGTTCAACTATCCTCCTGTAGACAGAAGCAGCTCACCAGAGATTTTGTTGTTTCTTTTAAATGGGATCTGATTTACCAACATTATGATTAGGATGGGCCGCCTTTGCAGTTAATCAGCCACTTGGAAGAGTGTTCTTATCCTCTGTTTTTTGATAAGGGGAAATGTGTTCTTTTCCCTCTTAAGGGGAAAAGTGCTTGTTGCTTCTAAAAAATTATTAGAATAGATTGACTACTTCTTGTTCTGCAGCCGTTCTTCCTCTAGACTCTGTTATATTTGAACCGCTTATGAATCTACTATTATGATCATGGGCAAAGGCCAAGTGGAAACAAATAAAATTCAATTTCTCAAGGAAATAGATAAGCATTAATTGGATTGGCCAACAAACTGAATGCATGATCTTGTCCTGATTGAGTGACCTTTTTTTGTTCTTAAGTATTAATTTCTGGAAGTAAAAAATATTGTGTCAATCCTTACAAGTGGTATTCTTCGGTTTGCAGATGAAAACTCATGGACCCGATATTTATGCTTTGTTCAACAAGAAGTTCTCTTCATTTGCAATATTTGACGGAAAGAATGATTCAAATATCCTCCCTTATCAATGTTCTTCTAAGTACCATGCTAGAGAGCAAGACAAGAAATTTATACTGGGTTTGATGAAGTGGTTGGTTGATCACAAGATCGATACAG</genome_strand>
        <mrna_strand>ATTTCGTCGGCGAGCACTCTATTTCTCCGACTTACCTCCGGTGACCGTGTTTTCTTCAGAAAA-CGAACTTAAAGGGGAGAAAGTACAGAAGTTCCTGCAGAAAAATGAATATCAGTAGTAGCCGGGATGACTACAAGTTCCTTCAAATAGTAGATGCCAGGGCTGCACTTGGCCAGAAAGTTAATCTCATCGGCGTCGTTATCGAAACCGGTCTTCCCAAGCAATCCAAGGGCACGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTTTGCTCCATTAGGATCATTGATGAGTCCTACCCAAGCCCAGGGATTGCAGTTAATTTTTTTGCCGAAACTATGGATAAGCTTCCTGAAGTGCTGACTGTTGGTGATATAATTCAGATCTCTCAAGTTGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAAACTCATGGACCCGATATTTATGCTTTGTTCAACAAGAAGTTCTCTTCATTTGCAATATTTGACGGAAAGAATGATTCAAATTTCCTCCCTTATCAATGTTCTTCTAAGTATCATGCTAGAGAGCAAGACAAGAAATTTATACTGGGTTTGATGAAGTGGTTGGTTGATCACAAGATTGATACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E437854" ref_strand="+" ref_description="SGN-E437854 [cSTA-5-C14]">
      <seq>tcggcgagcactctatttctccgacttacctccggtgaccgtgttttcttcagaaaacgaacttaaaggggagaaagtgcagaagttcctgcagaaaaatgaatatcagtagtagccgggatgactacaagttccttcaaatagtagatgccagggctgcacttggccagaaagttaatctcatcggcgtcgttatcgaaaccggtcttcccaagcaatccaagggcacggattgcttttgctccattaggatcattgatgagtcctacccaagcccagggattgcagttaatttttttgccgaaactatggataagcttcctgaagtgctgactgttggtgatataattcagatctctcaagttgtgatgaaaactcatggacccgatatttatgctttgttcaacaagaagttctcttcatttgcaatatttgacggaaagaatgattcaaatttcctcccttatcaatgttcttctaagtatcatgcaagagagcaagacaagaaatttatactgggtttgatgaagtggttggttgatcacaagattgatacaggtttgactgatttacattcgttgaaagagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="25729" stop="31171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26029" g_stop="26259" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26260" i_stop="29054" i_length="2795">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29055" g_stop="29191" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="368" r_length="137" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29192" i_stop="30053" i_length="862">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30054" g_stop="30243" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="558" r_length="190" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30244" i_stop="30840" i_length="597">
            <donor d_prob="0.323" d_score="0.98"/>
            <acceptor a_prob="0.840" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30841" g_stop="30871" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="589" r_length="31" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E437854" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26029" e_stop="26259"/>
          <exon e_start="29055" e_stop="29191"/>
          <exon e_start="30054" e_stop="30243"/>
          <exon e_start="30841" e_stop="30871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCGAGCACTCTATTCCTCCGACTTAACTCCGGTGACCGTGCTTTTTTCACAAAATCAAACTTAAAGGAGAGAGATTACAGAAATTCTTGCAGAAA-ATGAATCTCAATAGTAGCCGGGATGACTACAAGTTCCTTCAAATAGTAGATGCCAGGGCTGCACTTGGCCAGAAAGTTAATCTCATCGGCGTCGTTGTCGAAACCGGTCTTCCCAAGAAATCCAGGGGCACGGGTAATTTCTTCTTCTCAAATACTTTTTTCCTTACATTTTATGCAACTTCTCCCTTATTTCTACCTGTTTTATATAGTTGAATAATCTTCAATATTTGACCATTGAGTATTTAGGAGTGTAATTGTTTACATGCACTTTCTGATTCCACATTTAGTGTAAAAATAAAAATAAATTCAACGACAAATTCGACTTGAAAGTTGAGGCATTTATTAAGTTTCACTAATTTGTATCTAGAAGCTAGTCACTCATTTGACATCAACACTTGTTCAAGGTGCATTGAGCTGTTGAACATAATGTAAAAAGAATCCCCAACTCGGGAACAATGTCAACTTGTTTGGAACCAGAAAAGGCCTTCACAGGAACACATCTGCTAATTGGTCTTTAGTTTGGACAATAGAAAGAGAAATAAGACCATCAAATAACTTTCTCGGGAAAAATGACAATCCAGCTCAATATACTAGTCACATTTGTGAGAGATAGAGTTTTTAGCAACGTGGATACAACTTGATTGTCACAATAGGCAGCAGTCAAAGTAAGAGAGGTAATAGAAAATTCCACAAACAATTGAACAACAAAGAGTCCAAGACAACTCTGCAACTACTTTTGGAAGGATCTGCACTCACTAAGGCTAAGGAGTAGTAGCTTTTTTCCTTGATTTCCATTTTGTCAAGCATTTCAGAACAACCAGTGACATTCTCCTTTGAGTCTGGGTAAGTTTCCCAATCGTCATTACAGAAGGTTTTAAGAGAAAGAGAAAGATCATTTGAAATGAACAAGCCTAGGCAGACAAATGATTTCAGATACCAAAGGGTGGGAAATGCTTCTTTGAAGGTGAGAAAACATGGGAGTGTGCATGAATGACTTAGCAGCTAACCTGCTAAGATAAGTCAGGAAGTTCAGTTTGCCCGGCTAATTTTTTGTTGATTGTAGGATCTGATCTTAAACTTCCATCAGGTGCAGTACACTCAATTGCTGGTCCAAAGGGTATTGGCTGAAGGAAAATCTGAACAATGAAATTTATCCAATATTCCAAGAGTGAATTTTCTATGGCTGATCAGAATACATTAGCCAGTGTCTAAGACTTCCAAATACAGGAAGTAGTCAAAGACCCTTATTCATTGATTTTAAAAGTGGGATCCAGAAAATGCTTCAGCTTAGTGATCCGAAGCATGAGGCCCAGTCACCAGAACAATATCTGCATATAGGCATGAAAATGCAAAGGTCATTATCCTTATTAAAGAATAAAGAATGTTCATCCGAGAGTGCTGAAATCCTCTAGAATGTAAGATTACTCAAAGCTTGGTATACAATTGGTTGAATGCCTATTTTAGACCATTAAGTGATTCCCTCACATGCAGACACTGAGGCTAAGAGAAGACACTATAGACCCTGAGGGACCTTTGTATAGATCTCTCCTTTCAGCATCATAGAGAAAGCGTTGTTCACATCTGGTTGGTATATATTCCACCACTTCTTTGCTGTTATATATAAATCACATAAGGGTTGTTATCTAACTATTGGAGAACAAGTTTTAGTATAGTCTATACCCTCTTCACCAATGTTTTCAAAAAGATCAAATAAATAGACTATACCCTCTTCATAAAAAAAGAAGGAGAAGGTATAGTCTATACCTTCTCTTTGACTATTCCCTATAATCTCCAGCCTCCTTTTATATTATAGACCCGCTTTGAACCAATGTCAAATTCCACTAGGTTCCTAGTATATTGGAGAGGATATAGTCATTATAATTAACTTGTTAGAATGTCCACATTAGTTGAGAAAATGGGTTGTTATCCTACAAGTAAATCAAAGTCTACCCTTTGTAACAATTTAAGTGTTCAGATGAGATGGTTGCACAATACAATAGTACAAATGGGAAAGACTCGGATCGGTCAGATGACTCCAATGCAGACAGCTCTCTCGCAAATCCTAGATCAGGTTGATCAATTGAATGCTTAAGTGAATAAAGACTGAGCAAGAATCAAGGAAATGTAAGGGCTATAGCAGCCAAAAAGAAAGCAATTGTGAAGAGTCCCAAGTAGGAGCTTTAAGGGATGGGTGGTCTCTTTAATATGAACATTCCTCACCTCTTGAGCTAGCTGTTGGAGTTGAGTTAGACCCAAAATCCATTCCTTTACATGGTATCGGGGCAAGACTCATCCCAATTCTTGTTTTCCAGTGTTGTTGCCCTATATTAAATTGCTCACGCTCTAGATATCCAACCATAGGTGTGAGGGGAAGGGTGTGTAAAGAGTCTCACATCGGTGCTTTAAGAGATGAGTGATCTACTTAATATTGTTTGGACATTTCTTACCTCTAAAACTAGCTTTCGAGTTAAGTTAAGCCGAAGATCCATTTTCTTACGAAGATCAACAAAACCAATGTGAGTGGCTAATTGAGCAGGAATGATGACTTCATCAAGGCAAATCATTAGCTACAAATATTTGTTGCTTAACTTTTTATCTATACCACTAGCACTTGTGTTAGTGCATTATAACAACATACCGAGTGTGATCCCACAAGTCGGGTTTGGGGAGGGTAGTGTATATGCAAACCTTACCCCTACCTTGTGTGAGGTAGAGAGGTTCTTTCTTATAGATCATCAGCTCAAGGAAAGTGTTTTAAAAACACGTTTGATAAATACAAGTGCATTGAGTTGTTGAATGCCATATGTTGTACTCATCACATTTTGGGATATGGAGTAGTTAATATCTCAAACCGTTTTTTTCCACCAACATTGTGTGGAATGAACATTTTGGGCCTGATTTTGGCGTCTTTTGTTTTTATTTTTGTAGATGTCTTTTGCTCCATTAGGATCATTGATGAGTCCTACCCAAGCCCAGGGATTGCAGTTAATTTTTTTGCCGAAACTATGGATAAGCTTCCTGAAGTGCTGACTGTTGGTGATATACTTCAGATCTCTCAAGTTGTGGTAACTATTTTTGCTCAAATATTTGCTTGTTGCCTTTTGGGTGTAAAAGATTCTTGAACATTTTTTCATGTGATGGAAATGTTGAAATTATAGATAAGAGTATAACTAAATCCTGAAAATAAATGTTGAAATGGGCTGAATTTTCTTTAGAAAACAATGCACCATATTCAACAAGGTGTAAATATGGAGTTACAATTGGTATTACCTAGAATTCTTGGCTTTTTAAAGGGTGCGCTCCTTTCCCAAAATTTTTTTTTGAAGGACTTCCAATAGCGTGAGTACTTCCAATGGACCAGTTCATGATATTTTTACTAAATAGAAGACTTCATTTCCCCAGCGGTTGATATATTTTAGCATCCTTCACAGTTCAACTATCCTCCTGTAGACAGAAGCAGCTCACCAGAGATTTTGTTGTTTCTTTTAAATGGGATCTGATTTACCAACATTATGATTAGGATGGGCCGCCTTTGCAGTTAATCAGCCACTTGGAAGAGTGTTCTTATCCTCTGTTTTTTGATAAGGGGAAATGTGTTCTTTTCCCTCTTAAGGGGAAAAGTGCTTGTTGCTTCTAAAAAATTATTAGAATAGATTGACTACTTCTTGTTCTGCAGCCGTTCTTCCTCTAGACTCTGTTATATTTGAACCGCTTATGAATCTACTATTATGATCATGGGCAAAGGCCAAGTGGAAACAAATAAAATTCAATTTCTCAAGGAAATAGATAAGCATTAATTGGATTGGCCAACAAACTGAATGCATGATCTTGTCCTGATTGAGTGACCTTTTTTTGTTCTTAAGTATTAATTTCTGGAAGTAAAAAATATTGTGTCAATCCTTACAAGTGGTATTCTTCGGTTTGCAGATGAAAACTCATGGACCCGATATTTATGCTTTGTTCAACAAGAAGTTCTCTTCATTTGCAATATTTGACGGAAAGAATGATTCAAATATCCTCCCTTATCAATGTTCTTCTAAGTACCATGCTAGAGAGCAAGACAAGAAATTTATACTGGGTTTGATGAAGTGGTTGGTTGATCACAAGATCGATACAGGTACTCGCAAGTCACATCACTAGTGCCAACTGCTGAGTGATGCTTATAATAGAATTCTGTGCTAAAAGTACATAACAATTAATTATTTAGCTTCTGAAGGTTGCATAAAGAATGTATCCTATATTGGTGATTCTATTTAGGTGTACATTTCCATTATGGATGTACGGGTAAATATAATATAGTGCATATTTGGTGTAGTTTGAAAGAATTTTCATGAAGAACCCTTGTCACACTTGTTTGACTCGGACGTGTCAAGACAAAGAATGGATCCATATAGCATAGGATGGGCCAGCTAACTTTTCTTCCTGTGAAAGGTGTTTGAGATATGTGTATGCACATGTACCTGTAGCTATATCTAGTTGTTTTAGCTTCTCACATAATCTTAGTTATTGTTACTCTATCCTTCTTTGAACATCAGTTTTTCTTTCAATTGATCCACCAACAAAATCCCTTCCCAGATGCCATTTGTATTCTGGTAGTGCTTTTCCTTTTTCTTTGGTAACTTAATTTATTTTGTTGTTTGAATTTTCGGCAACCTCCCTCAGAATACGATTACAATTTTCTTGGTACTCAGTAGATGCTTCATTTTCTTGATAGATTTGACTGATTTACATTCATTGAAAGAGAT</genome_strand>
        <mrna_strand>TCGGCGAGCACTCTATTTCTCCGACTTACCTCCGGTGACCGTGTTTTCTTCAGAAAA-CGAACTTAAAGGGGAGAAAGTGCAGAAGTTCCTGCAGAAAAATGAATATCAGTAGTAGCCGGGATGACTACAAGTTCCTTCAAATAGTAGATGCCAGGGCTGCACTTGGCCAGAAAGTTAATCTCATCGGCGTCGTTATCGAAACCGGTCTTCCCAAGCAATCCAAGGGCACGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTTTGCTCCATTAGGATCATTGATGAGTCCTACCCAAGCCCAGGGATTGCAGTTAATTTTTTTGCCGAAACTATGGATAAGCTTCCTGAAGTGCTGACTGTTGGTGATATAATTCAGATCTCTCAAGTTGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAAACTCATGGACCCGATATTTATGCTTTGTTCAACAAGAAGTTCTCTTCATTTGCAATATTTGACGGAAAGAATGATTCAAATTTCCTCCCTTATCAATGTTCTTCTAAGTATCATGCAAGAGAGCAAGACAAGAAATTTATACTGGGTTTGATGAAGTGGTTGGTTGATCACAAGATTGATACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGACTGATTTACATTCGTTGAAAGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E408857" ref_strand="+" ref_description="SGN-E408857 [PPI-12-M2]">
      <seq>ccctaatgtaccttttgtctccttgatgagagctctggcgaatccaaaggtcataggtaaattccactgtgtagttcgagtggtagcggcatttccttggctagctgaagatttccgttccccttctggggtttataggatcaggttgaccctagaggatccaactgcaagaatccatgcatatctgtataaagaggatgcggaacagttttttgacggctacccctctgtttatacattaacaaaaaagaggaatctgttgcttggaacttctgaaggcgatgatggtagtgaaatgaatgatcattttagaaatccaccctggatcaggtgttgcttaaagtcttaccatatcgacgacagtgatagttggggtagtaggaactttcgaatttttgctaccactatgaaagcatangagattgtccattctgtatgcctccagtgctttcaattaatgtaatgtagtttggcctcttctgcaatgtactgaggcagttgctagcaagtagcttagaatgacctaacctatttcttttgcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="32822" stop="35772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33122" g_stop="33170" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33171" i_stop="34171" i_length="1001">
            <donor d_prob="0.953" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34172" g_stop="34324" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="202" r_length="153" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34325" i_stop="34796" i_length="472">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.794" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34797" g_stop="35103" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="508" r_length="306" r_score="0.919"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35104" i_stop="35433" i_length="330">
            <donor d_prob="0.376" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35434" g_stop="35472" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="545" r_length="37" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E408857" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33122" e_stop="33170"/>
          <exon e_start="34172" e_stop="34324"/>
          <exon e_start="34797" e_stop="35103"/>
          <exon e_start="35434" e_stop="35472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTAATGTACCTTTTGTCTCCTTGATGAGAGCTCTGGCTAATCCAAAGGTATCTCAACCACTTTACTGGGCCGCTATTTCCTTCTTTTGCGCTCTTAGTATTCCAAGTATTGAAGATATATTAACACTATCTTTAACAATTTAATTGTTGGACATTGCAAAAAAAACTTGCATCTTTGATTTTTAATTACACATTGGCATCCTAATGCGTTATGTGCTTTCAGTTGATCCTGGCTAGGCTGGAAGAGTGTAGTGATAGCGGGAGTAGTTTTTCTTTGAACCATTTTTTTTCCTCGATGTTGCAAACTACCTTACATCTTCACACTCAAACATTTAACATTTCCTTTGCTTTATAATTGATGCTGAAATGGCTAAAAATCCTATTAAAATGGCAATGCATGATATGCTTTGATCTCTTTAAAGTACCAGTTGACAGTTTATATCAACTGGGTGAATCTTCTGGATACTTGGCAGCGTTAAAGACTAGAGAAAATGTTCGCAGTCAGTTTTAAGTTATTCCTTCCTGATTATTCCATTGATCTGAATGACTTCTCTTTGTAAAGTTGCTTCTTATGGAAATTTCTTTTCTTAGGTCTTAAATAAGAATAATAAGTTTCATTTCTCCTGCTGATTATACTGTATCTGTATTCCACTAGTGATAGTGGAAAAGGAGCGCACGGGAATAATATGTGGGGAAAATTGATGCTTGATGTAGTGCAAGTTTCTTTTTCAGTTTCATCACAGAAGCTATTGAGTTAGGATGATTCTAATAACATTCTTTTTCTTTTGTGCTACATATATGTGATATATGACTTCACACTTTTTATCACTTAACATCATTGAGCTTATTATATGGCTTTTTAACTGTTGTATTTCCTTTTCTTACTGATTTTGATATGTTTTACTTGAGCTGAGAGTCTATTAGAAACAACCTCTACCTTCACAAGGTAGGGGGCTGCATTACACATCACCCTCCTAAACCCAACTTGTGGGATTACACTGGATATGTTGTTGTTTGTTGTTGTACGTCATTGGGCTTATTGCTTGCAGGTCATAGGTAAATTCCACTGTGTAGTTCGAGTGGTAGCGGCATTTCCTTGGCTAGCTGAACATTTCCGTTCCCCTTCTGGGGTTTATAGGATCAGGTTGACCCTAGAGGATCCAACTACAAGAATCCATGCATATCTGTATAAAGAGGATGCGGTAATAATTGTTTGTGTACTTGCAGTCTTTTATCAATCTTTATCGAGTATACTGCAGCACATTAATAGCCATTTAGGGACTGTGTTTAATGACATAGCTCAGTATAAATATGTTCCCTGGACTTGGATATCAGTATTTTATGTATTTGTGAGGATGTATATGACATACCTATGCTCATACTCAACTGTTCGGCTTTGTTATCTTGAAGCAAAATGAAGATTCCTGTGTCATAGTTGTTGATATTGTACAAACAACTATTTACTTGCCAAATCATCCACCAATTGATTTGGGAAATGATGAGATTGTGGCCCTTGAAGATTATGAATGGCAGGCCTCTATGTGCTTACATAAAGACGATATTAAAATATCTGTTGGTTTATATTTATTGCATAAAATTTGCTATACATGCTTGAATTGTTTGAGCTACTAACTTATGAATCTTGGTTTTGACGTGATACTACTATACTCGCAGGAAAAGTTTTTTGACGGCTACCCCTCTGTTTATACATTAACAAAAAAGAGGAATTTGTTGCTTGGAACTTCTGAAGGCGATGATGATAGTGAAATGAATGATCATTTTAGAAATCCACCCTGGATAAGGTGTTGCTTAATGTCTTACCATATCGATGACAATGATGTCTGGGGAAGTAGGAACTTTCGAATTTTTGCTACCACCCTGAAAGCATAGGAGATCGTCCATTCTGTAAGCCTACAGTGCTTCCAATTAATGTTATGCAGTTTGGCCTCTTCTTCAAATGTACCTAGACAGTTGCTAGCAAGTACAGTAAAAAACTCTTAGTTCGAAAAGATAACATCGAAATTTTTGGATGCAGTAAGAAAAGTTAGAGACTTGCTTCAATTAGATTTAATTTTTTTTTAAAAAGACTGAGCACAATAGAATCATATATATATATATATATATATATATATATTTATGATATCGAACACAATAGAATCATATATATTTGTATTTTTAGAGAATTATTAATTTATGATATTAAAGTAACCATATATTCTAAAAATATATTATCTTGTTGAAATTGATGATTAAGTCGGGATCAGAGAAAAATATTATCTTAGAAAGATTATTAATTTATAGAGGTTTTACTGTAGCTTAGAATGACCATAACCTATTTTCTTTTGCTTGT</genome_strand>
        <mrna_strand>CCCTAATGTACCTTTTGTCTCCTTGATGAGAGCTCTGGCGAATCCAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATAGGTAAATTCCACTGTGTAGTTCGAGTGGTAGCGGCATTTCCTTGGCTAGCTGAAGATTTCCGTTCCCCTTCTGGGGTTTATAGGATCAGGTTGACCCTAGAGGATCCAACTGCAAGAATCCATGCATATCTGTATAAAGAGGATGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAGTTTTTTGACGGCTACCCCTCTGTTTATACATTAACAAAAAAGAGGAATCTGTTGCTTGGAACTTCTGAAGGCGATGATGGTAGTGAAATGAATGATCATTTTAGAAATCCACCCTGGATCAGGTGTTGCTTAAAGTCTTACCATATCGACGACAGTGATAGTTGGGGTAGTAGGAACTTTCGAATTTTTGCTACCACTATGAAAGCATANGAGATTGTCCATTCTGTATGCCTCCAGTGCTTTCAATTAATGTAATGTAGTTTGGCCTCTTCTGC-AATGTACTGAGGCAGTTGCTAGCAA..........................................................................................................................................................................................................................................................................................................................................GTAGCTTAGAATGACC-TAACCTA-TTTCTTTTGCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E430890" ref_strand="-" ref_description="SGN-E430890 [STM-54-B13]">
      <seq>caagaatccatgcatatctgtataaagaggatgcggaacagttttttgacggctacccctctgtttatacattaacaaaaaagaggaatttgttgcttggaacttctgaaggcgatgatggtagtgaaatgaatgatcattttagaaatccaccctggatcaggtgttgcttaaagtcttaccatatcgacgacagtgatagttggggaagtaggaactttcgaatttttgctaccactatgaaagcataggagattgtccattctgtatgcctccagtgctttcaattaatgtaatgtagtttggcctcttctgcaaatgtactgaggcagttgctaacaagtagcttagaatgacctaacctatttcttttgcttctgtaaatgcaatcatgctagcacacaatagctttgctttcatgtagattatgaagctataagctccctatcntttctcagtagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="33990" stop="35821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34290" g_stop="34324" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34325" i_stop="34796" i_length="472">
            <donor d_prob="0.973" d_score="0.00"/>
            <acceptor a_prob="0.794" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34797" g_stop="35103" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="342" r_length="307" r_score="0.928"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35104" i_stop="35433" i_length="330">
            <donor d_prob="0.376" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35434" g_stop="35526" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="432" r_length="90" r_score="0.849"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E430890" ref_strand="-">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E430890" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="34290" e_stop="34324"/>
          <exon e_start="34797" e_stop="35103"/>
          <exon e_start="35434" e_stop="35526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAATCCATGCATATCTGTATAAAGAGGATGCGGTAATAATTGTTTGTGTACTTGCAGTCTTTTATCAATCTTTATCGAGTATACTGCAGCACATTAATAGCCATTTAGGGACTGTGTTTAATGACATAGCTCAGTATAAATATGTTCCCTGGACTTGGATATCAGTATTTTATGTATTTGTGAGGATGTATATGACATACCTATGCTCATACTCAACTGTTCGGCTTTGTTATCTTGAAGCAAAATGAAGATTCCTGTGTCATAGTTGTTGATATTGTACAAACAACTATTTACTTGCCAAATCATCCACCAATTGATTTGGGAAATGATGAGATTGTGGCCCTTGAAGATTATGAATGGCAGGCCTCTATGTGCTTACATAAAGACGATATTAAAATATCTGTTGGTTTATATTTATTGCATAAAATTTGCTATACATGCTTGAATTGTTTGAGCTACTAACTTATGAATCTTGGTTTTGACGTGATACTACTATACTCGCAGGAAAAGTTTTTTGACGGCTACCCCTCTGTTTATACATTAACAAAAAAGAGGAATTTGTTGCTTGGAACTTCTGAAGGCGATGATGATAGTGAAATGAATGATCATTTTAGAAATCCACCCTGGATAAGGTGTTGCTTAATGTCTTACCATATCGATGACAATGATGTCTGGGGAAGTAGGAACTTTCGAATTTTTGCTACCACCCTGAAAGCATAGGAGATCGTCCATTCTGTAAGCCTACAGTGCTTCCAATTAATGTTATGCAGTTTGGCCTCTTCTTCAAATGTACCTAGACAGTTGCTAGCAAGTACAGTAAAAAACTCTTAGTTCGAAAAGATAACATCGAAATTTTTGGATGCAGTAAGAAAAGTTAGAGACTTGCTTCAATTAGATTTAATTTTTTTTTAAAAAGACTGAGCACAATAGAATCATATATATATATATATATATATATATATATTTATGATATCGAACACAATAGAATCATATATATTTGTATTTTTAGAGAATTATTAATTTATGATATTAAAGTAACCATATATTCTAAAAATATATTATCTTGTTGAAATTGATGATTAAGTCGGGATCAGAGAAAAATATTATCTTAGAAAGATTATTAATTTATAGAGGTTTTACTGTAGCTTAGAATGACCATAACCTATTTTCTTTTGCTTGTGTAGATGTTATCATCCTTGCACACAAATAGGTTTGCTTTCATGTAGTGAAAGAA</genome_strand>
        <mrna_strand>CAAGAATCCATGCATATCTGTATAAAGAGGATGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAGTTTTTTGACGGCTACCCCTCTGTTTATACATTAACAAAAAAGAGGAATTTGTTGCTTGGAACTTCTGAAGGCGATGATGGTAGTGAAATGAATGATCATTTTAGAAATCCACCCTGGATCAGGTGTTGCTTAAAGTCTTACCATATCGACGACAGTGATAGTTGGGGAAGTAGGAACTTTCGAATTTTTGCTACCACTATGAAAGCATAGGAGATTGTCCATTCTGTATGCCTCCAGTGCTTTCAATTAATGTAATGTAGTTTGGCCTCTTCTGCAAATGTACTGAGGCAGTTGCTAACAA..........................................................................................................................................................................................................................................................................................................................................GTAGCTTAGAATGACC-TAACCTA-TTTCTTTTGCTTCTGTAAATGCAATCATGCTAGCACAC-AATAGCTTTGCTTTCATGTAGATTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E462753" ref_strand="+" ref_description="SGN-E462753 [cPRO-12-J11]">
      <seq>caagaatccatgcatatctgtataaagaggatgcggaacagttttttgacggctacccctctgtttatacattaacaaaaaagaggaatttgttgcttggaacttctgaaggcgatgatggtagtgaaatgaatgatcattttagaaatccaccctggatcaggtgttgcttaaagtcttaccatatcgacgacagtgatagttggggaagtaggaactttcgaatttttgctaccactatgaaagcataggagattgtccattctgtatgcctccagtgctttcaattaatgtaatgtagtttggcctcttctgcaaatgtactgaggcagttgctaacaagtagcttagaatgacctaacctatttcttttgcttctgtaaatgcaatcatgctagcacacaatagctttgctttcatgtagataaagaagcttaaagctccctatcattatctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="33990" stop="35827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34290" g_stop="34324" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34325" i_stop="34796" i_length="472">
            <donor d_prob="0.973" d_score="0.00"/>
            <acceptor a_prob="0.794" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34797" g_stop="35103" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="342" r_length="307" r_score="0.928"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35104" i_stop="35433" i_length="330">
            <donor d_prob="0.376" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35434" g_stop="35526" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="432" r_length="90" r_score="0.871"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="457" polyA_stop="467"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E462753" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34290" e_stop="34324"/>
          <exon e_start="34797" e_stop="35103"/>
          <exon e_start="35434" e_stop="35526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAATCCATGCATATCTGTATAAAGAGGATGCGGTAATAATTGTTTGTGTACTTGCAGTCTTTTATCAATCTTTATCGAGTATACTGCAGCACATTAATAGCCATTTAGGGACTGTGTTTAATGACATAGCTCAGTATAAATATGTTCCCTGGACTTGGATATCAGTATTTTATGTATTTGTGAGGATGTATATGACATACCTATGCTCATACTCAACTGTTCGGCTTTGTTATCTTGAAGCAAAATGAAGATTCCTGTGTCATAGTTGTTGATATTGTACAAACAACTATTTACTTGCCAAATCATCCACCAATTGATTTGGGAAATGATGAGATTGTGGCCCTTGAAGATTATGAATGGCAGGCCTCTATGTGCTTACATAAAGACGATATTAAAATATCTGTTGGTTTATATTTATTGCATAAAATTTGCTATACATGCTTGAATTGTTTGAGCTACTAACTTATGAATCTTGGTTTTGACGTGATACTACTATACTCGCAGGAAAAGTTTTTTGACGGCTACCCCTCTGTTTATACATTAACAAAAAAGAGGAATTTGTTGCTTGGAACTTCTGAAGGCGATGATGATAGTGAAATGAATGATCATTTTAGAAATCCACCCTGGATAAGGTGTTGCTTAATGTCTTACCATATCGATGACAATGATGTCTGGGGAAGTAGGAACTTTCGAATTTTTGCTACCACCCTGAAAGCATAGGAGATCGTCCATTCTGTAAGCCTACAGTGCTTCCAATTAATGTTATGCAGTTTGGCCTCTTCTTCAAATGTACCTAGACAGTTGCTAGCAAGTACAGTAAAAAACTCTTAGTTCGAAAAGATAACATCGAAATTTTTGGATGCAGTAAGAAAAGTTAGAGACTTGCTTCAATTAGATTTAATTTTTTTTTAAAAAGACTGAGCACAATAGAATCATATATATATATATATATATATATATATATTTATGATATCGAACACAATAGAATCATATATATTTGTATTTTTAGAGAATTATTAATTTATGATATTAAAGTAACCATATATTCTAAAAATATATTATCTTGTTGAAATTGATGATTAAGTCGGGATCAGAGAAAAATATTATCTTAGAAAGATTATTAATTTATAGAGGTTTTACTGTAGCTTAGAATGACCATAACCTATTTTCTTTTGCTTGTGTAGATGTTATCATCCTTGCACACAAATAGGTTTGCTTTCATGTAGTGAAAGAA</genome_strand>
        <mrna_strand>CAAGAATCCATGCATATCTGTATAAAGAGGATGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAGTTTTTTGACGGCTACCCCTCTGTTTATACATTAACAAAAAAGAGGAATTTGTTGCTTGGAACTTCTGAAGGCGATGATGGTAGTGAAATGAATGATCATTTTAGAAATCCACCCTGGATCAGGTGTTGCTTAAAGTCTTACCATATCGACGACAGTGATAGTTGGGGAAGTAGGAACTTTCGAATTTTTGCTACCACTATGAAAGCATAGGAGATTGTCCATTCTGTATGCCTCCAGTGCTTTCAATTAATGTAATGTAGTTTGGCCTCTTCTGCAAATGTACTGAGGCAGTTGCTAACAA..........................................................................................................................................................................................................................................................................................................................................GTAGCTTAGAATGACC-TAACCTA-TTTCTTTTGCTTCTGTAAATGCAATCATGCTAGCACAC-AATAGCTTTGCTTTCATGTAGATAAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E712013" ref_strand="+" ref_description="SGN-E712013 [FB03CE12]">
      <seq>ccatcaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgtcgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttgtgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtacacctttgtggtgataaagtagctgtggtcatgttaattctgtcaaatctgcgtaatttactctggatgatgaggttgaatgttgacgcagctctttgttgcacaatcaaaagaagaaagtatatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38104" stop="35905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37805" g_stop="37710" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="278" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36607" g_stop="36205" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="681" r_length="403" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E712013" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37805" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGTGATAAAGTAGCTGTGGTCATGTTAATTCTGTCAAATCTGCGTAATTTACTCTGGATGATGAGGTTGAATGTTGACGCAGCTCTTTGTTGCACAATCAAAAGAAGAAAGTATATTTC</genome_strand>
        <mrna_strand>CCATCAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGTGATAAAGTAGCTGTGGTCATGTTAATTCTGTCAAATCTGCGTAATTTACTCTGGATGATGAGGTTGAATGTTGACGCAGCTCTTTGTTGCACAATCAAAAGAAGAAAGTATATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E713976" ref_strand="+" ref_description="SGN-E713976 [FB10AG02]">
      <seq>cactacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgtcgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttgtgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtacacctttgtggtgataaagtagctgtggtcatgttaattctgtcaaatctgcgtaatttactctggatgatgaggttgaatgttgacgcagctctttgttgcacaatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38108" stop="35914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37809" g_stop="37710" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="282" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36607" g_stop="36215" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="675" r_length="393" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E713976" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37809" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGTGATAAAGTAGCTGTGGTCATGTTAATTCTGTCAAATCTGCGTAATTTACTCTGGATGATGAGGTTGAATGTTGACGCAGCTCTTTGTTGCACAATCAAAAGAAGAA</genome_strand>
        <mrna_strand>CACTACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGTGATAAAGTAGCTGTGGTCATGTTAATTCTGTCAAATCTGCGTAATTTACTCTGGATGATGAGGTTGAATGTTGACGCAGCTCTTTGTTGCACAATCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E459275" ref_strand="+" ref_description="SGN-E459275 [cPRO-27-I16]">
      <seq>agaaaccctagttccaaaggtaaggtaaggtagaacttcaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggtttattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggttacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagtttgttgtgcataatgctagtgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaattgcacataatgtttccaccaggaagaggaaagagatcgtcgagcgagctgcacagcttgacgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgtttaagtgtttgaacctgttccttgtgttttgtttaattaatactctgtttttctcgaagtggattttgatacatcctattgctatcaaatgcttaaattttcagattttagtacaccttttgtggtgacaaagtggctacggtcatgttaattctgtncatcttcgtaatttactctgaatgatgatgttgaatgtcgacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38137" stop="35946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37922" g_stop="37907" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="133" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="315" r_length="182" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36259" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="665" r_length="350" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="677" polyA_stop="687"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E459275" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37922" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTG-TTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACC-TTTGTGGTGATAAAGTAGCTGTGGTCATGTTAATTCTGTCAAATCTGCGTAATTTACTCTGGATGATGAG</genome_strand>
        <mrna_strand>AGAAACCCTAGTTCCA................................................................................AAGGTAAGGTAAGGTAGAACTTCAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTTATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGTTACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTTGTTGTGCATAATGCTAGTGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATTGCACATAATGTTTCCACCAGGAAGAGGAAAGAGATCGTCGAGCGAGCTGCACAGCTTGACGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTAAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTTCTCGAAGTGGATTTTGATACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTTGTGGTGACAAAGTGGCTACGGTCATGTTAATTCTGT-NCATCTTCGTAATTTACTCTGAATGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307650" ref_strand="+" ref_description="SGN-E307650 [cLEY-16-L7]">
      <seq>tcagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtacacctttgtggtgacgaagtagctgtggtcatgctaattctgtctaatcttcgtaatttactctgaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38227" stop="35963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37927" g_stop="37907" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="138" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="320" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36263" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="665" r_length="345" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E307650" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37927" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGTGATAAAGTAGCTGTGGTCATGTTAATTCTGTCAAATCTGCGTAATTTACTCTGGATGA</genome_strand>
        <mrna_strand>TCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGTGACGAAGTAGCTGTGGTCATGCTAATTCTGTCTAATCTTCGTAATTTACTCTGAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353897" ref_strand="+" ref_description="SGN-E353897 [cTOS-10-I10]">
      <seq>tagagtgaggagaaagtcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtacacctttgtggtgacgaagtagctgtggtcatgctaattctgtctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="37161" stop="35986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36861" g_stop="36712" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36607" g_stop="36277" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="480" r_length="331" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E353897" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36861" e_stop="36712"/>
          <exon e_start="36607" e_stop="36277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGTGATAAAGTAGCTGTGGTCATGTTAATTCTGTCAAATCTGCGTAA</genome_strand>
        <mrna_strand>TAGAGTGAGGAGAAAGT-CAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGTGACGAAGTAGCTGTGGTCATGCTAATTCTGTCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E454937" ref_strand="+" ref_description="SGN-E454937 [cSTS-24-H10]">
      <seq>agcagaaaccctagttccaaaggtaaggtaaggtagaacttcaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggtttattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggttacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagtttgttgtgcataatgctagtgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaattgcacataatgtttccaccaggaagaggaaagagatcgtcgagcgagctgcacagcttgacgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagattagatctctatattgtttaagtgtttgaacctgttccttgtgttttgtttaattaatactctgtttttctcgaagtggattttgatacatcctattgctatcaaatgcttaaattttcagattttagtacaccttttgtggtgacaaagtggctacggtcatgttaattctgtcaatctttcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38225" stop="35983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37925" g_stop="37907" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="136" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="318" r_length="182" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36279" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="649" r_length="331" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E454937" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E454937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37925" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTG-TTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACC-TTTGTGGTGATAAAGTAGCTGTGGTCATGTTAATTCTGTCAAATCTGCGT</genome_strand>
        <mrna_strand>AGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGGTAAGGTAGAACTTCAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTTATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGTTACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTTGTTGTGCATAATGCTAGTGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATTGCACATAATGTTTCCACCAGGAAGAGGAAAGAGATCGTCGAGCGAGCTGCACAGCTTGACGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATTAGATCTCTATATTGTTTAAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTTCTCGAAGTGGATTTTGATACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTTGTGGTGACAAAGTGGCTACGGTCATGTTAATTCTGTCAATCTTTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310216" ref_strand="+" ref_description="SGN-E310216 [cLEZ-8-L4]">
      <seq>gaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtacacctttgtggtgacgaagtagctgtggtcatgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38137" stop="35997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37921" g_stop="37907" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="132" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="314" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36297" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="625" r_length="311" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E310216" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37921" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36297"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGTGATAAAGTAGCTGTGGTCATGTTA</genome_strand>
        <mrna_strand>GAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGTGACGAAGTAGCTGTGGTCATGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E620794" ref_strand="-" ref_description="SGN-E620794 [71499]">
      <seq>agaggaaaggaagaagaattagagcagaaaccctagttccaaaggtaaggtaaggtagaaccttcaacaatggccgtgcctctgcttaccaagaaggtcgtgaagaagagagtgaagaggtttattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagaccccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggttacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagtttgttgtgcataatgctagtgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaattgcacataatgtttccaccaggaagaggaaagagatcgtcgagcgagctgcacagcttgacgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgtttaagtgtttgaacctgttccttgtgttttgtttaattaatactctgtttttctcgaagtggattttgatacatcctattgctatcaaatgcttaaattttcagattttagtacaccttttgtggtgacaaagtggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38225" stop="36009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37923" g_stop="37907" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="41" r_length="17" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="159" r_length="118" r_score="0.932"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="342" r_length="183" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36309" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="643" r_length="301" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E620794" ref_strand="-">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E620794" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="37923" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAA-CAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGA-CCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTG-TTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACC-TTTGTGGTGATAAAGTAGCT</genome_strand>
        <mrna_strand>CAGAAACCCTAGTTCCA................................................................................AAGGTAAGGTAAGGTAGAACCTTCAACAATGGCCGTGCCTCTGCTTACCAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTTATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGTTACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTTGTTGTGCATAATGCTAGTGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATTGCACATAATGTTTCCACCAGGAAGAGGAAAGAGATCGTCGAGCGAGCTGCACAGCTTGACGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTAAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTTCTCGAAGTGGATTTTGATACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTTGTGGTGACAAAGTGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735292" ref_strand="+" ref_description="SGN-E735292 [LB14DG08]">
      <seq>tatcggctcagcagaaaccctagttcgaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgtcgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttgtgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtacacctttgtggtgataaagtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38234" stop="36012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37934" g_stop="37907" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="145" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="327" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36312" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="623" r_length="296" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="624" polyA_stop="633"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E735292" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37934" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCGGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGTGATAAAGTA</genome_strand>
        <mrna_strand>TATCGGCTCAGCAGAAACCCTAGTTCGA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGTGATAAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E303651" ref_strand="+" ref_description="SGN-E303651 [cLEY-6-I5]">
      <seq>tcagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtacacctttgtggtgacgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38227" stop="36015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37927" g_stop="37907" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="138" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="320" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36320" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="608" r_length="288" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="612" polyA_stop="621"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E303651" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37927" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGTG</genome_strand>
        <mrna_strand>TCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E303604" ref_strand="+" ref_description="SGN-E303604 [cLEY-6-I5](-)">
      <seq>gtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttaggacacctttgtggtgacgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="37171" stop="36015"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36871" g_stop="36712" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36607" g_stop="36320" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="448" r_length="288" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E303604" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36871" e_stop="36712"/>
          <exon e_start="36607" e_stop="36320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGTG</genome_strand>
        <mrna_strand>GTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGGACACCTTTGTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E719653" ref_strand="+" ref_description="SGN-E719653 [FC08CA02]">
      <seq>aagaatccctgtcaaggaaagctggctcatacccaagggtattgattctaaagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaacaagactcgccactatcttcccaatggcttcaagaagttcgtcgtgcataatgctaccgagcttgagatcctaatgatgcacaacagaacttactgtgcaaaaatcgcacacaatgtttccactacgaagaggaaagagattgtcaagcgagctgcccaacttgatgttgtcgtaacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttgtgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcacattttaatacacctttgtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="37201" stop="36021"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="198" r_length="182" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36607" g_stop="36321" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="485" r_length="287" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E719653" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGT</genome_strand>
        <mrna_strand>GAAAGCTGGCTCATACCCAAGGGTATTGATTCTAAAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAACAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTACCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAAAAATCGCACACAATGTTTCCACTACGAAGAGGAAAGAGATTGTCAAGCGAGCTGCCCAACTTGATGTTGTCGTAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCACATTTTAATACACCTTTGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E711393" ref_strand="+" ref_description="SGN-E711393 [FB01DE11]">
      <seq>gttagcggctcagcagaaaccctagttcgaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgtcgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttgtgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38236" stop="36031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37936" g_stop="37907" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="147" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="329" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36325" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="612" r_length="283" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E711393" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37936" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGCGGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTG</genome_strand>
        <mrna_strand>GTTAGCGGCTCAGCAGAAACCCTAGTTCGA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338382" ref_strand="+" ref_description="SGN-E338382 [cTOE-15-C7]">
      <seq>gcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtacacctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38224" stop="36025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37924" g_stop="37907" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="135" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="317" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36325" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="600" r_length="283" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E338382" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37924" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTG</genome_strand>
        <mrna_strand>GCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339996" ref_strand="+" ref_description="SGN-E339996 [cTOF-3-M15]">
      <seq>tcagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38227" stop="36031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37927" g_stop="37907" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="138" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="320" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36328" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="600" r_length="280" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E339996" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37927" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCT</genome_strand>
        <mrna_strand>TCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E558981" ref_strand="+" ref_description="SGN-E558981 [18407]">
      <seq>ctgcttaacaagaaggtcgtgaagaagagagtgaagaggtttattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggttacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagtttgttgtgcataatgctagtgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaattgcacataatgtttccaccaggaagaggaaagagatcgtcgagcgagctgcccagcttgacgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgtttaagtgtttgaacctgttccttgtgttttgtttaattaatactctgtttttcccgaagtggattttgatacatcctattgctatcaaatgcttaaattttcagattttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38087" stop="36031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37787" g_stop="37710" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="260" r_length="182" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36607" g_stop="36329" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="540" r_length="280" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E558981" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37787" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTG-TTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACC</genome_strand>
        <mrna_strand>CTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTTATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGTTACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTTGTTGTGCATAATGCTAGTGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATTGCACATAATGTTTCCACCAGGAAGAGGAAAGAGATCGTCGAGCGAGCTGCCCAGCTTGACGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTAAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTTCCCGAAGTGGATTTTGATACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E563149" ref_strand="+" ref_description="SGN-E563149 [1502]">
      <seq>attcggcacgagggtttattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggttacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagtttgttgtgcataatgctagtgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaattgcacataatgtttccaccaggaagaggaaagagatcgtcgagcgagctgcccagcttgacgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgtttaagtgtttgaacctgttccttgtgttttgtttaattaatactctgtttttcccgaagtggattttgatacatcctattgctatcaaatgcttaaattttcagattttaaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38054" stop="36036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37763" g_stop="37710" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.815"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.86"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="235" r_length="182" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36607" g_stop="36330" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="513" r_length="278" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E563149" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E563149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37763" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTG-TTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACAC</genome_strand>
        <mrna_strand>ATTCGGCACGAG-GGTTTATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGTTACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTTGTTGTGCATAATGCTAGTGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATTGCACATAATGTTTCCACCAGGAAGAGGAAAGAGATCGTCGAGCGAGCTGCCCAGCTTGACGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTAAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTTCCCGAAGTGGATTTTGATACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA-AACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716720" ref_strand="+" ref_description="SGN-E716720 [FB17DD07]">
      <seq>gttagcggctcagcagaaaccctagttcgaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgtcgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttgtgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38236" stop="36031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37936" g_stop="37907" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="147" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="329" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36331" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="606" r_length="277" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="607" polyA_stop="616"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E716720" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37936" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGCGGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACA</genome_strand>
        <mrna_strand>GTTAGCGGCTCAGCAGAAACCCTAGTTCGA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284041" ref_strand="+" ref_description="SGN-E284041 [cLER-13-K9]">
      <seq>aaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattggtttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38137" stop="36031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37920" g_stop="37907" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="131" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="313" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36331" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="590" r_length="277" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="591" polyA_stop="606"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E284041" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37920" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACA</genome_strand>
        <mrna_strand>AAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGGTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E589842" ref_strand="+" ref_description="SGN-E589842 [43425]">
      <seq>cacaacagaacttactgtgcagaaattgcacataatgtttccaccaggaagaggaaagagatcgtcgagcgagctgcacagcttgacgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgtttaagtgtttgaacctgttccttgtgttttgtttaattaatactctgtttttctcgaagtggattttgatacatcctattgctatcaaatgcttaaattttcagattttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="36910" stop="36031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36719" g_stop="36712" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36607" g_stop="36331" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="286" r_length="278" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E589842" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E589842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36719" e_stop="36712"/>
          <exon e_start="36607" e_stop="36331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTG-TTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACA</genome_strand>
        <mrna_strand>CACAACAG........................................................................................................AACTTACTGTGCAGAAATTGCACATAATGTTTCCACCAGGAAGAGGAAAGAGATCGTCGAGCGAGCTGCACAGCTTGACGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTAAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTTCTCGAAGTGGATTTTGATACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738617" ref_strand="+" ref_description="SGN-E738617 [LC14BD02]">
      <seq>gcggctcagcagaaaccctagttcgaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgtcgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttgtgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38232" stop="36041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37932" g_stop="37907" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="143" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="325" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36333" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="600" r_length="275" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E738617" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37932" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTA</genome_strand>
        <mrna_strand>GCGGCTCAGCAGAAACCCTAGTTCGA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E309161" ref_strand="+" ref_description="SGN-E309161 [cLEZ-12-C5]">
      <seq>tcagcagaaaccctagttccaaaggtaagacaaggtataacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggcttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38227" stop="36033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37927" g_stop="37907" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="138" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="320" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36333" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="594" r_length="274" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E309161" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37927" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTA</genome_strand>
        <mrna_strand>TCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTATAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGC-TTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E297304" ref_strand="+" ref_description="SGN-E297304 [cLET-29-B10]">
      <seq>agcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38225" stop="36036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37925" g_stop="37907" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="136" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="318" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36333" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="593" r_length="275" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E297304" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37925" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTA</genome_strand>
        <mrna_strand>AGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293301" ref_strand="+" ref_description="SGN-E293301 [cLET-18-H13]">
      <seq>tagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagaatttagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38136" stop="36033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37914" g_stop="37907" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="125" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="307" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36333" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="582" r_length="275" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E293301" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37914" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTA</genome_strand>
        <mrna_strand>TAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGAATTTAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295398" ref_strand="+" ref_description="SGN-E295398 [cLET-23-F17]">
      <seq>ctcagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaaatggattttgacacatcctattgctatcaaatgcttaaattttcagattttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38228" stop="36035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37928" g_stop="37907" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="139" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="321" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36335" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="594" r_length="273" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E295398" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37928" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAG</genome_strand>
        <mrna_strand>CTCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAATGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E723636" ref_strand="+" ref_description="SGN-E723636 [FC21AG01]">
      <seq>gggcgattggcggccaatcggccgaattgctctctagcaaggagttagcggctcagcagaaaccctagttcgaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgtcgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttgtgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38250" stop="36031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37951" g_stop="37907" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="73" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="190" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="372" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36336" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="644" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="647" polyA_stop="684"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E723636" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37951" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTCTAGCAAGGAGTTAGCGGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>GCTCTCTAGCAAGGAGTTAGCGGCTCAGCAGAAACCCTAGTTCGA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716836" ref_strand="+" ref_description="SGN-E716836 [FB18AF12]">
      <seq>gttagcggctcagcagaaaccctagttcgaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgtcgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttgtgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctaccaaatgcttaaattttcagattttaannnanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38236" stop="36036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37936" g_stop="37907" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="147" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="329" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36336" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="601" r_length="272" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="606" polyA_stop="647"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E716836" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37936" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGCGGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>GTTAGCGGCTCAGCAGAAACCCTAGTTCGA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTACCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355517" ref_strand="+" ref_description="SGN-E355517 [cTOS-25-I12]">
      <seq>ttagcggctcagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtaaaaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38235" stop="36031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37935" g_stop="37907" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="146" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="328" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36336" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="600" r_length="272" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E355517" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37935" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCGGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>TTAGCGGCTCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340244" ref_strand="+" ref_description="SGN-E340244 [cTOF-2-N21]">
      <seq>agcggctcagcagaaaccctagttccaaagtaagacaaggtagaacaacacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagaagagtgaaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtgggatttgacacatcctattgctatcaaatgcttaaattttcagattttagtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38233" stop="36031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37933" g_stop="37907" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="144" r_length="117" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="326" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36336" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="598" r_length="272" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="601" polyA_stop="618"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E340244" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37933" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAG-AGAGTG-AAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>AGCGGCTCAGCAGAAACCCTAGTTCCA................................................................................AA-GTAAGACAAGGTAGAACAAC-ACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAAGAGTGAAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGGATTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E312648" ref_strand="+" ref_description="SGN-E312648 [cLEZ-20-F8]">
      <seq>gcggctcagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaagaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38232" stop="36041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37932" g_stop="37907" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="143" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="325" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36336" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="597" r_length="272" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E312648" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37932" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>GCGGCTCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAAGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348517" ref_strand="+" ref_description="SGN-E348517 [cTOF-30-H15]">
      <seq>cggctcagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaataatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38231" stop="36031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37931" g_stop="37907" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="142" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="324" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36336" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="595" r_length="271" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="596" polyA_stop="611"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E348517" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37931" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>CGGCTCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAA-TAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342953" ref_strand="+" ref_description="SGN-E342953 [cTOF-11-O4]">
      <seq>cggctcagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38231" stop="36031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37931" g_stop="37907" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="142" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="324" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36336" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="596" r_length="272" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="597" polyA_stop="608"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E342953" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37931" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>CGGCTCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E711158" ref_strand="+" ref_description="SGN-E711158 [FB01AF12]">
      <seq>cgcttgcagaaaccctagttcgaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgtcgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttgtgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38224" stop="36031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37930" g_stop="37907" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="140" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="322" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36336" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="594" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E711158" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37930" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>CGCT-TGCAGAAACCCTAGTTCGA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344797" ref_strand="+" ref_description="SGN-E344797 [cTOF-21-J22]">
      <seq>ctcagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38228" stop="36031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37928" g_stop="37907" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="139" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="321" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36336" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="593" r_length="272" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="596" polyA_stop="608"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E344797" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37928" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>CTCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716415" ref_strand="+" ref_description="SGN-E716415 [FB17AA01]">
      <seq>ctcagcagaaaccctagttcgaaaggtaagacaaggtagaacaacaacaatggccgtccctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgtcgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttgtgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38228" stop="36031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37928" g_stop="37907" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="139" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="321" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36336" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="593" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="594" polyA_stop="604"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E716415" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37928" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>CTCAGCAGAAACCCTAGTTCGA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTCCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734147" ref_strand="+" ref_description="SGN-E734147 [LB11DF06]">
      <seq>ctcttcagaaaccctagttcgaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgtcgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttgtgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38228" stop="36031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37928" g_stop="37907" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="139" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="321" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36336" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="593" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="594" polyA_stop="607"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E734147" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37928" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>CTCTTCAGAAACCCTAGTTCGA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355172" ref_strand="+" ref_description="SGN-E355172 [cTOS-18-O14]">
      <seq>tcagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgctttaattttcagattttagtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38227" stop="36031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37927" g_stop="37907" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="138" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="320" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36336" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="592" r_length="272" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="595" polyA_stop="609"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E355172" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37927" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>TCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTTAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348753" ref_strand="+" ref_description="SGN-E348753 [cTOF-29-M5]">
      <seq>tcagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38227" stop="36031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37927" g_stop="37907" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="138" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="320" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36336" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="592" r_length="272" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="595" polyA_stop="608"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E348753" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37927" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>TCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355038" ref_strand="+" ref_description="SGN-E355038 [cTOS-19-L12]">
      <seq>tcagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38227" stop="36031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37927" g_stop="37907" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="138" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="320" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36336" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="592" r_length="272" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="595" polyA_stop="606"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E355038" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37927" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>TCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732480" ref_strand="+" ref_description="SGN-E732480 [LB02BB08]">
      <seq>gtattacgtctatttcgcagaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgtcgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttgtgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38146" stop="36031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37846" g_stop="37710" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="319" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36607" g_stop="36336" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="591" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="594" polyA_stop="604"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E732480" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37846" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>GTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E545210" ref_strand="+" ref_description="SGN-E545210 [TUS-67-P2]">
      <seq>ggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38114" stop="36031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37814" g_stop="37710" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="287" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36607" g_stop="36336" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="559" r_length="272" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E545210" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37814" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>GGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310132" ref_strand="+" ref_description="SGN-E310132 [cLEZ-8-E5]">
      <seq>gtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38113" stop="36031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37813" g_stop="37710" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="286" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36607" g_stop="36336" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="558" r_length="272" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="559" polyA_stop="568"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E310132" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37813" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>GTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E545209" ref_strand="+" ref_description="SGN-E545209 [TUS-67-P2](-)">
      <seq>agaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttaaaaaagaaaaaaaaaaaaactcgaggggggcccgtacccaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38077" stop="36031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37777" g_stop="37710" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="250" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36607" g_stop="36336" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="522" r_length="272" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="523" polyA_stop="541"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E545209" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37777" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>AGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302773" ref_strand="+" ref_description="SGN-E302773 [cLEY-1-M9](-)">
      <seq>cgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatgggtttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38070" stop="36031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37770" g_stop="37710" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="244" r_length="183" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36607" g_stop="36336" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="516" r_length="272" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="517" polyA_stop="526"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E302773" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37770" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAAT-GGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>CGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGGTTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298973" ref_strand="+" ref_description="SGN-E298973 [cLET-42-M8]">
      <seq>gttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgtgttagtgtttgaacctgttccttttgctttgtttaattaatacatctgttttctccgaagtggattttgacacatncctattgctatcaaatgcttaaattttcagattttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38049" stop="36031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37749" g_stop="37710" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="222" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36607" g_stop="36336" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="497" r_length="275" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="498" polyA_stop="511"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E298973" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37749" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATAC-TCTGTTTTC-CCGAAGTGGATTTTGACACAT-CCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>GTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTGTTAGTGTTTGAACCTGTTCCTTTTGCTTTGTTTAATTAATACATCTGTTTTCTCCGAAGTGGATTTTGACACATNCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E230215" ref_strand="+" ref_description="SGN-E230215 [cLEL-33-P19](-)">
      <seq>tgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="37201" stop="36031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36901" g_stop="36712" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36607" g_stop="36336" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="461" r_length="272" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="462" polyA_stop="477"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E230215" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36901" e_stop="36712"/>
          <exon e_start="36607" e_stop="36336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>TGTTA-AGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352164" ref_strand="+" ref_description="SGN-E352164 [cTOS-13-E4]">
      <seq>cgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="37201" stop="36031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="200" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36607" g_stop="36336" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="472" r_length="272" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="475" polyA_stop="484"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E352164" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E226528" ref_strand="+" ref_description="SGN-E226528 [cLEL-26-H6](-)">
      <seq>ggcgcagacccaagggtattgattctagagtgagaagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaaaaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagaattaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="37186" stop="36031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36886" g_stop="36712" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36607" g_stop="36336" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="447" r_length="272" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="448" polyA_stop="464"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E226528" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36886" e_stop="36712"/>
          <exon e_start="36607" e_stop="36336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>GGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGAAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAAAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGAATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E218525" ref_strand="+" ref_description="SGN-E218525 [cLEL-18-C15](-)">
      <seq>agacccaagggtattgattctagagtaaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="37181" stop="36031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36881" g_stop="36712" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36607" g_stop="36336" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="442" r_length="272" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="443" polyA_stop="458"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E218525" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36881" e_stop="36712"/>
          <exon e_start="36607" e_stop="36336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>AGACCCAAGGGTATTGATTCTAGAGTAAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E226712" ref_strand="+" ref_description="SGN-E226712 [cLEL-26-I4](-)">
      <seq>agacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="37181" stop="36031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36881" g_stop="36712" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36607" g_stop="36336" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="442" r_length="272" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="445" polyA_stop="462"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E226712" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36881" e_stop="36712"/>
          <exon e_start="36607" e_stop="36336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>AGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E226327" ref_strand="+" ref_description="SGN-E226327 [cLEL-26-I4](-)">
      <seq>gacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="37180" stop="36031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36880" g_stop="36712" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36607" g_stop="36336" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="441" r_length="272" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="444" polyA_stop="461"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E226327" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36880" e_stop="36712"/>
          <exon e_start="36607" e_stop="36336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>GACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E222262" ref_strand="+" ref_description="SGN-E222262 [cLEL-16-D1](-)">
      <seq>atgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatccntaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttcccctaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="37137" stop="36031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36837" g_stop="36712" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36607" g_stop="36336" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="399" r_length="272" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="400" polyA_stop="416"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E222262" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36837" e_stop="36712"/>
          <exon e_start="36607" e_stop="36336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCC-TAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>ATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCNTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCCCTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E217869" ref_strand="+" ref_description="SGN-E217869 [cLEL-23-J7](-)">
      <seq>gtgtcttgatgcccaatattggatacgggtcagacaaaaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="37135" stop="36031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36835" g_stop="36712" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36607" g_stop="36336" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="397" r_length="272" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="398" polyA_stop="414"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E217869" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36835" e_stop="36712"/>
          <exon e_start="36607" e_stop="36336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAA-TGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>GTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAAAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E229993" ref_strand="+" ref_description="SGN-E229993 [cLEL-33-P19](-)">
      <seq>tgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="37126" stop="36031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36826" g_stop="36712" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36607" g_stop="36336" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="387" r_length="272" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="388" polyA_stop="403"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E229993" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36826" e_stop="36712"/>
          <exon e_start="36607" e_stop="36336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>TGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E216327" ref_strand="+" ref_description="SGN-E216327 [cLEL-13-C2](-)">
      <seq>ctcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="37093" stop="36031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36793" g_stop="36712" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36607" g_stop="36336" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="354" r_length="272" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="355" polyA_stop="373"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E216327" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36793" e_stop="36712"/>
          <exon e_start="36607" e_stop="36336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>CTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232444" ref_strand="+" ref_description="SGN-E232444 [cLEL-5-G1](-)">
      <seq>tatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagntttaagtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="37085" stop="36031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36785" g_stop="36712" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36607" g_stop="36336" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="346" r_length="272" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="349" polyA_stop="366"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E232444" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36785" e_stop="36712"/>
          <exon e_start="36607" e_stop="36336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>TATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGNTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E218225" ref_strand="+" ref_description="SGN-E218225 [cLEL-23-J7](-)">
      <seq>agttcgttgtgcataatgctagcgagcttgagatccttaatgatgcacaacagaaccttactgtgcagaaatcgncacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="37063" stop="36031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36763" g_stop="36712" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36607" g_stop="36336" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="327" r_length="274" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="328" polyA_stop="344"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E218225" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218225" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36763" e_stop="36712"/>
          <exon e_start="36607" e_stop="36336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCC-TAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAA-CTTACTGTGCAGAAATCG-CACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>AGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTTAATGATGCACAACAG........................................................................................................AACCTTACTGTGCAGAAATCGNCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232368" ref_strand="+" ref_description="SGN-E232368 [cLEL-5-G1](-)">
      <seq>actgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcagattttagtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="36902" stop="36031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36602" g_stop="36336" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="270" polyA_stop="287"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E232368" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>267</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36602" e_stop="36336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>ACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E222679" ref_strand="+" ref_description="SGN-E222679 [cLEL-16-D1](-)">
      <seq>ccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccagtaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgatccttatgttttgtttaattaaaactctgttgtccccaagtggattttgacacatcctattgctatcaaatgcttaaattttcagaatttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="36838" stop="36031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36538" g_stop="36336" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="204" polyA_stop="220"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E222679" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>203</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36538" e_stop="36336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTA</genome_strand>
        <mrna_strand>CCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGTAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGATCCTTATGTTTTGTTTAATTAAAACTCTGTTGTCCCCAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E597319" ref_strand="-" ref_description="SGN-E597319 [40820]">
      <seq>caagaagacttcgccactatcttcccaatggcttcaagaagtttgttgtgcataatgctagtgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaattgcacataatgtttccaccaggaagaggaaagagatcgtcgagcgagctgcacagcttgacgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgtttaagtgtttgaacctgttccttgtgttttgtttaattaatactctgtttttctcgaagtggattttgatacatcctattgctatcaaatgcttaaattttcagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="37101" stop="36040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36801" g_stop="36712" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36607" g_stop="36340" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="360" r_length="269" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E597319" ref_strand="-">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E597319" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="36801" e_stop="36712"/>
          <exon e_start="36607" e_stop="36340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAAGAC-TCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTG-TTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGAT</genome_strand>
        <mrna_strand>CAAGAAGACTTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTTGTTGTGCATAATGCTAGTGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATTGCACATAATGTTTCCACCAGGAAGAGGAAAGAGATCGTCGAGCGAGCTGCACAGCTTGACGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTAAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTTCTCGAAGTGGATTTTGATACATCCTATTGCTATCAAATGCTTAAATTTTCAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733216" ref_strand="+" ref_description="SGN-E733216 [LB04BB08]">
      <seq>ggctcagcagaaaccctagttcgaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgtcgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttgtgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38230" stop="36041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37930" g_stop="37907" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="141" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="323" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36342" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="589" r_length="266" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="590" polyA_stop="606"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E733216" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37930" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAG</genome_strand>
        <mrna_strand>GGCTCAGCAGAAACCCTAGTTCGA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727967" ref_strand="+" ref_description="SGN-E727967 [LA16BB08]">
      <seq>gctctttataaaccctaattcgaaaggtaggacaaggtagaacatctacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattacacctcagagtgaccgaacaatcactgtcaaggaaagctggcgcatacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgtcgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccgggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttgtgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcaaaaaaaaaacctcaaagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38137" stop="36041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37929" g_stop="37907" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.783"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="140" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.572" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="322" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36342" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="588" r_length="266" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E727967" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37929" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAG</genome_strand>
        <mrna_strand>GCTCTTTATAAACCCTAATTCGA................................................................................AAGGTAGGACAAGGTAGAACATCTACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTACACCTCAGAGTGACCGAACAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCATACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCGGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324616" ref_strand="+" ref_description="SGN-E324616 [cTOC-9-K9]">
      <seq>tcagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttccgaanaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38227" stop="36041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37927" g_stop="37907" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="138" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="320" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36342" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="586" r_length="266" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="587" polyA_stop="599"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E324616" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37927" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAG</genome_strand>
        <mrna_strand>TCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E221515" ref_strand="+" ref_description="SGN-E221515 [cLEL-10-D23](-)">
      <seq>gaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="37150" stop="36041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36850" g_stop="36712" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36607" g_stop="36342" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="405" r_length="266" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="406" polyA_stop="420"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E221515" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36850" e_stop="36712"/>
          <exon e_start="36607" e_stop="36342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAG</genome_strand>
        <mrna_strand>GAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E221918" ref_strand="+" ref_description="SGN-E221918 [cLEL-10-D23](-)">
      <seq>cttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaaatatgcacaacagaaccttactgtgcagaaatcgccacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="37071" stop="36041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36771" g_stop="36712" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36607" g_stop="36342" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="328" r_length="268" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="329" polyA_stop="343"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E221918" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36771" e_stop="36712"/>
          <exon e_start="36607" e_stop="36342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAA-CTTACTGTGCAGAAATCGC-ACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAG</genome_strand>
        <mrna_strand>CTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAAATATGCACAACAG........................................................................................................AACCTTACTGTGCAGAAATCGCCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E586243" ref_strand="+" ref_description="SGN-E586243 [60296]">
      <seq>aacttactgtgcagaaattgcacataatgtttccaccaggaagaggaaagagatcgtcgagcgagctgcccagcttgacgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgtttaagtgtttgaacctgttccttgtgttttgtttaattaatactctgtttttcccgaagtggattttgatacatcctattgctatcaaatgcttaaattttcaaaaaaaaaaaaaaaaaaactcgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="36907" stop="36041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36607" g_stop="36342" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="268" polyA_stop="285"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E586243" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E586243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36607" e_stop="36342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGT-TTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAG</genome_strand>
        <mrna_strand>AACTTACTGTGCAGAAATTGCACATAATGTTTCCACCAGGAAGAGGAAAGAGATCGTCGAGCGAGCTGCCCAGCTTGACGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTAAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTTCCCGAAGTGGATTTTGATACATCCTATTGCTATCAAATGCTTAAATTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E615077" ref_strand="-" ref_description="SGN-E615077 [64872]">
      <seq>gcttagcagaaaccctagttccaaaggtaaggtaaggtagaacttcaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggtttattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggttacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagtttgttgtgcataatgctagtgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaattgcacataatgtttccaccaggaagaggaaagagatcgtcgagcgagctgcacagcttgacgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgtttaagtgtttgaacctgttccttgtgttttgtttaattaatactctgtttttctcgaagtggattttgatacatcctattgctatcaaatgcttaaattttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38229" stop="36043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37929" g_stop="37907" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="140" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="322" r_length="182" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36343" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="588" r_length="266" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E615077" ref_strand="-">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E615077" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="37929" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTG-TTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCA</genome_strand>
        <mrna_strand>GCTTAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGGTAAGGTAGAACTTCAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTTATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGTTACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTTGTTGTGCATAATGCTAGTGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATTGCACATAATGTTTCCACCAGGAAGAGGAAAGAGATCGTCGAGCGAGCTGCACAGCTTGACGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTAAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTTCTCGAAGTGGATTTTGATACATCCTATTGCTATCAAATGCTTAAATTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E297892" ref_strand="-" ref_description="SGN-E297892 [cLET-38-E24]">
      <seq>caaacttcctgacgcttggactcccaagctggcggctcagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38237" stop="36044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37931" g_stop="37907" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="57" r_length="25" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="174" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="356" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36344" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="620" r_length="264" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E297892" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297892" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="37931" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36344"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTC</genome_strand>
        <mrna_strand>CGGCTCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725253" ref_strand="+" ref_description="SGN-E725253 [FC26CB10]">
      <seq>aacaacaacaatggccgtgcctctgcttaacaggaaggtcgtgaagaagagagtgaaaaggttcattagacctcaaagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgtcgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcaaaaatcgaacacaatgtttccactaggaataggaaagagattgtcgagcgatctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttaaatgagatctctatattgttttagtgtttgaacctgttccttgtgttttgtttaattaatactctgttttcccaaagtgaattttgacacatcctattgctatcaaatgcttaaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38109" stop="36045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37809" g_stop="37710" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="282" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36607" g_stop="36345" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="545" r_length="263" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E725253" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37809" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTT</genome_strand>
        <mrna_strand>AACAACAACAATGGCCGTGCCTCTGCTTAACAGGAAGGTCGTGAAGAAGAGAGTGAAAAGGTTCATTAGACCTCAAAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAAAAATCGAACACAATGTTTCCACTAGGAATAGGAAAGAGATTGTCGAGCGATCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAAATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCAAAGTGAATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311185" ref_strand="+" ref_description="SGN-E311185 [cLEZ-16-P20]">
      <seq>gcggctcagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacacatcctattgctatcaaatgcttaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38232" stop="36046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37932" g_stop="37907" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="143" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="325" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36346" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="587" r_length="262" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E311185" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37932" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTT</genome_strand>
        <mrna_strand>GCGGCTCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E713631" ref_strand="+" ref_description="SGN-E713631 [FB09AG01]">
      <seq>gcggctcagcagaaaccctagttcgaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgtcgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttgtgttttgtttaattaatactctgttttcccgaagtggattttgacnnnnaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38232" stop="36076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37932" g_stop="37907" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="143" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="325" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36374" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="559" r_length="234" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="562" polyA_stop="575"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E713631" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37932" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACAC</genome_strand>
        <mrna_strand>GCGGCTCAGCAGAAACCCTAGTTCGA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E556392" ref_strand="+" ref_description="SGN-E556392 [cTSD-3-F2]">
      <seq>agacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcccgaagtggattttgacaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38120" stop="36073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37820" g_stop="37710" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="293" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36607" g_stop="36374" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="527" r_length="234" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="528" polyA_stop="549"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E556392" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37820" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACAC</genome_strand>
        <mrna_strand>AGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289388" ref_strand="+" ref_description="SGN-E289388 [cLET-3-G3]">
      <seq>agcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagtcaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgcttgaacctgttccttttggtttgtttaattaatactctgttttcccgaagtggattttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38225" stop="36076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37925" g_stop="37907" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="136" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="318" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36376" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="550" r_length="232" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E289388" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37925" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGAC</genome_strand>
        <mrna_strand>AGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGTCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGCTTGAACCTGTTCCTTTTGGTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E564371" ref_strand="+" ref_description="SGN-E564371 [2620]">
      <seq>gttcgcggcttagcagaaaccctagttccaaaggtaaggtaaggtagaacttcaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggtttattagacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggttacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagtttgttgtgcataatgctagtgagcttgagatcctaagtgatgcacaacagaacttactgtgcagaaattgcacataatgtttccaccaggaagaggaaagagatcgtcgagcgagctgcacagcttgacgttgtcataacaaacaagcttgctaggttgcacagccagcgaggatgaatgagcattttggctttagatgagatctctatattgtttaagtgtttgaacctgttccttgtgttttgtttaattaatactctgttttctcgaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38236" stop="36088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37936" g_stop="37907" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="147" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="330" r_length="183" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36382" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="557" r_length="227" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E564371" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E564371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37936" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGCGGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAA-TGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAG-GAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGAT</genome_strand>
        <mrna_strand>GTTCGCGGCTTAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGGTAAGGTAGAACTTCAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTTATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGTTACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTTGTTGTGCATAATGCTAGTGAGCTTGAGATCCTAAGTGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATTGCACATAATGTTTCCACCAGGAAGAGGAAAGAGATCGTCGAGCGAGCTGCACAGCTTGACGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGCGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTAAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCTCGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203016" ref_strand="+" ref_description="SGN-E203016 [cLEB-1-J4]">
      <seq>gcacgagtagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttccttttgttttgtttaattaatactctgttttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38141" stop="36092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="132" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="314" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36607" g_stop="36392" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="530" r_length="216" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E203016" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCC</genome_strand>
        <mrna_strand>AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTTTGTTTTGTTTAATTAATACTCTGTTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E304960" ref_strand="+" ref_description="SGN-E304960 [cLEX-10-P21]">
      <seq>gaattcgcacgagggcggtcacaaaaccctattcaaaggtagacaggtgaaccacaatggcggccttgttaacagaagcggaaaaagaggagaggtattaacctaaggaccgaagaatcactgtaagaaagctggcgcaacccaagggtttgatttaaggaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactacgaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacatccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagcgtttgaacctgttccttttgttatgtttaattaatactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38106" stop="36099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="127" r_length="92" r_score="0.786"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.82"/>
            <acceptor a_prob="0.572" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="303" r_length="176" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36607" g_stop="36399" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="512" r_length="209" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E304960" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCT</genome_strand>
        <mrna_strand>AAGGTA-GAC-AGGT-GAAC--C-ACAATGGC-G-GCCT-TG-TTAAC-AGAA-G-CG-GAA-AA-AGAG-G-AGAGG-T-ATTA-ACCT-A-AG-GACCGAAGAATCACTGT-AAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-AAAGCTGGCGCA-ACCCAAGGGT-TTGATT-TA-AG-GAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTACGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACATCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGCGTTTGAACCTGTTCCTTTTGTTATGTTTAATTAATACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E719266" ref_strand="+" ref_description="SGN-E719266 [FC07BB08]">
      <seq>aggttcattacacctcagagtgaccgaaaaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgtcgtgcataatgctagcgagcttgagatcctaatgatgcacaacataacttactgtgcaaaattcgcacacaatgtttccactacgaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcccagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttaatgtttgaacctgttccttgggttttgttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38051" stop="36110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37751" g_stop="37710" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.95"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="224" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36607" g_stop="36410" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="422" r_length="198" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E719266" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37751" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTA</genome_strand>
        <mrna_strand>AGGTTCATTACACCTCAGAGTGACCGAAAAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAT........................................................................................................AACTTACTGTGCAAAATTCGCACACAATGTTTCCACTACGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCCCAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAATGTTTGAACCTGTTCCTTGGGTTTTGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299371" ref_strand="+" ref_description="SGN-E299371 [cLET-43-I17]">
      <seq>cggctcagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcatagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctatagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcatacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacagcagaacttactgtgcataaatcgcacacaatgtttccactaagaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattggtttagcgtttgaacctgttcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38231" stop="36122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37931" g_stop="37907" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="142" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.572" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="324" r_length="182" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36422" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="510" r_length="186" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E299371" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37931" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTT</genome_strand>
        <mrna_strand>CGGCTCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCATAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTATAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCATACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAGCAG........................................................................................................AACTTACTGTGCATAAATCGCACACAATGTTTCCACTAAGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGGTTTAGCGTTTGAACCTGTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202969" ref_strand="+" ref_description="SGN-E202969 [cLEB-1-O7]">
      <seq>gcacgagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattgttttagtgtttgaacctgttcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38229" stop="36122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37929" g_stop="37907" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.826"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="141" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="323" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36422" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="509" r_length="186" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E202969" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37929" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTC-AGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTT</genome_strand>
        <mrna_strand>GCACGAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311529" ref_strand="+" ref_description="SGN-E311529 [cTOA-6-I5]">
      <seq>cggctcagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatagcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactangaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatattggtttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38231" stop="36140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37931" g_stop="37907" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="142" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="324" r_length="182" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36440" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="492" r_length="168" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E311529" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37931" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAG</genome_strand>
        <mrna_strand>CGGCTCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATAGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTANGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGGTTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288096" ref_strand="+" ref_description="SGN-E288096 [cLES-7-G7]">
      <seq>gaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38137" stop="36147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37921" g_stop="37907" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="132" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="314" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36447" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="475" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E288096" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37921" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATT</genome_strand>
        <mrna_strand>GAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E335738" ref_strand="+" ref_description="SGN-E335738 [cTOE-8-H21]">
      <seq>tcagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctatgttgcacagccaggaggatgaatgagcattttggctttagatgagatctctatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38227" stop="36148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37927" g_stop="37907" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="138" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="320" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36448" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="480" r_length="160" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E335738" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37927" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATAT</genome_strand>
        <mrna_strand>TCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTATGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302772" ref_strand="+" ref_description="SGN-E302772 [cLEY-1-M9]">
      <seq>ggctcagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38230" stop="36149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37930" g_stop="37907" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="141" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="323" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36449" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="482" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E302772" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37930" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATA</genome_strand>
        <mrna_strand>GGCTCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265026" ref_strand="+" ref_description="SGN-E265026 [cLEI-2-K1]">
      <seq>agaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcttgaagaaaagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaataagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactatgaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaacaagcttgctaggttgcacagccaggaggatgaatgagcattttggctttagatgagatctctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38137" stop="36149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37922" g_stop="37907" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="133" r_length="117" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="315" r_length="182" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36449" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="474" r_length="159" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E265026" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37922" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATA</genome_strand>
        <mrna_strand>AGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCTTGAAGAAAAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAATAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTATGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E583888" ref_strand="+" ref_description="SGN-E583888 [9709]">
      <seq>ccgtattccaaaggtaaggtagggtacaacttcaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggtttattacacctcagagtgaccgaagaatcactgtcaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggttacgggtcagacaggaagaactcgccactatcttcccaagtggcttcaagaagtttgttgtgtcataatgcaagtgagcttgagatcctaatgatgcacaacagaacttactgtgcaggaaattgcacatagtgtttccaccaggaagaggaaagagatcgtcgagcgagtctgcccagcttgacgtagtcataacaaacaatgcttgactaggttgcaacagccaggaggatgaatgagcattttggcttaagatgagatctctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38136" stop="36150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37897" g_stop="37888" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="10" r_length="10" r_score="0.700"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37887" i_stop="37827" i_length="61">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="127" r_length="117" r_score="0.932"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="312" r_length="185" r_score="0.934"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.993" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36450" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="475" r_length="163" r_score="0.880"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E583888" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E583888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37897" e_stop="37888"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAG-ACTCGCCACTATCTTCCCAA-TGGCTTCAAGAAGTTCGTCGTG-CATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCA-GAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAG-CTGCCCAACTTGATGTTGTCATAACAAACAA-GCTTG-CTAGGTTGC-ACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTAT</genome_strand>
        <mrna_strand>CCGTATTCCA.............................................................AAGGTAAGGTAGGGTACAACTTCAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTTATTACACCTCAGAGTGACCGAAGAATCACTGTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGTTACGGGTCAGACAGGAAGAACTCGCCACTATCTTCCCAAGTGGCTTCAAGAAGTTTGTTGTGTCATAATGCAAGTGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGGAAATTGCACATAGTGTTTCCACCAGGAAGAGGAAAGAGATCGTCGAGCGAGTCTGCCCAGCTTGACGTAGTCATAACAAACAATGCTTGACTAGGTTGCAACAGCCAGGAGGATGAATGAGCATTTTGGCTTAAGATGAGATCTCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281287" ref_strand="-" ref_description="SGN-E281287 [cLEL-1-K18](-)">
      <seq>gcacgagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacggtggccgtgcctctgcttaacaagaccgtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaagaagaggaaagagattgtcgagcgagctgcccaacttgatgatggcataacaaacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38229" stop="36211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37929" g_stop="37907" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.826"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="141" r_length="117" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="323" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36511" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="420" r_length="97" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E281287" ref_strand="-">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281287" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="37929" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTC-AGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAG</genome_strand>
        <mrna_strand>GCACGAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACGGTGGCCGTGCCTCTGCTTAACAAGACCGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAAGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGATGGCATAACAAACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293613" ref_strand="+" ref_description="SGN-E293613 [cLET-15-H2]">
      <seq>cagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaacgaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaaggtcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactatgaagaggaaagagattgtcgagcgagctgcccaacttgatgttgtcataacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38137" stop="36215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37923" g_stop="37907" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="134" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="316" r_length="182" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36515" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="409" r_length="93" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E293613" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37923" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAA</genome_strand>
        <mrna_strand>CAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGGTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTATGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306100" ref_strand="+" ref_description="SGN-E306100 [cLEY-13-L11]">
      <seq>tcagcagaaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgatgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcacacaatgtttccactaggaagaggaaagagattgtctagcgagctgcccaacttgatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38227" stop="36225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37927" g_stop="37907" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="138" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="320" r_length="182" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36525" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="403" r_length="83" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E306100" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37927" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCAGAAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTG</genome_strand>
        <mrna_strand>TCAGCAGAAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGATGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCTAGCGAGCTGCCCAACTTGATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341212" ref_strand="+" ref_description="SGN-E341212 [cTOE-22-M17]">
      <seq>aaaccctagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgcagaaatcgcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38137" stop="36284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37920" g_stop="37907" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="131" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="313" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36607" g_stop="36584" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="337" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E341212" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37920" e_stop="37907"/>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCTAGTTCGAGTGAGTATTCTCTCTTCCAGTTTGTCTTCTTCATTCATCTATGTAAATTTTGCATCTAATGTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCAGAAATCGCACA</genome_strand>
        <mrna_strand>AAACCCTAGTTCCA................................................................................AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCAGAAATCGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336666" ref_strand="+" ref_description="SGN-E336666 [cTOE-4-F18]">
      <seq>taagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgaagaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaagaagactcgccactatcttcccaatggcttcaagaagttcgttgtgcataatgctagcgagcttgagatcctaatgatgcacaacagaacttactgtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38122" stop="36412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37822" g_stop="37710" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36893" g_stop="36712" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="295" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36607" g_stop="36595" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="308" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E336666" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37822" e_stop="37710"/>
          <exon e_start="36893" e_stop="36712"/>
          <exon e_start="36607" e_stop="36595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAGGTAATTTGATAAGCTCACTTAATCGTCACCTGATTTGTACTATAACTATGAGTTCTTAATTTATGAATGTCTTGTCATCCAACATGTTTTTCTTTCCTTGCCAGAACTTACTGTGCA</genome_strand>
        <mrna_strand>TAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTTGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG........................................................................................................AACTTACTGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281332" ref_strand="-" ref_description="SGN-E281332 [cLEL-1-B20](-)">
      <seq>gcacgagtagttccaaaggtaagacaaggtagaacaacaacaatggccgtgcctctgcttaacaagaaggtcgtgacgaagagagtgaagaggttcattagacctcagagtgaccgaagaatcactgttaaggaaagctggcgcagacccaagggtattgattctagagtgaggagaaagttcaagggatgtgtcttgatgcccaatattggatacgggtcagacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="38141" stop="36499"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37826" g_stop="37710" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="132" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.572" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36893" g_stop="36799" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="227" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E281332" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>212</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281332" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="37826" e_stop="37710"/>
          <exon e_start="36893" e_stop="36799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAGGTATACTCTTTTGCTTGAAATTTATTGGTTGAAACGTTGAATCTACATGAGTTTATTATTCGGCTCTTGCGGCTACCCAAATCCCTCTTTGTTGAATCTATATAGAATAATTGTGATGTGTTTGGTGTGATTTTTCCTTTTTGCTTCCCGATTTAACTATATTCTGTTTTTGCGTTTGATTATCTTCGATAAAGTGATATAATTTATGCGGAACTGTCTAGAAGGAGAAAATTAACCCTTGTAAGAATTTGTGTGTGTCCGAGTGTGTTGATTCCGTAAATGCGTTTACTTATTCTCTCTTGCATTCCATATGACTACATTTGATGGCTAAATTGCATATGGTTTTGTGTTTTGTAAGTGTTCTGCAAACACCTTTTATATGGTTTTTATCATTCTGTTGTTATTATCTTGTAGCATCATTCAGCCAAGTAAGACCTTTTAGTATTCAGCAACTGTTTGTTAATATATGTATGTCTTAGGGTGTTTGTACTGTGAAGTGATGGCTGTATAGTGGGTTGTTGTGGGGCTTGTCGAAGTTGTACTTGTTCTTGAATGCCACTGTCAATGGAGAATTATACCTACTCCACACTCTCATTTGAGGAAGAACTGTGATTCATCTACTAATTGGTTCAATATTATTTTTGGCTTTCTATTCTCTAGAAAAAAAGAAATGAATAACTGTATTGTTTTCCTATAGTTGGCTTACGGAATCATGTGAATTCATGTGGAGTTTCTTGTAGTCTTTTAGTTCTTCCAGTTGTATTTGGACTGGGCAAGCTTACTAATTGGACCTGAACATTCAACTTTTTATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAA</genome_strand>
        <mrna_strand>AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGACGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725306" ref_strand="+" ref_description="SGN-E725306 [FC26CH03]">
      <seq>gctcgttagggtttcggagaacacctctcgccggtagacgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaaattaggacagataaaacataccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaatacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggtgactggtggtagaaacaggggacgtgttggaatccttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggtaagggtagtaagccatgggtgtctctacctaaggggtaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatcataggttgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42420" stop="45171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42719" g_stop="42799" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="158" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="339" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="437" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44420" g_stop="44871" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="889" r_length="452" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E725306" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>890</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42719" e_stop="42799"/>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGTTAGGGTTTAGGAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACT</genome_strand>
        <mrna_strand>GCTCGTTAGGGTTTCGGAGA-ACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGTAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E718927" ref_strand="+" ref_description="SGN-E718927 [FC06BA05]">
      <seq>gggcgattggcggccaatcggccgaattcccatggggatccgatatctcgttagggtttaggagacacacctctcgccggtagacgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaaattaggacagataaaacataccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaatacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggtgactggtggtagaaacaggggacgtgttggaatccttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggtaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42418" stop="45107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42728" g_stop="42799" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="126" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="204" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="385" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="483" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44420" g_stop="44807" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="871" r_length="388" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E718927" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42728" e_stop="42799"/>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTAGGAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTG</genome_strand>
        <mrna_strand>GGTTTAGGAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E718844" ref_strand="+" ref_description="SGN-E718844 [FC06AA06]">
      <seq>gggcgattggcggccaatcggccgaattcccatggggatccgatatctcgttagggtttaggagacacacctctcgccggtagacgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaaattaggacagataaaacataccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaatacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggtgactggtggtagaaacaggggacgtgttggaatccttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggtaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42418" stop="45106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42728" g_stop="42799" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="126" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="204" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="385" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="483" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44420" g_stop="44806" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="870" r_length="387" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E718844" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42728" e_stop="42799"/>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTAGGAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATT</genome_strand>
        <mrna_strand>GGTTTAGGAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E556188" ref_strand="+" ref_description="SGN-E556188 [cTSD-2-K8]">
      <seq>attaggagacacacctctcgccggtagccgtcactcgcctcatttaatcagtcggaaaaccgccaaaatggctagagggttgaataaacatttgaagaggctcattgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaatccttcttctggtcctcataattcaagggaatgtttgccactggttattatcctcaggaaccggtgtgaaatatgcattgacataccgcgaggtcatttctatcttgatgcatcgccaagtgatggttgatgggaaaattaggacagatgagacgtaccctgctggtttcatggacgttgttacgattccaaagacaactgagagtttcagacttctttatgacgctaagggtcgattccctctccactcactctgagatgatgaagccaagttcaaactttgcaaggttcgatcagcgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggtgactggtggtagaaacaggggacgtgttggaatccttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggtaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42431" stop="45141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42730" g_stop="42799" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="148" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="330" r_length="182" r_score="0.945"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.600" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="428" r_length="98" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44420" g_stop="44841" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="850" r_length="422" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E556188" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42730" e_stop="42799"/>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGGAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGT-TGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGC</genome_strand>
        <mrna_strand>ATTAGGAGACACACCTCTCGCCGGTAGCCGTCACTCGCCTCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGAGGGTTGAATAAACATTTGAAGAGGCTCATTGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAATCCTTCTTCTGGTCCTCATAATTCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTGTGAAATATGCATTGACATACCGCGAGGTCATTTCTATCTTGATGCATCGCCAAGTGATGGTTGATGGGAAAATTAGGACAGATGAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAACTGAGAGTTTCAGACTTCTTTATGACGCTAAGGGTCGATTCCCTCTCCACTCACTCTGAGATGATGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGCGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E556280" ref_strand="+" ref_description="SGN-E556280 [cTSD-2-P24]">
      <seq>tttaggagacacacctctcgccggtagccgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggtgactggtggtagaaacaggggacgtgttggaatccttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggtaagggtagtaagccctgggtgtctctacctaaagggtaaggtatcaagttatctatcattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42430" stop="45108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42730" g_stop="42799" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="148" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="329" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="427" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44420" g_stop="44808" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="816" r_length="389" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E556280" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42730" e_stop="42799"/>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGGAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGA</genome_strand>
        <mrna_strand>TTTAGGAGACACACCTCTCGCCGGTAGCCGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCCTGGGTGTCTCTACCTAAAGGGTAAGGTATCAAGTTATCTATCATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E214317" ref_strand="+" ref_description="SGN-E214317 [cLEC-77-N4]">
      <seq>ttaggagacacacctctcgccggtagccgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaagccaatgacaccatcaagctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42431" stop="51755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42731" g_stop="42799" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="147" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="328" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="426" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44420" g_stop="44546" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="552" r_length="126" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E214317" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42731" e_stop="42799"/>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGG</genome_strand>
        <mrna_strand>TTAGGAGACACACCTCTCGCCGGTAGCCGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAA-GCCAATGACACCATCAAGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336824" ref_strand="+" ref_description="SGN-E336824 [cTOE-5-B2]">
      <seq>ttaggagacacacctctcgccggtagccgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42431" stop="44199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42731" g_stop="42799" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="147" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43730" g_stop="43899" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="317" r_length="170" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E336824" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42731" e_stop="42799"/>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGC</genome_strand>
        <mrna_strand>TTAGGAGACACACCTCTCGCCGGTAGCCGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699419" ref_strand="+" ref_description="SGN-E699419 [FA10AA02]">
      <seq>cccattacacctctcgccggtagacgtcactcgccgcatttcctctatcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaaattaggacagataaaacataccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaatacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggtgactggtggataaaacaggggacctgttggaatccttaagaatccacacaaccaccagggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42440" stop="44968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42734" g_stop="42799" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.848"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="144" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="325" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="423" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44420" g_stop="44668" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="672" r_length="249" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E699419" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42734" e_stop="42799"/>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGT</genome_strand>
        <mrna_strand>CCCATTACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTCCTCTATCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGATAAAACAGGGGACCTGTTGGAATCCTTAAGAATCCACACAACCACCAGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311549" ref_strand="+" ref_description="SGN-E311549 [cTOA-6-O7]">
      <seq>ggagacacacctctcgccggtagccgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42434" stop="44595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42734" g_stop="42799" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="144" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="325" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="423" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44420" g_stop="44432" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="436" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E311549" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42734" e_stop="42799"/>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCA</genome_strand>
        <mrna_strand>GGAGACACACCTCTCGCCGGTAGCCGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E701836" ref_strand="+" ref_description="SGN-E701836 [FA17AC11]">
      <seq>gagacacacctctcgccggtagacgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaaattaggacagataaaacataccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaatacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggtgactggtggtagaaacaggggacgtgttggaatccttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggtaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctncatcagctacaactgcttaaaaatcatangttgaacttgagatgaatttaaataggtcggtaatatttctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42435" stop="45207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42735" g_stop="42799" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="143" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="324" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="422" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44420" g_stop="44907" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="910" r_length="488" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E701836" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>910</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42735" e_stop="42799"/>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGTAATATTTCTCTT</genome_strand>
        <mrna_strand>GAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTNCATCAGCTACAACTGCTTAAAAATCATANGTTGAACTTGAGATGAATTTAAATAGGTCGGTAATATTTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314204" ref_strand="+" ref_description="SGN-E314204 [cTOA-21-C23]">
      <seq>gagacacacctctcgccggtagccgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggtgactggtggtagaaacaggggacgtgttggaatccttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42435" stop="45019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42735" g_stop="42799" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="143" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="324" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="422" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44420" g_stop="44719" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="722" r_length="300" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E314204" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42735" e_stop="42799"/>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACT</genome_strand>
        <mrna_strand>GAGACACACCTCTCGCCGGTAGCCGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321089" ref_strand="+" ref_description="SGN-E321089 [cTOB-13-K1]">
      <seq>gagacacacctctcgccggtagccgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42435" stop="51759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42735" g_stop="42799" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="143" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="324" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="422" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44420" g_stop="44550" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="553" r_length="131" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E321089" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42735" e_stop="42799"/>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTT</genome_strand>
        <mrna_strand>GAGACACACCTCTCGCCGGTAGCCGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270950" ref_strand="+" ref_description="SGN-E270950 [cLEM-22-A1]">
      <seq>gagacacacctctcgccggtagccgtcactcgccgcatttaatcaggcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaaaggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42435" stop="51730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42735" g_stop="42799" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="143" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="324" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="422" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44420" g_stop="44521" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="524" r_length="102" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E270950" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42735" e_stop="42799"/>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATC</genome_strand>
        <mrna_strand>GAGACACACCTCTCGCCGGTAGCCGTCACTCGCCGCATTTAATCAGGCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAAGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322402" ref_strand="+" ref_description="SGN-E322402 [cTOB-24-J2]">
      <seq>gagacacacctctcgccggtagccgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgtaagtgacatgtctttcctaagtctttttttttatagtactacttagtttcctgcttcttgacttgactgttctctttggtctctacttcaggctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctgggttcatgggtaagaacacctcccattggattgttttttcattttcaaaccttttagatatagtttccctatatctgtactgtctagggttttgttcatttccagacgaaagtaataatactgatttcatctatatacacgtatttcccccattccaaagacnatagntgatctgtgtacaaaaaattcatgaaaatcatttgagagtctctttaattcttttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42435" stop="44426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42735" g_stop="42799" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43558" g_stop="44126" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="634" r_length="569" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E322402" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42735" e_stop="42799"/>
          <exon e_start="43558" e_stop="44126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCT-CCATTGGATTGTTTTTTCA-TTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTA-GGTATTGTTCA-TTCCAGACGAAAGTAATAATACTGA-TTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTC</genome_strand>
        <mrna_strand>GAGACACACCTCTCGCCGGTAGCCGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTT-CCTAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGGTTCATGGGTAAGAACACCTCCCATTGGATTGTTTTTTCATTTTCAAACCTTTTAGA-TATAGTTTCCCTATATCTGTACTGTCTAGGGTTTTGTTCATTTCCAGACGAAAGTAATAATACTGATTTCATCTATATACACGTATTTCCCCCATTCCAAAGACNATAGNTGATCTGTGTACAAAAAA-TTCATGAAAA-TCAT-TTGAGAGTCTCTTTAATTCTTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E325893" ref_strand="+" ref_description="SGN-E325893 [cTOC-12-G21]">
      <seq>agacacacctctcgccggtagccgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42436" stop="51808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42736" g_stop="42799" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="142" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="323" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="421" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44420" g_stop="44599" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="601" r_length="180" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E325893" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42736" e_stop="42799"/>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTG</genome_strand>
        <mrna_strand>AGACACACCTCTCGCCGGTAGCCGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E303820" ref_strand="+" ref_description="SGN-E303820 [cLEX-4-F12]">
      <seq>agacacacctctcgccggtagccgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgtgtgtacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42436" stop="51698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42736" g_stop="42799" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="142" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="323" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="421" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44420" g_stop="44489" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="491" r_length="70" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E303820" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42736" e_stop="42799"/>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATG</genome_strand>
        <mrna_strand>AGACACACCTCTCGCCGGTAGCCGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTGTGTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319399" ref_strand="+" ref_description="SGN-E319399 [cTOB-15-M20]">
      <seq>agacacacctctcgccggtagccgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42436" stop="44595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42736" g_stop="42799" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="142" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="323" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="421" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44420" g_stop="44432" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="434" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E319399" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42736" e_stop="42799"/>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCA</genome_strand>
        <mrna_strand>AGACACACCTCTCGCCGGTAGCCGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E275846" ref_strand="+" ref_description="SGN-E275846 [cLEN-18-D16]">
      <seq>gacacacctctcgccggtagccgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataatattgttgacttcatcaaatttgatgttggtaatgtggtcatggtgactggtggtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42437" stop="44919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42737" g_stop="42799" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="141" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="322" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="420" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44420" g_stop="44619" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="620" r_length="200" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E275846" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42737" e_stop="42799"/>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAG</genome_strand>
        <mrna_strand>GACACACCTCTCGCCGGTAGCCGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAATATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307304" ref_strand="+" ref_description="SGN-E307304 [cLEY-12-F23]">
      <seq>acacacctctcgccggtagccgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42438" stop="51729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42738" g_stop="42799" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="140" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="321" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="419" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44420" g_stop="44520" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="520" r_length="101" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E307304" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42738" e_stop="42799"/>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCAT</genome_strand>
        <mrna_strand>ACACACCTCTCGCCGGTAGCCGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341631" ref_strand="+" ref_description="SGN-E341631 [cTOE-23-M10]">
      <seq>acacacctctcgtcggtagccgtcactcgccgcatgtaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42438" stop="44567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42738" g_stop="42799" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="140" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="321" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44188" g_stop="44267" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="401" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E341631" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42738" e_stop="42799"/>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTC</genome_strand>
        <mrna_strand>ACACACCTCTCGTCGGTAGCCGTCACTCGCCGCATGTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319525" ref_strand="+" ref_description="SGN-E319525 [cTOB-15-C18]">
      <seq>cacacctctcgccggtagccgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42439" stop="44595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42739" g_stop="42799" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="139" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="320" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="418" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44420" g_stop="44432" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="431" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E319525" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42739" e_stop="42799"/>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCA</genome_strand>
        <mrna_strand>CACACCTCTCGCCGGTAGCCGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337733" ref_strand="+" ref_description="SGN-E337733 [cTOE-17-L24]">
      <seq>acacctctcgccggtagccgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42440" stop="51757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42740" g_stop="42799" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="138" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="319" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="417" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44420" g_stop="44548" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="546" r_length="129" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E337733" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42740" e_stop="42799"/>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGAC</genome_strand>
        <mrna_strand>ACACCTCTCGCCGGTAGCCGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323017" ref_strand="+" ref_description="SGN-E323017 [cTOB-30-H10]">
      <seq>acctctcgccggtagccgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggtgactggtggtagaaacaggggacgtgttggaatcctttagaatagagagaagcacnagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42442" stop="45019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42742" g_stop="42799" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="136" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="317" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="415" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44420" g_stop="44719" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="715" r_length="300" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E323017" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42742" e_stop="42799"/>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACT</genome_strand>
        <mrna_strand>ACCTCTCGCCGGTAGCCGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTTAGAATAGAGAGAAGCACNAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366270" ref_strand="+" ref_description="SGN-E366270 [cLPT-1-B16]">
      <seq>acctctcgccggctgccgtcactcgcggcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaataggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42442" stop="51795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42742" g_stop="42799" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="136" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="317" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="415" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44420" g_stop="44586" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="582" r_length="167" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E366270" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42742" e_stop="42799"/>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGA</genome_strand>
        <mrna_strand>ACCTCTCGCCGGCTGCCGTCACTCGCGGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAATAGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E247051" ref_strand="+" ref_description="SGN-E247051 [cLEF-41-H3]">
      <seq>acctctcgccggtagccgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42442" stop="44595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42742" g_stop="42799" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="136" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="317" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="415" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44420" g_stop="44432" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="428" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E247051" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42742" e_stop="42799"/>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCA</genome_strand>
        <mrna_strand>ACCTCTCGCCGGTAGCCGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285583" ref_strand="+" ref_description="SGN-E285583 [cLES-5-M13]">
      <seq>tctcgccggtagccgtcactcgccgcatttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42445" stop="44760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42745" g_stop="42799" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="133" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="314" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="412" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44420" g_stop="44460" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="453" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E285583" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42745" e_stop="42799"/>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAA</genome_strand>
        <mrna_strand>TCTCGCCGGTAGCCGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E406380" ref_strand="+" ref_description="SGN-E406380 [PPI-3-J17]">
      <seq>cgccggcagctattcaatcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgttacgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactaagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactgggtggtagaaacaggggggcgtgtttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42465" stop="45018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42765" g_stop="42799" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.829"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="114" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="295" r_length="181" r_score="0.934"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="393" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44420" g_stop="44719" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="696" r_length="303" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E406380" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42765" e_stop="42799"/>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCC-GCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACT-GGTGGTAGAAACA-GGGGACGTG-TTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACT</genome_strand>
        <mrna_strand>CGCCGGCAGCTATTCAATCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTAAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGGTGGTAGAAACAGGGGGGCGTGTTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E468652" ref_strand="+" ref_description="SGN-E468652 [cSTB-5-O24]">
      <seq>cgccggcagctattcaatcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgttacgattccgaagactaatgagagctttcgacttctttatgacactaagggtcggttccgtctccactcactaagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42465" stop="44896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42765" g_stop="42799" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.829"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="114" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="295" r_length="181" r_score="0.934"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="393" r_length="98" r_score="0.918"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44420" g_stop="44596" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="570" r_length="177" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E468652" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42765" e_stop="42799"/>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCC-GCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAAT</genome_strand>
        <mrna_strand>CGCCGGCAGCTATTCAATCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCGAAGACTAATGAGAGCTTTCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTAAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E441459" ref_strand="+" ref_description="SGN-E441459 [cSTA-30-O14]">
      <seq>ggcagctattcaatcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgttacgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactaagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactggtggtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42469" stop="44919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42768" g_stop="42799" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.844"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="110" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="291" r_length="181" r_score="0.934"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="389" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44420" g_stop="44619" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="589" r_length="200" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E441459" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42768" e_stop="42799"/>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAG</genome_strand>
        <mrna_strand>GGCAGCTATTCAATCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTAAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGTGGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E399690" ref_strand="+" ref_description="SGN-E399690 [cSTC-2-I5]">
      <seq>ggcagctattcaatcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgttacgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactaagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42469" stop="44887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42768" g_stop="42799" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.844"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="110" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="291" r_length="181" r_score="0.934"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="389" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44420" g_stop="44587" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="557" r_length="168" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E399690" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E399690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42768" e_stop="42799"/>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGAT</genome_strand>
        <mrna_strand>GGCAGCTATTCAATCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTAAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476092" ref_strand="+" ref_description="SGN-E476092 [cSTB-43-E16]">
      <seq>ggcagctattcaatcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgttacgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactaagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcaagtttgacagaaaggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42469" stop="44819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42768" g_stop="42799" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.844"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="110" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="291" r_length="181" r_score="0.934"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="389" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44420" g_stop="44519" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="489" r_length="100" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E476092" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42768" e_stop="42799"/>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCA</genome_strand>
        <mrna_strand>GGCAGCTATTCAATCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTAAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAAGTTTGACAGAAAGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E412716" ref_strand="+" ref_description="SGN-E412716 [STM-16-P13]">
      <seq>cagctattcaatcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgttacgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactaagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaatagagagaagcacaagggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42470" stop="44969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42770" g_stop="42799" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.867"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="108" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="289" r_length="181" r_score="0.934"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="387" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44420" g_stop="44669" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="637" r_length="250" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E412716" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E412716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42770" e_stop="42799"/>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTA</genome_strand>
        <mrna_strand>CAGCTATTCAATCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTAAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E471139" ref_strand="+" ref_description="SGN-E471139 [cSTB-22-J15]">
      <seq>cagctattcaatcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgttacgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactaagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42470" stop="44816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42770" g_stop="42799" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.867"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="108" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="289" r_length="181" r_score="0.934"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="387" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44420" g_stop="44516" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="484" r_length="97" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E471139" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42770" e_stop="42799"/>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCC</genome_strand>
        <mrna_strand>CAGCTATTCAATCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTAAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E459564" ref_strand="+" ref_description="SGN-E459564 [cPRO-28-A24]">
      <seq>agctattcaatcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacacaaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacttaccctgctggtttcatggatgttgttacgattccaaagacgaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatctgtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42474" stop="44912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42771" g_stop="42799" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.862"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="107" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="288" r_length="181" r_score="0.945"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="386" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44420" g_stop="44612" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="579" r_length="193" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E459564" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42771" e_stop="42799"/>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTG</genome_strand>
        <mrna_strand>AGCTATTCAATCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCAAAGACGAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCTGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E460356" ref_strand="+" ref_description="SGN-E460356 [cPRO-30-F4]">
      <seq>gctattcaatcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgttacgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactaagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactggtggtagaaacagggggcgtgttggaatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42474" stop="44940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42772" g_stop="42799" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="106" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="287" r_length="181" r_score="0.934"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="385" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44420" g_stop="44643" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="609" r_length="224" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E460356" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E460356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42772" e_stop="42799"/>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCT</genome_strand>
        <mrna_strand>GCTATTCAATCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTAAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E275587" ref_strand="+" ref_description="SGN-E275587 [cLEN-10-P1]">
      <seq>tttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggtgactggtggtagaaacaggggacgtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42472" stop="44935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42772" g_stop="42799" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="106" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="287" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="385" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44420" g_stop="44635" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="601" r_length="216" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E275587" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42772" e_stop="42799"/>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTT</genome_strand>
        <mrna_strand>TTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E275582" ref_strand="+" ref_description="SGN-E275582 [cLEN-10-N1]">
      <seq>tttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagaccaatgagagtttcagacttctttatgacactaagggtcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42472" stop="44550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42772" g_stop="42799" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="106" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="287" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44188" g_stop="44250" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="350" r_length="63" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E275582" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42772" e_stop="42799"/>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGAT</genome_strand>
        <mrna_strand>TTTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACCAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E475760" ref_strand="+" ref_description="SGN-E475760 [cSTB-41-N17]">
      <seq>gctattcaatcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcatgaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgttacgattccgaagactaatgagagctttcgacttctttatgacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42474" stop="44539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42772" g_stop="42799" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="106" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="287" r_length="181" r_score="0.928"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44188" g_stop="44239" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="339" r_length="52" r_score="0.885"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E475760" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42772" e_stop="42799"/>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTATTTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATCGCTTTGTTCCTTTCGATTTACGCGCTCAAATTTATGTGTTGATATCATGTGGTGCTGGTTAATTTTAGGGATCGTATGGAGAAATAATCAATTGCATTAGTTACTGTTGCCACTAGATTTTAGTGTATACAGTTTTTTTTAATTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTATGTTGTACTGTATCCTACTTGATAGTTTTAATGAATACAACATTTGAATAGATTTTACGATTCTACAGATAAACCTTCTTAAAAAGTTAATTTTGTTACAAAATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGACCAAATTGGTCGTTACACAAAGTGAGACAAATCCCTAACTGCTGATTTAATGATAGTTTGAGGTTTGGACAGTTGATTTGTGTAGTATAAGTCCAAGTTATTTACTCGACGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTAGTGTTGTTTGACATGGACAGATTTTGATAAAAAACTGTGGAATAGCTCCCCTTTTTATTGTTGGTAAATTAACTTTTGTTCCTTTAGCTTTCATTTATATAAGTGGTATGATTTTTGCATTGAGGCTTTGGAAACATCATACTAACATGAATTTGGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACAC</genome_strand>
        <mrna_strand>GCTATTCAATCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCATGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCGAAGACTAATGAGAGCTTTCGACTTCTTTATGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E468857" ref_strand="+" ref_description="SGN-E468857 [cSTB-6-O6]">
      <seq>cggaaagacgcgccaaaatggcaagagggttgaagaaacattcgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgttacgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactaagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaatagagagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43248" stop="44959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="98" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="279" r_length="181" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="377" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44420" g_stop="44659" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="617" r_length="240" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E468857" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAG</genome_strand>
        <mrna_strand>GCAAGAGGGTTGAAGAAACATTCGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTAAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAATAGAGAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E563020" ref_strand="+" ref_description="SGN-E563020 [1351]">
      <seq>cgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttggataaacttggaggtgcttttgctcccaagccttcttctggntccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgtaatgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatctgtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctggatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactggtggtagaaacagggggcgttgttggaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43248" stop="44940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="97" r_length="79" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="279" r_length="182" r_score="0.917"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="377" r_length="98" r_score="0.918"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44420" g_stop="44641" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="601" r_length="224" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E563020" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E563020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTT-GATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGG-TCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCT-GATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACG-TGTTGGAATC</genome_strand>
        <mrna_strand>GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGNTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTAATGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCTGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTTGTTGGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E437848" ref_strand="+" ref_description="SGN-E437848 [cSTA-5-A24]">
      <seq>cgaggagagggttgaagaaaccatttgaagaggctcaatgcgcctaagcattggatgccttgataaacttggaggtgcttttgctcctaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgttacgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactaagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43261" stop="44898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="82" r_length="79" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="263" r_length="181" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="361" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44420" g_stop="44598" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="540" r_length="179" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E437848" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGAGGGTTGAAGAAA-CATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATG-CTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGT</genome_strand>
        <mrna_strand>GG-AGAGGGTTGAAGAAACCATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTAAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E474590" ref_strand="+" ref_description="SGN-E474590 [cSTB-37-E13]">
      <seq>cgagagctctcgccggcagctattcaatcggaaaacccgccaaaatggcaagagggttgaagaaaccatttgaagaggctcaatgcgccctaagcattggatgccttgataaaccttggaggtgccttttgctcctaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgaccagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgttacgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactaagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43248" stop="44854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43558" g_stop="43635" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="130" r_length="83" r_score="0.872"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="0.83"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="311" r_length="181" r_score="0.928"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="409" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44420" g_stop="44554" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="544" r_length="135" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E474590" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E474590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43558" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGAGGGTTGAAGAAA-CATTTGAAGAGGCTCAATGCG-CCTAAGCATTGGATG-CTTGATAAAC-TTGGAGGTG-CTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGAT</genome_strand>
        <mrna_strand>GCAAGAGGGTTGAAGAAACCATTTGAAGAGGCTCAATGCGCCCTAAGCATTGGATGCCTTGATAAACCTTGGAGGTGCCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACCAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTAAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E303033" ref_strand="+" ref_description="SGN-E303033 [cLEW-26-M4]">
      <seq>agaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaaaggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43271" stop="51722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43571" g_stop="43635" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="246" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="344" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44420" g_stop="44513" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="438" r_length="94" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E303033" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43571" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATC</genome_strand>
        <mrna_strand>AGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAAGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730435" ref_strand="+" ref_description="SGN-E730435 [LA24AE06]">
      <seq>actttaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaaattaggacagataaaacataccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaatacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggtgactggtggtagaaacaggggacgtgttggaatccttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggtaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatcataggttgaacttgagatgaatttaataggttcgggtaatatttctctttgtttagagggatgccattcttatttttgtgttgcattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43278" stop="45248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43577" g_stop="43635" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="240" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="338" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44420" g_stop="44948" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="868" r_length="530" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E730435" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43577" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACTTGAGATGAATTTAATAGGTTC-GGTAATATTTCTCTTTGTTTAGAGGGATGCCATTCTTATTTTTGTGTTGCATTTTG</genome_strand>
        <mrna_strand>ACTTTAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGGTAATATTTCTCTTTGTTTAGAGGGATGCCATTCTTATTTTTGTGTTGCATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E569916" ref_strand="+" ref_description="SGN-E569916 [14418]">
      <seq>cctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggcaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaggggtcggttccgtctccactcactcagagatgaggaggccaagttcaaacttttgtaaaggttcgatcagctgccggtttggacagaagggaatccatatcttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43297" stop="44777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43597" g_stop="43635" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="221" r_length="182" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="319" r_length="98" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.981" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44420" g_stop="44478" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="381" r_length="62" r_score="0.780"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E569916" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E569916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43597" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGG-AACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAAC-TTTG-CAAGGTTCGATCAG-TG-CAGTTTGGACAGAAGGGAATCCCATATCTCAA</genome_strand>
        <mrna_strand>CCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGCAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAGGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG......................................................................................................................................TTCAAACTTTTGTAAAGGTTCGATCAGCTGCCGGTTTGGACAGAAGGGAAT-CCATATCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286384" ref_strand="+" ref_description="SGN-E286384 [cLES-11-L5]">
      <seq>tggatgcttgttaaacttggaggtgcttttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactggttattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttgggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggtgactggtggtagaaacaggggacgtgttggaatccttaagaatagagagaagcacaagggtagctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43306" stop="44975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43606" g_stop="43635" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="211" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="309" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44420" g_stop="44675" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="566" r_length="257" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E286384" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43606" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTT-GGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTG</genome_strand>
        <mrna_strand>TGGATGCTTGTTAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E565631" ref_strand="+" ref_description="SGN-E565631 [4070]">
      <seq>taaacttggaggtgcttttgctcctaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttttttcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgttacgattccgaagactaatgagagcttccgacttctttatgacactaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43317" stop="48513"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43617" g_stop="43635" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="200" r_length="181" r_score="0.928"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44188" g_stop="44242" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="255" r_length="55" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E565631" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>255</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E565631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43617" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAA</genome_strand>
        <mrna_strand>TAAACTTGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTTTTTCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E406476" ref_strand="+" ref_description="SGN-E406476 [PPI-3-N12]">
      <seq>tggaggtgcttttgctcctaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacatacccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgttacgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactaagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttacctggtggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43430" stop="44918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43623" g_stop="43635" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="195" r_length="182" r_score="0.923"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.600" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="293" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44420" g_stop="44618" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="493" r_length="200" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E406476" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43623" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATA-CCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGA-CTGGTGGTA</genome_strand>
        <mrna_strand>TGGAGGTGCTTTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTAAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACCTGGTGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E253215" ref_strand="+" ref_description="SGN-E253215 [cLEG-26-D8]">
      <seq>tttgctcctaagccttcttctggtcctcataaatcaagggaatgtttgccactgggtattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctagatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggtgactggaggtagaaacaggggacatgttggaatccttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43430" stop="45019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43633" g_stop="43635" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43730" g_stop="43910" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="184" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="282" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44420" g_stop="44719" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="583" r_length="301" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E253215" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43633" e_stop="43635"/>
          <exon e_start="43730" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCT-GATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACT</genome_strand>
        <mrna_strand>TTT..............................................................................................GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGGTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTAGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGAGGTAGAAACAGGGGACATGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E482666" ref_strand="+" ref_description="SGN-E482666 [cSTE-1-O3]">
      <seq>tctggtccacacaaatcaagggaacgtttgccattggttattatcctcaggaacaggttgaaatatgcctttgaccatacccgtgaggtcatttcaatcttgatgccaaccgccaagttatggttgatgggaaagttaggaccagataagacttaccctgctggtttcattggatgttgttacgattccaaagacgaatgagagcttccgacttctttatgacacttaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatctgtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttacctggtggtagaaacagggggcgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43445" stop="44934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43745" g_stop="43910" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.855"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.85"/>
            <acceptor a_prob="0.600" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="272" r_length="99" r_score="0.929"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44420" g_stop="44634" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="488" r_length="216" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E482666" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E482666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43745" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATG-CATTGA-CATA-CCGTGAGGTCATTTCTATCTTGATG-CAA-CGCCAAGTTATGGTTGATGGGAAAATTAGGA-CAGATAAAACATACCCTGCTGGTTTCA-TGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACAC-TAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGA-CTGGTGGTAGAAACAGGGGACGTGT</genome_strand>
        <mrna_strand>TCTGGTCCACACAAATCAAGGGAACGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCCTTTGACCATACCCGTGAGGTCATTTCAATCTTGATGCCAACCGCCAAGTTATGGTTGATGGGAAAGTTAGGACCAGATAAGACTTACCCTGCTGGTTTCATTGG.....................................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCTGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACCTGGTGGTAGAAACAGGGGGCGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287421" ref_strand="+" ref_description="SGN-E287421 [cLES-15-D3]">
      <seq>tattatcctcaggaaccggttgaaatatgcattgacataccgtgaggtcatttctatcttgatgcaacgccaagtaatggttgatgggaaaattaggacagataagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43483" stop="51759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43783" g_stop="43910" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.600" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="226" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44420" g_stop="44550" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="357" r_length="131" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E287421" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43783" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTT</genome_strand>
        <mrna_strand>TATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTAATGGTTGATGGGAAAATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277531" ref_strand="+" ref_description="SGN-E277531 [cLER-6-A11]">
      <seq>attaggacagataagacgtaccctgctggtttcatggttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggtgactggtggtagaaacaggggacgtgttggaatccttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggtaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaataggttcggcaatatttctctttgtttagagggatgccattcttatttttgtgttgcattttgacatctgtgtactcggtactgctttacatacctttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43574" stop="45291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43874" g_stop="43910" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43911" i_stop="44419" i_length="509">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44420" g_stop="44990" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="608" r_length="571" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E277531" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43874" e_stop="43910"/>
          <exon e_start="44420" e_stop="44990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGTAATATTTCTCTTTGTTTAGAGGGATGCCATTCTTATTTTTGTGTTGCATTTTGACATCTGTGTACTCGGTACTGCTTTACATACCTTTTTTATTT</genome_strand>
        <mrna_strand>ATTAGGACAGATAAGACGTACCCTGCTGGTTTCATGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGCAATATTTCTCTTTGTTTAGAGGGATGCCATTCTTATTTTTGTGTTGCATTTTGACATCTGTGTACTCGGTACTGCTTTACATACCTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348781" ref_strand="+" ref_description="SGN-E348781 [cTOF-29-G14]">
      <seq>taagacgtaccctgctggtttcatggacgttgttacgattccaaagacaaatgaagagtttcagacttctttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggtgactggtggtagaaacaggggacgtgttggaatccttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggtaagggtagtaagccatggggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaataggttcggcaatatttctctttgtttagagggatgccattcttattttttgtgttgcattttgacatctgtgtactcggtactgctttacatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43585" stop="45280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43885" g_stop="43910" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.600" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44188" g_stop="44285" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="125" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44420" g_stop="44980" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="688" r_length="563" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E348781" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43885" e_stop="43910"/>
          <exon e_start="44188" e_stop="44285"/>
          <exon e_start="44420" e_stop="44980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTCTTGTTTCTATGTTTGTTGAATCCCTTTACGAATTGGTAATGCTCATATTTTCTTCATATAGACGTTGTTACGATTCCAAAGACAAATG-AGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCAT-GGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGTAATATTTCTCTTTGTTTAGAGGGATGCCATTCTTA-TTTTTGTGTTGCATTTTGACATCTGTGTACTCGGTACTGCTTTACATACC</genome_strand>
        <mrna_strand>TAAGACGTACCCTGCTGGTTTCATGG.....................................................................................................................................................................................................................................................................................ACGTTGTTACGATTCCAAAGACAAATGAAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGCAATATTTCTCTTTGTTTAGAGGGATGCCATTCTTATTTTTTGTGTTGCATTTTGACATCTGTGTACTCGGTACTGCTTTACATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716698" ref_strand="+" ref_description="SGN-E716698 [FB17DB08]">
      <seq>gataaatgagagtttcagacttccttatgacactaagggtcgattccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaatacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggtgactggtggtagaaacaggggacgtgttggaatccttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggtaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatcataggttgaacttgagatgaatttaataggttcggtaatatttctctttgtttagagggatgccattcttatttttgtgttgcattttgacatctgtgtactcggtactgctttacataccttttttattttgtcaggaacaagaaagacagttttgatcaatcagttgccttctatgtgatagtattttatttttattgccacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43907" stop="45366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44207" g_stop="44285" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44420" g_stop="45074" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="734" r_length="655" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E716698" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44207" e_stop="44285"/>
          <exon e_start="44420" e_stop="45074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGATTTTCATATTTTTGAATTTTTGTGTTGACTATAGTGAGTAGATAAATGTAAATTTTTAGCTCATCTGATCCTATTTCCTTTTGATGCTGTGCTGTTGGAGTAGTCACATTGTTTTCTGCTCTTTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGTAATATTTCTCTTTGTTTAGAGGGATGCCATTCTTATTTTTGTGTTGCATTTTGACATCTGTGTACTCGGTACTGCTTTACATACCTTTTTTATTTTGTCAGGAACAAGAAAGACAGTTTTGATCAATCAGTTGCCTTCTATGTGATAGTATTTTATTTTTATTGCCACAGAGTTTAATG</genome_strand>
        <mrna_strand>GATAAATGAGAGTTTCAGACTTCCTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG......................................................................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGTAATATTTCTCTTTGTTTAGAGGGATGCCATTCTTATTTTTGTGTTGCATTTTGACATCTGTGTACTCGGTACTGCTTTACATACCTTTTTTATTTTGTCAGGAACAAGAAAGACAGTTTTGATCAATCAGTTGCCTTCTATGTGATAGTATTTTATTTTTATTGCCACAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E691434" ref_strand="+" ref_description="SGN-E691434 [LH_Ea06B16]">
      <seq>tcattttaagggccgaattnggnangagggncaagaacaaactcccttagggtcgatcagtgcagtttggacagaagggaatcccatatctcaatacttatgatggaagaacaatcccctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggtgactggtggtagaaacaggggacgtgttggaatccttaagaacagagagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatcataggttaaacttgagatgagcttaataggttgagcaatatttctctttgtttaaaggggatgccattcttatttttgtgttgcattttgacatctgtgtactcggtactgctttacatacctttttttttgtcaagaaaaaagaaagactcaattttgatcaatcagttgccttcttctatgtgatagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="44133" stop="49278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44420" g_stop="45046" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="667" r_length="632" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E691434" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E691434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44420" e_stop="45046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGTAATATTTCTCTTTGTTTAGA-GGGATGCCATTCTTATTTTTGTGTTGCATTTTGACATCTGTGTACTCGGTACTGCTTTACATACCTTTTTTATTTTGTCAGGAACAAGAAAGA--CAGTTTTGATCAATCAGTTG-C--CTTCTATGTGATAGTAT</genome_strand>
        <mrna_strand>AACAAACTCCCTTAGGGTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCCCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAACAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTAAACTTGAGATGAGCTTAATAGGTTGAGCAATATTTCTCTTTGTTTAAAGGGGATGCCATTCTTATTTTTGTGTTGCATTTTGACATCTGTGTACTCGGTACTGCTTTACATACCTTTTTT-TTTGTCAAGAAAAAAGAAAGACTCAATTTTGATCAATCAGTTGCCTTCTTCTATGTGATAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357323" ref_strand="+" ref_description="SGN-E357323 [cTOS-23-G8]">
      <seq>tttttttggaaggcaactgattgatcaaaactgtctttcttgttcctgacaaaaaaaaaaggtatgtaaagcagtaccgagtacacagatgtcaaaatgcaacacaaaaataagaatggcatccctctaaacaaagagaaatattgccgaacctattaaattcatctcaagttcaacctatcatttttaagcagttgtagctgattgagcagccatcctcttgcgagcctcttcaatgatagataacttgataccctttacccttaggtagagacacccatgggcttactacccttaccaagagtgaacacattgccccagacgagtagcaaactcgtgcccccaggagtcctgaatgtgaactgtctcaaagctacccttgtgcttctctctattcttaaggattccacacgtcccctgtttctaccaccagtcaccatgaccacattaccaacatcaaatttgatgaaagtcacaatcttattggaatctaagtccagcttgatggtgtcattggccttgatgaggggatcaggntagcggattgtcttccatcatacgtgttgagatatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="45335" stop="44167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45041" g_stop="44467" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E357323" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45041" e_stop="44467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACATAGAAGGCAACTGATTGATCAAAACTGTCTTTCTTGTTCCTGACAAAATAAAAAAGGTATGTAAAGCAGTACCGAGTACACAGATGTCAAAATGCAACACAAAAATAAGAATGGCATCCCTCTAAACAAAGAGAAATATTACCGAACCTATTAAATTCATCTCAAGTTCAACCTATGATTTTTAAGCAGTTGTAGCTGATTGAGCAGCCATCCTCTTGCGAGCCTCTTCAATGATAGATAACTTGATA-CCTTTACCCTTAGGTAGAGACACCCAT-GGCTTACTACCCTTACCAAGAGTGAACACATTG-CCCAGACGAGTAGCAAACTCGTGCCCCAGGGAGTCCTGAATGTGAACTGTCTCAAAGCTACCCTTGTGCTTCTCTCTATTCTTAAGGATTCCAACACGTCCCCTGTTTCTACCACCAGTCACCATGACCACATTACCAACATCAAATTTGATG-AAGTCAACAATCTTATTGGAATCTAAGTCCAGCTTGATGGTGTCATTGGCCTTGATGAGGGGATCAGGGTAGCGGATTGTTCTTCCATCATAAGTATTGAGATATGGG</genome_strand>
        <mrna_strand>TTTTTTTGGAAGGCAACTGATTGATCAAAACTGTCTTTCTTGTTCCTGACAAAA-AAAAAAGGTATGTAAAGCAGTACCGAGTACACAGATGTCAAAATGCAACACAAAAATAAGAATGGCATCCCTCTAAACAAAGAGAAATATTGCCGAACCTATTAAATTCATCTCAAGTTCAACCTATCATTTTTAAGCAGTTGTAGCTGATTGAGCAGCCATCCTCTTGCGAGCCTCTTCAATGATAGATAACTTGATACCCTTTACCCTTAGGTAGAGACACCCATGGGCTTACTACCCTTACCAAGAGTGAACACATTGCCCCAGACGAGTAGCAAACTCGTGCCCCCAGGAGTCCTGAATGTGAACTGTCTCAAAGCTACCCTTGTGCTTCTCTCTATTCTTAAGGATTCC-ACACGTCCCCTGTTTCTACCACCAGTCACCATGACCACATTACCAACATCAAATTTGATGAAAGTC-ACAATCTTATTGGAATCTAAGTCCAGCTTGATGGTGTCATTGGCCTTGATGAGGGGATCAGGNTAGCGGATTG-TCTTCCATCATACGTGTTGAGATATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357281" ref_strand="+" ref_description="SGN-E357281 [cTOS-23-G17]">
      <seq>tttttttggaaggcaactgattgatcaaaactgtctttcttgttcctgacaaaaaaaaaaggtatgtaaagcagtaccgagtacacagatgtcaaaatgcaacacaaaaataagaatggcatccctctaaacaaagagaaatattgccgaacctattaaattcatctcaagttcaacctatcatttttaagcagttgtagctgattgagcagccatcctcttgcgagcctcttcaatgatagataacttgatacctttacccttaggtagagacacccatggcttactacccttaccaagagtgaacacattgcccagacgagtagcaaactcgtgccccagggagtcctgaatgtgaactgtctcaaagctacccttgtgcttctctctattcttaaggattccaacacgtcccctgtttctaccaccagtcaccatgaccacattaccaacatcaaatttgatgaagtcaacaatcttattggaatctaagtccagcttgatggtgtcattggccttgatgaggggatcagggtagcggattgttcttccatcatacgtgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="45335" stop="44175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45041" g_stop="44475" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E357281" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45041" e_stop="44475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACATAGAAGGCAACTGATTGATCAAAACTGTCTTTCTTGTTCCTGACAAAATAAAAAAGGTATGTAAAGCAGTACCGAGTACACAGATGTCAAAATGCAACACAAAAATAAGAATGGCATCCCTCTAAACAAAGAGAAATATTACCGAACCTATTAAATTCATCTCAAGTTCAACCTATGATTTTTAAGCAGTTGTAGCTGATTGAGCAGCCATCCTCTTGCGAGCCTCTTCAATGATAGATAACTTGATACCTTTACCCTTAGGTAGAGACACCCATGGCTTACTACCCTTACCAAGAGTGAACACATTGCCCAGACGAGTAGCAAACTCGTGCCCCAGGGAGTCCTGAATGTGAACTGTCTCAAAGCTACCCTTGTGCTTCTCTCTATTCTTAAGGATTCCAACACGTCCCCTGTTTCTACCACCAGTCACCATGACCACATTACCAACATCAAATTTGATGAAGTCAACAATCTTATTGGAATCTAAGTCCAGCTTGATGGTGTCATTGGCCTTGATGAGGGGATCAGGGTAGCGGATTGTTCTTCCATCATAAGTATTGA</genome_strand>
        <mrna_strand>TTTTTTTGGAAGGCAACTGATTGATCAAAACTGTCTTTCTTGTTCCTGACAAAA-AAAAAAGGTATGTAAAGCAGTACCGAGTACACAGATGTCAAAATGCAACACAAAAATAAGAATGGCATCCCTCTAAACAAAGAGAAATATTGCCGAACCTATTAAATTCATCTCAAGTTCAACCTATCATTTTTAAGCAGTTGTAGCTGATTGAGCAGCCATCCTCTTGCGAGCCTCTTCAATGATAGATAACTTGATACCTTTACCCTTAGGTAGAGACACCCATGGCTTACTACCCTTACCAAGAGTGAACACATTGCCCAGACGAGTAGCAAACTCGTGCCCCAGGGAGTCCTGAATGTGAACTGTCTCAAAGCTACCCTTGTGCTTCTCTCTATTCTTAAGGATTCCAACACGTCCCCTGTTTCTACCACCAGTCACCATGACCACATTACCAACATCAAATTTGATGAAGTCAACAATCTTATTGGAATCTAAGTCCAGCTTGATGGTGTCATTGGCCTTGATGAGGGGATCAGGGTAGCGGATTGTTCTTCCATCATACGTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E215401" ref_strand="+" ref_description="SGN-E215401 [cLEL-20-G21](-)">
      <seq>gattgttgacttcatcaaatttgatgttggtaatgtggtcatggtgactggtggtagaaacaggggacgtgttggaatccttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggtaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaataggttcggcaatatttctctttgtttagagggatgccattcttatttttgtgttgcattttgacatctgtgtactcggtactgctttacataccttttttttttgtcaggaacaagaaagacagttttgatcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="44263" stop="45321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44563" g_stop="45020" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="458" polyA_stop="476"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E215401" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44563" e_stop="45020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGTAATATTTCTCTTTGTTTAGAGGGATGCCATTCTTATTTTTGTGTTGCATTTTGACATCTGTGTACTCGGTACTGCTTTACATACCTTTTTTATTTTGTCAGGAACAAGAAAGACAGTTTTGATCA</genome_strand>
        <mrna_strand>GATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGCAATATTTCTCTTTGTTTAGAGGGATGCCATTCTTATTTTTGTGTTGCATTTTGACATCTGTGTACTCGGTACTGCTTTACATACCTTTTTT-TTTTGTCAGGAACAAGAAAGACAGTTTTGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E215305" ref_strand="+" ref_description="SGN-E215305 [cLEL-20-G21](-)">
      <seq>atttgatgttggtaatgtggtcatggtgactggtggtagaaacaggggacgtgttggaatccttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggtaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaataggttcggcaatatttctctttgtttagagggatgccattcttatttttgtgttgcattttgacatctgtgtactcggtactgctttacataccttttttttttgtcaggaacaagaaagacagttttgatcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="44281" stop="45321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44581" g_stop="45020" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="440" polyA_stop="458"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E215305" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44581" e_stop="45020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGTAATATTTCTCTTTGTTTAGAGGGATGCCATTCTTATTTTTGTGTTGCATTTTGACATCTGTGTACTCGGTACTGCTTTACATACCTTTTTTATTTTGTCAGGAACAAGAAAGACAGTTTTGATCA</genome_strand>
        <mrna_strand>ATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGCAATATTTCTCTTTGTTTAGAGGGATGCCATTCTTATTTTTGTGTTGCATTTTGACATCTGTGTACTCGGTACTGCTTTACATACCTTTTTT-TTTTGTCAGGAACAAGAAAGACAGTTTTGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E215372" ref_strand="+" ref_description="SGN-E215372 [cLEL-20-C10](-)">
      <seq>tactcgtttgggcaatgtgttcactcttggtaagggtagtaagccatgggtgtctctacctaagggtgaaggtatcaagttatctatcattgaaaaggctcgcaagaggagtggctgctcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaataggttcggcaatatttctctttgtttagagggaggccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="44416" stop="45225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44716" g_stop="44925" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E215372" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>210</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44716" e_stop="44925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGA-TGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGTAATATTTCTCTTTGTTTAGAGGGATGCCAT</genome_strand>
        <mrna_strand>TACTCGTTTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTGAAGGTATCAAGTTATCTATCATTGAAAAGGCTCGCAAGAGGAGTGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGCAATATTTCTCTTTGTTTAGAGGGAGGCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E263941" ref_strand="+" ref_description="SGN-E263941 [cLEG-64-C10]">
      <seq>tatcttcgactcgttagggtttaagacaaacacatctcgccggtagccatcacccgcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacggacaagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaaaggccgggtccgtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="46311" stop="48529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46611" g_stop="46699" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46700" i_stop="47537" i_length="838">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47538" g_stop="47615" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="167" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47616" i_stop="47709" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47710" g_stop="47890" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="348" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47891" i_stop="48158" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48159" g_stop="48229" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="419" r_length="71" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E263941" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46611" e_stop="46699"/>
          <exon e_start="47538" e_stop="47615"/>
          <exon e_start="47710" e_stop="47890"/>
          <exon e_start="48159" e_stop="48229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTTCGACTCGTTAGGGTTTAAGACAAACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTC</genome_strand>
        <mrna_strand>TATCTTCGACTCGTTAGGGTTTAAGACAAACACATCTCGCCGGTAGCCATCACCCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAAGGCCGGGTCCGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E697698" ref_strand="+" ref_description="SGN-E697698 [FA03DD12]">
      <seq>cgcaaacacatctcgccggtagccatcactcgcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacggacaagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattccaaactccctggggcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="46337" stop="48934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46635" g_stop="46699" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46700" i_stop="47537" i_length="838">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47538" g_stop="47615" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="143" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47616" i_stop="47709" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47710" g_stop="47890" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="324" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47891" i_stop="48158" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48159" g_stop="48256" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="422" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48257" i_stop="48345" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48346" g_stop="48634" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="711" r_length="289" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E697698" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46635" e_stop="46699"/>
          <exon e_start="47538" e_stop="47615"/>
          <exon e_start="47710" e_stop="47890"/>
          <exon e_start="48159" e_stop="48256"/>
          <exon e_start="48346" e_stop="48634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATG</genome_strand>
        <mrna_strand>CGCAAACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCCAAACTCCCTGGGGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739843" ref_strand="+" ref_description="SGN-E739843 [LC19AD06]">
      <seq>ccatacatctcgccggtagccatcactcgcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacggacaagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaagactccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaaggggaaaggtatcaagttatctatcattgaagaggctcgcaagaagatggctgcccaatcagctacaactgctttaaaatcttagtttgaacttgagatgagattaataggttgggccatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="46340" stop="49127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46638" g_stop="46699" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46700" i_stop="47537" i_length="838">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47538" g_stop="47615" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="140" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47616" i_stop="47709" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47710" g_stop="47890" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="321" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47891" i_stop="48158" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48159" g_stop="48256" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="419" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48257" i_stop="48345" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48346" g_stop="48827" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="901" r_length="482" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E739843" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>901</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46638" e_stop="46699"/>
          <exon e_start="47538" e_stop="47615"/>
          <exon e_start="47710" e_stop="47890"/>
          <exon e_start="48159" e_stop="48256"/>
          <exon e_start="48346" e_stop="48827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATT</genome_strand>
        <mrna_strand>CCATACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAAGATGGCTGCCCAATCAGCTACAACTGCTTTAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E269264" ref_strand="+" ref_description="SGN-E269264 [cLEM-18-E2]">
      <seq>acacatctcgccggtagccatcacccgcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacggacaagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggttatggttactggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="46340" stop="48840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46640" g_stop="46699" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46700" i_stop="47537" i_length="838">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47538" g_stop="47615" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="138" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47616" i_stop="47709" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47710" g_stop="47890" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="319" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47891" i_stop="48158" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48159" g_stop="48256" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="417" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48257" i_stop="48345" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48346" g_stop="48540" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="612" r_length="195" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E269264" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46640" e_stop="46699"/>
          <exon e_start="47538" e_stop="47615"/>
          <exon e_start="47710" e_stop="47890"/>
          <exon e_start="48159" e_stop="48256"/>
          <exon e_start="48346" e_stop="48540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGT</genome_strand>
        <mrna_strand>ACACATCTCGCCGGTAGCCATCACCCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E212229" ref_strand="+" ref_description="SGN-E212229 [cLEC-75-E8]">
      <seq>tctcgccggtagccatcacccgcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacggacaagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaagactccctgnggcatgagtttgctaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="46345" stop="48946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46645" g_stop="46699" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46700" i_stop="47537" i_length="838">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47538" g_stop="47615" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="133" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47616" i_stop="47709" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47710" g_stop="47890" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="314" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47891" i_stop="48158" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48159" g_stop="48256" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="412" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48257" i_stop="48345" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48346" g_stop="48646" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="713" r_length="301" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E212229" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46645" e_stop="46699"/>
          <exon e_start="47538" e_stop="47615"/>
          <exon e_start="47710" e_stop="47890"/>
          <exon e_start="48159" e_stop="48256"/>
          <exon e_start="48346" e_stop="48646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCC</genome_strand>
        <mrna_strand>TCTCGCCGGTAGCCATCACCCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGNGGCATGAGTTTGCTACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266999" ref_strand="+" ref_description="SGN-E266999 [cLEI-7-L6]">
      <seq>cgccggtagccatcacccgcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacggacaagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="46348" stop="48776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46648" g_stop="46699" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46700" i_stop="47537" i_length="838">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47538" g_stop="47615" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="130" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47616" i_stop="47709" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47710" g_stop="47890" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="311" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47891" i_stop="48158" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48159" g_stop="48256" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="409" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48257" i_stop="48345" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48346" g_stop="48476" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="540" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E266999" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46648" e_stop="46699"/>
          <exon e_start="47538" e_stop="47615"/>
          <exon e_start="47710" e_stop="47890"/>
          <exon e_start="48159" e_stop="48256"/>
          <exon e_start="48346" e_stop="48476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTT</genome_strand>
        <mrna_strand>CGCCGGTAGCCATCACCCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E304099" ref_strand="+" ref_description="SGN-E304099 [cLEX-6-N5]">
      <seq>cgccggtagccatcacccgcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagactggacggacaacacttaccctgctggtttcatggatgttgttactattccaaagacaaatgacagtttccgacttctttatgacactaagggccgggtccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagcttggacagaaggggatcccatatctcaacacttatgatggaagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="46348" stop="48722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46648" g_stop="46699" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46700" i_stop="47537" i_length="838">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47538" g_stop="47615" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="130" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47616" i_stop="47709" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47710" g_stop="47890" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="311" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47891" i_stop="48158" i_length="268">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48159" g_stop="48256" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="409" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48257" i_stop="48345" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48346" g_stop="48422" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="486" r_length="77" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E304099" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46648" e_stop="46699"/>
          <exon e_start="47538" e_stop="47615"/>
          <exon e_start="47710" e_stop="47890"/>
          <exon e_start="48159" e_stop="48256"/>
          <exon e_start="48346" e_stop="48422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAAC</genome_strand>
        <mrna_strand>CGCCGGTAGCCATCACCCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGACTGGACGGACAACACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGACAGTTTCCGACTTCTTTATGACACTAAGGGCCGGGTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGCTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E440190" ref_strand="+" ref_description="SGN-E440190 [cSTA-15-H22]">
      <seq>cgccggtagccgtcactcgtggcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="46348" stop="54993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46648" g_stop="46699" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46700" i_stop="47537" i_length="838">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47538" g_stop="47615" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="130" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47616" i_stop="47709" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47710" g_stop="47890" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="311" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47891" i_stop="48158" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48159" g_stop="48210" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="363" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E440190" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E440190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46648" e_stop="46699"/>
          <exon e_start="47538" e_stop="47615"/>
          <exon e_start="47710" e_stop="47890"/>
          <exon e_start="48159" e_stop="48210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACAC</genome_strand>
        <mrna_strand>CGCCGGTAGCCGTCACTCGTGGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345340" ref_strand="+" ref_description="SGN-E345340 [cTOF-13-E19]">
      <seq>gccggtagccatcacccgcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacggacaagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaagactccctgnggcatgagtttgctacccgtttgggaaatgtgttcactcttggcaagggtagtaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="46349" stop="48984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46649" g_stop="46699" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46700" i_stop="47537" i_length="838">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47538" g_stop="47615" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="129" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47616" i_stop="47709" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47710" g_stop="47890" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="310" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47891" i_stop="48158" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48159" g_stop="48256" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="408" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48257" i_stop="48345" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48346" g_stop="48684" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="747" r_length="339" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E345340" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46649" e_stop="46699"/>
          <exon e_start="47538" e_stop="47615"/>
          <exon e_start="47710" e_stop="47890"/>
          <exon e_start="48159" e_stop="48256"/>
          <exon e_start="48346" e_stop="48684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAG</genome_strand>
        <mrna_strand>GCCGGTAGCCATCACCCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGNGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E328709" ref_strand="+" ref_description="SGN-E328709 [cTOC-23-I12]">
      <seq>ccggtagccatcacccgcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacggacaagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaagactccctgnggcatgagtttgctacccgtttgggaaatgtgttcactcttgggcagggtagtaagccatgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="46350" stop="48992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46650" g_stop="46699" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46700" i_stop="47537" i_length="838">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47538" g_stop="47615" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="128" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47616" i_stop="47709" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47710" g_stop="47890" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="309" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47891" i_stop="48158" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48159" g_stop="48256" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="407" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48257" i_stop="48345" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48346" g_stop="48692" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="754" r_length="347" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E328709" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46650" e_stop="46699"/>
          <exon e_start="47538" e_stop="47615"/>
          <exon e_start="47710" e_stop="47890"/>
          <exon e_start="48159" e_stop="48256"/>
          <exon e_start="48346" e_stop="48692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGT</genome_strand>
        <mrna_strand>CCGGTAGCCATCACCCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGNGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGGCAGGGTAGTAAGCCATGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E461088" ref_strand="+" ref_description="SGN-E461088 [cPRO-34-C4]">
      <seq>ggtagccgtcactcgcggcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatctgtgcagtttggacagaaggggatcccatatctcaacacttacgatggaagaacaatccgctaccccgatccccttatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaacagagagaagcacaagggtagctttgagacagttcacattcaggattccctgnggcatgagtttgctacccgttttgggaaatgtgttcactctttggtaaaggtagtaagccatgggtgtctctacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="46352" stop="49001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46652" g_stop="46699" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46700" i_stop="47537" i_length="838">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47538" g_stop="47615" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="126" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47616" i_stop="47709" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47710" g_stop="47890" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="307" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47891" i_stop="48158" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48159" g_stop="48256" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="405" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48257" i_stop="48345" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48346" g_stop="48701" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="763" r_length="358" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E461088" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E461088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46652" e_stop="46699"/>
          <exon e_start="47538" e_stop="47615"/>
          <exon e_start="47710" e_stop="47890"/>
          <exon e_start="48159" e_stop="48256"/>
          <exon e_start="48346" e_stop="48701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCG-TTTGGGAAATGTGTTCACTC-TTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACC</genome_strand>
        <mrna_strand>GGTAGCCGTCACTCGCGGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCTGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTACGATGGAAGAACAATCCGCTACCCCGATCCCCTTATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAACAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGNGGCATGAGTTTGCTACCCGTTTTGGGAAATGTGTTCACTCTTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266890" ref_strand="+" ref_description="SGN-E266890 [cLEI-7-G7]">
      <seq>gtagccatcacccgcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaagaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttatgacggacaaaacttaccctgctggtttcatggatgttgctactattccaaagacaaatgagagtttccgacttctttatgacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="46353" stop="54993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46653" g_stop="46699" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46700" i_stop="47537" i_length="838">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47538" g_stop="47615" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="125" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47616" i_stop="47709" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47710" g_stop="47890" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="306" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47891" i_stop="48158" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48159" g_stop="48210" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="358" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E266890" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46653" e_stop="46699"/>
          <exon e_start="47538" e_stop="47615"/>
          <exon e_start="47710" e_stop="47890"/>
          <exon e_start="48159" e_stop="48210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACAC</genome_strand>
        <mrna_strand>GTAGCCATCACCCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAAGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTATGACGGACAAAACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGCTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371059" ref_strand="+" ref_description="SGN-E371059 [TUS-29-H9]">
      <seq>tagccatcacccgcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacggacaagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggttatggttactggtggtagaaacaggggacgtgttggatttcttaagaatagagagaagcacaagggtagctatgagacagttcacattcaagactccctggggcatgagtttgctacccgtttgggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="46354" stop="48955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46654" g_stop="46699" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46700" i_stop="47537" i_length="838">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47538" g_stop="47615" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="124" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47616" i_stop="47709" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47710" g_stop="47890" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="305" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47891" i_stop="48158" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48159" g_stop="48256" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="403" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48257" i_stop="48345" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48346" g_stop="48655" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="713" r_length="310" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E371059" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46654" e_stop="46699"/>
          <exon e_start="47538" e_stop="47615"/>
          <exon e_start="47710" e_stop="47890"/>
          <exon e_start="48159" e_stop="48256"/>
          <exon e_start="48346" e_stop="48655"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAA</genome_strand>
        <mrna_strand>TAGCCATCACCCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGATTTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTATGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266017" ref_strand="+" ref_description="SGN-E266017 [cLEI-6-H22]">
      <seq>tagccatcacccgcgggggctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacggacaagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaagggatcccatatctcaacactaatgatggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="46354" stop="48719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46654" g_stop="46699" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46700" i_stop="47537" i_length="838">
            <donor d_prob="0.998" d_score="0.93"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47538" g_stop="47615" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="124" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47616" i_stop="47709" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47710" g_stop="47890" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="305" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47891" i_stop="48158" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48159" g_stop="48256" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="403" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48257" i_stop="48345" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48346" g_stop="48419" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="477" r_length="74" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E266017" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46654" e_stop="46699"/>
          <exon e_start="47538" e_stop="47615"/>
          <exon e_start="47710" e_stop="47890"/>
          <exon e_start="48159" e_stop="48256"/>
          <exon e_start="48346" e_stop="48419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAG</genome_strand>
        <mrna_strand>TAGCCATCACCCGCGGGGGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAAGGGATCCCATATCTCAACACTAATGATGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E269806" ref_strand="+" ref_description="SGN-E269806 [cLEM-17-M19]">
      <seq>tagccatcacccgcggcagctaatctggcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagcctttttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacggacaagacttaccctgctggtttcatggatgttgttactattccaaacacaaatgagagtttccgacttctttatgacactaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="46354" stop="54998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46654" g_stop="46699" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46700" i_stop="47537" i_length="838">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47538" g_stop="47615" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="124" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47616" i_stop="47709" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47710" g_stop="47890" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="305" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47891" i_stop="48158" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48159" g_stop="48215" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="362" r_length="57" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E269806" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46654" e_stop="46699"/>
          <exon e_start="47538" e_stop="47615"/>
          <exon e_start="47710" e_stop="47890"/>
          <exon e_start="48159" e_stop="48215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGG</genome_strand>
        <mrna_strand>TAGCCATCACCCGCGGCAGCTAATCTGGCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTTTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAACACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E444030" ref_strand="+" ref_description="SGN-E444030 [cSTA-41-I17]">
      <seq>tagccgtcactcgtggcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="46354" stop="54993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46654" g_stop="46699" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46700" i_stop="47537" i_length="838">
            <donor d_prob="0.998" d_score="0.93"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47538" g_stop="47615" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="124" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47616" i_stop="47709" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47710" g_stop="47890" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="305" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47891" i_stop="48158" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48159" g_stop="48210" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="357" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E444030" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46654" e_stop="46699"/>
          <exon e_start="47538" e_stop="47615"/>
          <exon e_start="47710" e_stop="47890"/>
          <exon e_start="48159" e_stop="48210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACAC</genome_strand>
        <mrna_strand>TAGCCGTCACTCGTGGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280432" ref_strand="+" ref_description="SGN-E280432 [cLER-1-H2]">
      <seq>tagccatcacccgcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgggaggtcatttctatcttgatgcaacgcccagttatggttgatgggaaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="46354" stop="48156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46654" g_stop="46699" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46700" i_stop="47537" i_length="838">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47538" g_stop="47615" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="124" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47616" i_stop="47709" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47710" g_stop="47856" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="271" r_length="147" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E280432" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>271</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46654" e_stop="46699"/>
          <exon e_start="47538" e_stop="47615"/>
          <exon e_start="47710" e_stop="47856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTT</genome_strand>
        <mrna_strand>TAGCCATCACCCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGGGAGGTCATTTCTATCTTGATGCAACGCCCAGTTATGGTTGATGGGAAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E273259" ref_strand="+" ref_description="SGN-E273259 [cLEM-24-H1]">
      <seq>agccatcacccgcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacggacaagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="46355" stop="48824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46655" g_stop="46699" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46700" i_stop="47537" i_length="838">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47538" g_stop="47615" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="123" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47616" i_stop="47709" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47710" g_stop="47890" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="304" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47891" i_stop="48158" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48159" g_stop="48256" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="402" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48257" i_stop="48345" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48346" g_stop="48524" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="581" r_length="179" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E273259" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46655" e_stop="46699"/>
          <exon e_start="47538" e_stop="47615"/>
          <exon e_start="47710" e_stop="47890"/>
          <exon e_start="48159" e_stop="48256"/>
          <exon e_start="48346" e_stop="48524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGT</genome_strand>
        <mrna_strand>AGCCATCACCCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E269490" ref_strand="+" ref_description="SGN-E269490 [cLEM-2-N13]">
      <seq>catcacccgcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacggacaagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="46358" stop="48774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46658" g_stop="46699" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46700" i_stop="47537" i_length="838">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47538" g_stop="47615" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="120" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47616" i_stop="47709" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47710" g_stop="47890" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="301" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47891" i_stop="48158" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48159" g_stop="48256" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="399" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48257" i_stop="48345" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48346" g_stop="48474" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="528" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E269490" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46658" e_stop="46699"/>
          <exon e_start="47538" e_stop="47615"/>
          <exon e_start="47710" e_stop="47890"/>
          <exon e_start="48159" e_stop="48256"/>
          <exon e_start="48346" e_stop="48474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGAC</genome_strand>
        <mrna_strand>CATCACCCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453203" ref_strand="+" ref_description="SGN-E453203 [cSTS-19-O19]">
      <seq>gtcactcgcggcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatctgtgcagtttggacagaaggggatcccatatctcaacacttacgatggaagaacaatccgctaccccgatccccttatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggtcatggttactggtggtagaaacaggggggcgtgttggaattcttaagaacagagagaagcacaagggtagctttgagaacagtcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="46360" stop="48962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46659" g_stop="46699" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46700" i_stop="47537" i_length="838">
            <donor d_prob="0.998" d_score="0.95"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47538" g_stop="47615" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="119" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47616" i_stop="47709" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47710" g_stop="47890" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="300" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47891" i_stop="48158" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48159" g_stop="48256" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="398" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48257" i_stop="48345" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48346" g_stop="48662" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="716" r_length="318" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E453203" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46659" e_stop="46699"/>
          <exon e_start="47538" e_stop="47615"/>
          <exon e_start="47710" e_stop="47890"/>
          <exon e_start="48159" e_stop="48256"/>
          <exon e_start="48346" e_stop="48662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACA-GGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTT</genome_strand>
        <mrna_strand>GTCACTCGCGGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCTGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTACGATGGAAGAACAATCCGCTACCCCGATCCCCTTATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGGCGTGTTGGAATTCTTAAGAACAGAGAGAAGCACAAGGGTAGCTTTGAGAACAGTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341583" ref_strand="+" ref_description="SGN-E341583 [cTOE-23-J10]">
      <seq>atcacccgcggcttctaatctgtcggaaaaccgccaaaatggcgagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacggacaagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggttatggttactggtggtagaaacaggggacgtgttggaattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="46359" stop="48869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46659" g_stop="46699" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46700" i_stop="47537" i_length="838">
            <donor d_prob="0.998" d_score="0.93"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47538" g_stop="47615" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="119" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47616" i_stop="47709" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47710" g_stop="47890" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="300" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47891" i_stop="48158" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48159" g_stop="48256" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="398" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48257" i_stop="48345" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48346" g_stop="48569" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="622" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E341583" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46659" e_stop="46699"/>
          <exon e_start="47538" e_stop="47615"/>
          <exon e_start="47710" e_stop="47890"/>
          <exon e_start="48159" e_stop="48256"/>
          <exon e_start="48346" e_stop="48569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCT</genome_strand>
        <mrna_strand>ATCACCCGCGGCTTCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201593" ref_strand="+" ref_description="SGN-E201593 [cLEC-11-M9]">
      <seq>ggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacggacaagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="46368" stop="48825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46668" g_stop="46699" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46700" i_stop="47537" i_length="838">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47538" g_stop="47615" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="110" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47616" i_stop="47709" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47710" g_stop="47890" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="291" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47891" i_stop="48158" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48159" g_stop="48256" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="389" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48257" i_stop="48345" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48346" g_stop="48525" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="569" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E201593" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46668" e_stop="46699"/>
          <exon e_start="47538" e_stop="47615"/>
          <exon e_start="47710" e_stop="47890"/>
          <exon e_start="48159" e_stop="48256"/>
          <exon e_start="48346" e_stop="48525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTG</genome_strand>
        <mrna_strand>GGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337692" ref_strand="+" ref_description="SGN-E337692 [cTOE-17-P17]">
      <seq>ggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacggacaagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaacggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42483" stop="48761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46683" g_stop="46699" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46700" i_stop="47537" i_length="838">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47538" g_stop="47615" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="95" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47616" i_stop="47709" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47710" g_stop="47890" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="276" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47891" i_stop="48158" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48159" g_stop="48256" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="374" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48257" i_stop="48345" i_length="89">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48346" g_stop="48461" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="490" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E337692" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46683" e_stop="46699"/>
          <exon e_start="47538" e_stop="47615"/>
          <exon e_start="47710" e_stop="47890"/>
          <exon e_start="48159" e_stop="48256"/>
          <exon e_start="48346" e_stop="48461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAACCGCCAAAATGGTTAGTTTTCTCCCTCTGTTAATTCATCTCGTCAATTTTGTTTAGGTTATTGTTTGTTTGCCGAATAGATCAGTTGTATTTTTAGTTTTCATGGCTTTTGTTCCAGGTCTAGACTGTACTGTATCAGCTATAGCTTTGCTAATTGTTTGCGATTTGAGTAATGCATCTACGATTATATTCTTGGTTGTTCCTTTTCGATTTATGCGATCAAATGTATGTGTTGATCCTGATTAATTTTAGGGCTCGTATGTGGAAATAATCGATTGCATTAGTTACTATCGCCACTGGATGTTAGTGTATACAGTTTTTTAATAAATTGTATTTTGCTTTTATTGTGATTGCTGTTGCACTCTGTGTTTTGGTGTATGCTACTTGATTATTTTAATGAATACAACATTTGATAGATTTTATGATTCTACAGATAAACATACTTTAAGAAGTTGTTTTAATACAAAATAATGTTTCTAAATAATTAGTAAAAACATAGTGAGAAAATAAATTAATCAGACCAAAGTGGTCACACACACAAACACAAAGTGAGACCGAAACCTAACGGTTGATCTAATGATAGCATAATATTTGGACAAGGAAATTGTGTAGTATAATTCAAGTGGCCTATGCACTAAATTTTTTTTTCTTTACCTTTGTTAAAGAACATGCTTTTAGCTTTGTTTGACATAGATAGACCTTAAAAAGCTGTGGAATAGCACCCCTTTTTATTTTTGATAAATTGATTTTTGTTGTTTCAGCTTACATTTATACAAGTGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACAC</genome_strand>
        <mrna_strand>GGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAACGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324489" ref_strand="+" ref_description="SGN-E324489 [cTOC-9-A17]">
      <seq>tggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaagtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacggacaagacttaccctgctggtttcatggatagttgcactattccaaaaacaaatgagagtttccgacttctttatgacactaaaggccggttccgtctccactcactcagagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43257" stop="48545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47465" g_stop="47466" g_length="2"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2" r_length="2" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47467" i_stop="47537" i_length="71">
            <donor d_prob="0.270" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47538" g_stop="47615" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="80" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47616" i_stop="47709" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47710" g_stop="47890" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="261" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47891" i_stop="48158" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48159" g_stop="48245" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="348" r_length="87" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E324489" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47465" e_stop="47466"/>
          <exon e_start="47538" e_stop="47615"/>
          <exon e_start="47710" e_stop="47890"/>
          <exon e_start="48159" e_stop="48245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTAAGATTTTTGGATTTCGTCTTTGGAAACATCATACTAATGTGAATTTCGTTACTTCTTCCTATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGAT-GTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATG</genome_strand>
        <mrna_strand>TG.......................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAAGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATAGTTG-CACTATTCCAAAAACAAATGAGAGTTTCCGACTTCTTTATGACACTAAAGGCCGGTTCCGTCTCCACTCACTCAGAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242662" ref_strand="+" ref_description="SGN-E242662 [cLED-30-F19]">
      <seq>ttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacggacaagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43267" stop="48878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47547" g_stop="47615" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47616" i_stop="47709" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47710" g_stop="47890" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="250" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47891" i_stop="48158" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48159" g_stop="48256" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="348" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48257" i_stop="48345" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48346" g_stop="48578" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="581" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E242662" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47547" e_stop="47615"/>
          <exon e_start="47710" e_stop="47890"/>
          <exon e_start="48159" e_stop="48256"/>
          <exon e_start="48346" e_stop="48578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAG</genome_strand>
        <mrna_strand>TTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244688" ref_strand="+" ref_description="SGN-E244688 [cLED-38-E22]">
      <seq>ttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgggaggtcatttctatcttgattcaacgccaagttatggttgatgggaaagttatgacggacaagacttaccctgctggtttcatggatgtgtgtactattccaaagacaaatgagagtttccgacttatttatgacactaagggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43267" stop="48673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47547" g_stop="47615" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47616" i_stop="47709" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47710" g_stop="47890" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="250" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47891" i_stop="48158" i_length="268">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.924" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48159" g_stop="48256" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="348" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48257" i_stop="48345" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48346" g_stop="48373" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="376" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E244688" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47547" e_stop="47615"/>
          <exon e_start="47710" e_stop="47890"/>
          <exon e_start="48159" e_stop="48256"/>
          <exon e_start="48346" e_stop="48373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGC</genome_strand>
        <mrna_strand>TTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGGGAGGTCATTTCTATCTTGATTCAACGCCAAGTTATGGTTGATGGGAAAGTTATGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTGTGTACTATTCCAAAGACAAATGAGAGTTTCCGACTTATTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E570760" ref_strand="+" ref_description="SGN-E570760 [15395]">
      <seq>gcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggacaggaagggaatcccatatctcaacacttatgatggaagaacaatccgtaccctgatcccctcatcaagggccaatgacaccatcaagcttgacttagattccaataagattgtttgacttcatcaaatttgatgttggaaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43294" stop="48824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47574" g_stop="47615" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47616" i_stop="47709" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47710" g_stop="47890" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="223" r_length="181" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47891" i_stop="48158" i_length="268">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48159" g_stop="48256" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="321" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48257" i_stop="48345" i_length="89">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48346" g_stop="48524" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="502" r_length="181" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E570760" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47574" e_stop="47615"/>
          <exon e_start="47710" e_stop="47890"/>
          <exon e_start="48159" e_stop="48256"/>
          <exon e_start="48346" e_stop="48524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACA-GAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAA-GGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTG-TTGACTTCATCAAATTTGATGTTGGAAATGT</genome_strand>
        <mrna_strand>GCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCG-TACCCTGATCCCCTCATCAAGGGCCAATGACACCATCAAGCTTGACTTAGATTCCAATAAGATTGTTTGACTTCATCAAATTTGATGTTGGAAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265661" ref_strand="+" ref_description="SGN-E265661 [cLEI-14-F2]">
      <seq>aaacttggaggtgcttttgctcccaagccttcttgtggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgctttgacttaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacggacaagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="47410" stop="48829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47598" g_stop="47615" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47616" i_stop="47709" i_length="94">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47710" g_stop="47890" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="199" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47891" i_stop="48158" i_length="268">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48159" g_stop="48256" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="297" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48257" i_stop="48345" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48346" g_stop="48529" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="481" r_length="184" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E265661" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47598" e_stop="47615"/>
          <exon e_start="47710" e_stop="47890"/>
          <exon e_start="48159" e_stop="48256"/>
          <exon e_start="48346" e_stop="48529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTA</genome_strand>
        <mrna_strand>AAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTGTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371058" ref_strand="+" ref_description="SGN-E371058 [TUS-29-H9](-)">
      <seq>gatgggaaaagtaggacggacaagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaagactccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaaggggaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgcccaatcagctacaactgcttaaaaatcttaggttgaacttgagatgagattaataggttgggccatatttctctttgtttagagggatgccgttcctatttttgtgtgttccatttcaatatttgtgtactcggtactgttttacatacatttttttgtcaggaaaaaagaaagactgagttgagatcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="47545" stop="49248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47845" g_stop="47890" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47891" i_stop="48158" i_length="268">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48159" g_stop="48256" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="144" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48257" i_stop="48345" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48346" g_stop="48955" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="754" r_length="610" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E371058" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47845" e_stop="47890"/>
          <exon e_start="48159" e_stop="48256"/>
          <exon e_start="48346" e_stop="48955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGGGTAAGACACCTCCACTAGATTGTTTTTTCATTTCATAACCTTTAGATTTTTATTCTCCTTATTTCTGTACTGCATGGGTTTGTTATCTTACTGATTCATCTATATACACATGCTTTCACAATTCCGAAGACAATTGTGTATCAGAGTGTCTACAAGTTTTTTCATCAAAAATCATTTTGTCTTGTGTCCTGTTTTCTTCTTTTTTTCTTGTTGCTATGTTTGTTAAATTCCTTGACAAATTGGTAATGCAGTTATTTTCTTTTTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTG</genome_strand>
        <mrna_strand>GATGGGAAAAGTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGGTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCCTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357522" ref_strand="+" ref_description="SGN-E357522 [cTOS-23-D15]">
      <seq>gacttctttatgacactaagggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaagactccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaaggggaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgcccaatcagctacaactgcttaaaaatcttaggttgaacttgagatgagattaataggttgggccatatttctctttgtttagagggatgccgttcctatttttgtgtgttccatttcaatatttgtgtactcggtactgttttacatacatttttttgtcaggaaaaaagaaagactgagttgagatcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="47895" stop="49248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48195" g_stop="48256" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48257" i_stop="48345" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48346" g_stop="48947" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="664" r_length="602" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="665" polyA_stop="674"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E357522" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48195" e_stop="48256"/>
          <exon e_start="48346" e_stop="48947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCA</genome_strand>
        <mrna_strand>GACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGGTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCCTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353185" ref_strand="+" ref_description="SGN-E353185 [cTOS-14-G14]">
      <seq>gacttctttatgacactaagggccggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaagactccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaaggggaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgcccaatcagctacaactgcttaaaaatcttaggttgaacttgagatgagattaataggttgggccatatttctctttgtttagagggatgccgttcctatttttgtgtgttccattttcaatattgtgtactcggtactgttttacatacattttttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="47895" stop="49215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48195" g_stop="48256" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48257" i_stop="48345" i_length="89">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48346" g_stop="48917" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="634" r_length="572" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E353185" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48195" e_stop="48256"/>
          <exon e_start="48346" e_stop="48917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGAATGCTGTGCTATTAAGTAGTGACCTTGTTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCA-TTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGT</genome_strand>
        <mrna_strand>GACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGGTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCCTATTTTTGTGTGTTCCATTTTCAATA-TTGTGTACTCGGTACTGTTTTACATACATTTTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732657" ref_strand="+" ref_description="SGN-E732657 [LB02DB04]">
      <seq>caaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaagactccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaaggggaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgcccaatcagctacaactgcttaaaaatcttagtttgaacttgagatgagattaataggttgggccatatttctctttgtttagagggatgccgttcttatttttgtgtgttccatttcaatatttgtgtactcggtactgttttacatacatttttttgtcaggaaaaaagaaagactgagttgagatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="48048" stop="49248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48348" g_stop="48947" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E732657" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48348" e_stop="48947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCA</genome_strand>
        <mrna_strand>CAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372963" ref_strand="+" ref_description="SGN-E372963 [TUS-32-B3](-)">
      <seq>cagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggttatggttactggtggtagaaacaggggacgtgttggaatttttaagaatagagagaagcacaagggtagctttgagacagttcacattcaagactccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaaggggaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgcccaatcagctacaactgcttaaaaattttaggttgaacttgagatgagattaataggttgggccatatttctctttgtttagagggatgccgttcctatttttgtgtgttccatttcaatatttgtgtactcggtactgttttacatacatttttttgtcaggaaaaaagaaagactgagttgagatcaatcagttgccttttatgttatagtaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="48082" stop="49272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48382" g_stop="48971" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="591" polyA_stop="612"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E372963" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48382" e_stop="48971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTGCCTTCTATGTTATAGT</genome_strand>
        <mrna_strand>CAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTTTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATTTTAGGTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCCTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTGCCTTTTATGTTATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292365" ref_strand="+" ref_description="SGN-E292365 [cLET-1-M8]">
      <seq>agaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaagactccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaaggggaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgcccaatcagctacaactgcttaaaaatcttaggttgaacttgagatgagattaataggttgggccatatttctctttgtttagagggatgccgttcctatttttgtgtgttccatttcaatatttgtgtactcggtactgttttacatacatttttttgtcaggaaaaaagaaagactgagttgagatcaatcagttgccttctatgttatagtnnaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="48083" stop="49271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48383" g_stop="48978" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E292365" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48383" e_stop="48978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTGCCTTCTATGTTATAGTATTTTAT</genome_strand>
        <mrna_strand>AGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGGTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCCTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTGCCTTCTATGTTATAGTNNAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E372964" ref_strand="+" ref_description="SGN-E372964 [TUS-32-B3]">
      <seq>agaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccattaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaagactccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaaggggaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgcccaatcagctacaactgcttaaaaatcttaggttgaacttgagatgagattaataggttgggccatatttctctttgtttagagggatgccgttcctatttttgtgtgttccatttcaatatttgtgtactcggtactgttttacatacatttttttgtcaggaaaaaagaaagactgagttgagatcaatcagttgccttctatgttatagtaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="48083" stop="49272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48383" g_stop="48971" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="590" polyA_stop="612"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E372964" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48383" e_stop="48971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTGCCTTCTATGTTATAGT</genome_strand>
        <mrna_strand>AGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGGTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCCTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTGCCTTCTATGTTATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265906" ref_strand="-" ref_description="SGN-E265906 [cLEI-11-L14]">
      <seq>tccaataagattgttgacttcctcaaatttgatgttggcaatgtggttatggttactggtggtagaaacaggggacgtgttgtcattcttaagaatagagagaagctcaagggtagctttgagacagttcacattcaaaactccctagggcatcagtttgcaacccgtttggataatgtgttcactcttggcaagggtagtaagccatgggtgtcccttcctaaggggaaaggtaccaagttatctatcattgaagaggctcgcaaaaggatggctgcccaaccagctatcaactgcttaaaaatcttaggttgaacttgagatgagattaataggttgggccatatctctatttgtttaaagggatgccgttccgatttttgtgtgttccatttcaaaatttgtgaactcggtaatgttttacatacatttttttgtcaggaaaaaagaacgtttcagttgagatcctaaatcaaaaaagaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="48181" stop="49246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48481" g_stop="48947" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="475" polyA_stop="494"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E265906" ref_strand="-">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265906" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48481" e_stop="48947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTA-CAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCA</genome_strand>
        <mrna_strand>TCCAATAAGATTGTTGACTTCCTCAAATTTGATGTTGGCAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGTCATTCTTAAGAATAGAGAGAAGCTCAAGGGTAGCTTTGAGACAGTTCACATTCAAAACTCCCTAGGGCATCAGTTTGCAACCCGTTTGGATAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCCCTTCCTAAGGGGAAAGGTACCAAGTTATCTATCATTGAAGAGGCTCGCAAAAGGATGGCTGCCCAACCAGCTATCAACTGCTTAAAAATCTTAGGTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATCTCTATTTGTTTAAAGGGATGCCGTTCCGATTTTTGTGTGTTCCATTTCAAAATTTGTGAACTCGGTAATGTTTTACATACATTTTTTTGTCAGGAAAAAAGAACGTTTCAGTTGAGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E609645" ref_strand="+" ref_description="SGN-E609645 [25658]">
      <seq>aaggtccttaaactctgtcgcaataaaatactatcacataaaaggcaactgattgatctcaactcagtctaccttttttcccgacaaaaaaaggtaagtaaatcagtaccgagtacacagatgttgaaatgcaacacacaaaataagaatggcatccctctaaacaaagagaaacatggcccaatctattaaattcatctcaagttcaacctatcatttttaagcagttgtagctgattgagtagccatcctcttgcgagcctcttcaatgatagataacttgatacctttacccttaggtagagacacccatggcttactacctttaccaagagtgaacacattccccaaacgggtagcaaactcatgccccagggaatcctgaatgtgaactgtctcaaagctacccttgtgcttctctctgttcttaagaattccaagacgccccctgtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="49302" stop="48245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49001" g_stop="48545" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E609645" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E609645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49001" e_stop="48545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTGTCCTTAAACTCAGTCGCAATAAAATACTATAACATAGAAGGCAACTGATTGATCTCAACTCAGTCTTTCTTTTTTCCTGACAAAAAAATGTATGTAAAACAGTACCGAGTACACAAATATTGAAATGGAACACACAAAAATAAGAACGGCATCCCTCTAAACAAAGAGAAATATGGCCCAACCTATTAATCTCATCTCAAGTTCAAACTAAGATTTTTAAGCAGTTGTAGCTGATTGGGCAGCCATCCTCTTGCGAGCCTCTTCAATGATAGATAACTTGATACCTTTCCCCTTAGGTAGAGACACCCATGGCTTACTACCCTTGCCAAGAGTGAACACATTTCCCAAACGGGTAGCAAACTCATGCCCCAGGGAGTCTTGAATGTGAACTGTCTCAAAGCTACCCTTGTGCTTCTCTCTATTCTTAAGAATTCCAACACGTCCCCTGTTTC</genome_strand>
        <mrna_strand>AAG-GTCCTTAAACTCTGTCGCAATAAAATACTATCACATAAAAGGCAACTGATTGATCTCAACTCAGTCTACCTTTTTTCCCGACAAAAAAAGGTAAGTAAATCAGTACCGAGTACACAGATGTTGAAATGCAACACAC-AAAATAAGAATGGCATCCCTCTAAACAAAGAGAAACATGGCCCAATCTATTAAATTCATCTCAAGTTCAACCTATCATTTTTAAGCAGTTGTAGCTGATTGAGTAGCCATCCTCTTGCGAGCCTCTTCAATGATAGATAACTTGATACCTTTACCCTTAGGTAGAGACACCCATGGCTTACTACCTTTACCAAGAGTGAACACATTCCCCAAACGGGTAGCAAACTCATGCCCCAGGGAATCCTGAATGTGAACTGTCTCAAAGCTACCCTTGTGCTTCTCTCTGTTCTTAAGAATTCCAAGACGCCCCCTGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E612038" ref_strand="+" ref_description="SGN-E612038 [61796]">
      <seq>tggggcatgagtttgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccgtgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctactcaatcagcgacaactgcttaaaaatgataggttgaacttgagatgaatttaatagattgggccatgtttctctttgtttagagggatgccattcttattttgtgtgttgcatttcaacatctgtgtactcggtactgatttacttgcctttttttgtcgggaaaaaaggtagactgagttgagatcaatcagttgccttttatgtgatagtattttattgcgacagagtttaaggaccttgtccattagtatattcacttatttcaaaatgagttttggttgtaatattttcaaatctaacctggagttggattccaaatttggtatagtgcagtaaacctgattcctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="48326" stop="49413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48626" g_stop="49086" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="483" polyA_stop="493"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E612038" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E612038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48626" e_stop="49086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTGCCTTCTATGTTATAGTATTTTATTGCGACTGAGTTTAAGGACACCTTGTCCATGAGTTTATTAACTTAATTCAAAATGAGTTTTTGGTTGTAATATTTTTTAAACTGACCCGGAGTTGGATTCCAAATTTG</genome_strand>
        <mrna_strand>TGGGGCATGAGTTTGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCGTGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTACTCAATCAGCGACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGATTGGGCCATGTTTCTCTTTGTTTAGAGGGATGCCATTCTTA-TTTTGTGTGTTGCATTTCAACATCTGTGTACTCGGTACTGATTTACTTGCCTTTTTTTGTCGGGAAAAAAGGTAGACTGAGTTGAGATCAATCAGTTGCCTTTTATGTGATAGTATTTTATTGCGACAGAGTTTAAGG--ACCTTGTCCATTAGTATATTCACTTATTTCAAAATGAG-TTTTGGTTGTAATATTTTCAAATCTAACCTGGAGTTGGATTCCAAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745462" ref_strand="+" ref_description="SGN-E745462 [GI|47105616]">
      <seq>gatctcattagggttgaagacacacgcctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacaggtaagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatgttgactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtctctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaataggttgcgctatttttctctttgtttagagggttgccacctcttatttttggtgttgcatttcaacatcctatgtactcggtattgttttacatacctttttttgtcaggaaaaaacaatgactgagtttagaccaatcagttgcctttttatgtgatggtatttcattgtaagagtttaaggaccttgtcgatgagtttattcacttgtttcaaaatgagtttttggttgtaatatcttcaaatccaacctgctgttgtattccaaagttggtgtagttcactaaacctgattcgtaatttcattttcataaacttcaaatgatgtgggttcttttgtcctactaattgtacaatcaaacataattgacaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="49328" stop="52473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49627" g_stop="49709" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49710" i_stop="50531" i_length="822">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50532" g_stop="50609" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="161" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="342" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="440" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51329" g_stop="52162" g_length="834"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="1274" r_length="834" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1276" polyA_stop="1292"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E745462" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1274</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49627" e_stop="49709"/>
          <exon e_start="50532" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="52162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCATTAGGGTTGAAGACACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTCTGTTAATTCATCTCGTCAATGTTGTTTAGATTGTTATTTGGTGCCTGATAGATCAGTTGTATTTTAGTCTTATTGGCTTTTTTTCCAGGTCTACACTGTATGTATCAGTTATACCTTTGCTAATTGTTTGCTATATGTGTAATACATCTGATATTATATTCTTGGTTGTTCCGTTCGATTTATGCTCTCAATCGTATCTGTTGATCTCAAGTGGTGCTGGTTAATATCGTATGTGTAAGTAATCAATTGCATTTAGTTACTGTCGCCACTGGATATTAGTGTATACAGTTTTTTATAATTGTATTTTGCTTTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATTCTATTGGATTGTTTTAATGAATACAACATTTGGATAGATTTTATGGTTCTACAGATAGAGCTAAAATAAGATCATTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAAATCAGACAAAATGGTCGCTACACAAAGTGAGACCGATACCTAACTGTTATTTTAATGATAGCTTAAGATTTGCACAATGAAATTGTGTAGTATAGTTCAAGTTATTTACTCTATGTATTGAAAAATTTGTTCTGTACCTTTGCGAAAGAACATGCTTCTAATGTTGTTTGACATGGATAGATTTTAAAAGAACCTGTGGAACAGCTTCCCTTTATATTTTTGGTCAATTGATTTTTGTTCTAACTTCTATCAGCTTTCATTTATATTAAGTGGTAAAATTTTTGCATTTAGGCTGGAAACATCATACTAATGTGAATTTTGTAATTTCTTGTCTATATATAGGCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCACCTCTTATTTTTGGTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCTTTTTTTGTCAGGAAAAAACAATGACTGAGTTTAGACCAATCAGTTGCCTTTTTATGTGATGGTATTTCATTGTAAGAGTTTAAGGACCTTGTCGATGAGTTTATTCACTTGTTTCAAAATGAGTTTTTGGTTGTAATATCTTCAAATCCAACCTGCTGTTGTATTCCAAAGTTGGTGTAGTTCACTAAACCTGATTCGTAATTTCATTTTCATAAACTTCAAATGATGTGGGTTCTTTTGTCCTACTAATTGTACAATCAAACATAATT</genome_strand>
        <mrna_strand>GATCTCATTAGGGTTGAAGACACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGGTAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG..........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGTTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCACCTCTTATTTTTGGTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCTTTTTTTGTCAGGAAAAAACAATGACTGAGTTTAGACCAATCAGTTGCCTTTTTATGTGATGGTATTTCATTGTAAGAGTTTAAGGACCTTGTCGATGAGTTTATTCACTTGTTTCAAAATGAGTTTTTGGTTGTAATATCTTCAAATCCAACCTGCTGTTGTATTCCAAAGTTGGTGTAGTTCACTAAACCTGATTCGTAATTTCATTTTCATAAACTTCAAATGATGTGGGTTCTTTTGTCCTACTAATTGTACAATCAAACATAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E724393" ref_strand="+" ref_description="SGN-E724393 [FC23DH10]">
      <seq>gggcgattggcggccaatcggccgaattatctcattagggtctcaatacacacgcctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtctctctacctaagggtaaaggtatcaagttatctatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="49325" stop="52014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49638" g_stop="49709" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="111" r_length="72" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49710" i_stop="50531" i_length="822">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50532" g_stop="50609" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="189" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="370" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="468" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51329" g_stop="51714" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="854" r_length="386" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E724393" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49638" e_stop="49709"/>
          <exon e_start="50532" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="51714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTGAAGACACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTCTGTTAATTCATCTCGTCAATGTTGTTTAGATTGTTATTTGGTGCCTGATAGATCAGTTGTATTTTAGTCTTATTGGCTTTTTTTCCAGGTCTACACTGTATGTATCAGTTATACCTTTGCTAATTGTTTGCTATATGTGTAATACATCTGATATTATATTCTTGGTTGTTCCGTTCGATTTATGCTCTCAATCGTATCTGTTGATCTCAAGTGGTGCTGGTTAATATCGTATGTGTAAGTAATCAATTGCATTTAGTTACTGTCGCCACTGGATATTAGTGTATACAGTTTTTTATAATTGTATTTTGCTTTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATTCTATTGGATTGTTTTAATGAATACAACATTTGGATAGATTTTATGGTTCTACAGATAGAGCTAAAATAAGATCATTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAAATCAGACAAAATGGTCGCTACACAAAGTGAGACCGATACCTAACTGTTATTTTAATGATAGCTTAAGATTTGCACAATGAAATTGTGTAGTATAGTTCAAGTTATTTACTCTATGTATTGAAAAATTTGTTCTGTACCTTTGCGAAAGAACATGCTTCTAATGTTGTTTGACATGGATAGATTTTAAAAGAACCTGTGGAACAGCTTCCCTTTATATTTTTGGTCAATTGATTTTTGTTCTAACTTCTATCAGCTTTCATTTATATTAAGTGGTAAAATTTTTGCATTTAGGCTGGAAACATCATACTAATGTGAATTTTGTAATTTCTTGTCTATATATAGGCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCAT</genome_strand>
        <mrna_strand>GTCTCAATACACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG..........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347462" ref_strand="+" ref_description="SGN-E347462 [cTOF-33-L13]">
      <seq>ttgaagacacacgcctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactncggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacaggggacgtgttggaattctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="49340" stop="51854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49640" g_stop="49709" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49710" i_stop="50531" i_length="822">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50532" g_stop="50609" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="149" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="0.94"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="330" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="428" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51329" g_stop="51554" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="654" r_length="226" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E347462" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49640" e_stop="49709"/>
          <exon e_start="50532" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="51554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGACACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTCTGTTAATTCATCTCGTCAATGTTGTTTAGATTGTTATTTGGTGCCTGATAGATCAGTTGTATTTTAGTCTTATTGGCTTTTTTTCCAGGTCTACACTGTATGTATCAGTTATACCTTTGCTAATTGTTTGCTATATGTGTAATACATCTGATATTATATTCTTGGTTGTTCCGTTCGATTTATGCTCTCAATCGTATCTGTTGATCTCAAGTGGTGCTGGTTAATATCGTATGTGTAAGTAATCAATTGCATTTAGTTACTGTCGCCACTGGATATTAGTGTATACAGTTTTTTATAATTGTATTTTGCTTTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATTCTATTGGATTGTTTTAATGAATACAACATTTGGATAGATTTTATGGTTCTACAGATAGAGCTAAAATAAGATCATTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAAATCAGACAAAATGGTCGCTACACAAAGTGAGACCGATACCTAACTGTTATTTTAATGATAGCTTAAGATTTGCACAATGAAATTGTGTAGTATAGTTCAAGTTATTTACTCTATGTATTGAAAAATTTGTTCTGTACCTTTGCGAAAGAACATGCTTCTAATGTTGTTTGACATGGATAGATTTTAAAAGAACCTGTGGAACAGCTTCCCTTTATATTTTTGGTCAATTGATTTTTGTTCTAACTTCTATCAGCTTTCATTTATATTAAGTGGTAAAATTTTTGCATTTAGGCTGGAAACATCATACTAATGTGAATTTTGTAATTTCTTGTCTATATATAGGCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTT-GGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTA</genome_strand>
        <mrna_strand>TTGAAGACACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTNCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG..........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321969" ref_strand="+" ref_description="SGN-E321969 [cTOB-29-M24]">
      <seq>gaagacacacgcctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggattccctgnggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtgtctctacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="49342" stop="51984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49642" g_stop="49709" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49710" i_stop="50531" i_length="822">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50532" g_stop="50609" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="146" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="327" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="425" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51329" g_stop="51684" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="781" r_length="356" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E321969" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49642" e_stop="49709"/>
          <exon e_start="50532" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="51684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTCTGTTAATTCATCTCGTCAATGTTGTTTAGATTGTTATTTGGTGCCTGATAGATCAGTTGTATTTTAGTCTTATTGGCTTTTTTTCCAGGTCTACACTGTATGTATCAGTTATACCTTTGCTAATTGTTTGCTATATGTGTAATACATCTGATATTATATTCTTGGTTGTTCCGTTCGATTTATGCTCTCAATCGTATCTGTTGATCTCAAGTGGTGCTGGTTAATATCGTATGTGTAAGTAATCAATTGCATTTAGTTACTGTCGCCACTGGATATTAGTGTATACAGTTTTTTATAATTGTATTTTGCTTTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATTCTATTGGATTGTTTTAATGAATACAACATTTGGATAGATTTTATGGTTCTACAGATAGAGCTAAAATAAGATCATTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAAATCAGACAAAATGGTCGCTACACAAAGTGAGACCGATACCTAACTGTTATTTTAATGATAGCTTAAGATTTGCACAATGAAATTGTGTAGTATAGTTCAAGTTATTTACTCTATGTATTGAAAAATTTGTTCTGTACCTTTGCGAAAGAACATGCTTCTAATGTTGTTTGACATGGATAGATTTTAAAAGAACCTGTGGAACAGCTTCCCTTTATATTTTTGGTCAATTGATTTTTGTTCTAACTTCTATCAGCTTTCATTTATATTAAGTGGTAAAATTTTTGCATTTAGGCTGGAAACATCATACTAATGTGAATTTTGTAATTTCTTGTCTATATATAGGCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACC</genome_strand>
        <mrna_strand>GAAGACACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG..........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGNGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E327367" ref_strand="+" ref_description="SGN-E327367 [cTOC-19-E13]">
      <seq>gaagacacacgcctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="49342" stop="51814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49642" g_stop="49709" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49710" i_stop="50531" i_length="822">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50532" g_stop="50609" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="146" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="327" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="425" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51329" g_stop="51514" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="611" r_length="186" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E327367" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49642" e_stop="49709"/>
          <exon e_start="50532" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="51514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTCTGTTAATTCATCTCGTCAATGTTGTTTAGATTGTTATTTGGTGCCTGATAGATCAGTTGTATTTTAGTCTTATTGGCTTTTTTTCCAGGTCTACACTGTATGTATCAGTTATACCTTTGCTAATTGTTTGCTATATGTGTAATACATCTGATATTATATTCTTGGTTGTTCCGTTCGATTTATGCTCTCAATCGTATCTGTTGATCTCAAGTGGTGCTGGTTAATATCGTATGTGTAAGTAATCAATTGCATTTAGTTACTGTCGCCACTGGATATTAGTGTATACAGTTTTTTATAATTGTATTTTGCTTTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATTCTATTGGATTGTTTTAATGAATACAACATTTGGATAGATTTTATGGTTCTACAGATAGAGCTAAAATAAGATCATTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAAATCAGACAAAATGGTCGCTACACAAAGTGAGACCGATACCTAACTGTTATTTTAATGATAGCTTAAGATTTGCACAATGAAATTGTGTAGTATAGTTCAAGTTATTTACTCTATGTATTGAAAAATTTGTTCTGTACCTTTGCGAAAGAACATGCTTCTAATGTTGTTTGACATGGATAGATTTTAAAAGAACCTGTGGAACAGCTTCCCTTTATATTTTTGGTCAATTGATTTTTGTTCTAACTTCTATCAGCTTTCATTTATATTAAGTGGTAAAATTTTTGCATTTAGGCTGGAAACATCATACTAATGTGAATTTTGTAATTTCTTGTCTATATATAGGCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATG</genome_strand>
        <mrna_strand>GAAGACACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG..........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E729973" ref_strand="+" ref_description="SGN-E729973 [LA22CF08]">
      <seq>gacacacgcctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtctctctaccctagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcacctacaactgcttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="49345" stop="52064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49645" g_stop="49709" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49710" i_stop="50531" i_length="822">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50532" g_stop="50609" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="143" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="324" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="422" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51329" g_stop="51764" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="858" r_length="436" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E729973" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>858</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49645" e_stop="49709"/>
          <exon e_start="50532" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="51764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTCTGTTAATTCATCTCGTCAATGTTGTTTAGATTGTTATTTGGTGCCTGATAGATCAGTTGTATTTTAGTCTTATTGGCTTTTTTTCCAGGTCTACACTGTATGTATCAGTTATACCTTTGCTAATTGTTTGCTATATGTGTAATACATCTGATATTATATTCTTGGTTGTTCCGTTCGATTTATGCTCTCAATCGTATCTGTTGATCTCAAGTGGTGCTGGTTAATATCGTATGTGTAAGTAATCAATTGCATTTAGTTACTGTCGCCACTGGATATTAGTGTATACAGTTTTTTATAATTGTATTTTGCTTTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATTCTATTGGATTGTTTTAATGAATACAACATTTGGATAGATTTTATGGTTCTACAGATAGAGCTAAAATAAGATCATTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAAATCAGACAAAATGGTCGCTACACAAAGTGAGACCGATACCTAACTGTTATTTTAATGATAGCTTAAGATTTGCACAATGAAATTGTGTAGTATAGTTCAAGTTATTTACTCTATGTATTGAAAAATTTGTTCTGTACCTTTGCGAAAGAACATGCTTCTAATGTTGTTTGACATGGATAGATTTTAAAAGAACCTGTGGAACAGCTTCCCTTTATATTTTTGGTCAATTGATTTTTGTTCTAACTTCTATCAGCTTTCATTTATATTAAGTGGTAAAATTTTTGCATTTAGGCTGGAAACATCATACTAATGTGAATTTTGTAATTTCTTGTCTATATATAGGCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAA</genome_strand>
        <mrna_strand>GACACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG..........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCCTAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCACCTACAACTGCTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E707848" ref_strand="+" ref_description="SGN-E707848 [FA34AE12]">
      <seq>cactcacgcctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatgtggtgctggttaatatcgtatgtgcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtctctctacctaagggtaaaggtatcaagttatctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="49346" stop="52011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49645" g_stop="49709" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49710" i_stop="49938" i_length="229">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49939" g_stop="49961" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="88" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49962" i_stop="50531" i_length="570">
            <donor d_prob="0.059" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50532" g_stop="50609" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="166" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="347" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="445" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51329" g_stop="51711" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="828" r_length="383" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E707848" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49645" e_stop="49709"/>
          <exon e_start="49939" e_stop="49961"/>
          <exon e_start="50532" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="51711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTCTGTTAATTCATCTCGTCAATGTTGTTTAGATTGTTATTTGGTGCCTGATAGATCAGTTGTATTTTAGTCTTATTGGCTTTTTTTCCAGGTCTACACTGTATGTATCAGTTATACCTTTGCTAATTGTTTGCTATATGTGTAATACATCTGATATTATATTCTTGGTTGTTCCGTTCGATTTATGCTCTCAATCGTATCTGTTGATCTCAAGTGGTGCTGGTTAATATCGTATGTGTAAGTAATCAATTGCATTTAGTTACTGTCGCCACTGGATATTAGTGTATACAGTTTTTTATAATTGTATTTTGCTTTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATTCTATTGGATTGTTTTAATGAATACAACATTTGGATAGATTTTATGGTTCTACAGATAGAGCTAAAATAAGATCATTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAAATCAGACAAAATGGTCGCTACACAAAGTGAGACCGATACCTAACTGTTATTTTAATGATAGCTTAAGATTTGCACAATGAAATTGTGTAGTATAGTTCAAGTTATTTACTCTATGTATTGAAAAATTTGTTCTGTACCTTTGCGAAAGAACATGCTTCTAATGTTGTTTGACATGGATAGATTTTAAAAGAACCTGTGGAACAGCTTCCCTTTATATTTTTGGTCAATTGATTTTTGTTCTAACTTCTATCAGCTTTCATTTATATTAAGTGGTAAAATTTTTGCATTTAGGCTGGAAACATCATACTAATGTGAATTTTGTAATTTCTTGTCTATATATAGGCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTAT</genome_strand>
        <mrna_strand>CACTCACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG.....................................................................................................................................................................................................................................TGGTGCTGGTTAATATCGTATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG..........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340873" ref_strand="+" ref_description="SGN-E340873 [cTOF-5-N6]">
      <seq>gacacacgcctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataactncggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacggggaacgtgttggaattcttaagacagggagaagcacaaggtagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="49345" stop="51880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49645" g_stop="49709" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49710" i_stop="50531" i_length="822">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50532" g_stop="50609" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="143" r_length="78" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="0.92"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="324" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="422" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51329" g_stop="51580" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="672" r_length="250" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E340873" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49645" e_stop="49709"/>
          <exon e_start="50532" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="51580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTCTGTTAATTCATCTCGTCAATGTTGTTTAGATTGTTATTTGGTGCCTGATAGATCAGTTGTATTTTAGTCTTATTGGCTTTTTTTCCAGGTCTACACTGTATGTATCAGTTATACCTTTGCTAATTGTTTGCTATATGTGTAATACATCTGATATTATATTCTTGGTTGTTCCGTTCGATTTATGCTCTCAATCGTATCTGTTGATCTCAAGTGGTGCTGGTTAATATCGTATGTGTAAGTAATCAATTGCATTTAGTTACTGTCGCCACTGGATATTAGTGTATACAGTTTTTTATAATTGTATTTTGCTTTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATTCTATTGGATTGTTTTAATGAATACAACATTTGGATAGATTTTATGGTTCTACAGATAGAGCTAAAATAAGATCATTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAAATCAGACAAAATGGTCGCTACACAAAGTGAGACCGATACCTAACTGTTATTTTAATGATAGCTTAAGATTTGCACAATGAAATTGTGTAGTATAGTTCAAGTTATTTACTCTATGTATTGAAAAATTTGTTCTGTACCTTTGCGAAAGAACATGCTTCTAATGTTGTTTGACATGGATAGATTTTAAAAGAACCTGTGGAACAGCTTCCCTTTATATTTTTGGTCAATTGATTTTTGTTCTAACTTCTATCAGCTTTCATTTATATTAAGTGGTAAAATTTTTGCATTTAGGCTGGAAACATCATACTAATGTGAATTTTGTAATTTCTTGTCTATATATAGGCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGC</genome_strand>
        <mrna_strand>GACACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAACTNCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG..........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACGGGGAACGTGTTGGAATTCTTAAG-ACAGGGAGAAGCACAA-GGTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336662" ref_strand="+" ref_description="SGN-E336662 [cTOE-4-F10]">
      <seq>acacacgcctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="49346" stop="51806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49646" g_stop="49709" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49710" i_stop="50531" i_length="822">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50532" g_stop="50609" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="142" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="323" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="421" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51329" g_stop="51506" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="599" r_length="178" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E336662" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49646" e_stop="49709"/>
          <exon e_start="50532" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="51506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTCTGTTAATTCATCTCGTCAATGTTGTTTAGATTGTTATTTGGTGCCTGATAGATCAGTTGTATTTTAGTCTTATTGGCTTTTTTTCCAGGTCTACACTGTATGTATCAGTTATACCTTTGCTAATTGTTTGCTATATGTGTAATACATCTGATATTATATTCTTGGTTGTTCCGTTCGATTTATGCTCTCAATCGTATCTGTTGATCTCAAGTGGTGCTGGTTAATATCGTATGTGTAAGTAATCAATTGCATTTAGTTACTGTCGCCACTGGATATTAGTGTATACAGTTTTTTATAATTGTATTTTGCTTTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATTCTATTGGATTGTTTTAATGAATACAACATTTGGATAGATTTTATGGTTCTACAGATAGAGCTAAAATAAGATCATTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAAATCAGACAAAATGGTCGCTACACAAAGTGAGACCGATACCTAACTGTTATTTTAATGATAGCTTAAGATTTGCACAATGAAATTGTGTAGTATAGTTCAAGTTATTTACTCTATGTATTGAAAAATTTGTTCTGTACCTTTGCGAAAGAACATGCTTCTAATGTTGTTTGACATGGATAGATTTTAAAAGAACCTGTGGAACAGCTTCCCTTTATATTTTTGGTCAATTGATTTTTGTTCTAACTTCTATCAGCTTTCATTTATATTAAGTGGTAAAATTTTTGCATTTAGGCTGGAAACATCATACTAATGTGAATTTTGTAATTTCTTGTCTATATATAGGCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATG</genome_strand>
        <mrna_strand>ACACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG..........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E301022" ref_strand="+" ref_description="SGN-E301022 [cLEW-22-M3]">
      <seq>acacacgcctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaaaggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaaaggtatcccatatctcaacacgtatgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="49346" stop="51700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49646" g_stop="49709" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49710" i_stop="50531" i_length="822">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50532" g_stop="50609" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="142" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="323" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="421" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51329" g_stop="51400" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="493" r_length="72" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E301022" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49646" e_stop="49709"/>
          <exon e_start="50532" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="51400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTCTGTTAATTCATCTCGTCAATGTTGTTTAGATTGTTATTTGGTGCCTGATAGATCAGTTGTATTTTAGTCTTATTGGCTTTTTTTCCAGGTCTACACTGTATGTATCAGTTATACCTTTGCTAATTGTTTGCTATATGTGTAATACATCTGATATTATATTCTTGGTTGTTCCGTTCGATTTATGCTCTCAATCGTATCTGTTGATCTCAAGTGGTGCTGGTTAATATCGTATGTGTAAGTAATCAATTGCATTTAGTTACTGTCGCCACTGGATATTAGTGTATACAGTTTTTTATAATTGTATTTTGCTTTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATTCTATTGGATTGTTTTAATGAATACAACATTTGGATAGATTTTATGGTTCTACAGATAGAGCTAAAATAAGATCATTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAAATCAGACAAAATGGTCGCTACACAAAGTGAGACCGATACCTAACTGTTATTTTAATGATAGCTTAAGATTTGCACAATGAAATTGTGTAGTATAGTTCAAGTTATTTACTCTATGTATTGAAAAATTTGTTCTGTACCTTTGCGAAAGAACATGCTTCTAATGTTGTTTGACATGGATAGATTTTAAAAGAACCTGTGGAACAGCTTCCCTTTATATTTTTGGTCAATTGATTTTTGTTCTAACTTCTATCAGCTTTCATTTATATTAAGTGGTAAAATTTTTGCATTTAGGCTGGAAACATCATACTAATGTGAATTTTGTAATTTCTTGTCTATATATAGGCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGA</genome_strand>
        <mrna_strand>ACACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAAGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG..........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAAGGTATCCCATATCTCAACACGTATGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343344" ref_strand="+" ref_description="SGN-E343344 [cTOF-17-P22]">
      <seq>acacacgcctctcgccggtagacgtgactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcatgggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacatgttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttctggttgatggcataagtataacacataagacttaccctgctggttgcatggacgttgccactattccatagactaatgatagctttcgacttctctatgacactaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="49346" stop="54673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49646" g_stop="49709" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49710" i_stop="50531" i_length="822">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50532" g_stop="50609" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="142" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="323" r_length="181" r_score="0.950"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="0.86"/>
            <acceptor a_prob="0.984" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51141" g_stop="51195" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="378" r_length="55" r_score="0.873"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E343344" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49646" e_stop="49709"/>
          <exon e_start="50532" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTCTGTTAATTCATCTCGTCAATGTTGTTTAGATTGTTATTTGGTGCCTGATAGATCAGTTGTATTTTAGTCTTATTGGCTTTTTTTCCAGGTCTACACTGTATGTATCAGTTATACCTTTGCTAATTGTTTGCTATATGTGTAATACATCTGATATTATATTCTTGGTTGTTCCGTTCGATTTATGCTCTCAATCGTATCTGTTGATCTCAAGTGGTGCTGGTTAATATCGTATGTGTAAGTAATCAATTGCATTTAGTTACTGTCGCCACTGGATATTAGTGTATACAGTTTTTTATAATTGTATTTTGCTTTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATTCTATTGGATTGTTTTAATGAATACAACATTTGGATAGATTTTATGGTTCTACAGATAGAGCTAAAATAAGATCATTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAAATCAGACAAAATGGTCGCTACACAAAGTGAGACCGATACCTAACTGTTATTTTAATGATAGCTTAAGATTTGCACAATGAAATTGTGTAGTATAGTTCAAGTTATTTACTCTATGTATTGAAAAATTTGTTCTGTACCTTTGCGAAAGAACATGCTTCTAATGTTGTTTGACATGGATAGATTTTAAAAGAACCTGTGGAACAGCTTCCCTTTATATTTTTGGTCAATTGATTTTTGTTCTAACTTCTATCAGCTTTCATTTATATTAAGTGGTAAAATTTTTGCATTTAGGCTGGAAACATCATACTAATGTGAATTTTGTAATTTCTTGTCTATATATAGGCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAA</genome_strand>
        <mrna_strand>ACACACGCCTCTCGCCGGTAGACGTGACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATGGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACATGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTCTGGTTGATGGCATAAGTATAACACATAAGACTTACCCTGCTGGTTGCATGG................................................................................................................................................................................................................................................................ACGTTGCCACTATTCCATAGACTAATGATAGCTTTCGACTTCTCTATGACACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E708726" ref_strand="+" ref_description="SGN-E708726 [FA36CD09]">
      <seq>cacacgcctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggcaaaggtagtaagccatgggtctctctacctaagggtaaaggtatcaagttctctatcattgaaaaagctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatgataggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="49347" stop="52076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49647" g_stop="49709" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49710" i_stop="50531" i_length="822">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50532" g_stop="50609" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="141" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="322" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="420" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51329" g_stop="51776" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="868" r_length="448" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E708726" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>868</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49647" e_stop="49709"/>
          <exon e_start="50532" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="51776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTCTGTTAATTCATCTCGTCAATGTTGTTTAGATTGTTATTTGGTGCCTGATAGATCAGTTGTATTTTAGTCTTATTGGCTTTTTTTCCAGGTCTACACTGTATGTATCAGTTATACCTTTGCTAATTGTTTGCTATATGTGTAATACATCTGATATTATATTCTTGGTTGTTCCGTTCGATTTATGCTCTCAATCGTATCTGTTGATCTCAAGTGGTGCTGGTTAATATCGTATGTGTAAGTAATCAATTGCATTTAGTTACTGTCGCCACTGGATATTAGTGTATACAGTTTTTTATAATTGTATTTTGCTTTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATTCTATTGGATTGTTTTAATGAATACAACATTTGGATAGATTTTATGGTTCTACAGATAGAGCTAAAATAAGATCATTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAAATCAGACAAAATGGTCGCTACACAAAGTGAGACCGATACCTAACTGTTATTTTAATGATAGCTTAAGATTTGCACAATGAAATTGTGTAGTATAGTTCAAGTTATTTACTCTATGTATTGAAAAATTTGTTCTGTACCTTTGCGAAAGAACATGCTTCTAATGTTGTTTGACATGGATAGATTTTAAAAGAACCTGTGGAACAGCTTCCCTTTATATTTTTGGTCAATTGATTTTTGTTCTAACTTCTATCAGCTTTCATTTATATTAAGTGGTAAAATTTTTGCATTTAGGCTGGAAACATCATACTAATGTGAATTTTGTAATTTCTTGTCTATATATAGGCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTG</genome_strand>
        <mrna_strand>CACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG..........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTCTCTATCATTGAAAAAGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E703076" ref_strand="+" ref_description="SGN-E703076 [FA20CA01]">
      <seq>cacacgcctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtctctctacctaagggtaaaggtatcaagttatctatcattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="49347" stop="52017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49647" g_stop="49709" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49710" i_stop="50531" i_length="822">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50532" g_stop="50609" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="141" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="322" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="420" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51329" g_stop="51717" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="809" r_length="389" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E703076" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49647" e_stop="49709"/>
          <exon e_start="50532" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="51717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTCTGTTAATTCATCTCGTCAATGTTGTTTAGATTGTTATTTGGTGCCTGATAGATCAGTTGTATTTTAGTCTTATTGGCTTTTTTTCCAGGTCTACACTGTATGTATCAGTTATACCTTTGCTAATTGTTTGCTATATGTGTAATACATCTGATATTATATTCTTGGTTGTTCCGTTCGATTTATGCTCTCAATCGTATCTGTTGATCTCAAGTGGTGCTGGTTAATATCGTATGTGTAAGTAATCAATTGCATTTAGTTACTGTCGCCACTGGATATTAGTGTATACAGTTTTTTATAATTGTATTTTGCTTTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATTCTATTGGATTGTTTTAATGAATACAACATTTGGATAGATTTTATGGTTCTACAGATAGAGCTAAAATAAGATCATTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAAATCAGACAAAATGGTCGCTACACAAAGTGAGACCGATACCTAACTGTTATTTTAATGATAGCTTAAGATTTGCACAATGAAATTGTGTAGTATAGTTCAAGTTATTTACTCTATGTATTGAAAAATTTGTTCTGTACCTTTGCGAAAGAACATGCTTCTAATGTTGTTTGACATGGATAGATTTTAAAAGAACCTGTGGAACAGCTTCCCTTTATATTTTTGGTCAATTGATTTTTGTTCTAACTTCTATCAGCTTTCATTTATATTAAGTGGTAAAATTTTTGCATTTAGGCTGGAAACATCATACTAATGTGAATTTTGTAATTTCTTGTCTATATATAGGCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGA</genome_strand>
        <mrna_strand>CACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG..........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E325867" ref_strand="+" ref_description="SGN-E325867 [cTOC-12-L16]">
      <seq>acacgcctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="49348" stop="51805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49648" g_stop="49709" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49710" i_stop="50531" i_length="822">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50532" g_stop="50609" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="140" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="321" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="419" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51329" g_stop="51505" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="596" r_length="177" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E325867" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49648" e_stop="49709"/>
          <exon e_start="50532" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="51505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTCTGTTAATTCATCTCGTCAATGTTGTTTAGATTGTTATTTGGTGCCTGATAGATCAGTTGTATTTTAGTCTTATTGGCTTTTTTTCCAGGTCTACACTGTATGTATCAGTTATACCTTTGCTAATTGTTTGCTATATGTGTAATACATCTGATATTATATTCTTGGTTGTTCCGTTCGATTTATGCTCTCAATCGTATCTGTTGATCTCAAGTGGTGCTGGTTAATATCGTATGTGTAAGTAATCAATTGCATTTAGTTACTGTCGCCACTGGATATTAGTGTATACAGTTTTTTATAATTGTATTTTGCTTTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATTCTATTGGATTGTTTTAATGAATACAACATTTGGATAGATTTTATGGTTCTACAGATAGAGCTAAAATAAGATCATTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAAATCAGACAAAATGGTCGCTACACAAAGTGAGACCGATACCTAACTGTTATTTTAATGATAGCTTAAGATTTGCACAATGAAATTGTGTAGTATAGTTCAAGTTATTTACTCTATGTATTGAAAAATTTGTTCTGTACCTTTGCGAAAGAACATGCTTCTAATGTTGTTTGACATGGATAGATTTTAAAAGAACCTGTGGAACAGCTTCCCTTTATATTTTTGGTCAATTGATTTTTGTTCTAACTTCTATCAGCTTTCATTTATATTAAGTGGTAAAATTTTTGCATTTAGGCTGGAAACATCATACTAATGTGAATTTTGTAATTTCTTGTCTATATATAGGCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAAT</genome_strand>
        <mrna_strand>ACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG..........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E212410" ref_strand="+" ref_description="SGN-E212410 [cLEC-74-J3]">
      <seq>acacgcctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacagttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaaggtttaaacctgtttcctgcttcttctttgttccggcttgctttggatgctgtgctgttaaagtagtgaccttgttttctgctctctgcagttcaaactttgcaaggttcgatcagtgcagtttggacagaatggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaagccaatgacaccatcaagctggacttagattccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="49348" stop="51768"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49648" g_stop="49709" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49710" i_stop="50531" i_length="822">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50532" g_stop="50609" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="140" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="321" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51141" g_stop="51468" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="649" r_length="328" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E212410" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49648" e_stop="49709"/>
          <exon e_start="50532" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTCTGTTAATTCATCTCGTCAATGTTGTTTAGATTGTTATTTGGTGCCTGATAGATCAGTTGTATTTTAGTCTTATTGGCTTTTTTTCCAGGTCTACACTGTATGTATCAGTTATACCTTTGCTAATTGTTTGCTATATGTGTAATACATCTGATATTATATTCTTGGTTGTTCCGTTCGATTTATGCTCTCAATCGTATCTGTTGATCTCAAGTGGTGCTGGTTAATATCGTATGTGTAAGTAATCAATTGCATTTAGTTACTGTCGCCACTGGATATTAGTGTATACAGTTTTTTATAATTGTATTTTGCTTTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATTCTATTGGATTGTTTTAATGAATACAACATTTGGATAGATTTTATGGTTCTACAGATAGAGCTAAAATAAGATCATTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAAATCAGACAAAATGGTCGCTACACAAAGTGAGACCGATACCTAACTGTTATTTTAATGATAGCTTAAGATTTGCACAATGAAATTGTGTAGTATAGTTCAAGTTATTTACTCTATGTATTGAAAAATTTGTTCTGTACCTTTGCGAAAGAACATGCTTCTAATGTTGTTTGACATGGATAGATTTTAAAAGAACCTGTGGAACAGCTTCCCTTTATATTTTTGGTCAATTGATTTTTGTTCTAACTTCTATCAGCTTTCATTTATATTAAGTGGTAAAATTTTTGCATTTAGGCTGGAAACATCATACTAATGTGAATTTTGTAATTTCTTGTCTATATATAGGCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAA</genome_strand>
        <mrna_strand>ACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACAGTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTAAACCTGTTTCCTGCTTCTTCTTTGTTCCGGCTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAATGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAAGCCAATGACACCATCAAGCTGGACTTAGATTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E315630" ref_strand="+" ref_description="SGN-E315630 [cTOA-22-J21]">
      <seq>acacgcctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="49348" stop="51519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49648" g_stop="49709" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49710" i_stop="50531" i_length="822">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50532" g_stop="50609" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="140" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="321" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51141" g_stop="51219" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="400" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E315630" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49648" e_stop="49709"/>
          <exon e_start="50532" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTCTGTTAATTCATCTCGTCAATGTTGTTTAGATTGTTATTTGGTGCCTGATAGATCAGTTGTATTTTAGTCTTATTGGCTTTTTTTCCAGGTCTACACTGTATGTATCAGTTATACCTTTGCTAATTGTTTGCTATATGTGTAATACATCTGATATTATATTCTTGGTTGTTCCGTTCGATTTATGCTCTCAATCGTATCTGTTGATCTCAAGTGGTGCTGGTTAATATCGTATGTGTAAGTAATCAATTGCATTTAGTTACTGTCGCCACTGGATATTAGTGTATACAGTTTTTTATAATTGTATTTTGCTTTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATTCTATTGGATTGTTTTAATGAATACAACATTTGGATAGATTTTATGGTTCTACAGATAGAGCTAAAATAAGATCATTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAAATCAGACAAAATGGTCGCTACACAAAGTGAGACCGATACCTAACTGTTATTTTAATGATAGCTTAAGATTTGCACAATGAAATTGTGTAGTATAGTTCAAGTTATTTACTCTATGTATTGAAAAATTTGTTCTGTACCTTTGCGAAAGAACATGCTTCTAATGTTGTTTGACATGGATAGATTTTAAAAGAACCTGTGGAACAGCTTCCCTTTATATTTTTGGTCAATTGATTTTTGTTCTAACTTCTATCAGCTTTCATTTATATTAAGTGGTAAAATTTTTGCATTTAGGCTGGAAACATCATACTAATGTGAATTTTGTAATTTCTTGTCTATATATAGGCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACT</genome_strand>
        <mrna_strand>ACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322641" ref_strand="+" ref_description="SGN-E322641 [cTOB-26-A14]">
      <seq>acgcctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataaagatgttgacttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="49350" stop="51785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49650" g_stop="49709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49710" i_stop="50531" i_length="822">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50532" g_stop="50609" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="138" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="319" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="417" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51329" g_stop="51485" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="574" r_length="157" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E322641" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49650" e_stop="49709"/>
          <exon e_start="50532" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="51485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTCTGTTAATTCATCTCGTCAATGTTGTTTAGATTGTTATTTGGTGCCTGATAGATCAGTTGTATTTTAGTCTTATTGGCTTTTTTTCCAGGTCTACACTGTATGTATCAGTTATACCTTTGCTAATTGTTTGCTATATGTGTAATACATCTGATATTATATTCTTGGTTGTTCCGTTCGATTTATGCTCTCAATCGTATCTGTTGATCTCAAGTGGTGCTGGTTAATATCGTATGTGTAAGTAATCAATTGCATTTAGTTACTGTCGCCACTGGATATTAGTGTATACAGTTTTTTATAATTGTATTTTGCTTTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATTCTATTGGATTGTTTTAATGAATACAACATTTGGATAGATTTTATGGTTCTACAGATAGAGCTAAAATAAGATCATTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAAATCAGACAAAATGGTCGCTACACAAAGTGAGACCGATACCTAACTGTTATTTTAATGATAGCTTAAGATTTGCACAATGAAATTGTGTAGTATAGTTCAAGTTATTTACTCTATGTATTGAAAAATTTGTTCTGTACCTTTGCGAAAGAACATGCTTCTAATGTTGTTTGACATGGATAGATTTTAAAAGAACCTGTGGAACAGCTTCCCTTTATATTTTTGGTCAATTGATTTTTGTTCTAACTTCTATCAGCTTTCATTTATATTAAGTGGTAAAATTTTTGCATTTAGGCTGGAAACATCATACTAATGTGAATTTTGTAATTTCTTGTCTATATATAGGCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCA</genome_strand>
        <mrna_strand>ACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG..........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAAGATGTTGACTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321706" ref_strand="+" ref_description="SGN-E321706 [cTOB-25-I13]">
      <seq>acgcctctcgccggtagacgtcactctcggcagctaatctttcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgaaggcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctccacacgtatgatggaaaaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="49350" stop="51750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49650" g_stop="49709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49710" i_stop="50531" i_length="822">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50532" g_stop="50609" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="138" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="319" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="417" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51329" g_stop="51450" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="539" r_length="122" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E321706" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49650" e_stop="49709"/>
          <exon e_start="50532" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="51450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTCTGTTAATTCATCTCGTCAATGTTGTTTAGATTGTTATTTGGTGCCTGATAGATCAGTTGTATTTTAGTCTTATTGGCTTTTTTTCCAGGTCTACACTGTATGTATCAGTTATACCTTTGCTAATTGTTTGCTATATGTGTAATACATCTGATATTATATTCTTGGTTGTTCCGTTCGATTTATGCTCTCAATCGTATCTGTTGATCTCAAGTGGTGCTGGTTAATATCGTATGTGTAAGTAATCAATTGCATTTAGTTACTGTCGCCACTGGATATTAGTGTATACAGTTTTTTATAATTGTATTTTGCTTTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATTCTATTGGATTGTTTTAATGAATACAACATTTGGATAGATTTTATGGTTCTACAGATAGAGCTAAAATAAGATCATTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAAATCAGACAAAATGGTCGCTACACAAAGTGAGACCGATACCTAACTGTTATTTTAATGATAGCTTAAGATTTGCACAATGAAATTGTGTAGTATAGTTCAAGTTATTTACTCTATGTATTGAAAAATTTGTTCTGTACCTTTGCGAAAGAACATGCTTCTAATGTTGTTTGACATGGATAGATTTTAAAAGAACCTGTGGAACAGCTTCCCTTTATATTTTTGGTCAATTGATTTTTGTTCTAACTTCTATCAGCTTTCATTTATATTAAGTGGTAAAATTTTTGCATTTAGGCTGGAAACATCATACTAATGTGAATTTTGTAATTTCTTGTCTATATATAGGCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAA</genome_strand>
        <mrna_strand>ACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTTTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAAGGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG..........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCCACACGTATGATGGAAAAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E279640" ref_strand="+" ref_description="SGN-E279640 [cLER-5-O19]">
      <seq>acgcctctcgccggtagacgtcactctcggctgctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggctgaaatatgcgttgacctaccgtgaggtcatttctatctcgatgcaacgccaagttatggttgatgggaaagttataacacataacacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgcctacactcacttatagatgaggaagccaagttcaaactttgcaaggtacgatcactgcagtttgaacagaagggtatcccatatctcaacacgtatgatggaagaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="49350" stop="51707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49650" g_stop="49709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49710" i_stop="50531" i_length="822">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50532" g_stop="50609" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="138" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="319" r_length="181" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="417" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.968" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51329" g_stop="51407" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="496" r_length="79" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E279640" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49650" e_stop="49709"/>
          <exon e_start="50532" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="51407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTCTGTTAATTCATCTCGTCAATGTTGTTTAGATTGTTATTTGGTGCCTGATAGATCAGTTGTATTTTAGTCTTATTGGCTTTTTTTCCAGGTCTACACTGTATGTATCAGTTATACCTTTGCTAATTGTTTGCTATATGTGTAATACATCTGATATTATATTCTTGGTTGTTCCGTTCGATTTATGCTCTCAATCGTATCTGTTGATCTCAAGTGGTGCTGGTTAATATCGTATGTGTAAGTAATCAATTGCATTTAGTTACTGTCGCCACTGGATATTAGTGTATACAGTTTTTTATAATTGTATTTTGCTTTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATTCTATTGGATTGTTTTAATGAATACAACATTTGGATAGATTTTATGGTTCTACAGATAGAGCTAAAATAAGATCATTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAAATCAGACAAAATGGTCGCTACACAAAGTGAGACCGATACCTAACTGTTATTTTAATGATAGCTTAAGATTTGCACAATGAAATTGTGTAGTATAGTTCAAGTTATTTACTCTATGTATTGAAAAATTTGTTCTGTACCTTTGCGAAAGAACATGCTTCTAATGTTGTTTGACATGGATAGATTTTAAAAGAACCTGTGGAACAGCTTCCCTTTATATTTTTGGTCAATTGATTTTTGTTCTAACTTCTATCAGCTTTCATTTATATTAAGTGGTAAAATTTTTGCATTTAGGCTGGAAACATCATACTAATGTGAATTTTGTAATTTCTTGTCTATATATAGGCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAA</genome_strand>
        <mrna_strand>ACGCCTCTCGCCGGTAGACGTCACTCTCGGCTGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGCTGAAATATGCGTTGACCTACCGTGAGGTCATTTCTATCTCGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTATAACACATAACACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTACACTCACTTATAGATGAGGAAGCCAAG..........................................................................................TTCAAACTTTGCAAGGTACGATCACTGCAGTTTGAACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323971" ref_strand="+" ref_description="SGN-E323971 [cTOC-3-O24]">
      <seq>acgcctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="49350" stop="51700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49650" g_stop="49709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49710" i_stop="50531" i_length="822">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50532" g_stop="50609" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="138" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="319" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="417" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51329" g_stop="51400" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="489" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E323971" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49650" e_stop="49709"/>
          <exon e_start="50532" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="51400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTCTGTTAATTCATCTCGTCAATGTTGTTTAGATTGTTATTTGGTGCCTGATAGATCAGTTGTATTTTAGTCTTATTGGCTTTTTTTCCAGGTCTACACTGTATGTATCAGTTATACCTTTGCTAATTGTTTGCTATATGTGTAATACATCTGATATTATATTCTTGGTTGTTCCGTTCGATTTATGCTCTCAATCGTATCTGTTGATCTCAAGTGGTGCTGGTTAATATCGTATGTGTAAGTAATCAATTGCATTTAGTTACTGTCGCCACTGGATATTAGTGTATACAGTTTTTTATAATTGTATTTTGCTTTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATTCTATTGGATTGTTTTAATGAATACAACATTTGGATAGATTTTATGGTTCTACAGATAGAGCTAAAATAAGATCATTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAAATCAGACAAAATGGTCGCTACACAAAGTGAGACCGATACCTAACTGTTATTTTAATGATAGCTTAAGATTTGCACAATGAAATTGTGTAGTATAGTTCAAGTTATTTACTCTATGTATTGAAAAATTTGTTCTGTACCTTTGCGAAAGAACATGCTTCTAATGTTGTTTGACATGGATAGATTTTAAAAGAACCTGTGGAACAGCTTCCCTTTATATTTTTGGTCAATTGATTTTTGTTCTAACTTCTATCAGCTTTCATTTATATTAAGTGGTAAAATTTTTGCATTTAGGCTGGAAACATCATACTAATGTGAATTTTGTAATTTCTTGTCTATATATAGGCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGA</genome_strand>
        <mrna_strand>ACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG..........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700467" ref_strand="+" ref_description="SGN-E700467 [FA13AH03]">
      <seq>gccattttacctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggattcccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtctctctacctaagggtaaaggtatcaagttatctatcattgaaaaagctcgcaagaggaatggctgctcaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="49353" stop="52048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49652" g_stop="49709" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="66" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49710" i_stop="50531" i_length="822">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50532" g_stop="50609" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="144" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="325" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="423" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51329" g_stop="51748" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="845" r_length="422" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E700467" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49652" e_stop="49709"/>
          <exon e_start="50532" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="51748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTCTGTTAATTCATCTCGTCAATGTTGTTTAGATTGTTATTTGGTGCCTGATAGATCAGTTGTATTTTAGTCTTATTGGCTTTTTTTCCAGGTCTACACTGTATGTATCAGTTATACCTTTGCTAATTGTTTGCTATATGTGTAATACATCTGATATTATATTCTTGGTTGTTCCGTTCGATTTATGCTCTCAATCGTATCTGTTGATCTCAAGTGGTGCTGGTTAATATCGTATGTGTAAGTAATCAATTGCATTTAGTTACTGTCGCCACTGGATATTAGTGTATACAGTTTTTTATAATTGTATTTTGCTTTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATTCTATTGGATTGTTTTAATGAATACAACATTTGGATAGATTTTATGGTTCTACAGATAGAGCTAAAATAAGATCATTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAAATCAGACAAAATGGTCGCTACACAAAGTGAGACCGATACCTAACTGTTATTTTAATGATAGCTTAAGATTTGCACAATGAAATTGTGTAGTATAGTTCAAGTTATTTACTCTATGTATTGAAAAATTTGTTCTGTACCTTTGCGAAAGAACATGCTTCTAATGTTGTTTGACATGGATAGATTTTAAAAGAACCTGTGGAACAGCTTCCCTTTATATTTTTGGTCAATTGATTTTTGTTCTAACTTCTATCAGCTTTCATTTATATTAAGTGGTAAAATTTTTGCATTTAGGCTGGAAACATCATACTAATGTGAATTTTGTAATTTCTTGTCTATATATAGGCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATT-CCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGG-ATGGCTGCTCAATCA</genome_strand>
        <mrna_strand>ACCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG..........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAAAAGCTCGCAAGAGGAATGGCTGCTCAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209872" ref_strand="+" ref_description="SGN-E209872 [cLEC-52-I12]">
      <seq>gcctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatcttaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcattaagtttgatgttggtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="49352" stop="51805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49652" g_stop="49709" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49710" i_stop="50531" i_length="822">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50532" g_stop="50609" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="136" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="317" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="415" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51329" g_stop="51505" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="592" r_length="177" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E209872" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49652" e_stop="49709"/>
          <exon e_start="50532" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="51505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTCTGTTAATTCATCTCGTCAATGTTGTTTAGATTGTTATTTGGTGCCTGATAGATCAGTTGTATTTTAGTCTTATTGGCTTTTTTTCCAGGTCTACACTGTATGTATCAGTTATACCTTTGCTAATTGTTTGCTATATGTGTAATACATCTGATATTATATTCTTGGTTGTTCCGTTCGATTTATGCTCTCAATCGTATCTGTTGATCTCAAGTGGTGCTGGTTAATATCGTATGTGTAAGTAATCAATTGCATTTAGTTACTGTCGCCACTGGATATTAGTGTATACAGTTTTTTATAATTGTATTTTGCTTTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATTCTATTGGATTGTTTTAATGAATACAACATTTGGATAGATTTTATGGTTCTACAGATAGAGCTAAAATAAGATCATTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAAATCAGACAAAATGGTCGCTACACAAAGTGAGACCGATACCTAACTGTTATTTTAATGATAGCTTAAGATTTGCACAATGAAATTGTGTAGTATAGTTCAAGTTATTTACTCTATGTATTGAAAAATTTGTTCTGTACCTTTGCGAAAGAACATGCTTCTAATGTTGTTTGACATGGATAGATTTTAAAAGAACCTGTGGAACAGCTTCCCTTTATATTTTTGGTCAATTGATTTTTGTTCTAACTTCTATCAGCTTTCATTTATATTAAGTGGTAAAATTTTTGCATTTAGGCTGGAAACATCATACTAATGTGAATTTTGTAATTTCTTGTCTATATATAGGCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAAT</genome_strand>
        <mrna_strand>GCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG..........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTTAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATTAAGTTTGATGTTGGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331024" ref_strand="+" ref_description="SGN-E331024 [cTOD-6-G7]">
      <seq>gcctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="49352" stop="51798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49652" g_stop="49709" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49710" i_stop="50531" i_length="822">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50532" g_stop="50609" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="136" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="317" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="415" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51329" g_stop="51498" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="585" r_length="170" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E331024" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49652" e_stop="49709"/>
          <exon e_start="50532" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="51498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTCTGTTAATTCATCTCGTCAATGTTGTTTAGATTGTTATTTGGTGCCTGATAGATCAGTTGTATTTTAGTCTTATTGGCTTTTTTTCCAGGTCTACACTGTATGTATCAGTTATACCTTTGCTAATTGTTTGCTATATGTGTAATACATCTGATATTATATTCTTGGTTGTTCCGTTCGATTTATGCTCTCAATCGTATCTGTTGATCTCAAGTGGTGCTGGTTAATATCGTATGTGTAAGTAATCAATTGCATTTAGTTACTGTCGCCACTGGATATTAGTGTATACAGTTTTTTATAATTGTATTTTGCTTTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATTCTATTGGATTGTTTTAATGAATACAACATTTGGATAGATTTTATGGTTCTACAGATAGAGCTAAAATAAGATCATTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAAATCAGACAAAATGGTCGCTACACAAAGTGAGACCGATACCTAACTGTTATTTTAATGATAGCTTAAGATTTGCACAATGAAATTGTGTAGTATAGTTCAAGTTATTTACTCTATGTATTGAAAAATTTGTTCTGTACCTTTGCGAAAGAACATGCTTCTAATGTTGTTTGACATGGATAGATTTTAAAAGAACCTGTGGAACAGCTTCCCTTTATATTTTTGGTCAATTGATTTTTGTTCTAACTTCTATCAGCTTTCATTTATATTAAGTGGTAAAATTTTTGCATTTAGGCTGGAAACATCATACTAATGTGAATTTTGTAATTTCTTGTCTATATATAGGCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGT</genome_strand>
        <mrna_strand>GCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG..........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365881" ref_strand="+" ref_description="SGN-E365881 [cLPT-11-E12]">
      <seq>accactcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactgggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggattcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="49353" stop="51494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49652" g_stop="49709" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49710" i_stop="50531" i_length="822">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50532" g_stop="50609" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="136" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="317" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51141" g_stop="51194" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="371" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E365881" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49652" e_stop="49709"/>
          <exon e_start="50532" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTCTGTTAATTCATCTCGTCAATGTTGTTTAGATTGTTATTTGGTGCCTGATAGATCAGTTGTATTTTAGTCTTATTGGCTTTTTTTCCAGGTCTACACTGTATGTATCAGTTATACCTTTGCTAATTGTTTGCTATATGTGTAATACATCTGATATTATATTCTTGGTTGTTCCGTTCGATTTATGCTCTCAATCGTATCTGTTGATCTCAAGTGGTGCTGGTTAATATCGTATGTGTAAGTAATCAATTGCATTTAGTTACTGTCGCCACTGGATATTAGTGTATACAGTTTTTTATAATTGTATTTTGCTTTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATTCTATTGGATTGTTTTAATGAATACAACATTTGGATAGATTTTATGGTTCTACAGATAGAGCTAAAATAAGATCATTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAAATCAGACAAAATGGTCGCTACACAAAGTGAGACCGATACCTAACTGTTATTTTAATGATAGCTTAAGATTTGCACAATGAAATTGTGTAGTATAGTTCAAGTTATTTACTCTATGTATTGAAAAATTTGTTCTGTACCTTTGCGAAAGAACATGCTTCTAATGTTGTTTGACATGGATAGATTTTAAAAGAACCTGTGGAACAGCTTCCCTTTATATTTTTGGTCAATTGATTTTTGTTCTAACTTCTATCAGCTTTCATTTATATTAAGTGGTAAAATTTTTGCATTTAGGCTGGAAACATCATACTAATGTGAATTTTGTAATTTCTTGTCTATATATAGGCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTA</genome_strand>
        <mrna_strand>ACCACTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTGGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGATTCATGG................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317253" ref_strand="+" ref_description="SGN-E317253 [cTOA-28-F17]">
      <seq>cctctcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="49353" stop="51805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49653" g_stop="49709" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49710" i_stop="50531" i_length="822">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50532" g_stop="50609" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="135" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="316" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="414" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51329" g_stop="51505" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="591" r_length="177" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E317253" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49653" e_stop="49709"/>
          <exon e_start="50532" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="51505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTCTGTTAATTCATCTCGTCAATGTTGTTTAGATTGTTATTTGGTGCCTGATAGATCAGTTGTATTTTAGTCTTATTGGCTTTTTTTCCAGGTCTACACTGTATGTATCAGTTATACCTTTGCTAATTGTTTGCTATATGTGTAATACATCTGATATTATATTCTTGGTTGTTCCGTTCGATTTATGCTCTCAATCGTATCTGTTGATCTCAAGTGGTGCTGGTTAATATCGTATGTGTAAGTAATCAATTGCATTTAGTTACTGTCGCCACTGGATATTAGTGTATACAGTTTTTTATAATTGTATTTTGCTTTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATTCTATTGGATTGTTTTAATGAATACAACATTTGGATAGATTTTATGGTTCTACAGATAGAGCTAAAATAAGATCATTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAAATCAGACAAAATGGTCGCTACACAAAGTGAGACCGATACCTAACTGTTATTTTAATGATAGCTTAAGATTTGCACAATGAAATTGTGTAGTATAGTTCAAGTTATTTACTCTATGTATTGAAAAATTTGTTCTGTACCTTTGCGAAAGAACATGCTTCTAATGTTGTTTGACATGGATAGATTTTAAAAGAACCTGTGGAACAGCTTCCCTTTATATTTTTGGTCAATTGATTTTTGTTCTAACTTCTATCAGCTTTCATTTATATTAAGTGGTAAAATTTTTGCATTTAGGCTGGAAACATCATACTAATGTGAATTTTGTAATTTCTTGTCTATATATAGGCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAAT</genome_strand>
        <mrna_strand>CCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG..........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E553879" ref_strand="+" ref_description="SGN-E553879 [cTSC-2-I16]">
      <seq>cgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattctaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaataggttgcgctatttttctctttgtttaaaggggtgccactcttatttttggggttgcaattcaacatcctatggactcggaatggttttacatacctttttttgtcagaaaaaacaatgactgaattaaaacaatcagtggcctttttagggaaggaattccatggaaaaatttaaggactaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="49358" stop="52280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49658" g_stop="49709" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49710" i_stop="50531" i_length="822">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50532" g_stop="50609" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="130" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="311" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="409" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51329" g_stop="51986" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="1062" r_length="653" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E553879" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>1067</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49658" e_stop="49709"/>
          <exon e_start="50532" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="51986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTCTGTTAATTCATCTCGTCAATGTTGTTTAGATTGTTATTTGGTGCCTGATAGATCAGTTGTATTTTAGTCTTATTGGCTTTTTTTCCAGGTCTACACTGTATGTATCAGTTATACCTTTGCTAATTGTTTGCTATATGTGTAATACATCTGATATTATATTCTTGGTTGTTCCGTTCGATTTATGCTCTCAATCGTATCTGTTGATCTCAAGTGGTGCTGGTTAATATCGTATGTGTAAGTAATCAATTGCATTTAGTTACTGTCGCCACTGGATATTAGTGTATACAGTTTTTTATAATTGTATTTTGCTTTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATTCTATTGGATTGTTTTAATGAATACAACATTTGGATAGATTTTATGGTTCTACAGATAGAGCTAAAATAAGATCATTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAAATCAGACAAAATGGTCGCTACACAAAGTGAGACCGATACCTAACTGTTATTTTAATGATAGCTTAAGATTTGCACAATGAAATTGTGTAGTATAGTTCAAGTTATTTACTCTATGTATTGAAAAATTTGTTCTGTACCTTTGCGAAAGAACATGCTTCTAATGTTGTTTGACATGGATAGATTTTAAAAGAACCTGTGGAACAGCTTCCCTTTATATTTTTGGTCAATTGATTTTTGTTCTAACTTCTATCAGCTTTCATTTATATTAAGTGGTAAAATTTTTGCATTTAGGCTGGAAACATCATACTAATGTGAATTTTGTAATTTCTTGTCTATATATAGGCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCACCTCTTATTTTTGGTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCTTTTTTTGTCAGGAAAAAACAATGACTGAGTTTAGACCAATCAGTTGCCTTTTTATGTGATGGTATTTCATTGTAAGAGTTTAAGGACCTTGTC</genome_strand>
        <mrna_strand>CGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG..........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCTAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAAAGGGGTGCCA-CTCTTATTTTTGGGGTTGCAATTCAACATCCTATGGACTCGGAATGGTTTTACATACCTTTTTTTGTCA-GAAAAAACAATGACTGA-ATTAAAACAATCAGTGGCCTTTTTA-GGGAAGGAATTCCA-TGGAAAAATTTAAGGACTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E553834" ref_strand="+" ref_description="SGN-E553834 [cTSC-2-G10]">
      <seq>tggatcccccgggctgcaggcgccggtagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattctaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtgtctctacctaaaggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaattttataggttgcgctatttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="49358" stop="52111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49658" g_stop="49709" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="72" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49710" i_stop="50531" i_length="822">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50532" g_stop="50609" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="150" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="331" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="429" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51329" g_stop="51812" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="913" r_length="484" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E553834" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>893</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49658" e_stop="49709"/>
          <exon e_start="50532" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="51812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTCTGTTAATTCATCTCGTCAATGTTGTTTAGATTGTTATTTGGTGCCTGATAGATCAGTTGTATTTTAGTCTTATTGGCTTTTTTTCCAGGTCTACACTGTATGTATCAGTTATACCTTTGCTAATTGTTTGCTATATGTGTAATACATCTGATATTATATTCTTGGTTGTTCCGTTCGATTTATGCTCTCAATCGTATCTGTTGATCTCAAGTGGTGCTGGTTAATATCGTATGTGTAAGTAATCAATTGCATTTAGTTACTGTCGCCACTGGATATTAGTGTATACAGTTTTTTATAATTGTATTTTGCTTTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATTCTATTGGATTGTTTTAATGAATACAACATTTGGATAGATTTTATGGTTCTACAGATAGAGCTAAAATAAGATCATTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAAATCAGACAAAATGGTCGCTACACAAAGTGAGACCGATACCTAACTGTTATTTTAATGATAGCTTAAGATTTGCACAATGAAATTGTGTAGTATAGTTCAAGTTATTTACTCTATGTATTGAAAAATTTGTTCTGTACCTTTGCGAAAGAACATGCTTCTAATGTTGTTTGACATGGATAGATTTTAAAAGAACCTGTGGAACAGCTTCCCTTTATATTTTTGGTCAATTGATTTTTGTTCTAACTTCTATCAGCTTTCATTTATATTAAGTGGTAAAATTTTTGCATTTAGGCTGGAAACATCATACTAATGTGAATTTTGTAATTTCTTGTCTATATATAGGCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTC</genome_strand>
        <mrna_strand>CGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG..........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCTAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACCTAAAGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTTATAGGTTGCGCTATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E271507" ref_strand="+" ref_description="SGN-E271507 [cLEM-23-G11]">
      <seq>gtagacgtcactctcggcagctaatctgtcggaaaatcgcccaaatgagccaagagggttgaagaaacatttaaagaggcctcaatgccgccctaagcattggatgccttgataaacctcggaggtgccttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaaccaggttgaaatatgccgttgaccgtacccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggaccgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctaccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="49363" stop="51806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49663" g_stop="49709" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49710" i_stop="50529" i_length="820">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50530" g_stop="50609" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="133" r_length="86" r_score="0.825"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="0.76"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="318" r_length="185" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="418" r_length="100" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51329" g_stop="51506" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="596" r_length="178" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E271507" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49663" e_stop="49709"/>
          <exon e_start="50530" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="51506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTCTGTTAATTCATCTCGTCAATGTTGTTTAGATTGTTATTTGGTGCCTGATAGATCAGTTGTATTTTAGTCTTATTGGCTTTTTTTCCAGGTCTACACTGTATGTATCAGTTATACCTTTGCTAATTGTTTGCTATATGTGTAATACATCTGATATTATATTCTTGGTTGTTCCGTTCGATTTATGCTCTCAATCGTATCTGTTGATCTCAAGTGGTGCTGGTTAATATCGTATGTGTAAGTAATCAATTGCATTTAGTTACTGTCGCCACTGGATATTAGTGTATACAGTTTTTTATAATTGTATTTTGCTTTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATTCTATTGGATTGTTTTAATGAATACAACATTTGGATAGATTTTATGGTTCTACAGATAGAGCTAAAATAAGATCATTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAAATCAGACAAAATGGTCGCTACACAAAGTGAGACCGATACCTAACTGTTATTTTAATGATAGCTTAAGATTTGCACAATGAAATTGTGTAGTATAGTTCAAGTTATTTACTCTATGTATTGAAAAATTTGTTCTGTACCTTTGCGAAAGAACATGCTTCTAATGTTGTTTGACATGGATAGATTTTAAAAGAACCTGTGGAACAGCTTCCCTTTATATTTTTGGTCAATTGATTTTTGTTCTAACTTCTATCAGCTTTCATTTATATTAAGTGGTAAAATTTTTGCATTTAGGCTGGAAACATCATACTAATGTGAATTTTGTAATTTCTTGTCTATATATAGGCAAGAGGGTTGAAGAAACATTTAAAGAGG-CTCAATG-CG-CCTAAGCATTGGATG-CTTGATAAA-CTTGGAGGTG-CTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAA-CAGGTTGAAATATG-CGTTGA-CGTA-CCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGA-CGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTA-CACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATG</genome_strand>
        <mrna_strand>GTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAATCGCCCAAATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCAAGAGGGTTGAAGAAACATTTAAAGAGGCCTCAATGCCGCCCTAAGCATTGGATGCCTTGATAAACCTCGGAGGTGCCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACCAGGTTGAAATATGCCGTTGACCGTACCCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ACCGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACCACTCACTCAGAGATGAGGAAGCCAAG..........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319911" ref_strand="+" ref_description="SGN-E319911 [cTOB-12-L17]">
      <seq>tagacgtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="49364" stop="51757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49664" g_stop="49709" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49710" i_stop="50531" i_length="822">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50532" g_stop="50609" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="124" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="305" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="403" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51329" g_stop="51457" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="532" r_length="129" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E319911" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49664" e_stop="49709"/>
          <exon e_start="50532" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="51457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTCTGTTAATTCATCTCGTCAATGTTGTTTAGATTGTTATTTGGTGCCTGATAGATCAGTTGTATTTTAGTCTTATTGGCTTTTTTTCCAGGTCTACACTGTATGTATCAGTTATACCTTTGCTAATTGTTTGCTATATGTGTAATACATCTGATATTATATTCTTGGTTGTTCCGTTCGATTTATGCTCTCAATCGTATCTGTTGATCTCAAGTGGTGCTGGTTAATATCGTATGTGTAAGTAATCAATTGCATTTAGTTACTGTCGCCACTGGATATTAGTGTATACAGTTTTTTATAATTGTATTTTGCTTTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATTCTATTGGATTGTTTTAATGAATACAACATTTGGATAGATTTTATGGTTCTACAGATAGAGCTAAAATAAGATCATTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAAATCAGACAAAATGGTCGCTACACAAAGTGAGACCGATACCTAACTGTTATTTTAATGATAGCTTAAGATTTGCACAATGAAATTGTGTAGTATAGTTCAAGTTATTTACTCTATGTATTGAAAAATTTGTTCTGTACCTTTGCGAAAGAACATGCTTCTAATGTTGTTTGACATGGATAGATTTTAAAAGAACCTGTGGAACAGCTTCCCTTTATATTTTTGGTCAATTGATTTTTGTTCTAACTTCTATCAGCTTTCATTTATATTAAGTGGTAAAATTTTTGCATTTAGGCTGGAAACATCATACTAATGTGAATTTTGTAATTTCTTGTCTATATATAGGCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGAC</genome_strand>
        <mrna_strand>TAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG..........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E554506" ref_strand="+" ref_description="SGN-E554506 [cTSC-4-I16]">
      <seq>agacatgactctcggcagctaatcagtcggaaaaccgccaaaatggccagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactccgaagtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaaaggtcggttccgtctacactcactcagagatgaagaagccaagttctaactttgcaaggttcgatcactgcactttggacagaaggatatcccatatctcaacacgtatgatggaagaacaagccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattctaataagattgctgacttcatcaagtttgatgttggtaatgtggtcatggtgactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaagattccctggggtatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggcactaagccatgggtgtctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="49365" stop="51981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49665" g_stop="49709" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49710" i_stop="50531" i_length="822">
            <donor d_prob="0.999" d_score="0.93"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50532" g_stop="50609" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="123" r_length="78" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="0.94"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="304" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="402" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51329" g_stop="51681" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="755" r_length="353" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E554506" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49665" e_stop="49709"/>
          <exon e_start="50532" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="51681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTCTGTTAATTCATCTCGTCAATGTTGTTTAGATTGTTATTTGGTGCCTGATAGATCAGTTGTATTTTAGTCTTATTGGCTTTTTTTCCAGGTCTACACTGTATGTATCAGTTATACCTTTGCTAATTGTTTGCTATATGTGTAATACATCTGATATTATATTCTTGGTTGTTCCGTTCGATTTATGCTCTCAATCGTATCTGTTGATCTCAAGTGGTGCTGGTTAATATCGTATGTGTAAGTAATCAATTGCATTTAGTTACTGTCGCCACTGGATATTAGTGTATACAGTTTTTTATAATTGTATTTTGCTTTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATTCTATTGGATTGTTTTAATGAATACAACATTTGGATAGATTTTATGGTTCTACAGATAGAGCTAAAATAAGATCATTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAAATCAGACAAAATGGTCGCTACACAAAGTGAGACCGATACCTAACTGTTATTTTAATGATAGCTTAAGATTTGCACAATGAAATTGTGTAGTATAGTTCAAGTTATTTACTCTATGTATTGAAAAATTTGTTCTGTACCTTTGCGAAAGAACATGCTTCTAATGTTGTTTGACATGGATAGATTTTAAAAGAACCTGTGGAACAGCTTCCCTTTATATTTTTGGTCAATTGATTTTTGTTCTAACTTCTATCAGCTTTCATTTATATTAAGTGGTAAAATTTTTGCATTTAGGCTGGAAACATCATACTAATGTGAATTTTGTAATTTCTTGTCTATATATAGGCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCT</genome_strand>
        <mrna_strand>AGACATGACTCTCGGCAGCTAATCAGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCCGAAGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAAGGTCGGTTCCGTCTACACTCACTCAGAGATGAAGAAGCCAAG..........................................................................................TTCTAACTTTGCAAGGTTCGATCACTGCACTTTGGACAGAAGGATATCCCATATCTCAACACGTATGATGGAAGAACAAGCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCTAATAAGATTGCTGACTTCATCAAGTTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGATTCCCTGGGGTATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGCACTAAGCCATGGGTGTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E439736" ref_strand="+" ref_description="SGN-E439736 [cSTA-13-I16]">
      <seq>cgaggctcgccggcagctattcaatcggaaaaccgccaaaatggcaagagggttgaagaaaccatttgaagaggctcaatgccgctctaagcattggatgccttgataaacttggaggtgcttttgctcccaagccttcatctggtccacacaaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttacgattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatctgtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="49366" stop="55301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49665" g_stop="49709" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.800"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49710" i_stop="50531" i_length="822">
            <donor d_prob="0.999" d_score="0.80"/>
            <acceptor a_prob="0.996" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50532" g_stop="50609" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="125" r_length="82" r_score="0.885"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="0.87"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="306" r_length="181" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="404" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51329" g_stop="51506" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="582" r_length="178" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E439736" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49665" e_stop="49709"/>
          <exon e_start="50532" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="51506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTCTGTTAATTCATCTCGTCAATGTTGTTTAGATTGTTATTTGGTGCCTGATAGATCAGTTGTATTTTAGTCTTATTGGCTTTTTTTCCAGGTCTACACTGTATGTATCAGTTATACCTTTGCTAATTGTTTGCTATATGTGTAATACATCTGATATTATATTCTTGGTTGTTCCGTTCGATTTATGCTCTCAATCGTATCTGTTGATCTCAAGTGGTGCTGGTTAATATCGTATGTGTAAGTAATCAATTGCATTTAGTTACTGTCGCCACTGGATATTAGTGTATACAGTTTTTTATAATTGTATTTTGCTTTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATTCTATTGGATTGTTTTAATGAATACAACATTTGGATAGATTTTATGGTTCTACAGATAGAGCTAAAATAAGATCATTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAAATCAGACAAAATGGTCGCTACACAAAGTGAGACCGATACCTAACTGTTATTTTAATGATAGCTTAAGATTTGCACAATGAAATTGTGTAGTATAGTTCAAGTTATTTACTCTATGTATTGAAAAATTTGTTCTGTACCTTTGCGAAAGAACATGCTTCTAATGTTGTTTGACATGGATAGATTTTAAAAGAACCTGTGGAACAGCTTCCCTTTATATTTTTGGTCAATTGATTTTTGTTCTAACTTCTATCAGCTTTCATTTATATTAAGTGGTAAAATTTTTGCATTTAGGCTGGAAACATCATACTAATGTGAATTTTGTAATTTCTTGTCTATATATAGGCAAGAGGGTTGAAGAAA-CATTTAAAGAGGCTCAATG-CGC-CTAAGCATTGGATG-CTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATG</genome_strand>
        <mrna_strand>CGA-GGCTCGC-CGGCAGCTATTCAATCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACCATTTGAAGAGGCTCAATGCCGCTCTAAGCATTGGATGCCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCATCTGGTCCACACAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG..........................................................................................TTCAAACTTTGCAAGGTTCGATCTGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342603" ref_strand="+" ref_description="SGN-E342603 [cTOF-7-G10]">
      <seq>gtcactctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacaggggacgtgtttgaattcttaagacagggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="49369" stop="51866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49669" g_stop="49709" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49710" i_stop="50531" i_length="822">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50532" g_stop="50609" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="119" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="300" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="398" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51329" g_stop="51566" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="635" r_length="237" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E342603" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49669" e_stop="49709"/>
          <exon e_start="50532" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="51566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTCTGTTAATTCATCTCGTCAATGTTGTTTAGATTGTTATTTGGTGCCTGATAGATCAGTTGTATTTTAGTCTTATTGGCTTTTTTTCCAGGTCTACACTGTATGTATCAGTTATACCTTTGCTAATTGTTTGCTATATGTGTAATACATCTGATATTATATTCTTGGTTGTTCCGTTCGATTTATGCTCTCAATCGTATCTGTTGATCTCAAGTGGTGCTGGTTAATATCGTATGTGTAAGTAATCAATTGCATTTAGTTACTGTCGCCACTGGATATTAGTGTATACAGTTTTTTATAATTGTATTTTGCTTTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATTCTATTGGATTGTTTTAATGAATACAACATTTGGATAGATTTTATGGTTCTACAGATAGAGCTAAAATAAGATCATTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAAATCAGACAAAATGGTCGCTACACAAAGTGAGACCGATACCTAACTGTTATTTTAATGATAGCTTAAGATTTGCACAATGAAATTGTGTAGTATAGTTCAAGTTATTTACTCTATGTATTGAAAAATTTGTTCTGTACCTTTGCGAAAGAACATGCTTCTAATGTTGTTTGACATGGATAGATTTTAAAAGAACCTGTGGAACAGCTTCCCTTTATATTTTTGGTCAATTGATTTTTGTTCTAACTTCTATCAGCTTTCATTTATATTAAGTGGTAAAATTTTTGCATTTAGGCTGGAAACATCATACTAATGTGAATTTTGTAATTTCTTGTCTATATATAGGCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGA</genome_strand>
        <mrna_strand>GTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG..........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTTGAATTCTTAAG-ACAGGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341670" ref_strand="+" ref_description="SGN-E341670 [cTOE-23-N4]">
      <seq>ctctcggcagctaatctgtcggaaaaccgccaaaatggcaagagggttgaagaaacatttaaagaggctcaatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="49373" stop="51806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49673" g_stop="49709" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49710" i_stop="50531" i_length="822">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50532" g_stop="50609" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="115" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="296" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="394" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51329" g_stop="51506" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="572" r_length="178" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E341670" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49673" e_stop="49709"/>
          <exon e_start="50532" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="51506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTCTGTTAATTCATCTCGTCAATGTTGTTTAGATTGTTATTTGGTGCCTGATAGATCAGTTGTATTTTAGTCTTATTGGCTTTTTTTCCAGGTCTACACTGTATGTATCAGTTATACCTTTGCTAATTGTTTGCTATATGTGTAATACATCTGATATTATATTCTTGGTTGTTCCGTTCGATTTATGCTCTCAATCGTATCTGTTGATCTCAAGTGGTGCTGGTTAATATCGTATGTGTAAGTAATCAATTGCATTTAGTTACTGTCGCCACTGGATATTAGTGTATACAGTTTTTTATAATTGTATTTTGCTTTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATTCTATTGGATTGTTTTAATGAATACAACATTTGGATAGATTTTATGGTTCTACAGATAGAGCTAAAATAAGATCATTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAAATCAGACAAAATGGTCGCTACACAAAGTGAGACCGATACCTAACTGTTATTTTAATGATAGCTTAAGATTTGCACAATGAAATTGTGTAGTATAGTTCAAGTTATTTACTCTATGTATTGAAAAATTTGTTCTGTACCTTTGCGAAAGAACATGCTTCTAATGTTGTTTGACATGGATAGATTTTAAAAGAACCTGTGGAACAGCTTCCCTTTATATTTTTGGTCAATTGATTTTTGTTCTAACTTCTATCAGCTTTCATTTATATTAAGTGGTAAAATTTTTGCATTTAGGCTGGAAACATCATACTAATGTGAATTTTGTAATTTCTTGTCTATATATAGGCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATG</genome_strand>
        <mrna_strand>CTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG..........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E452141" ref_strand="+" ref_description="SGN-E452141 [cSTS-15-F4]">
      <seq>ggcagctattcaatcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacacaaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacttaccctgctggtttcatggatgttgttacgattccaaagacgaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatctgtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactgggtggtagaaacagggggcgtgttggaattcttaagaacagagagaagcacaagggtagctttgagacagttcacattcaggattccctgnggcatgagtttgctacccgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="46368" stop="55428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49678" g_stop="49709" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49710" i_stop="50531" i_length="822">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50532" g_stop="50609" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="110" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="291" r_length="181" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="389" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51329" g_stop="51633" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="695" r_length="306" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E452141" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49678" e_stop="49709"/>
          <exon e_start="50532" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="51633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGCTAATCTGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTCTGTTAATTCATCTCGTCAATGTTGTTTAGATTGTTATTTGGTGCCTGATAGATCAGTTGTATTTTAGTCTTATTGGCTTTTTTTCCAGGTCTACACTGTATGTATCAGTTATACCTTTGCTAATTGTTTGCTATATGTGTAATACATCTGATATTATATTCTTGGTTGTTCCGTTCGATTTATGCTCTCAATCGTATCTGTTGATCTCAAGTGGTGCTGGTTAATATCGTATGTGTAAGTAATCAATTGCATTTAGTTACTGTCGCCACTGGATATTAGTGTATACAGTTTTTTATAATTGTATTTTGCTTTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATTCTATTGGATTGTTTTAATGAATACAACATTTGGATAGATTTTATGGTTCTACAGATAGAGCTAAAATAAGATCATTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAAATCAGACAAAATGGTCGCTACACAAAGTGAGACCGATACCTAACTGTTATTTTAATGATAGCTTAAGATTTGCACAATGAAATTGTGTAGTATAGTTCAAGTTATTTACTCTATGTATTGAAAAATTTGTTCTGTACCTTTGCGAAAGAACATGCTTCTAATGTTGTTTGACATGGATAGATTTTAAAAGAACCTGTGGAACAGCTTCCCTTTATATTTTTGGTCAATTGATTTTTGTTCTAACTTCTATCAGCTTTCATTTATATTAAGTGGTAAAATTTTTGCATTTAGGCTGGAAACATCATACTAATGTGAATTTTGTAATTTCTTGTCTATATATAGGCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACT-GGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTT</genome_strand>
        <mrna_strand>GGCAGCTATTCAATCGGAAAACCGCCAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCAAAGACGAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG..........................................................................................TTCAAACTTTGCAAGGTTCGATCTGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAACAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGNGGCATGAGTTTGCTACCCGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270181" ref_strand="+" ref_description="SGN-E270181 [cLEM-1-G15]">
      <seq>gcaaaatggctttagggttgaagaaacatttaaagaggctcagatgcgcctaagcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="50237" stop="51731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50532" g_stop="50609" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="87" r_length="79" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="0.94"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="268" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="366" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51329" g_stop="51431" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="469" r_length="103" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E270181" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270181" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50532" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="51431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCA-ATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCA</genome_strand>
        <mrna_strand>GCTTTAGGGTTGAAGAAACATTTAAAGAGGCTCAGATGCGCCTAAGCATTGGATGCTTGATAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG..........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738580" ref_strand="+" ref_description="SGN-E738580 [LC14AG10]">
      <seq>cgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtctctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctncatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaataggttgcgctatttttctctttgtttagagggttgccacctcttatttttggtgttgcattttcacatcctatgtactcggtattgttttacatacctttttttgtcaggaaaaaacaatgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43295" stop="52220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50569" g_stop="50609" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="222" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="320" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51329" g_stop="51920" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="912" r_length="592" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E738580" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>912</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50569" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="51920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCACCTCTTATTTTTGGTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCTTTTTTTGTCAGGAAAAAACAATGACTG</genome_strand>
        <mrna_strand>CGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG..........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTNCATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCACCTCTTATTTTTGGTGTTGCATTTTCACATCCTATGTACTCGGTATTGTTTTACATACCTTTTTTTGTCAGGAAAAAACAATGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735390" ref_strand="+" ref_description="SGN-E735390 [LC01BE09]">
      <seq>cgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtctctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaataggttgcgctatttttctctttgtttaaaggggtgccacctcttatttttggtgttgcatttcaacatcttatgtactcggaattgttttacataccttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43295" stop="52197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50569" g_stop="50609" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="222" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="320" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51329" g_stop="51897" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="889" r_length="569" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E735390" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>889</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50569" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="51897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCACCTCTTATTTTTGGTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCTTTTT</genome_strand>
        <mrna_strand>CGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG..........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAAAGGGGTGCCACCTCTTATTTTTGGTGTTGCATTTCAACATCTTATGTACTCGGAATTGTTTTACATACCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735851" ref_strand="+" ref_description="SGN-E735851 [LC03BE09]">
      <seq>ctcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtctctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcaactacaactgcttaaaaatgataggttgaacttgaaatgaatttaatacgttgcgctatttttctctttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43295" stop="52121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50569" g_stop="50609" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="222" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="320" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51329" g_stop="51821" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="813" r_length="493" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E735851" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50569" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="51821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTT</genome_strand>
        <mrna_strand>CTCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG..........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAACTACAACTGCTTAAAAATGATAGGTTGAACTTGAAATGAATTTAATACGTTGCGCTATTTTTCTCTTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735391" ref_strand="+" ref_description="SGN-E735391 [LC01BE10]">
      <seq>cgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtctctctacctaanggtaaaggtatcaagttatctatcattgaagaggctcgcaagaagatggctgctcaatcagctacaactgcttaaaatgataggttgaacttgagatgaatttaataggttgccctattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43295" stop="52109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50569" g_stop="50609" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="222" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="320" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51329" g_stop="51809" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="800" r_length="480" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E735391" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50569" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="51809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTT</genome_strand>
        <mrna_strand>CGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG..........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAANGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAAGATGGCTGCTCAATCAGCTACAACTGCTT-AAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCCCTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E246594" ref_strand="+" ref_description="SGN-E246594 [cLEF-45-D2]">
      <seq>taaactcggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcaaagatgatgaaaccaacttcaaactttgcaaggatcgatcagtgcatttaggacagaagggtattccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="50404" stop="51803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50591" g_stop="50609" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94">
            <donor d_prob="0.984" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50704" g_stop="50884" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="200" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="298" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="0.92"/>
            <acceptor a_prob="0.968" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51329" g_stop="51503" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="473" r_length="175" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E246594" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50591" e_stop="50609"/>
          <exon e_start="50704" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="51503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTTAAGTCTTTTTCTTAATAGTACTCGTAGTTCCCTGCTTCTTGACTTCACTGCTCTCTTTGGTCTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTA</genome_strand>
        <mrna_strand>TAAACTCGGAGGTGCTTTT..............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAAAGATGATGAAACCAAC..........................................................................................TTCAAACTTTGCAAGGATCGATCAGTGCATTTAGGACAGAAGGGTATTCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E556357" ref_strand="+" ref_description="SGN-E556357 [cTSD-3-D3]">
      <seq>gtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaataggttgcgctatttttctctttgtttagagggttgccactcttatttttggtgttgcatttcaacatcctatgtactcggtattgttttacatacctttttttgtcaggaaaaaacaatgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="50423" stop="52220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50723" g_stop="50884" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="260" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51329" g_stop="51920" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="851" r_length="591" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E556357" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50723" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="51920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCACCTCTTATTTTTGGTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCTTTTTTTGTCAGGAAAAAACAATGACTG</genome_strand>
        <mrna_strand>GTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG..........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCA-CTCTTATTTTTGGTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCTTTTTTTGTCAGGAAAAAACAATGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725403" ref_strand="+" ref_description="SGN-E725403 [FC26DH12]">
      <seq>agggaatgtttgccattggttattatccttagaagcaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggacgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccccgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtctctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaataggttgcgctatttttctctttgtttagagggttgccacctcttatttttggtgttgcatttcaacatcctatgtactcggtattgttttacatacccttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="50437" stop="52199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50737" g_stop="50884" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="246" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51329" g_stop="51900" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="818" r_length="572" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E725403" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50737" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="51900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCACCTCTTATTTTTGGTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCTTTTTTTG</genome_strand>
        <mrna_strand>AGGGAATGTTTGCCATTGGTTATTATCCTTAGAAGCAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG..........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCACCTCTTATTTTTGGTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCCTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E405824" ref_strand="+" ref_description="SGN-E405824 [PPI-1-B2]">
      <seq>gtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacttaccctgctggtttcatggatgttgttacgattccaaagacgaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatctgtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaacagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatggggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctactcaatcagctacaactgcgtaaaatgataggttgaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43470" stop="52082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50744" g_stop="50884" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="239" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51329" g_stop="51782" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="693" r_length="454" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E405824" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E405824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50744" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="51782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCAT-GGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTG</genome_strand>
        <mrna_strand>GTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCAAAGACGAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG..........................................................................................TTCAAACTTTGCAAGGTTCGATCTGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAACAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTACTCAATCAGCTACAACTGCGT-AAAATGATAGGTTGAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E558364" ref_strand="+" ref_description="SGN-E558364 [17692]">
      <seq>atcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgtaatgattccgaagactaatgagagcttccgacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43487" stop="54983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50761" g_stop="50884" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.984" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51141" g_stop="51182" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="166" r_length="42" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E558364" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>166</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50761" e_stop="50884"/>
          <exon e_start="51141" e_stop="51182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTC</genome_strand>
        <mrna_strand>ATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG................................................................................................................................................................................................................................................................ATGTTGTAATGATTCCGAAGACTAATGAGAGCTTCCGACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E465780" ref_strand="+" ref_description="SGN-E465780 [cPRO-22-A12]">
      <seq>agggtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgttacgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactaagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccgtgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctactcaatcagcgacaactgcttaaaaatgatanggtgaacttgagatgaattttatagattgggccatgtttctcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43524" stop="52117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50795" g_stop="50884" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.984" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51141" g_stop="51238" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="188" r_length="98" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51329" g_stop="51817" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="677" r_length="489" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E465780" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E465780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50795" e_stop="50884"/>
          <exon e_start="51141" e_stop="51238"/>
          <exon e_start="51329" e_stop="51817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGCACACCTCCATTAGAGTGTTTTTCATTTCAAAACCTTTATACTTATGTTTTCCTTATTTCTGTACTGCCTATGTTTGTAGTCTTACTGATTCATTTATATACACACGCTTTGACAGTTCCAAAGACAATTGTTGTTGAGAGTGTCTTCAAGCTTTTTTAATCAAAAATCATTTTTTAGTGTCTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTGTTATTTTCTCTGTGTAGACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTT</genome_strand>
        <mrna_strand>AGGGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTAAGAGATGAGGAAGCCAAG..........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCGTGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTACTCAATCAGCGACAACTGCTTAAAAATGATANGGTGAACTTGAGATGAATTTTATAGATTGGGCCATGTTTCTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E260393" ref_strand="+" ref_description="SGN-E260393 [cLEG-66-I7]">
      <seq>gagaactaggagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="50860" stop="51798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51160" g_stop="51238" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51329" g_stop="51498" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="249" r_length="170" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E260393" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>249</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51160" e_stop="51238"/>
          <exon e_start="51329" e_stop="51498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGT</genome_strand>
        <mrna_strand>GAGAACTAGGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG..........................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E251542" ref_strand="+" ref_description="SGN-E251542 [cLEG-9-C18]">
      <seq>actttgcaaggttcgatcagtgcagtttggacagaagggtatcccatatctcaacacgtatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaataggttgcgctatttttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="51034" stop="52115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51334" g_stop="51815" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E251542" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51334" e_stop="51815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCT</genome_strand>
        <mrna_strand>ACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333583" ref_strand="-" ref_description="SGN-E333583 [cTOD-22-I24]">
      <seq>ttgcaaggttcgatcagtgcagttggacagaaggntatcccatatctcaacacgtatgatggaagancaatccgctaccctgatcccntcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaataggttgcgctatttttctctttgtttagagggttgccactcttatttttggtgttgcatttcaacatcctatgtactcggtattgttttacatacctttttttgtcaggaaaaaacaatgactgagtttagaccaatcagttgcctttttatgtgatggtatttcattgtaagagtttaaggaccttgtcgatgagtttattcacttgtttcaaaatgagtttttggttgtaatatcttcaaatccaacctgctgttgtattccaaagttggtgtagttcactaaacctgattcgtaatttcattttcataaacttcaaaaaaaaaaaaaaaaaaactcgagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="51037" stop="52416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51337" g_stop="52115" g_length="779"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="777" r_length="777" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="778" polyA_stop="795"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E333583" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333583" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="51337" e_stop="52115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCACCTCTTATTTTTGGTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCTTTTTTTGTCAGGAAAAAACAATGACTGAGTTTAGACCAATCAGTTGCCTTTTTATGTGATGGTATTTCATTGTAAGAGTTTAAGGACCTTGTCGATGAGTTTATTCACTTGTTTCAAAATGAGTTTTTGGTTGTAATATCTTCAAATCCAACCTGCTGTTGTATTCCAAAGTTGGTGTAGTTCACTAAACCTGATTCGTAATTTCATTTTCATAAACTTCAA</genome_strand>
        <mrna_strand>TTGCAAGGTTCGATCAGTGCAG-TTGGACAGAAGGNTATCCCATATCTCAACACGTATGATGGAAGANCAATCCGCTACCCTGATCCCNTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCA-CTCTTATTTTTGGTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCTTTTTTTGTCAGGAAAAAACAATGACTGAGTTTAGACCAATCAGTTGCCTTTTTATGTGATGGTATTTCATTGTAAGAGTTTAAGGACCTTGTCGATGAGTTTATTCACTTGTTTCAAAATGAGTTTTTGGTTGTAATATCTTCAAATCCAACCTGCTGTTGTATTCCAAAGTTGGTGTAGTTCACTAAACCTGATTCGTAATTTCATTTTCATAAACTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E610143" ref_strand="+" ref_description="SGN-E610143 [57297]">
      <seq>atcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaacagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctactcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaatagattgggccatgtttctctttgtttagagggatgccattcttattttgtgtgttgcatttcaacatctgtgtactcggtactgatttacttacctttttttgtcgggaaaaaaggtagactgagttgagatcaatcagttgccttttatgtgatagtattttattgcgacagagtttaaggaccttgtccattagcctattcacttatttcaaaatgagtttttggttgtaatattttcaaatctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="51128" stop="52344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51428" g_stop="52025" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="615" polyA_stop="627"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E610143" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E610143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51428" e_stop="52025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCACCTCTTATTTTTGGTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCTTTTTTTGTCAGGAAAAAACAATGACTGAGTTTAGACCAATCAGTTGCCTTTTTATGTGATGGTATTTCATTG-TA-AGAGTTTAAGGACCTTGTCGATGAGTTTATTCACTTGTTTCAAAATGAGTTTTTGGTT</genome_strand>
        <mrna_strand>ATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAACAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTACTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGATTGGGCCATGTTTCTCTTTGTTTAGAGGGATGCCA-TTCTTATTTTGTGTGTTGCATTTCAACAT-CTGTGTACTCGGTACTGATTTACTTACCTTTTTTTGTCGGGAAAAAAGGTAGACTGAGTTGAGATCAATCAGTTGCC-TTTTATGTGATAGTATTTTATTGCGACAGAGTTTAAGGACCTTGTCCATTAGCCTATTCACTTATTTCAAAATGAGTTTTTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E391883" ref_strand="+" ref_description="SGN-E391883 [TUS-24-K15](-)">
      <seq>caccatcaagctggatttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggtgactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaataggttgcgctatttttctctttgtttagagggttgccactcttatttttggtgttgcatttcaacatcctatgtactcggtattgttttacataccttttttttgtcaggaaaaaacaatgactgagtttagaccaatcagttgcctttttatgtgatggtatttcattgtaagagtttaaggaccttgtcgatgagtttattcacttgtttcaaaatgagtttttggttgtaatatcttcaaatccaacctgctgttgtattccaaagttggtgtagttcactaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="51142" stop="52382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51442" g_stop="52090" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E391883" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51442" e_stop="52090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCACCTCTTATTTTTGGTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACC-TTTTTTTGTCAGGAAAAAACAATGACTGAGTTTAGACCAATCAGTTGCCTTTTTATGTGATGGTATTTCATTGTAAGAGTTTAAGGACCTTGTCGATGAGTTTATTCACTTGTTTCAAAATGAGTTTTTGGTTGTAATATCTTCAAATCCAACCTGCTGTTGTATTCCAAAGTTGGTGTAGTTCACTAAACCTGATTC</genome_strand>
        <mrna_strand>CACCATCAAGCTGGATTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCA-CTCTTATTTTTGGTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCTTTTTTTTGTCAGGAAAAAACAATGACTGAGTTTAGACCAATCAGTTGCCTTTTTATGTGATGGTATTTCATTGTAAGAGTTTAAGGACCTTGTCGATGAGTTTATTCACTTGTTTCAAAATGAGTTTTTGGTTGTAATATCTTCAAATCCAACCTGCTGTTGTATTCCAAAGTTGGTGTAGTTCACTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E234686" ref_strand="+" ref_description="SGN-E234686 [cLEL-6-B6](-)">
      <seq>cgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaataggttgcgctatttttctctttgtttagagggttgccactcttatttttggtgttgcatttcaacatcctatgtactcggtattgttttacataccttttttttgtcaggaaaaaacaatgactgagtttagaccaatcagttgcctttttatgtgatggtatttcattgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="51239" stop="52270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51539" g_stop="51964" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="428" polyA_stop="446"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E234686" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51539" e_stop="51964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCACCTCTTATTTTTGGTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACC-TTTTTTTGTCAGGAAAAAACAATGACTGAGTTTAGACCAATCAGTTGCCTTTTTATGTGATGGTATTTCATT</genome_strand>
        <mrna_strand>CGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCA-CTCTTATTTTTGGTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCTTTTTTTTGTCAGGAAAAAACAATGACTGAGTTTAGACCAATCAGTTGCCTTTTTATGTGATGGTATTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E234974" ref_strand="+" ref_description="SGN-E234974 [cLEL-6-B6](-)">
      <seq>gctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaataggttgcgctatttttctctttgtttagagggttgccactcttatttttggtgttgcatttcaacatcctatgtactcggtattgttttacataccttttttttgtcaggaaaaaacaatgactgagtttagaccaatcagttgcctttttatgtgatggtatttcattgtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="51279" stop="52270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51579" g_stop="51970" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="393" polyA_stop="406"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E234974" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51579" e_stop="51970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCACCTCTTATTTTTGGTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACC-TTTTTTTGTCAGGAAAAAACAATGACTGAGTTTAGACCAATCAGTTGCCTTTTTATGTGATGGTATTTCATTGTAAGA</genome_strand>
        <mrna_strand>GCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCA-CTCTTATTTTTGGTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCTTTTTTTTGTCAGGAAAAAACAATGACTGAGTTTAGACCAATCAGTTGCCTTTTTATGTGATGGTATTTCATTGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E541674" ref_strand="+" ref_description="SGN-E541674 [TUS-62-J11](-)">
      <seq>ttccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaataggttgcgctatttttctctttgtttagagggttgccactcttatttttggtgttgcatttcaacatcctatgtactcggtattgttttacatacctttttttgtcaggaaaaaacaatgactgagtttagaccaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="51304" stop="52232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51604" g_stop="51931" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="328" polyA_stop="339"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E541674" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51604" e_stop="51931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCACCTCTTATTTTTGGTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCTTTTTTTGTCAGGAAAAAACAATGACTGAGTTTAGACCA</genome_strand>
        <mrna_strand>TTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCA-CTCTTATTTTTGGTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCTTTTTTTGTCAGGAAAAAACAATGACTGAGTTTAGACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E541676" ref_strand="+" ref_description="SGN-E541676 [TUS-62-J11]">
      <seq>ttccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaataggttgcgctatttttctctttgtttagagggttgccactcttatttttggtgttgcatttcaacatcctatgtactcggtattgttttacatacctttttttgtcaggaaaaaacaatgactgagtttagaccaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="51304" stop="52232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51604" g_stop="51931" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="328" polyA_stop="339"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E541676" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51604" e_stop="51931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCACCTCTTATTTTTGGTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCTTTTTTTGTCAGGAAAAAACAATGACTGAGTTTAGACCA</genome_strand>
        <mrna_strand>TTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCA-CTCTTATTTTTGGTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCTTTTTTTGTCAGGAAAAAACAATGACTGAGTTTAGACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298668" ref_strand="+" ref_description="SGN-E298668 [cLET-44-M20]">
      <seq>tccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaataggttgcgctatttttctctttgtttagagggttgccactcttatttttggtgttgcatttcaacatcctatgtactcggtattgttttacatacctttttttgtcaggaaaaaacaatgactgagtttagaccaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="51305" stop="52232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51605" g_stop="51931" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="327" polyA_stop="338"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E298668" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51605" e_stop="51931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCACCTCTTATTTTTGGTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCTTTTTTTGTCAGGAAAAAACAATGACTGAGTTTAGACCA</genome_strand>
        <mrna_strand>TCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCA-CTCTTATTTTTGGTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCTTTTTTTGTCAGGAAAAAACAATGACTGAGTTTAGACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E219820" ref_strand="+" ref_description="SGN-E219820 [cLEL-24-A8](-)">
      <seq>ggcatgagtttgctacccgtttggaaatgtgttcactcttggtaaaggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaataggttgcgctatttttctctttgtttagagggttgccactcttatttttggtgttgcatttcaacatcctatgtactcggtattgttttacatacctttttttgtcaggaaaaaacaatgactgagtttagaccaatcagttgcctttttatgtgatggtatttcattgtaagagtttaaggaccttgtcgatgagtttattcacttgtttcaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="51312" stop="52312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51612" g_stop="52011" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="399" polyA_stop="414"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E219820" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51612" e_stop="52011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCACCTCTTATTTTTGGTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCTTTTTTTGTCAGGAAAAAACAATGACTGAGTTTAGACCAATCAGTTGCCTTTTTATGTGATGGTATTTCATTGTAAGAGTTTAAGGACCTTGTCGATGAGTTTATTCACTTGTTTCAAA</genome_strand>
        <mrna_strand>GGCATGAGTTTGCTACCCGTTT-GGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCA-CTCTTATTTTTGGTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCTTTTTTTGTCAGGAAAAAACAATGACTGAGTTTAGACCAATCAGTTGCCTTTTTATGTGATGGTATTTCATTGTAAGAGTTTAAGGACCTTGTCGATGAGTTTATTCACTTGTTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E219868" ref_strand="+" ref_description="SGN-E219868 [cLEL-24-A8](-)">
      <seq>aaatgtgttcactcttgtaaaggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaataggttgcgctatttttctctttgtttagagggttgccactcttatttttggtgttgcatttcaacatcctatgtactcggtattgttttacatacctttttttgtcaggaaaaaacaatgactgagtttagaccaatcagttgcctttttatgtgatggtatttcattgtaagagtttaaggaccttgtcgatgagtttattcncttgtttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="51337" stop="52312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51637" g_stop="52011" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="373" r_length="373" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="374" polyA_stop="387"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E219868" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51637" e_stop="52011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCACCTCTTATTTTTGGTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCTTTTTTTGTCAGGAAAAAACAATGACTGAGTTTAGACCAATCAGTTGCCTTTTTATGTGATGGTATTTCATTGTAAGAGTTTAAGGACCTTGTCGATGAGTTTATTCACTTGTTTCAAA</genome_strand>
        <mrna_strand>AAATGTGTTCACTCTTG-TAAAGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCA-CTCTTATTTTTGGTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCTTTTTTTGTCAGGAAAAAACAATGACTGAGTTTAGACCAATCAGTTGCCTTTTTATGTGATGGTATTTCATTGTAAGAGTTTAAGGACCTTGTCGATGAGTTTATTCNCTTGTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E717828" ref_strand="+" ref_description="SGN-E717828 [FC02DE02]">
      <seq>aatcggccgaattggaagagacacacctctcgccggttgccgtcactcgccgcagttaatcagtcgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52865" stop="55508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53163" g_stop="53235" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="82" r_length="73" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="160" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="341" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="439" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="55208" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="824" r_length="385" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E717828" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53163" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="55208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTGAAGAGACACACCTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTA</genome_strand>
        <mrna_strand>AATTGGAAGAGACACACCTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E724611" ref_strand="+" ref_description="SGN-E724611 [FC24CE11]">
      <seq>tgaagagacacacctctcgccggttgccgtcactcgccgcagttaatcagtcgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacaaataaaacttaccctgctggtttcatggatgttgttactattccaaagacaaatgaaagcttccgacttctttatgacactaagggtcggttccgcctccactcactcaaagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatgtaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52867" stop="55373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53167" g_stop="53235" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="147" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="328" r_length="181" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="426" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="55073" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="676" r_length="250" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E724611" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53167" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="55073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGAGACACACCTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTA</genome_strand>
        <mrna_strand>TGAAGAGACACACCTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAAATAAAACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAAAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAAAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGTAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E701005" ref_strand="+" ref_description="SGN-E701005 [FA14DA12]">
      <seq>aagagacacacctctcgccggttgccgtcactcgccgcagttaatcagtcgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtnaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctattattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaataatcatanggtgaaactgaagattatttaatagatttggtcattttctctttgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52869" stop="55616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53169" g_stop="53235" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="145" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="326" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="424" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="55316" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="916" r_length="492" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E701005" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>917</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53169" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="55316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGACACACCTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGAACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTT</genome_strand>
        <mrna_strand>AAGAGACACACCTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTNAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATANGGTGAAACTGAAGATTATTTAATAGATTTGGTCA-TTTTCTCTTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E703877" ref_strand="+" ref_description="SGN-E703877 [FA22CH06]">
      <seq>aagagacacacctctcgccggttgccgtcactcgccgcagttaatcagtcgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaagtatcaagttatctattattgaagaggctcgcaagaggatggctgctcaatcagctacaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52869" stop="55553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53169" g_stop="53235" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="145" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="326" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="424" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="55253" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="854" r_length="430" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E703877" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53169" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="55253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGACACACCTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTG</genome_strand>
        <mrna_strand>AAGAGACACACCTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAAGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728213" ref_strand="+" ref_description="SGN-E728213 [LA17AC09]">
      <seq>acacatacctctcgccggttgccgtcactcgccgcagttaatcagtcgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52872" stop="55478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53172" g_stop="53235" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="142" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="323" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="421" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="55178" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="776" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E728213" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53172" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="55178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACACCTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTAC</genome_strand>
        <mrna_strand>ACACATACCTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E316807" ref_strand="+" ref_description="SGN-E316807 [cTOB-6-G1]">
      <seq>acacacctttcgccggttgccgtcactcgccgcagttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgagaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagcttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52874" stop="55217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53174" g_stop="53235" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="140" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="321" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="419" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="54917" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="513" r_length="94" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E316807" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53174" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="54917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACACCTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATC</genome_strand>
        <mrna_strand>ACACACCTTTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGAAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGAGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGCTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337108" ref_strand="+" ref_description="SGN-E337108 [cTOE-7-M20]">
      <seq>gaggctctcgccggttgccgtcactcgccgcagttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaaccatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52880" stop="54966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53176" g_stop="53235" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="139" r_length="79" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="320" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54666" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="345" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E337108" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53176" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAA-CATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAA</genome_strand>
        <mrna_strand>GAGGCTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGAAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACCATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731323" ref_strand="+" ref_description="SGN-E731323 [LA26DB08]">
      <seq>cacctctcgccggttgccgtcactcgccgcagttaatcagtcgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctattattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52877" stop="55512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53177" g_stop="53235" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="137" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="318" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="416" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="55212" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="805" r_length="389" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E731323" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53177" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="55212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGA</genome_strand>
        <mrna_strand>CACCTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E704671" ref_strand="+" ref_description="SGN-E704671 [FA24DG07]">
      <seq>cacctctcgccggttgccgtcactcgccgcagttaatcagtcgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52877" stop="55508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53177" g_stop="53235" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="137" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="318" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="416" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="55208" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="801" r_length="385" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E704671" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53177" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="55208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTA</genome_strand>
        <mrna_strand>CACCTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726983" ref_strand="+" ref_description="SGN-E726983 [LA13BE09]">
      <seq>atccctcgccggttgccgtcactcgccgcagttaatcagtcgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctattattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaataatcataggttgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52879" stop="55575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53178" g_stop="53235" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="136" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="317" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="414" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="55275" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="866" r_length="452" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E726983" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53178" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="55275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGAACT</genome_strand>
        <mrna_strand>ATCCCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................AT-TTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347704" ref_strand="+" ref_description="SGN-E347704 [cTOF-26-I5]">
      <seq>acctctcgccggttgccgtcactcgccgcagttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaaggggtagcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52878" stop="55380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53178" g_stop="53235" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="136" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="317" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="415" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="55075" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="668" r_length="253" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E347704" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53178" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="55075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAA-GGGTAGC</genome_strand>
        <mrna_strand>ACCTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGAAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGGTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E702349" ref_strand="+" ref_description="SGN-E702349 [FA18BH08]">
      <seq>ctctcgccggttgccgtcactcgccgcagttaatcagtcgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctattattgaagaggctcgcaagaggatggctgctncatcagctacaactgcttaataatcataggttgaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52880" stop="55577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53180" g_stop="53235" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="134" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="315" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="413" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="55277" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="867" r_length="454" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E702349" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53180" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="55277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGAACTTG</genome_strand>
        <mrna_strand>CTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTNCATCAGCTACAACTGCTTAATAATCATAGGTTGAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E703203" ref_strand="+" ref_description="SGN-E703203 [FA20DD06]">
      <seq>ctctcgccggttgccgtcactcgccgcagttaatcagtcgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctattattgaagaggctcgcaagaggatggctgctcaatcacctacaactgcttaataatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52880" stop="55564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53180" g_stop="53235" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="134" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="315" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="413" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="55264" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="854" r_length="441" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E703203" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53180" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="55264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCA</genome_strand>
        <mrna_strand>CTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCACCTACAACTGCTTAATAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E543424" ref_strand="+" ref_description="SGN-E543424 [TUS-65-D18]">
      <seq>ctctcgccggttgccgtcactcgccgcagttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactgggtggtagaaacaggggaccntgtttggaatttcttagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctgnggcatgagttcgctacccgtttgggggatgtgttcactcttggtaaaggtagtaagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52880" stop="55464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53180" g_stop="53235" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="134" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="315" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="413" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="55164" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="757" r_length="344" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E543424" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53180" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="55164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACT-GGTGGTAGAAACAGGGGA-CGTG-TTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCC</genome_strand>
        <mrna_strand>CTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGAAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGGTGGTAGAAACAGGGGACCNTGTTTGGAATTTCTTAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGNGGCATGAGTTCGCTACCCGTTTGGGGGATGTGTTCACTCTTGGTAAAGGTAGTAAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342673" ref_strand="+" ref_description="SGN-E342673 [cTOF-7-P21]">
      <seq>tctcgccggttgccgtcactcgccgcagttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactgggtgtagaaacaggggacgtgttggaattcttagaatagagagaagcacagggtagctttgagacagttcacattcaggattccctggggcatgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52881" stop="55415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53181" g_stop="53235" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="133" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="314" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="412" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="55115" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="702" r_length="290" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E342673" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53181" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="55115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGT</genome_strand>
        <mrna_strand>TCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGAAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGGTGTAGAAACAGGGGACGTGTTGGAATTCTT-AGAATAGAGAGAAGCAC-AGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346943" ref_strand="+" ref_description="SGN-E346943 [cTOF-25-A1]">
      <seq>tctcgccggttgccgtcactcgccgcagttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52881" stop="55392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53181" g_stop="53235" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="133" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="314" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="412" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="55092" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="681" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E346943" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53181" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="55092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACAT</genome_strand>
        <mrna_strand>TCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGAAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E248629" ref_strand="+" ref_description="SGN-E248629 [cLEF-58-G12]">
      <seq>tctcgccggttgccgtcactcgccgcagttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaaaggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52881" stop="55363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53181" g_stop="53235" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="133" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="314" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="412" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="55063" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="652" r_length="240" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E248629" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53181" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="55063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAG</genome_strand>
        <mrna_strand>TCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGAAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAAGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342628" ref_strand="+" ref_description="SGN-E342628 [cTOF-7-B9]">
      <seq>tctcgccggttgccgtcactcgccgcagttaatcagtcggaaaaccgccaaaatgggcaagagggttgaagaaacatttgaaagacggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52881" stop="55303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53181" g_stop="53235" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="136" r_length="80" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="317" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="415" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="55003" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="595" r_length="180" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E342628" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53181" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="55003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAAT-GGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAA-GA-GGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTG</genome_strand>
        <mrna_strand>TCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGAAAACCGCCAAAATGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAAGACGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390216" ref_strand="+" ref_description="SGN-E390216 [TUS-39-H18]">
      <seq>tctcgccggttgccgtcactcgccgcagttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52881" stop="55220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53181" g_stop="53235" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="133" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="314" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="412" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="54920" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="509" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E390216" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53181" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="54920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCC</genome_strand>
        <mrna_strand>TCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGAAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311422" ref_strand="+" ref_description="SGN-E311422 [cLEZ-18-G19]">
      <seq>tctcgccggttgccgtcactcgccgcagttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52881" stop="55052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53181" g_stop="53235" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="133" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="314" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="412" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="54836" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="425" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E311422" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53181" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="54836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCA</genome_strand>
        <mrna_strand>TCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGAAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E263326" ref_strand="+" ref_description="SGN-E263326 [cLEG-62-K20]">
      <seq>tcgccggttgccgtcactcgccgcagttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtaaaaacangggacgtgttggaattcttaagaatagagagaagcacaagggtagctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52883" stop="55379"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53183" g_stop="53235" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="131" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="312" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="410" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="55079" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="666" r_length="256" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E263326" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53183" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="55079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTG</genome_strand>
        <mrna_strand>TCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGAAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAAAAACANGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258678" ref_strand="+" ref_description="SGN-E258678 [cLEG-50-F5]">
      <seq>tcgccggttgccgtcactcgccgcagttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52883" stop="55316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53183" g_stop="53235" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="131" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="312" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="410" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="55016" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="603" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E258678" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53183" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="55016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTG</genome_strand>
        <mrna_strand>TCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGAAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302257" ref_strand="+" ref_description="SGN-E302257 [cLEW-19-F1]">
      <seq>tcgccggttgccgtcactcgccgcagttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52883" stop="55192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53183" g_stop="53235" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="131" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="312" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="410" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="54892" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="479" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E302257" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53183" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="54892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGAT</genome_strand>
        <mrna_strand>TCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGAAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286148" ref_strand="+" ref_description="SGN-E286148 [cLES-13-F12]">
      <seq>tcgccggttgccgtcactcgccgcagttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttggtactattccaaagacaaatgagagcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52883" stop="54975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53183" g_stop="53235" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="131" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="312" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54676" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="347" r_length="35" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E286148" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53183" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTC</genome_strand>
        <mrna_strand>TCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGAAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGGTACTATTCCAAAGACAAATGAGAGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287279" ref_strand="+" ref_description="SGN-E287279 [cLES-15-A14]">
      <seq>cgccggttgccgtctctcgccgcagttaatcagtcggaaaacctgctaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52884" stop="55145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53184" g_stop="53235" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="130" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="311" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="409" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="54845" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="431" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E287279" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53184" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="54845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGAT</genome_strand>
        <mrna_strand>CGCCGGTTGCCGTCTCTCGCCGCAGTTAATCAGTCGGAAAACCTGCTAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E276078" ref_strand="+" ref_description="SGN-E276078 [cLEN-12-B5]">
      <seq>gccggttgccgtcactcgccgcagttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52885" stop="55290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53185" g_stop="53235" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="129" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="310" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="408" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="54990" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="575" r_length="167" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E276078" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53185" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="54990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGA</genome_strand>
        <mrna_strand>GCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGAAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E297932" ref_strand="+" ref_description="SGN-E297932 [cLET-38-D7]">
      <seq>gccggttgccgtcactcgccgcagttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttataacagataatacttaccctgctggtttcatggatgttgtgactattccaaagacaaatgatagcttgcgacttctttatgacactaatggtcggttccgcctccactcactcacagacgaggaagccaagttcaaactttgcaaggttctatcagtacagtttggacagaacggtatcccatatatcaacacatatgatggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52885" stop="55197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53185" g_stop="53235" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="129" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="310" r_length="181" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="408" r_length="98" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.795" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="54897" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="482" r_length="74" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E297932" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53185" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="54897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAG</genome_strand>
        <mrna_strand>GCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGAAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTATAACAGATAATACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTGACTATTCCAAAGACAAATGATAGCTTGCGACTTCTTTATGACACTAATGGTCGGTTCCGCCTCCACTCACTCACAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCTATCAGTACAGTTTGGACAGAACGGTATCCCATATATCAACACATATGATGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E304206" ref_strand="+" ref_description="SGN-E304206 [cLEX-6-O15]">
      <seq>ccggttgccgtcactcgccgcagttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52886" stop="55221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53186" g_stop="53235" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="128" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="309" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="407" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="54921" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="505" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E304206" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53186" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="54921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCT</genome_strand>
        <mrna_strand>CCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGAAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336788" ref_strand="+" ref_description="SGN-E336788 [cTOE-5-O5]">
      <seq>ccggttgccgtcactctccgcagttaatcagtcggaaaaccgccaaaatggcaagaaggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52886" stop="55192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53186" g_stop="53235" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="128" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="309" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="407" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="54892" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="476" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E336788" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53186" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="54892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGAT</genome_strand>
        <mrna_strand>CCGGTTGCCGTCACTCTCCGCAGTTAATCAGTCGGAAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAAGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E250099" ref_strand="+" ref_description="SGN-E250099 [cLEG-4-M6]">
      <seq>ccggttgccgttatctcgccgcagttaatcagtcggaaaaccggcaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaancattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcancnccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52886" stop="54967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53186" g_stop="53235" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="129" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="310" r_length="181" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54667" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="336" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E250099" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53186" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGTTGCCGTCA-CTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAAT</genome_strand>
        <mrna_strand>CCGGTTGCCGTTATCTCGCCGCAGTTAATCAGTCGGAAAACCGGCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAANCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCANCNCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E708014" ref_strand="+" ref_description="SGN-E708014 [FA34CD11]">
      <seq>cttttcgtcactcgccgcagttaatcagtcgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagattagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgaattcgctacccgttttggggaatgtgttcactcttggtaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52890" stop="55455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53189" g_stop="53235" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="125" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="306" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="404" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="55155" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="737" r_length="333" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E708014" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53189" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="55155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCG-TTTGGGGAATGTGTTCACTCTTGGTAAAGG</genome_strand>
        <mrna_strand>CTTTTCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGATTAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAATTCGCTACCCGTTTTGGGGAATGTGTTCACTCTTGGTAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728741" ref_strand="+" ref_description="SGN-E728741 [LA18DC03]">
      <seq>ggcacgagggccgcagttaatcagtcgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcgttggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52902" stop="55254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53192" g_stop="53235" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.841"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="0.84"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="121" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="302" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="400" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="54954" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="531" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E728741" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53192" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="54954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTT</genome_strand>
        <mrna_strand>GGC-ACGAGGGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCGTTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E326166" ref_strand="+" ref_description="SGN-E326166 [cTOC-16-G23]">
      <seq>tcactcgccgcagttaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctgnggcatgagttcgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42460" stop="55421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53196" g_stop="53235" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="118" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="299" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="397" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="55121" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="695" r_length="298" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E326166" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53196" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="55121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTA</genome_strand>
        <mrna_strand>TCACTCGCCGCAGTTAATCAGTCGGAAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGNGGCATGAGTTCGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E452142" ref_strand="+" ref_description="SGN-E452142 [cSTS-15-F6]">
      <seq>ctcgccggcagctattcaatcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgttacgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactaagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctgnggcatgagtttgctacccgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42463" stop="55428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53199" g_stop="53235" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.838"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="116" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="297" r_length="181" r_score="0.928"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="0.90"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="395" r_length="98" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="0.94"/>
            <acceptor a_prob="0.795" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="55128" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="700" r_length="305" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E452142" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53199" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="55128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCC-GCAGTTAATCAGTCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTT</genome_strand>
        <mrna_strand>CTCGCCGGCAGCTATTCAATCGGAAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCTAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG............................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTAAGAGATGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGNGGCATGAGTTTGCTACCCGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700312" ref_strand="+" ref_description="SGN-E700312 [FA12DA11]">
      <seq>gccgcagttaatcagtcgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctattattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaataatcataggttgaacttgagattaattaatagatttggtcatttttctctttgtttagagggatgccggtcttattttttgtgttgcaattcaacatctgtgtacttggaactattttacatacctttttttgtccagaaaaaaaaaagactcaattgagatcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52902" stop="55725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53202" g_stop="53235" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="112" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="293" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="391" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="55424" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="991" r_length="600" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="992" polyA_stop="1005"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E700312" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>992</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53202" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="55424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGCAGTTAATCAGTCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGAACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTTGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACATACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCA</genome_strand>
        <mrna_strand>GCCGCAGTTAATCAGTCGGGAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGAACTTGAGATTAA-TTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGGTCTTATTTTTTGTGTTGCAATTCAACATCTGTGTACTTGGAACTATTTTACATACCTTTTTTTGTCCAGAAAAAAAAAAGACTCAATTGAGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E589138" ref_strand="+" ref_description="SGN-E589138 [42706]">
      <seq>gccggcagctattcaatcgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgtaatgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatctgtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaacagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgttttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctctacctaagggtaaacggtatctaaggttcatctatcattgaagaggctcgcaagaaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52902" stop="55530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53202" g_stop="53235" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.853"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="113" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="294" r_length="181" r_score="0.934"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="0.90"/>
            <acceptor a_prob="0.993" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="392" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.795" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="55230" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="805" r_length="413" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E589138" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E589138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53202" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="55230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCC-GCAGTTAATCAGTCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCG-TTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAA-GGTATC-AA-GTT-ATCTATTATTGAAGAGGCTCGCAAG-AGGAT</genome_strand>
        <mrna_strand>GCCGGCAGCTATTCAATCGGGAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG............................................................................................................................................................................................................................................................................ATGTTGTAATGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCTGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAACAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAACGGTATCTAAGGTTCATCTATCATTGAAGAGGCTCGCAAGAAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E449920" ref_strand="+" ref_description="SGN-E449920 [cSTS-7-L8]">
      <seq>cagctattcaatcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgttacgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactaagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccgtgggtgtctctacctaagggtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42470" stop="55488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53206" g_stop="53235" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.867"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="108" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="289" r_length="181" r_score="0.928"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="0.90"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="387" r_length="98" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="0.94"/>
            <acceptor a_prob="0.795" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="55188" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="752" r_length="365" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E449920" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53206" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="55188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTAATCAGTCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAA</genome_strand>
        <mrna_strand>CAGCTATTCAATCGGAAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCTAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG............................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTAAGAGATGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCGTGGGTGTCTCTACCTAAGGGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E486622" ref_strand="+" ref_description="SGN-E486622 [cSTE-22-B4]">
      <seq>cagctattcaatcgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatgctgctggttttatggatgttgtaatgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatctgtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactggtggtagaaacaggnngcgtgttggaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52906" stop="55330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53206" g_stop="53235" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="108" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="289" r_length="181" r_score="0.928"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="0.88"/>
            <acceptor a_prob="0.993" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="387" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.795" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="55046" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="610" r_length="223" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E486622" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E486622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53206" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="55046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTAATCAGTCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTC</genome_strand>
        <mrna_strand>CAGCTATTCAATCGGGAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATGCTGCTGGTTTTATGG............................................................................................................................................................................................................................................................................ATGTTGTAATGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCTGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGTGGTAGAAACAGGNNGCGTGTTGGAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E447868" ref_strand="+" ref_description="SGN-E447868 [cSTS-4-C15]">
      <seq>cgaggttcaatcggaaaacccgccaaaatggcaagagggttgaagaaacactttgaagaggctcaatgcgcctaagcattggatgccttgataaacttggaggtgcttttgctcctaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgttacgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactaagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttggggaatgtgttcactcttggtaaaggtagtaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43248" stop="55462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53207" g_stop="53235" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.690"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="110" r_length="80" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="291" r_length="181" r_score="0.928"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="0.90"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="389" r_length="98" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="0.94"/>
            <acceptor a_prob="0.795" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="55162" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="728" r_length="339" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E447868" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E447868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53207" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="55162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTAATCAGTCGGGAAA-CCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACA-TTTGAAGAGGCTCAATGCGCCTAAGCATTGGATG-CTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAG</genome_strand>
        <mrna_strand>CGAGGTTCAATCGGAAAACCCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACACTTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCTAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG............................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTAAGAGATGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E561103" ref_strand="+" ref_description="SGN-E561103 [20862]">
      <seq>gctattcaatcgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgtaatgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatctgtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaacagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttggggaatgtgttcactcttggtaaaggtagtaaggcatgggtgtctctacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52908" stop="55479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53208" g_stop="53235" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="106" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="287" r_length="181" r_score="0.934"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="0.90"/>
            <acceptor a_prob="0.993" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="385" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.795" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="55179" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="741" r_length="356" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E561103" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53208" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="55179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAATCAGTCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACC</genome_strand>
        <mrna_strand>GCTATTCAATCGGGAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG............................................................................................................................................................................................................................................................................ATGTTGTAATGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCTGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAACAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGGCATGGGTGTCTCTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E441818" ref_strand="+" ref_description="SGN-E441818 [cSTA-31-I24]">
      <seq>gagactagttctcttctctctctctccgccggcagctattcaatcgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgtaatgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatctgtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactgggtgtagaaacagggggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52896" stop="55335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53217" g_stop="53235" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="62" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="140" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="321" r_length="181" r_score="0.934"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="0.90"/>
            <acceptor a_prob="0.993" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="419" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.795" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="55035" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="631" r_length="212" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E441818" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53217" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="55035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACG</genome_strand>
        <mrna_strand>TCGGGAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG............................................................................................................................................................................................................................................................................ATGTTGTAATGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCTGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGGTGTAGAAACAGGGGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E444430" ref_strand="+" ref_description="SGN-E444430 [cSTA-42-L6]">
      <seq>gagactagttctcttctctctctctccgccggcagctattcaatcgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgccctaagcattggatgccttgataaaccttggaggtgcttttgctcccaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaaccaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgtaatgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatctgtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52896" stop="55295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53217" g_stop="53235" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="62" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="143" r_length="81" r_score="0.923"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="0.87"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="325" r_length="182" r_score="0.923"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="0.90"/>
            <acceptor a_prob="0.993" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="423" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.795" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="54995" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="595" r_length="172" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E444430" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53217" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="54995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCG-CCTAAGCATTGGATG-CTTGATAAA-CTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAA-CAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTG</genome_strand>
        <mrna_strand>TCGGGAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCCTAAGCATTGGATGCCTTGATAAACCTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACCAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG............................................................................................................................................................................................................................................................................ATGTTGTAATGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCTGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E441819" ref_strand="+" ref_description="SGN-E441819 [cSTA-31-I24]">
      <seq>gagactagttctcttctctctctctccgccggcagctattcaatcgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgagaggtcatttcaatcttgatgcaacgacaagatatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgtaatgattccgaagactaatgagagcttccgacttatttatgacactaagggtgggttccgtctgcacttactcagagatgaggaagccaagttcaaactttgcaaggtttgatttgcgcagtttggacagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52896" stop="55164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53217" g_stop="53235" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="62" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="140" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="321" r_length="181" r_score="0.923"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="0.90"/>
            <acceptor a_prob="0.993" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="419" r_length="98" r_score="0.888"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="0.90"/>
            <acceptor a_prob="0.795" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="54864" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="460" r_length="41" r_score="0.878"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E441819" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53217" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="54864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAA</genome_strand>
        <mrna_strand>TCGGGAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGAGAGGTCATTTCAATCTTGATGCAACGACAAGATATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG............................................................................................................................................................................................................................................................................ATGTTGTAATGATTCCGAAGACTAATGAGAGCTTCCGACTTATTTATGACACTAAGGGTGGGTTCCGTCTGCACTTACTCAGAGATGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTTGATTTGCGCAGTTTGGACAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E563020" ref_strand="+" ref_description="SGN-E563020 [1351]">
      <seq>cgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttggataaacttggaggtgcttttgctcccaagccttcttctggntccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgtaatgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatctgtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctggatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactggtggtagaaacagggggcgttgttggaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52918" stop="55345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53218" g_stop="53235" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="97" r_length="79" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="279" r_length="182" r_score="0.923"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="0.90"/>
            <acceptor a_prob="0.993" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="377" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.795" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="55045" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="601" r_length="224" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E563020" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E563020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53218" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="55045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTG-ATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGG-TCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCT-GATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACG-TGTTGGAATT</genome_strand>
        <mrna_strand>CGGGAAACCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGNTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG............................................................................................................................................................................................................................................................................ATGTTGTAATGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCTGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTTGTTGGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E557864" ref_strand="+" ref_description="SGN-E557864 [16730]">
      <seq>gaaaccgcaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgtaatgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatctgtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactggtggtagaaacaggggggcgtgttggaattcttaagaacagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttggggaatgtgttcactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43249" stop="55446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53221" g_stop="53235" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="92" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="273" r_length="181" r_score="0.934"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="0.90"/>
            <acceptor a_prob="0.993" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="371" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.795" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="55146" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="695" r_length="324" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E557864" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E557864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53221" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="55146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACA-GGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCT</genome_strand>
        <mrna_strand>GAAACCG-CAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG............................................................................................................................................................................................................................................................................ATGTTGTAATGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCTGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGGCGTGTTGGAATTCTTAAGAACAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGGAATGTGTTCACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E574428" ref_strand="+" ref_description="SGN-E574428 [33894]">
      <seq>ccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcctaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgttacgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactaagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaatagagagaagcacaagggtagcctttgagacagttcacattcagcgattccctggggcatgagtttgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccgtgggtgtctctacctaaanggtaaaggtatcaacgttatctatcattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43248" stop="55512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53225" g_stop="53235" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="89" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="270" r_length="181" r_score="0.928"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="0.90"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="368" r_length="98" r_score="0.939"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="0.94"/>
            <acceptor a_prob="0.795" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="55212" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="761" r_length="393" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E574428" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E574428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53225" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="55212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAG-CTTTGAGACAGTTCACATTCAG-GATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCT-AAGGGTAAAGGTATCAA-GTTATCTATTATTGA</genome_strand>
        <mrna_strand>CCGCCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCTAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG............................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTAAGAGATGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCCTTTGAGACAGTTCACATTCAGCGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCGTGGGTGTCTCTACCTAAANGGTAAAGGTATCAACGTTATCTATCATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E537443" ref_strand="+" ref_description="SGN-E537443 [TUS-56-A18]">
      <seq>ccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaagatggctgctcaatcagctacaactgcttaataatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43248" stop="55565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53228" g_stop="53235" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="86" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="267" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="365" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="55265" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="807" r_length="442" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E537443" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53228" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="55265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCAT</genome_strand>
        <mrna_strand>CCAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAAGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266327" ref_strand="+" ref_description="SGN-E266327 [cLEI-3-A21]">
      <seq>caaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcgggtccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43249" stop="55222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53229" g_stop="53235" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54020" g_stop="54097" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="85" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="266" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="364" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54824" g_stop="54922" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="463" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E266327" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53229" e_stop="53235"/>
          <exon e_start="54020" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="54922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATGGTTAGTTTTCTCTATCTGTTTATTAATCTCGTTAATTTTTTTAGATTGTTATTTGTTGCCTGATTGATCAGTTGTATTTGAGTCTCCATGGCTTTTGTTCCAGGTCTAGACAGTACTGTATCAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATGTAATATTATATTCTTGGCTGTGCTTTTCGATTTATGCGCTGAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAGGGCTTGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACAGTTTTTTTAGTTGTATTTTGCTGTCATTGTGATTGCTGTTGCACTCTGTGTTGTACTGTATCCTTCTTAAAAAATTAATTTTGTTACAAGATAAGATTACTAAATAATTAGTAAAGACATAGTGAGAAAATAAATAGATCAGGCCAAATTGGTCGTTACACAAAGTAAGACAAATCCCTTACTGCTGATTTAATGATAGCTTGAGGTTTGGACAGTGGAATTGTGTAGTATAAGTTCAAGTTATTTACTCGATGCATTGAATAATTGCTCTTTACCTTTGTGAAAAAACAAGCTTCTATTGTTGTTTGACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTAAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTC</genome_strand>
        <mrna_strand>CAAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGGTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E719190" ref_strand="+" ref_description="SGN-E719190 [FC07AB06]">
      <seq>gagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataaaattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43262" stop="55454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54024" g_stop="54097" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54193" g_stop="54373" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="255" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="353" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54824" g_stop="55154" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="684" r_length="331" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E719190" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54024" e_stop="54097"/>
          <exon e_start="54193" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="55154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTTCTTGACTTTACTTTTCTCCTTGGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAG</genome_strand>
        <mrna_strand>GAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAAATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E576149" ref_strand="+" ref_description="SGN-E576149 [59322]">
      <seq>cacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgttacgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactaagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccgtgggtgtctctacctaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43454" stop="55483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54217" g_stop="54373" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="0.90"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="255" r_length="98" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="0.94"/>
            <acceptor a_prob="0.795" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54824" g_stop="55183" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="615" r_length="360" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E576149" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E576149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54217" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="55183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAG</genome_strand>
        <mrna_strand>CACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG............................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTAAGAGATGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCGTGGGTGTCTCTACCTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E245751" ref_strand="+" ref_description="SGN-E245751 [cLEF-48-A3]">
      <seq>gccattggttattatgctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaaaggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="50448" stop="55242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54237" g_stop="54373" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="235" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54824" g_stop="54942" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="354" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E245751" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54237" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="54942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCAT</genome_strand>
        <mrna_strand>GCCATTGGTTATTATGCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAAGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E553439" ref_strand="+" ref_description="SGN-E553439 [cTSC-1-B8]">
      <seq>attggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaataatcataggttgtacttgagattaatttaatagatttggtcatttttctctttgtttagagggatgccgttcttattttttgtgttgcatttcaacatctgtgtacttggtactattttacctacctttttttgtcaggaaaaaagaaagactcagttgagatcaatcagttgcctttttatgtgatnaaaaaaaaaaaaataaaattacacctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="50451" stop="55745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54240" g_stop="54373" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="232" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54824" g_stop="55446" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="856" r_length="624" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="857" polyA_stop="874"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E553439" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54240" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="55446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGAACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTTGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACATACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCAATCAGTTGCC-TTTTATGTGATA</genome_strand>
        <mrna_strand>ATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGTACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTTGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACCTACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCAATCAGTTGCCTTTTTATGTGATN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E543423" ref_strand="+" ref_description="SGN-E543423 [TUS-65-D18](-)">
      <seq>ggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaataatcataggttgtacttgagattaatttaatagatttggtcatttttctctttgtttagagggatgccgttcttattttttgtgttgcatttcaacatctgtgtacttggtactattttacctacctttttttgtcaggaaaaaagaaagactcagttgagatcaatcagttgccttttatgtgataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="50468" stop="55746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54257" g_stop="54373" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="215" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54824" g_stop="55446" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="838" r_length="623" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E543423" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54257" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="55446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGAACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTTGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACATACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCAATCAGTTGCCTTTTATGTGATA</genome_strand>
        <mrna_strand>GGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGTACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTTGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACCTACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCAATCAGTTGCCTTTTATGTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E537440" ref_strand="+" ref_description="SGN-E537440 [TUS-56-A18](-)">
      <seq>tgatgcaacgccaagttatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaataatcataggttgtacttgagattaatttaatagatttggtcatttttctctttgtttagagggatgccgttcttattttttgtgttgcatttcaacatctgtgtacttggtactattttacctacctttttttgtcaggaaaaaagaaagactcagttgagatcaatcagttgccttttatgtgatagtattttattgtccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="50516" stop="55758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54305" g_stop="54373" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="167" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54824" g_stop="55456" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="800" r_length="633" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="805" polyA_stop="822"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E537440" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54305" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="55456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGAACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTTGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACATACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCAATCAGTTGCCTTTTATGTGATAGTATTTTATT</genome_strand>
        <mrna_strand>TGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGTACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTTGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACCTACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCAATCAGTTGCCTTTTATGTGATAGTATTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E272375" ref_strand="+" ref_description="SGN-E272375 [cLEM-19-O17]">
      <seq>tatggttgatgggaaagttagaacagataagacttaccctgctggtttcatggatgttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctgtggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="50532" stop="55471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54321" g_stop="54373" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54642" g_stop="54739" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="151" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54824" g_stop="55171" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="499" r_length="348" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E272375" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54321" e_stop="54373"/>
          <exon e_start="54642" e_stop="54739"/>
          <exon e_start="54824" e_stop="55171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACACCTCTATTAGAGTGTCTTTCATTTCAAAACCTTTAGATTTATGTTCTCCTTATTTCTGTACTGTCTAGGTTTGCGGTCTTACTGATTCATCTATATACACATGCTTTCACAGATCCAAAGACCATTGTTGATGAGAGTGTATTCAAGCTTTTTTATCAAAAATTATTGTCTCAGTGTCCTTTTTTCTTATTTTTTTTCTTGTTGCTATGTTTGTTGAATTCCTTGACAAATTGGTAATGCTTTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTG</genome_strand>
        <mrna_strand>TATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG............................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGTGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E269603" ref_strand="+" ref_description="SGN-E269603 [cLEM-2-H1]">
      <seq>ttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaataatcataggttgtacttgagattaatttaatagatttggtcatttttctcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="54345" stop="55612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54645" g_stop="54739" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54824" g_stop="55312" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="584" r_length="489" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E269603" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54645" e_stop="54739"/>
          <exon e_start="54824" e_stop="55312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGAACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTT</genome_strand>
        <mrna_strand>TTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGTACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E271440" ref_strand="+" ref_description="SGN-E271440 [cLEM-5-J15]">
      <seq>ttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaataatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="54345" stop="55565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54645" g_stop="54739" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54824" g_stop="55265" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="537" r_length="442" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E271440" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54645" e_stop="54739"/>
          <exon e_start="54824" e_stop="55265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCAT</genome_strand>
        <mrna_strand>TTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E268275" ref_strand="+" ref_description="SGN-E268275 [cLEM-3-A10]">
      <seq>ttgttactattccaaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctatcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="54345" stop="55511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54645" g_stop="54739" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54824" g_stop="55211" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="483" r_length="388" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E268275" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54645" e_stop="54739"/>
          <exon e_start="54824" e_stop="55211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTG</genome_strand>
        <mrna_strand>TTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E612851" ref_strand="+" ref_description="SGN-E612851 [62618]">
      <seq>cgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactaagagatgaggaagccaagttcaaactttgcaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaaatttgatgttggtaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccgtgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctactcaatcagcgacaactgcttaaaaatgataggttgaacttgagatgaatttacatagattgggccatgtttctctttgtttagagggatgccattcttattggtgtgttgcatttcaacatctgtgtactcggtactgatttacttgcctttttttgtcgggaaaaaaggtagactgagttgagatcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43903" stop="55726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54657" g_stop="54739" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="0.94"/>
            <acceptor a_prob="0.795" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54824" g_stop="55426" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="686" r_length="603" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E612851" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E612851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54657" e_stop="54739"/>
          <exon e_start="54824" e_stop="55426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGAACTTGAGATTAATTTA-ATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTTGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACATACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCAAT</genome_strand>
        <mrna_strand>CGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTAAGAGATGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCGTGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTACTCAATCAGCGACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTACATAGATTGGGCCATGTTTCTCTTTGTTTAGAGGGATGCCATTCTTA-TTGGTGTGTTGCATTTCAACATCTGTGTACTCGGTACTGATTTACTTGCCTTTTTTTGTCGGGAAAAAAGGTAGACTGAGTTGAGATCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E320781" ref_strand="+" ref_description="SGN-E320781 [cTOB-27-M13]">
      <seq>aaagacaaatgagagcttccgacttctttatgacactaagggtcggttccgcctccactcactcagagacgaggaagccaagttcaaactttgcaaggttcgatcagtccagtttggacagaagggtatcccatatctcaacacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaataatcatagggtgtacttgagattaatttaatagatttggtcatttttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="54358" stop="55610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54658" g_stop="54739" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54824" g_stop="55310" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="569" r_length="487" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E320781" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54658" e_stop="54739"/>
          <exon e_start="54824" e_stop="55310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAGGTTTGAACCTGTATCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGCTGTGCTGCTTAAGTAGTGACCTTGTTTTCTGCTCGCAGTTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGAACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCT</genome_strand>
        <mrna_strand>AAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG....................................................................................TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGGTGTACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E304067" ref_strand="+" ref_description="SGN-E304067 [cLEX-6-O15](-)">
      <seq>cacatatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaataatcataggttgtacttgagattaatttaatagatttggtcatttttctctttgtttagagggatgccgttcttattttttgtgttgcatttcaacatctgtgtacttggtactattttacctacctttttttgtcaggaaaaaagaaagactcagttgagatcaatcagttgccttttatgtgataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="54583" stop="55746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54883" g_stop="55446" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="564" r_length="564" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E304067" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54883" e_stop="55446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGAACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTTGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACATACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCAATCAGTTGCCTTTTATGTGATA</genome_strand>
        <mrna_strand>CACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGTACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTTGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACCTACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCAATCAGTTGCCTTTTATGTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E581771" ref_strand="+" ref_description="SGN-E581771 [7400]">
      <seq>ttttcacataaaaggcaactgattgatctcaactcagtctaccttttttcccggacaaaaaaaggcaagtaaatcagtaccgagtacacagatgttgaaatgcaacacacaaaataagaatggcatccctctaagacaaagagaaacatggcccaatctattaaattcatctcaagttcaacctatcatttttaagcagttgtcgctgattgagtagccatcctcttggcgagcctcttcaatgatagataacttgatacctttacccttaggtagagacacccacggcttactacctttaccaagagtgaacacattccccaaacgggtagcaaactcatgccccaggggaatcctgaatgtgaactgtctcaaagctacccttgtgcttctctctattcttaagaattccaacacgccccctgtttctaccaccagtaaccatgaccacattaccaacatcaaatttgatcgaagtcaacaatcttcatcggaatctaagtccagcttcgatggtgtcattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="55746" stop="54630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55447" g_stop="54930" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E581771" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E581771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55447" e_stop="54930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATCACATAAAAGGCAACTGATTGATCTCAACTGAGTCTTTCTTTTTT-CCTGACAAAAAAAGGTATGTAAAATAGTACCAAGTACACAGATGTTGAAATGCAACACAAAAAATAAGAACGGCATCCCTCTAA-ACAAAGAGAAAAATGACCAAATCTATTAAATTAATCTCAAGTTCAACCTATGATTATTAAGCAGTTGTAGCTGATTGAGCAGCCATCCTCTT-GCGAGCCTCTTCAATAATAGATAACTTGATACCTTTACCCTTAGGTAAAGACACCCATGGCTTACTACCTTTACCAAGAGTGAACACATTCCCCAAACGGGTAGCGAACTCATGCCCCA-GGGAATCCTGAATGTGAACTGTCTCAAAGCTACCCTTGTGCTTCTCTCTATTCTTAAGAATTCCAACACGTCCCCTGTTTCTACCACCAGTAACCATAACCACATTACCAACATCAAACTTGAT-GAAGTCAACAATCTT-ATTGGAATCTAAGTCCAGCTT-GATGGTGTCATTGG</genome_strand>
        <mrna_strand>TTTTCACATAAAAGGCAACTGATTGATCTCAACTCAGTCTACCTTTTTTCCCGGACAAAAAAAGGCAAGTAAATCAGTACCGAGTACACAGATGTTGAAATGCAACACACAAAATAAGAATGGCATCCCTCTAAGACAAAGAGAAACATGGCCCAATCTATTAAATTCATCTCAAGTTCAACCTATCATTTTTAAGCAGTTGTCGCTGATTGAGTAGCCATCCTCTTGGCGAGCCTCTTCAATGATAGATAACTTGATACCTTTACCCTTAGGTAGAGACACCCACGGCTTACTACCTTTACCAAGAGTGAACACATTCCCCAAACGGGTAGCAAACTCATGCCCCAGGGGAATCCTGAATGTGAACTGTCTCAAAGCTACCCTTGTGCTTCTCTCTATTCTTAAGAATTCCAACACGCCCCCTGTTTCTACCACCAGTAACCATGACCACATTACCAACATCAAATTTGATCGAAGTCAACAATCTTCATCGGAATCTAAGTCCAGCTTCGATGGTGTCATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E225903" ref_strand="+" ref_description="SGN-E225903 [cLEL-31-A19](-)">
      <seq>aagctggacttagattccaataagattgttgacttcatcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcccaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaataatcataggttgtacttgagattaatttaatagatttggtcatttttctctttgtttagagggatgccgttcttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="54644" stop="55634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54944" g_stop="55333" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="391" polyA_stop="409"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E225903" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54944" e_stop="55333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGAACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTT</genome_strand>
        <mrna_strand>AAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCCCAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGTACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E221458" ref_strand="+" ref_description="SGN-E221458 [cLEL-10-J8](-)">
      <seq>gttgacttcatcaagtttaatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcccaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaataatcataggttgtacttgagattaatttaatagatttggtcatttttctctttgtttagagggatgccgttcttattttttgtgttgcatttcaacatctgtgtacttggtactattttacctacctttttttgtcaggaaaaaagaaagactcagttgagatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="54671" stop="55725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54971" g_stop="55424" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="455" polyA_stop="470"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E221458" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54971" e_stop="55424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGAACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTTGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACATACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCA</genome_strand>
        <mrna_strand>GTTGACTTCATCAAGTTTAATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCCCAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGTACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTTGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACCTACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E227583" ref_strand="+" ref_description="SGN-E227583 [cLEL-30-O20](-)">
      <seq>catcaagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaataatcataggttgtacttgagattaatttaatagatttggtcatttttctctttgtttagagggatgccgttcttattttttgtgttgcatttcaacatctgtgtacttggtactattttacctacctttttttgtcaggaaaaaagaaagactcagttgagatcaatcagttgccccctatgtgatagtattttattgttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="54679" stop="55762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54979" g_stop="55462" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="498"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E227583" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54979" e_stop="55462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGAACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTTGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACATACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCAATCAGTTGCCTTTTATGTGATAGTATTTTATTGTTACA</genome_strand>
        <mrna_strand>CATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGTACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTTGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACCTACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCAATCAGTTGCCCCCTATGTGATAGTATTTTATTGTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E226191" ref_strand="+" ref_description="SGN-E226191 [cLEL-31-A19](-)">
      <seq>aagtttgatgttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaataatcataggttgtacttgagattaatttaatagatttggtcatttttctctttgtttagagggatgccgttcttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="54683" stop="55634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54983" g_stop="55333" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="352" polyA_stop="370"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E226191" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54983" e_stop="55333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGAACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTT</genome_strand>
        <mrna_strand>AAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGTACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E225803" ref_strand="+" ref_description="SGN-E225803 [cLEL-17-A23](-)">
      <seq>gttggtaatgtggttatggttactggtggtagaaacaggggacgtgttggaattcttaagaatagagagaagcccaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaaaaggatggctgctcaatcagctacaactgcttaataatcataggttgtacttgagattaatttaatagatttggtcatttttctctttgtttaacccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="54692" stop="55617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54992" g_stop="55317" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="331" polyA_stop="346"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E225803" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54992" e_stop="55317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGAACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTA</genome_strand>
        <mrna_strand>GTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCCCAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAAAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGTACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E610782" ref_strand="+" ref_description="SGN-E610782 [57950]">
      <seq>gtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaacagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctactcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaatagattgggccatgtttctctttgtttagagggatgccattcttattttgtgtgttgcatttcaacatctgtgtactcggtactgatttacttacctttttttgtcgggaaaaaaggtagactgagttgagatcaatcagttgccttttatgtgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="54704" stop="55746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55004" g_stop="55446" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E610782" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E610782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55004" e_stop="55446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGAACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTTGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACATACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCAATCAGTTGCCTTTTATGTGATA</genome_strand>
        <mrna_strand>GTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAACAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTACTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGATTGGGCCATGTTTCTCTTTGTTTAGAGGGATGCCATTCTTATTTTGTGTGTTGCATTTCAACATCTGTGTACTCGGTACTGATTTACTTACCTTTTTTTGTCGGGAAAAAAGGTAGACTGAGTTGAGATCAATCAGTTGCCTTTTATGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E412717" ref_strand="-" ref_description="SGN-E412717 [STM-16-P13]">
      <seq>cagggggcgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccgtgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctactcaatcagcgacaactgcttaaaaatgataggttgaacttgagatgaatttaatagattgggccatgtttctctttgtttagagggatgccattcttattttgtgtgttgcatttcaacatctgtgtactcggtactgatttacttgcctttttttgtcgggaaaaaaggtagactgagttgagatcaatcagttgccttttatgtgatagtattttattgcgacagagtttaaggaccttgtccattagtatattcacttatttcaaaatgagttttggttgtaatattttcaaatctaacctggagttggattccaaatttggtatagtgcagtaaccctggaaaaaaaaaaaaaaaaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="48249" stop="87540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55027" g_stop="55578" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55579" i_stop="55913" i_length="335">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55914" g_stop="55924" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="564" r_length="11" r_score="0.545"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55925" i_stop="56448" i_length="524">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.416" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56449" g_stop="56458" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="574" r_length="10" r_score="0.700"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E412717" ref_strand="-">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E412717" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="55027" e_stop="55578"/>
          <exon e_start="55914" e_stop="55924"/>
          <exon e_start="56449" e_stop="56458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGAACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTTGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACATACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCAATCAGTTGCCTTTTATGTGATAGTATTTTATTGTTAC--AGTTTATGATCTTTGTCGATGAGTTTATTCACTTATTTCAAAATGTGTTTTTGGTTGTAATATCTTTAAATCCAACCTGGTGTTGGATTCCAAATTTGGTATAGTGCACTAAACTTGATTCCTACTTCCTTTTTCGTAAACTTCAAATGAAGTGGTTTCTTTTGTCCTGCAAATAGTATAATCAAACATAATTGTCTAATTTGATATATTTTCCGAATCTCTTGCCAGTTAATTTCTGATTTTGATGTAATTTTGTTTGAGTGGTGTCATTAGAGTTAAAATGAGAAGTTAAGTCATAAATTATACAGACTTAACTGAGTGAGTGCAACCAAGGATTAATTACACTTGATATTGGTTTACATAGTCCATCTTTTGTATTAAAATGTAAGAAATAAGAATCAATTAAACATGATATTGGTTTACATAGTTCATCTTTTTTATTAAAATGTAAGAAATAAGAATCATATCCTCAACGATGAAATGAAAGTTATCGTATTGTCAGATGCAAGTGACAACTCTTCAAGGCAAACGATCAACTAAAACTATTTAGTTAAAAAATAGTGATTTTATTTCTGCTAATGTAAGTGCCCAAAGCCATTTTATGTATAGGTAAGTGAATACAAAGTTTAAAGAAATTCTCTCTGAAAATCAATGATATTTATATGTTTGACATATCTATTCATTTTCCATTTTATACAAAAAGAACTTCAATATCAAGTTAGTACAACAAAAATGCTGAGCATGTAGTTAGTCATATTAGGCACAAATCATCACTTAGTAGACATAAAATTACACAACCAGATACGACTTAGTAGAAATAAACATAGTGTTTAACCAAAGAGCAAATAGAATCTAAAACAGTATACGAAATATGCACGGTAAATTCTCACATCAATTCAATCACAATAGTAATTATTGCCTGCATAACAAAATAGAATGTTAGACTTTTGGTTTTCAAGCTAGAAAATTCAAACTTCTTTCTTTCAGATAAATATAG</genome_strand>
        <mrna_strand>CAGGGGGCGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCGTGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTACTCAATCAGCGACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGATTGGGCCATGTTTCTCTTTGTTTAGAGGGATGCCATTCTTATTTTGTGTGTTGCATTTCAACATCTGTGTACTCGGTACTGATTTACTTGCCTTTTTTTGTCGGGAAAAAAGGTAGACTGAGTTGAGATCAATCAGTTGCCTTTTATGTGATAGTATTTTATTGCGACAGAGTTTAAGGACCTTGTCCATTAGTATATTCACTTATTTCAAAATGAG-TTTTGGTTGTAATATTTTCAAATCTAACCTGGAGTTGGATTCCAAATTTGGTATAGTGCAGTAACCCTG...............................................................................................................................................................................................................................................................................................................................................GAAAAAAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E225330" ref_strand="+" ref_description="SGN-E225330 [cLEL-17-A23](-)">
      <seq>ggggacgtgttggaattcttaagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaataatcataggttgtacttgagattaatttaatagatttggtcatttttctctttgtttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="54729" stop="55619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55029" g_stop="55324" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55325" i_stop="55397" i_length="73">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.922" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55398" g_stop="55410" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="309" r_length="13" r_score="0.769"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E225330" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55029" e_stop="55324"/>
          <exon e_start="55398" e_stop="55410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGAACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTTGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACATACCTTTTTTTGTCAGGAAAAAAGAAAGA</genome_strand>
        <mrna_strand>GGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGTACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAAAAAAAA.........................................................................AAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E222026" ref_strand="+" ref_description="SGN-E222026 [cLEL-10-J8](-)">
      <seq>aagaatagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaataatcataggttgtacttgagattaatttaatagatttggtcatttttctctttgtttagagggatgccgttcttattttttgtgttgcatttcaacatctgtgtacttggtactattttacctacctttttttgtcaggaaaaaagaaagactcagttgagatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="54749" stop="55725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55049" g_stop="55424" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="377" polyA_stop="392"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E222026" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55049" e_stop="55424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGAACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTTGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACATACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCA</genome_strand>
        <mrna_strand>AAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGTACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTTGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACCTACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E609306" ref_strand="+" ref_description="SGN-E609306 [25311]">
      <seq>cggcacgagggtagctttgagacagtcacattcaggatccctggggcatgagtttgctaccgtttggggaatgtgtcactcttggtaaaggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctactcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaatagattgggccatgtttctctttgtttagagggatgccattcttattttgtgtgttgcatttcaacatctgtgtactcggtactgatttacttacctttttttgtcgggaaaaaaggtagactgagttgagatcaatcagttgccttttatgtgatagtattttattgcgacagagtttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="54763" stop="55770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55061" g_stop="55456" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="405" polyA_stop="421"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E609306" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E609306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55061" e_stop="55456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGAACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTTGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACATACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCAATCAGTTGCCTTTTATGTGATAGTATTTTATT</genome_strand>
        <mrna_strand>CGGCACGAGGGTAGCTTTGAGACAGT-CACATTCAGGA-TCCCTGGGGCATGAGTTTGCTA-CCGTTTGGGGAATGTG-TCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTACTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGATTGGGCCATGTTTCTCTTTGTTTAGAGGGATGCCATTCTTATTTTGTGTGTTGCATTTCAACATCTGTGTACTCGGTACTGATTTACTTACCTTTTTTTGTCGGGAAAAAAGGTAGACTGAGTTGAGATCAATCAGTTGCCTTTTATGTGATAGTATTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E227184" ref_strand="+" ref_description="SGN-E227184 [cLEL-30-H15](-)">
      <seq>gctttgagacagttcacattcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaaaaggatggctgctcaatcagctacaactgcttaataatcataggttggacttgagattaatttaatagatttggtcatttttctctttgtttagagggaagccgttcttattttttgtgttgcatttcaacatctgtgtacttggtactattttacctacctttttttgtcaggaaaaaagaaagactcagttgagatcaatcagttgccttttatgtgatagtattttattgttacagtttatgatctttgtcgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="54774" stop="55780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55074" g_stop="55479" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="406" r_length="406" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="407" polyA_stop="437"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E227184" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55074" e_stop="55479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGAACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTTGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACATACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCAATCAGTTGCCTTTTATGTGATAGTATTTTATTGTTACAGTTTATGATCTTTGTCG</genome_strand>
        <mrna_strand>GCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAAAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGGACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGAAGCCGTTCTTATTTTTTGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACCTACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCAATCAGTTGCCTTTTATGTGATAGTATTTTATTGTTACAGTTTATGATCTTTGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E227688" ref_strand="+" ref_description="SGN-E227688 [cLEL-30-H15](-)">
      <seq>tcaggattccctggggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctatcattgaaaaggctcgcaaaaggatggctgctcaatcagctacaactgcttaataatcataggttggacttgagattaatttaatagatttggtcatttttctctttgtttaaagggaagccggtcttattttttgtggtgcatttcaacatctgtggacttgggactattttacctacctttttttgtcaggaaaaaagaaagactcagttgagatcaatcagttgccttttatgtgatagtattttattgttacagtttatgatctttgtcgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="54793" stop="55780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55093" g_stop="55479" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="388" polyA_stop="418"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E227688" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55093" e_stop="55479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGAACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTTGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACATACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCAATCAGTTGCCTTTTATGTGATAGTATTTTATTGTTACAGTTTATGATCTTTGTCG</genome_strand>
        <mrna_strand>TCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAAAGGCTCGCAAAAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGGACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAAAGGGAAGCCGGTCTTATTTTTTGTGGTGCATTTCAACATCTGTGGACTTGGGACTATTTTACCTACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCAATCAGTTGCCTTTTATGTGATAGTATTTTATTGTTACAGTTTATGATCTTTGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E607672" ref_strand="+" ref_description="SGN-E607672 [23643]">
      <seq>gggcatgagttgctacccgtttggggaatgtgtcactcttggtaaaggtagtaagccgtgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctactcaatcagcgacaactgcttaaaaatgataggttgaacttgagatgaatttaatagattgggccatgtttctctttgtttagagggatgccattcttattttgtgtgttgcatttcaacatctgtgtactcggtactgatttacttgcctttttttgtcgggaaaaaaggtagactgagttgagatcaaaaaaagggggggcccggtaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="54806" stop="55725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55106" g_stop="55424" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E607672" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E607672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55106" e_stop="55424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGAACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTTGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACATACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCA</genome_strand>
        <mrna_strand>GGGCATGAGTT-GCTACCCGTTTGGGGAATGTG-TCACTCTTGGTAAAGGTAGTAAGCCGTGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTACTCAATCAGCGACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGATTGGGCCATGTTTCTCTTTGTTTAGAGGGATGCCATTCTTATTTTGTGTGTTGCATTTCAACATCTGTGTACTCGGTACTGATTTACTTGCCTTTTTTTGTCGGGAAAAAAGGTAGACTGAGTTGAGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E228847" ref_strand="+" ref_description="SGN-E228847 [cLEL-29-D24](-)">
      <seq>ggcatgagttcgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctttacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaataatcataggttgtacttgagattaatttaatagatttggtcatttttctctttgtttagagggatgccgttcttattttttgtgttgcatttcaacatctgtgtacttggtactattttacctacctttttttgtcaggaaaaaagaaagactcagttgagatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="54807" stop="55725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55107" g_stop="55424" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="319" polyA_stop="334"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E228847" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55107" e_stop="55424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGAACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTTGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACATACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCA</genome_strand>
        <mrna_strand>GGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGTACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTTGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACCTACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E309698" ref_strand="+" ref_description="SGN-E309698 [cLEY-26-A22]">
      <seq>ttcactcttggtaaaggtagtaagccatgggtgtctttaccctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctaccaactgcttaataatcataggttgtccttgagattaatttaatagatttggtcatttttctctttgtttagagggatgccgttcttattttttgtgttgcatttcaacatctgtgtacttggtactattttacctacctttttttgtcaggaaaaaagaaagactcagttgagatcaatcagttgccttttatgtgatagtattttattgttacagttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="54839" stop="55767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55139" g_stop="55474" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E309698" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55139" e_stop="55474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTA-CCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTA-CAACTGCTTAATAATCATAGGTTGAACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTTGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACATACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCAATCAGTTGCCTTTTATGTGATAGTATTTTATTGTTACAGTTTATGATCTT</genome_strand>
        <mrna_strand>TTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACCAACTGCTTAATAATCATAGGTTGTCCTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTTGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACCTACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCAATCAGTTGCCTTTTATGTGATAGTATTTTATTGTTACAGTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E228943" ref_strand="+" ref_description="SGN-E228943 [cLEL-29-D24](-)">
      <seq>atgggtgtctttacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaataatcataggttgtacttgagattaatttaatagatttggtcatttttctctttgtttagagggatgccgttcttattttttgtgttgcatttcaacatctgtgtacttggtactattttacctacctttttttgtcaggaaaaaagaaagactcagttgagatcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="54865" stop="55725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55165" g_stop="55424" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="261" polyA_stop="276"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E228943" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>260</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55165" e_stop="55424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGAACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTTGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACATACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCA</genome_strand>
        <mrna_strand>ATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGTACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTTGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACCTACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E217265" ref_strand="+" ref_description="SGN-E217265 [cLEL-21-O5](-)">
      <seq>ctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcaatcagctacaactgcttaataatcataggttgtacttgagattaatttaatagatttggtcatttttctctttgtttagagggatgccgttcttattttttgtgttgcatttcaacatctgtgtacttggtactattttacctacctttttttgtcaggaaaaaagaaagactcagttgagatcaatcagttgccttttatgtgatagtattttattgttacagtttatgatctttgtcgatgagtttattcacttatttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="54879" stop="55804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55179" g_stop="55503" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="326" polyA_stop="339"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E217265" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55179" e_stop="55503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGAACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTTGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACATACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCAATCAGTTGCCTTTTATGTGATAGTATTTTATTGTTACAGTTTATGATCTTTGTCGATGAGTTTATTCACTTATTTCAAA</genome_strand>
        <mrna_strand>CTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGTACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTTGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACCTACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCAATCAGTTGCCTTTTATGTGATAGTATTTTATTGTTACAGTTTATGATCTTTGTCGATGAGTTTATTCACTTATTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E615986" ref_strand="+" ref_description="SGN-E615986 [65790]">
      <seq>gtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctactcaatcagctacaactgcttaaaaatgataggttgaacttgagatgaatttaatagattgggccatgtttctctttgtttagagggatgccattcttattttgtgtgttgcatttcaacatctgtgtactcggtactgatttacttacctttttttgtcgggaaaaaaggtagactgagttgagatcaatcagttgccttttatgtgatagtattttattgcgacagaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="54885" stop="55763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55185" g_stop="55456" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="280" polyA_stop="298"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E615986" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E615986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55185" e_stop="55456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGAACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTTGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACATACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCAATCAGTTGCCTTTTATGTGATAGTATTTTATT</genome_strand>
        <mrna_strand>GTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTACTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGATTGGGCCATGTTTCTCTTTGTTTAGAGGGATGCCATTCTTATTTTGTGTGTTGCATTTCAACATCTGTGTACTCGGTACTGATTTACTTACCTTTTTTTGTCGGGAAAAAAGGTAGACTGAGTTGAGATCAATCAGTTGCCTTTTATGTGATAGTATTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E217551" ref_strand="+" ref_description="SGN-E217551 [cLEL-21-O5](-)">
      <seq>ggtatcaagttatctatcattgaagaggctcgcaacaggatggctgctcaatcagctgggcactgcttaataatcataggttgtactttagattaatttaatagatttggtcatttttctctttgtttagagggaagccgttcttattttttgtgttgcatttcaacatctgtgtacttggtactattttacctacctttttttgtcaggaaaaaagaaagactcagttgagatcaatcagttgccttttatgtgatagtattttattgttacagtttatgatctttgtcgatgagtttattcacttatttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="44486" stop="55804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55190" g_stop="55503" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="316" polyA_stop="329"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E217551" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>314</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55190" e_stop="55503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCT-ACAACTGCTTAATAATCATAGGTTGAACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTTGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACATACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCAATCAGTTGCCTTTTATGTGATAGTATTTTATTGTTACAGTTTATGATCTTTGTCGATGAGTTTATTCACTTATTTCAAA</genome_strand>
        <mrna_strand>GGTATCAAGTTATCTATCATTGAAGAGGCTCGCAACAGGATGGCTGCTCAATCAGCTGGGCACTGCTTAATAATCATAGGTTGTACTTTAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGAAGCCGTTCTTATTTTTTGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACCTACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCAATCAGTTGCCTTTTATGTGATAGTATTTTATTGTTACAGTTTATGATCTTTGTCGATGAGTTTATTCACTTATTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E719684" ref_strand="+" ref_description="SGN-E719684 [FC08CC12]">
      <seq>agggcgattggcggccaatcggccgaattgaagacacacacctccccctgaaagccgttactcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataaaacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="56286" stop="58989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56584" g_stop="56655" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="97" r_length="72" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="175" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="356" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="454" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58689" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="841" r_length="387" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E719684" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56584" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTAAGACACACACCTCTCGCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATT</genome_strand>
        <mrna_strand>AATTGAAGACACACACCTCCCCCTGAAAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAAACTTACCCTGCTGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725226" ref_strand="+" ref_description="SGN-E725226 [FC26BH02]">
      <seq>cggccaaatcggccgaattgaagacacacacctcccttaaaaagccgttactcgccgcagctaatcagtcggaaacccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcaaagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="56311" stop="58926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56584" g_stop="56655" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="87" r_length="72" r_score="0.847"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="165" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="346" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="444" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58626" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="768" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E725226" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56584" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTAAGACACACACCTCTCGCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTT</genome_strand>
        <mrna_strand>AATTGAAGACACACACCTCCCTTAAAAAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAACCCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAAAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317513" ref_strand="+" ref_description="SGN-E317513 [cTOB-17-M11]">
      <seq>acacacctctcgccggtagccgttactcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="56294" stop="58502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56594" g_stop="56655" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="140" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="321" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58202" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="408" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E317513" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56594" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACACCTCTCGCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATG</genome_strand>
        <mrna_strand>ACACACCTCTCGCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E335435" ref_strand="+" ref_description="SGN-E335435 [cTOE-2-D24]">
      <seq>acacctctcgccggtagccgttactcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="56296" stop="58525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56596" g_stop="56655" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="138" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="319" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="417" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58314" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="429" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E335435" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56596" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCTCTCGCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGT</genome_strand>
        <mrna_strand>ACACCTCTCGCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E709191" ref_strand="+" ref_description="SGN-E709191 [FA42DH07]">
      <seq>cgctctcgccggtagccgttactcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcagtcagctacagctgcttaaaatgtctaggttggacttatgatgaatttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="56300" stop="59069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56598" g_stop="56655" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="136" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="317" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="415" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58769" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="882" r_length="467" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E709191" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56598" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTCTCGCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAAC</genome_strand>
        <mrna_strand>CGCTCTCGCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726342" ref_strand="+" ref_description="SGN-E726342 [LA11CB11]">
      <seq>acctctcgccggtagccgttactcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaagggtaaaggtattcagttatctatcattgaagaggctcgcaagaggatggctgctcagtcagctacagctgcttaaaatgtctaggttggacttatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="56298" stop="59060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56598" g_stop="56655" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="136" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="317" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="415" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58760" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="873" r_length="458" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E726342" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56598" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTCTCGCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGAT</genome_strand>
        <mrna_strand>ACCTCTCGCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATTCAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730233" ref_strand="+" ref_description="SGN-E730233 [LA23CA05]">
      <seq>tctcgtcggtagccgttactcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaanggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcagtcagctacagctgcttaaaatgtctagggtggacttatgatgaatttaacaggttgggccatgattctccctgtttaaagatacaatctcattttgtatgttgaattttagcaaatttgtatttggaaccgtttaactttgttttgttgggaaaatagtttgactgagtttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="56301" stop="59196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56601" g_stop="56655" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="133" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="314" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="412" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58895" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="1003" r_length="591" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1004" polyA_stop="1014"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E730233" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>1005</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56601" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTAGAGATACCAATCTCATTTTGTATGTTGAATTTTAGCAATTTTGTATTTGGTACCGTTTAACTTTGTTTTGTTGGGAAAATAGGTTTGACTGAGTTTAAG</genome_strand>
        <mrna_strand>TCTCGTCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAANGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGGTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCCCTGTTTAAAGATA-CAATCTCATTTTGTATGTTGAATTTTAGCAAATTTGTATTTGGAACCGTTTAACTTTGTTTTGTTGGGAAAATA-GTTTGACTGAGTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E324704" ref_strand="+" ref_description="SGN-E324704 [cTOC-8-G18]">
      <seq>gctcgccggtagccgttactcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="56302" stop="58506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56601" g_stop="56655" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="133" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="314" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58206" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="405" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E324704" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56601" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGA</genome_strand>
        <mrna_strand>GCTCGCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288276" ref_strand="+" ref_description="SGN-E288276 [cLES-16-H1]">
      <seq>ctcgccgttagccgttactcgccgcagctaataagtctgtaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgtagacgtaccgtgaggtcatttctatcttgatgcagcgccaagatatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgtaggtactattccaaagacgaatgagagcttcccacttttttatgacactaaaggtcggttacgtctccactcactcagagatgaggaagccaaattcaaactttgtgaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatgcgctaccctgatcccctcatcaaggccgatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="56302" stop="58771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56602" g_stop="56655" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.907"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="133" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="314" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="412" r_length="98" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58471" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="581" r_length="169" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E288276" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56602" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTC-GGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATG</genome_strand>
        <mrna_strand>CTCGCCGTTAGCCGTTACTCGCCGCAGCTAATAAGTCTGTAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTAGACGTACCGTGAGGTCATTTCTATCTTGATGCAGCGCCAAGATATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTAGGTACTATTCCAAAGACGAATGAGAGCTTCCCACTTTTTTATGACACTAAAGGTCGGTTACGTCTCCACTCACTCAGAGATGAGGAAGCCAAA.........................................................................................TTCAAACTTTGTGAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATGCGCTACCCTGATCCCCTCATCAAGGCCGATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E441157" ref_strand="+" ref_description="SGN-E441157 [cSTA-29-K8]">
      <seq>ctcgccggtagccgtcactcgtgccagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgccgaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttgaaactttgtaaggttcgatcagtgcagtttggacagaaagggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagcttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="46346" stop="58731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56602" g_stop="56655" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="132" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="313" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="411" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58431" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="540" r_length="129" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E441157" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56602" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGAC</genome_strand>
        <mrna_strand>CTCGCCGGTAGCCGTCACTCGTGCCAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCGAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTGAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAAGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E439817" ref_strand="+" ref_description="SGN-E439817 [cSTA-13-L17]">
      <seq>ctcgccggtagccgtcactcgtggcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgccttgataaacttggaggtgccttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaatgggatcccatatctcaacacttatgatggaagaacaatccgctaccctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="46346" stop="58694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56602" g_stop="56655" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="134" r_length="80" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="315" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="413" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58394" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="505" r_length="92" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E439817" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56602" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATG-CTTGATAAACTTGGAGGTG-CTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGA</genome_strand>
        <mrna_strand>CTCGCCGGTAGCCGTCACTCGTGGCAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCCTTGATAAACTTGGAGGTGCCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAATGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E438549" ref_strand="+" ref_description="SGN-E438549 [cSTA-8-L5]">
      <seq>ctcgccggtagccgtcactcgtggcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="46346" stop="58676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56602" g_stop="56655" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="132" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="313" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="411" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58376" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="485" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E438549" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56602" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAG</genome_strand>
        <mrna_strand>CTCGCCGGTAGCCGTCACTCGTGGCAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E473271" ref_strand="+" ref_description="SGN-E473271 [cSTB-31-D18]">
      <seq>ctcgccggtagccgtcactcgtggcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="46346" stop="58639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56602" g_stop="56655" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="132" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="313" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="411" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58339" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="448" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E473271" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56602" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGAC</genome_strand>
        <mrna_strand>CTCGCCGGTAGCCGTCACTCGTGGCAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E730836" ref_strand="+" ref_description="SGN-E730836 [LA25BD07]">
      <seq>ccctgtagccgttactcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaagctcgcaagaggatggctgctcagtcagctacagctgcttaaaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="56306" stop="59042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56605" g_stop="56655" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="129" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="310" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="408" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58742" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="848" r_length="440" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E730836" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56605" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGT</genome_strand>
        <mrna_strand>CCCTGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAAGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261871" ref_strand="+" ref_description="SGN-E261871 [cLEG-61-P17]">
      <seq>gccggtagccgttactcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgntcactcttggcaagggtagaaagccatgggtgtctctacctaagggtaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="56305" stop="58969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56605" g_stop="56655" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="129" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="310" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="408" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58669" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="775" r_length="367" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E261871" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56605" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAG</genome_strand>
        <mrna_strand>GCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGNTCACTCTTGGCAAGGGTAGAAAGCCATGGGTGTCTCTACCTAAGGGTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E579372" ref_strand="+" ref_description="SGN-E579372 [87355]">
      <seq>gcacgagggtcactcgtggcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaacagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="46360" stop="58894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56605" g_stop="56655" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.843"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.84"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="127" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="308" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="406" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58594" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="698" r_length="292" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E579372" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E579372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56605" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGT</genome_strand>
        <mrna_strand>GCACG-AG-GGTCACTCGTGGCAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAACAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314844" ref_strand="+" ref_description="SGN-E314844 [cTOA-20-J16]">
      <seq>gccggtagccgttactcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="56305" stop="58795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56605" g_stop="56655" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="129" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="310" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="408" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58495" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="601" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E314844" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56605" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTG</genome_strand>
        <mrna_strand>GCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E468400" ref_strand="+" ref_description="SGN-E468400 [cSTB-3-F23]">
      <seq>gccggtagccgtcactcgtggcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="46349" stop="58787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56605" g_stop="56655" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="129" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="310" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="408" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58487" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="593" r_length="185" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E468400" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56605" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCAT</genome_strand>
        <mrna_strand>GCCGGTAGCCGTCACTCGTGGCAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288725" ref_strand="+" ref_description="SGN-E288725 [cLES-8-P9]">
      <seq>gccggtagccgttactcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaagggatcccatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="56305" stop="58656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56605" g_stop="56655" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="129" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="310" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="408" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58356" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="462" r_length="54" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E288725" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56605" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATAT</genome_strand>
        <mrna_strand>GCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAAGGGATCCCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286682" ref_strand="+" ref_description="SGN-E286682 [cLES-14-I13]">
      <seq>gccggtagccgttactcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="56305" stop="58630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56605" g_stop="56655" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="129" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="310" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="408" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58330" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="436" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E286682" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56605" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGC</genome_strand>
        <mrna_strand>GCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E445552" ref_strand="+" ref_description="SGN-E445552 [cSTA-45-P18]">
      <seq>gccggtagccgtcactcgtggcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="46349" stop="58525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56605" g_stop="56655" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="129" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="310" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="408" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58314" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="420" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E445552" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56605" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGT</genome_strand>
        <mrna_strand>GCCGGTAGCCGTCACTCGTGGCAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E255993" ref_strand="+" ref_description="SGN-E255993 [cLEG-35-M24]">
      <seq>gccggtagccgttactcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="56305" stop="58502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56605" g_stop="56655" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="129" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="310" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58202" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="397" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E255993" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56605" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATG</genome_strand>
        <mrna_strand>GCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367493" ref_strand="+" ref_description="SGN-E367493 [cLPT-7-M21]">
      <seq>gccggtagccgtcactcgccgcagctaatcagtcggaaaactgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaaaacgaatgagagcttccgacttcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="56305" stop="58461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56605" g_stop="56655" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="129" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="310" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58161" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="356" r_length="46" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E367493" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56605" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTA</genome_strand>
        <mrna_strand>GCCGGTAGCCGTCACTCGCCGCAGCTAATCAGTCGGAAAACTGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAAACGAATGAGAGCTTCCGACTTCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E452354" ref_strand="+" ref_description="SGN-E452354 [cSTS-16-D21]">
      <seq>ccggtagccgtcactcgtggcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagaacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggtcatggttacctggtggtagaaacagggggcgtgttggaattcttaagaacagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="46350" stop="58908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56606" g_stop="56655" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="128" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="310" r_length="182" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="408" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58608" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="715" r_length="307" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E452354" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56606" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAG-ACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTA-CTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTG</genome_strand>
        <mrna_strand>CCGGTAGCCGTCACTCGTGGCAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGAACTTACCCTGCCGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTCATGGTTACCTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAACAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E313787" ref_strand="+" ref_description="SGN-E313787 [cTOA-17-H8]">
      <seq>ccggtagccgttactcgctttttctaatcagtcggaaaaccgccaaaatgggaagagggtggaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagacacaggggacgtgttggaattcttaagaacagggagaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42472" stop="58844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56606" g_stop="56655" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="128" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="309" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="407" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58544" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="649" r_length="242" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E313787" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56606" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCA</genome_strand>
        <mrna_strand>CCGGTAGCCGTTACTCGCTTTTTCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGAGGGTGGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGACACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E591732" ref_strand="+" ref_description="SGN-E591732 [45451]">
      <seq>cggtagccgtcactcgtggcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaacagagagaagcacaagggtagctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="46351" stop="58858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56607" g_stop="56655" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="127" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="308" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="406" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58558" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="662" r_length="256" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E591732" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56607" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTG</genome_strand>
        <mrna_strand>CGGTAGCCGTCACTCGTGGCAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAACAGAGAGAAGCACAAGGGTAGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209270" ref_strand="+" ref_description="SGN-E209270 [cLEC-53-M10]">
      <seq>cggtagccgttactcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="56307" stop="58523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56607" g_stop="56655" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="127" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="308" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="406" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58311" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="415" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E209270" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56607" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTT</genome_strand>
        <mrna_strand>CGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347078" ref_strand="+" ref_description="SGN-E347078 [cTOF-25-D20]">
      <seq>gtagccgttactcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="56309" stop="58806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56609" g_stop="56655" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="125" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="306" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="404" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58506" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="608" r_length="204" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E347078" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56609" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAAC</genome_strand>
        <mrna_strand>GTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311066" ref_strand="+" ref_description="SGN-E311066 [cLEZ-17-H20]">
      <seq>gtagccgttactcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="56309" stop="58725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56609" g_stop="56655" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="125" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="306" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="404" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58425" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="527" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E311066" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56609" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAG</genome_strand>
        <mrna_strand>GTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E561316" ref_strand="+" ref_description="SGN-E561316 [17288]">
      <seq>ccgtcactcgtggcagctaatcagtcggaaaaccgncaaaacggcaagaggtttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaacagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="56313" stop="58927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56613" g_stop="56655" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.884"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="121" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="302" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="400" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58627" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="725" r_length="325" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E561316" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56613" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTG</genome_strand>
        <mrna_strand>CCGTCACTCGTGGCAGCTAATCAGTCGGAAAACCGNCAAAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGTTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAACAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E450717" ref_strand="+" ref_description="SGN-E450717 [cSTS-10-O11]">
      <seq>cgtcactcgtggcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggtcatggttactggtggtagaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="46358" stop="58806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56614" g_stop="56655" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.93"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="120" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="301" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="399" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58506" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="603" r_length="204" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E450717" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56614" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAAC</genome_strand>
        <mrna_strand>CGTCACTCGTGGCAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700791" ref_strand="+" ref_description="SGN-E700791 [FA14AF12]">
      <seq>gttactcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgctttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcagtcagctacagctgcttaaaatgtctaggttggacttatgatgaatttaacaggttgggccatgattctcactgtttagagataccaatctcaattttgaatgtgaatttagcaattttgtatttggtaccgtttaactttgttttgttgggaaaataggtttgactgagtttaaaatcattcatttgctttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="56315" stop="59214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56615" g_stop="56655" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="118" r_length="77" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="299" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="397" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58913" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="1007" r_length="610" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1008" polyA_stop="1018"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E700791" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1009</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56615" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTAGAGATACCAATCTC-ATTTTGTATGTTGAATTTTAGCAATTTTGTATTTGGTACCGTTTAACTTTGTTTTGTTGGGAAAATAGGTTTGACTGAGTTTAAGATCATTCATTTGCTTTTT</genome_strand>
        <mrna_strand>GTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGC-TTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTAGAGATACCAATCTCAATTTTGAATG-TGAA-TTTAGCAATTTTGTATTTGGTACCGTTTAACTTTGTTTTGTTGGGAAAATAGGTTTGACTGAGTTTAAAATCATTCATTTGCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E558299" ref_strand="+" ref_description="SGN-E558299 [17618]">
      <seq>gtcactcgtggcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttggatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgtaccctgatcccctcatcaaggccaatgacactatcaagcttgacttaattccaataagattgttgacttcatcaaatttgatgttggaaatgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="46360" stop="58783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56615" g_stop="56655" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.93"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="119" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="301" r_length="182" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="399" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58483" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="578" r_length="179" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E558299" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56615" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTT-GATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGG</genome_strand>
        <mrna_strand>GTCACTCGTGGCAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCG-TACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTA-ATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E469697" ref_strand="+" ref_description="SGN-E469697 [cSTB-13-B24]">
      <seq>gtcactcgtggcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattccaataagattgttgactttcatcaaattgatgttggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="46360" stop="58779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56615" g_stop="56655" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.93"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="119" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="300" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="398" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58479" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="575" r_length="177" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E469697" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56615" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGAC-TTCATCAAGTTTGATGTTGGAAAT</genome_strand>
        <mrna_strand>GTCACTCGTGGCAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCCAATAAGATTGTTGACTTTCATCAA-ATTGATGTTGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E416946" ref_strand="+" ref_description="SGN-E416946 [STM-24-I17]">
      <seq>gtcactcgtggcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagcttgacttagattccaataagattgttgacttcatcaaatttgatgttggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="46360" stop="58779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56615" g_stop="56655" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.93"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="119" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="300" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="398" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58479" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="575" r_length="177" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E416946" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E416946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56615" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAAT</genome_strand>
        <mrna_strand>GTCACTCGTGGCAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTTGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E248437" ref_strand="+" ref_description="SGN-E248437 [cLEF-59-D23]">
      <seq>tcactcgtggcagctaatcagtcggaaaacccgcggaaaggggggagggttgaagaaaaatttgaagagggtcaatgccgccctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaaccaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="56315" stop="58704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56616" g_stop="56655" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.800"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.80"/>
            <acceptor a_prob="0.996" a_score="0.81"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="120" r_length="80" r_score="0.885"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="302" r_length="182" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="400" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58404" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="502" r_length="102" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E248437" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56616" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATG-CG-CCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAA-CAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATC</genome_strand>
        <mrna_strand>TCACTCGTGGCAGCTAATCAGTCGGAAAACCCGCGGAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGGAGGGTTGAAGAAAAATTTGAAGAGGGTCAATGCCGCCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACCAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336578" ref_strand="+" ref_description="SGN-E336578 [cTOE-4-C6]">
      <seq>ttactcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtnnntttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaagggatcccatatctcaacactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="56316" stop="58666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56616" g_stop="56655" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="118" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="299" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="397" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58366" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="461" r_length="64" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E336578" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56616" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTT</genome_strand>
        <mrna_strand>TTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTNNNTTT...............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAAGGGATCCCATATCTCAACACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E693078" ref_strand="+" ref_description="SGN-E693078 [LH_Ea10G04]">
      <seq>ttctcgccgcagctaatcagtcggaaaactgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgactactttatgacactaagggtcgcttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaatacttatgatggaagaacaatccgctaccctgaccccctcatcaaggctaatgacaccatcaagcttgacttagattccaacaagattgttgacttcatcaaatttgatgttggaaatgtcgtcatggttactggtggtagaaataggggacgtgttggaattcttaagaatagggagaagcacaagggtagctttgagacagttcacattcaagactccctgggccacgagtttgctactcgtttgggccatgtgttcactcttggcaagggtagtaagccatgggtgtctcctacctaagggtaaaggtatcaagttatctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="56317" stop="58985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56617" g_stop="56655" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="117" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="298" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="396" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58685" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="780" r_length="384" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E693078" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56617" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCT-CTACCTAAGGGTAAAGGTATCAAGTTATCTAT</genome_strand>
        <mrna_strand>TTCTCGCCGCAGCTAATCAGTCGGAAAACTGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTACTTTATGACACTAAGGGTCGCTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGACCCCCTCATCAAGGCTAATGACACCATCAAGCTTGACTTAGATTCCAACAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTCGTCATGGTTACTGGTGGTAGAAATAGGGGACGTGTTGGAATTCTTAAGAATAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGCCACGAGTTTGCTACTCGTTTGGGCCATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCCTACCTAAGGGTAAAGGTATCAAGTTATCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E592298" ref_strand="+" ref_description="SGN-E592298 [46029]">
      <seq>cactcgtggcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaacagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtgtctctacctaagggtaaggtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="46361" stop="58974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56617" g_stop="56655" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="117" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="298" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="396" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58674" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="767" r_length="371" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E592298" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E592298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56617" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATC</genome_strand>
        <mrna_strand>CACTCGTGGCAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAACAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGT-AAGGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E575732" ref_strand="+" ref_description="SGN-E575732 [35403]">
      <seq>ctcgtggcagctaatcagtctggaaaaccgccaaaatggcaagagggttgcaaagaaacatttgagagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagcaacagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatggtgtgtctctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="46363" stop="58957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56619" g_stop="56655" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.892"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="119" r_length="81" r_score="0.923"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="300" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="398" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58657" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="755" r_length="357" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E575732" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E575732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56619" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCCGCAGCTAATCAGTC-GGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTG--AAGAAACATTTGA-AGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAG-AACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGG-GTGTCTCTAC</genome_strand>
        <mrna_strand>CTCGTGGCAGCTAATCAGTCTGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGCAAAGAAACATTTGAGAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGCAACAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGTGTGTCTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E305936" ref_strand="+" ref_description="SGN-E305936 [cLEY-17-P6]">
      <seq>ctcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="56319" stop="58787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56619" g_stop="56655" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="115" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="296" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="394" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58487" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="579" r_length="185" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E305936" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56619" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCAT</genome_strand>
        <mrna_strand>CTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213615" ref_strand="+" ref_description="SGN-E213615 [cLEC-76-M17]">
      <seq>tcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="56320" stop="58903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56620" g_stop="56655" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="114" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="295" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="393" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58603" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="694" r_length="301" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E213615" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56620" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTC</genome_strand>
        <mrna_strand>TCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285017" ref_strand="+" ref_description="SGN-E285017 [cLER-19-B15]">
      <seq>tcgccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgagaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctacactcactcagagatgaggaagccaagttcagactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="56320" stop="58699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56620" g_stop="56655" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="114" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="295" r_length="181" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="393" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58399" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="490" r_length="97" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E285017" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56620" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCC</genome_strand>
        <mrna_strand>TCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGAGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAGACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E705872" ref_strand="+" ref_description="SGN-E705872 [FA28BE08]">
      <seq>gccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcagtcagctacagctgctaaaaatgtctaggttggacttatgatgaatttaacaggttgggccatgattctcactgttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="56322" stop="59096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56622" g_stop="56655" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="112" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="293" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="391" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58796" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="885" r_length="494" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E705872" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>885</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56622" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTA</genome_strand>
        <mrna_strand>GCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTAAAAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332333" ref_strand="+" ref_description="SGN-E332333 [cTOD-17-D10]">
      <seq>ccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="56323" stop="58902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56623" g_stop="56655" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="111" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="292" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="390" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58602" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="690" r_length="300" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E332333" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56623" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACT</genome_strand>
        <mrna_strand>CCGCAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E728902" ref_strand="+" ref_description="SGN-E728902 [LA19BC12]">
      <seq>ccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttatattcgaacaagattgttgacttcatcaagtatgatgttggaaatgtggtcatggttactggagggagaaacagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="56323" stop="58811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56623" g_stop="56655" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="111" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="292" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="390" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58511" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="599" r_length="209" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E728902" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56623" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGG</genome_strand>
        <mrna_strand>CCGCAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTATATTCGAACAAGATTGTTGACTTCATCAAGTATGATGTTGGAAATGTGGTCATGGTTACTGGAGGGAGAAACAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E256624" ref_strand="+" ref_description="SGN-E256624 [cLEG-38-J4]">
      <seq>ccgcagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatgggtaagaacagctccattagattgttttttcatttcataatctttagatttttgttctccttatttctgtgctgcttaagtttgttttcttagtgattcatctatacacatggtttcacagttccgaagacaattgttgatcagattgtctacaagttttttcatcaaaaaccattgtctcgtgtcctttttcttctttgttctcttgttgctatgtttgttgaattacttgataaattggtaatgctgttattttgtttgtgtagatgttgttactattccaaagacgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="56323" stop="58442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56623" g_stop="56655" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="111" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="58142" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="584" r_length="473" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E256624" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56623" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="58142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATG</genome_strand>
        <mrna_strand>CCGCAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAAGTTTGTTTTCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGTTTTTTCATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTACTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476866" ref_strand="+" ref_description="SGN-E476866 [cSTB-46-M13]">
      <seq>ggcagctattcaatcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacacaaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacttaccctgctggtttcatggatgttgttacgattccaaagacgaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatctgtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagctggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="56325" stop="58731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56624" g_stop="56655" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="110" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="291" r_length="181" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="389" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58431" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="518" r_length="129" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E476866" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56624" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGAC</genome_strand>
        <mrna_strand>GGCAGCTATTCAATCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCAAAGACGAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCTGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476861" ref_strand="+" ref_description="SGN-E476861 [cSTB-46-M3]">
      <seq>ggcagctattcaatcggaaaaccgccaaaatggccagagggttgaagaaacatttgaagaggctcaatgcgcctaatcattggatgcttgataaactcggaggtgcttttgctcccaagccttcttatggtccacacaaatcaaaggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgagaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacttaccctgctggtttcatggatgttgttacgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="56325" stop="58152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56624" g_stop="56655" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="110" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="291" r_length="181" r_score="0.945"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58130" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="306" r_length="15" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E476861" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56624" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTC</genome_strand>
        <mrna_strand>GGCAGCTATTCAATCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAATCATTGGATGCTTGATAAACTCGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTATGGTCCACACAAATCAAAGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGAGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E459087" ref_strand="+" ref_description="SGN-E459087 [cPRO-33-E16]">
      <seq>cagctaatcagtcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaacagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="56326" stop="58989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56626" g_stop="56655" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="108" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="289" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="387" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58689" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="774" r_length="387" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E459087" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56626" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTAATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATT</genome_strand>
        <mrna_strand>CAGCTAATCAGTCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAACAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E611636" ref_strand="+" ref_description="SGN-E611636 [61390]">
      <seq>attcaatcgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgtaatgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52913" stop="58526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56631" g_stop="56655" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.880"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="103" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="284" r_length="181" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="382" r_length="98" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58312" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="392" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E611636" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E611636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56631" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTT</genome_strand>
        <mrna_strand>ATTCAATCGGGAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.........................................................................................................................................................................................................................................................................ATGTTGTAATGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E446302" ref_strand="+" ref_description="SGN-E446302 [cSTA-20-L17]">
      <seq>attcaatcggaaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcatctggtccacacaaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttacgattccaaagacgaatgagagcttccgacttctttatgacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="42477" stop="58468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56631" g_stop="56655" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="103" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="284" r_length="181" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58168" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="337" r_length="53" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E446302" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56631" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACT</genome_strand>
        <mrna_strand>ATTCAATCGGAAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCATCTGGTCCACACAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACGATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E441527" ref_strand="+" ref_description="SGN-E441527 [cSTA-30-D12]">
      <seq>ttcaatcgggaaaccgccaaaatggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacacaaatcaagggaatgtttgccattagttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgtaatgattccgaagactaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgcaaggttcgatctgtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaagccaatgacaccatcaagctggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="52913" stop="58731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56632" g_stop="56655" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="102" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="283" r_length="181" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="381" r_length="98" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58431" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="510" r_length="129" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E441527" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56632" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGTCGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGAC</genome_strand>
        <mrna_strand>TTCAATCGGGAAACCGCCAAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACACAAATCAAGGGAATGTTTGCCATTAGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.........................................................................................................................................................................................................................................................................ATGTTGTAATGATTCCGAAGACTAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGCAAGGTTCGATCTGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAAGCCAATGACACCATCAAGCTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306030" ref_strand="+" ref_description="SGN-E306030 [cLEY-17-P18]">
      <seq>cggaaaaccgcccaaatggcaggagggtggaagaaacatttgaagaggctcaatgcgcctaaacattggatgcttgataaacttggaggggcttttgctcccaagccttcctctggtgcacataaatcaagggaatgtttgccattggttattatcctgaggaacaagttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaatggtcggttccgtctccactcactcatagatgaggaagccaagttcaaactttgtaaggttcgatcagggcaatttggacagaaagggatcccatatctcaacacttatgatggaagaacaatcccgtaccctgatcccctcatcaaggccaatgacactatcaagcttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43246" stop="58731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56638" g_stop="56655" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57497" g_stop="57574" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="96" r_length="78" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="277" r_length="181" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="375" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58303" g_stop="58431" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="504" r_length="129" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E306030" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56638" e_stop="56655"/>
          <exon e_start="57497" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAAACCGCCAAAATGGTTAGTTTTCTCTCTCTGTTAATTCATCTCGTCAATTTTGTTTAGCTTGTTATTTGTTGCCTGATAGATCAGTTGTATTTTAGTCTTCATGGCTTTTGTTCCAGGTCTACACTGTACTGTATTAGTTATACCTTTGCTAATTGCTTGCTATATGTGTAATTCATCTAATTCTTGGCTGTTCCTTTCGATTTATGCGCTCAAATGTATGTGTTGATCTCAAGTGGTGCTGGTTAATTTTAAGGCTCGTATGTGTAAATAATCAATTACATTAGTTACTGTCGCCATTAGATATTAGTGTATACTGCTTTTTTAGTTGTATTTTGCTGTCATTTTGATTGCTATTGCACTCTATGTTGTACTGTATCATACTGTTTTAATGAATTCAACATTTGGAAAGATTTTATGGTTCTACAGTTAGAGCTACTTTAATAAGTTGATTTTAGTACAAAATAATATTACTAAATAATTAGTAAAGAAATAGTGAGAAATTAAATAAATCGGACGAAATTGGTCGTTACACAAGGTGAGTTGGTGAGATGAGACGGATACCTAACTGTTCTTTTAATGATAGCTTAAGATTTGGACAGTGAAATTGTGTAATATTGTTCAAGTTGTTGACGTATTGAAAAATTGTTCTTTACGCTTGTGAAAGAACATGCATCTAGCGTTGTTTAACATAGATAGATTATAATAAAAAGCTGTGGAATAGCTCCCCTTTTTCTTTTTGGTTAAGTGACTTTTGTTCTTTCAGCTTTCATTTATATAAGTGGTAATATTTTTGCATTTAGGCTTTGGAAACATCATACTAAAGTGAATTGTGTAACTTCTTGTCCATATATAGGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGAC</genome_strand>
        <mrna_strand>CGGAAAACCGCCCAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAGGGTGGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAACATTGGATGCTTGATAAACTTGGAGGGGCTTTT...............................................................................................GCTCCCAAGCCTTCCTCTGGTGCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAAGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAATGGTCGGTTCCGTCTCCACTCACTCATAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGGGCAATTTGGACAGAAAGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCCGTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E567562" ref_strand="+" ref_description="SGN-E567562 [11707]">
      <seq>ggcaagagggttgaagaaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaaggggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagcttgacttagattccaataagattgttgacttcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43257" stop="58761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57496" g_stop="57574" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="261" r_length="182" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="359" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58303" g_stop="58461" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="518" r_length="159" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E567562" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E567562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57496" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAA-GGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATC</genome_strand>
        <mrna_strand>GGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTTGACTTAGATTCCAATAAGATTGTTGACTTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E326441" ref_strand="+" ref_description="SGN-E326441 [cTOC-14-B20]">
      <seq>ggcaagagggctgaacaaacatttgaagaggctcaatgcgcctaatcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaaaggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgagaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttatggacagataagacttaccctgctggtttcatggatgttgtcactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcatagatgaggaagccaagttcaaactttgtaaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43257" stop="58525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57496" g_stop="57574" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="261" r_length="182" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="359" r_length="98" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58303" g_stop="58319" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="376" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E326441" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57496" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTA-GGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGT</genome_strand>
        <mrna_strand>GGCAAGAGGGCTGAACAAACATTTGAAGAGGCTCAATGCGCCTAATCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAAGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGAGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTATGGACAGATAAGACTTACCCTGCTGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTCACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCATAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E710491" ref_strand="+" ref_description="SGN-E710491 [FA55CD07]">
      <seq>aaacatttgaagaggctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggtaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaagatggctgctcagtcagctacagctgcttaaaatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43273" stop="59044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57512" g_stop="57574" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="244" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="342" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58303" g_stop="58744" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="784" r_length="442" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E710491" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57512" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCT</genome_strand>
        <mrna_strand>AAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGTAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAAGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341721" ref_strand="+" ref_description="SGN-E341721 [cTOF-9-L23]">
      <seq>ctcaatgcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcccaagggtagctttgagacagttcacattcaggactccctgtggcacgagtttgctactcgtctgggcaatgtgttcactcttggcacgggtagtaagccatggggtgtctctacctaagggtaaaggtatcaagttatctatcattgaacaggctcgcaagaggatggctgctcagtcagctacagctgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43288" stop="59035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57527" g_stop="57574" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="229" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="327" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58303" g_stop="58735" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="761" r_length="434" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E341721" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57527" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCAT-GGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTT</genome_strand>
        <mrna_strand>CTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCCCAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGTGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCACGGGTAGTAAGCCATGGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAACAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E255625" ref_strand="+" ref_description="SGN-E255625 [cLEG-36-F7]">
      <seq>tgcgcctaagcattggatgcttgattaacttggaagtgcttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaagttgaaatatgcgttgacgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatggatgttgttactattccaaagacgaatgagagcttccgacttctttatgacactaaaggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaagccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaacaggggacgtgttggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43293" stop="58823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57532" g_stop="57574" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="0.95"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="224" r_length="181" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="322" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58303" g_stop="58523" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="543" r_length="221" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E255625" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57532" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAAT</genome_strand>
        <mrna_strand>TGCGCCTAAGCATTGGATGCTTGATTAACTTGGAAGTGCTTTT...............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAAGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAAGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAAGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E570760" ref_strand="+" ref_description="SGN-E570760 [15395]">
      <seq>gcgcctaagcattggatgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggacaggaagggaatcccatatctcaacacttatgatggaagaacaatccgtaccctgatcccctcatcaagggccaatgacaccatcaagcttgacttagattccaataagattgtttgacttcatcaaatttgatgttggaaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43294" stop="58781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57533" g_stop="57574" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="223" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="321" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58303" g_stop="58481" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="502" r_length="181" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E570760" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E570760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57533" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACA-GAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAA-GGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTG-TTGACTTCATCAAGTTTGATGTTGGAAATGT</genome_strand>
        <mrna_strand>GCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCG-TACCCTGATCCCCTCATCAAGGGCCAATGACACCATCAAGCTTGACTTAGATTCCAATAAGATTGTTTGACTTCATCAAATTTGATGTTGGAAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E560893" ref_strand="+" ref_description="SGN-E560893 [20618]">
      <seq>atgcttgataaacttggaggtgcttttgctcccaagccttcttctggtccacataaatcaagggaatgtttgccattggttattatcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagcttgacttaattccaataagattgttgacttcatcaaatttgatgttggaaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaacagagagaagcacaagggtagctttgagacagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43309" stop="58866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57548" g_stop="57574" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57670" g_stop="57850" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="208" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="306" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58303" g_stop="58566" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="569" r_length="263" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E560893" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57548" e_stop="57574"/>
          <exon e_start="57670" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTT</genome_strand>
        <mrna_strand>ATGCTTGATAAACTTGGAGGTGCTTTT...............................................................................................GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCCGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTTGACTTA-ATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAACAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E254604" ref_strand="+" ref_description="SGN-E254604 [cLEG-29-A9]">
      <seq>cttttgctcccaagccttcctctggtccacataaatcaagggaatgtttgccattggttattatcctgaggaacaggttgaaatatgcgttgaccgtaccgtgaggtcatttctatcttgatgcaacgccaagttatggttgatgggaaagttaggacagataagacttaccctgctggtttcatgggtaagaacagctccattagattgttttttcatttcataatctttagatttttgttctccttatttctgtgctgcttaggtttgttttcttagtgattcatctatacacatggtttcacagttccgaagacaattgttgatcagattgtctacaagttttttcatcaaaaaccattgtctcgtgtcctttttcttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="57370" stop="58348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57570" g_stop="57574" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57670" g_stop="58048" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="385" r_length="380" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E254604" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57570" e_stop="57574"/>
          <exon e_start="57670" e_stop="58048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTGTAAGTGACATGTCTTTCCCTATAGTCTTTTTTTTGATAGTACTACTTAGTTTCCTCCTCCTTGACTTTACTCTTCTCCTTTGTTTCTACTGCAGGCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGA-CGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTT</genome_strand>
        <mrna_strand>CTTTT...............................................................................................GCTCCCAAGCCTTCCTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACCGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTTTCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGTTTTTTCATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E558364" ref_strand="+" ref_description="SGN-E558364 [17692]">
      <seq>atcctcaggaacaggttgaaatatgctttgacataccgtgaggtcatttcaatcttgatgcaacgacaagttatggttgatgggaaaattaggacagataagacctatcctgctggttttatggatgttgtaatgattccgaagactaatgagagcttccgacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="43487" stop="58457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57727" g_stop="57850" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58116" g_stop="58157" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="166" r_length="42" r_score="0.881"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E558364" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>166</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57727" e_stop="57850"/>
          <exon e_start="58116" e_stop="58157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTC</genome_strand>
        <mrna_strand>ATCCTCAGGAACAGGTTGAAATATGCTTTGACATACCGTGAGGTCATTTCAATCTTGATGCAACGACAAGTTATGGTTGATGGGAAAATTAGGACAGATAAGACCTATCCTGCTGGTTTTATGG.........................................................................................................................................................................................................................................................................ATGTTGTAATGATTCCGAAGACTAATGAGAGCTTCCGACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E561782" ref_strand="-" ref_description="SGN-E561782 [19143]">
      <seq>aagacttaccctgccggtttcatggatgttgttactattccaaagacaaatgagagtttccgacttctttatgacactaaggntcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagcttgacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaacagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttgtctatcattgaagaggctcgcaagaggatggctactcaatcagctacaactgcttaaaaatgatagcttgaacttgtgataaatttaacaggttggaccatgtctaccaatcttattctgtatgttggattttaacatttttgtactcggtaccgtttaactttgttttgttgggaaaagaggttgactgagtttaagatcattcatttgctttttataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="47851" stop="59215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57826" g_stop="57850" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="123" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58303" g_stop="58915" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="719" r_length="596" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="720" polyA_stop="753"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E561782" ref_strand="-">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561782" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="57826" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTAGAGATACCAATCTCATTTTGTATGTTGAATTTTAGCAATTTTGTATTTGGTACCGTTTAACTTTGTTTTGTTGGGAAAATAGGTTTGACTGAGTTTAAGATCATTCATTTGCTTTTTAT</genome_strand>
        <mrna_strand>AAGACTTACCCTGCCGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGNTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTTGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAACAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTGTCTATCATTGAAGAGGCTCGCAAGAGGATGGCTACTCAATCAGCTACAACTGCTTAAAAATGATAGCTTGAACTTGTGATAAATTTAACAGGTT--G----GA--C-CA-TG--T----CTACCAATCTTATTCTGTATGTTGGATTTTAACATTTTTGTACTCGGTACCGTTTAACTTTGTTTTGTTGGGAAAAGAGG-TTGACTGAGTTTAAGATCATTCATTTGCTTTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577655" ref_strand="-" ref_description="SGN-E577655 [LE15BD05]">
      <seq>gctggtttcatggatgttgtactatttccaaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcagtcagctacagctgcttaaaatgtctaggttggacttatgatgaatttaacaggttgggccatgattctcactgtttagagataccaatctcattttgtatgttgaattttagcaattttgtatttggtaccgtttaactttgttttgttgggaaaataggtttgactgagtttaagatcattcatttgcttttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="57813" stop="59214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57838" g_stop="57850" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="111" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58303" g_stop="58919" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="728" r_length="617" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E577655" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577655" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="57838" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTA-TTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTAGAGATACCAATCTCATTTTGTATGTTGAATTTTAGCAATTTTGTATTTGGTACCGTTTAACTTTGTTTTGTTGGGAAAATAGGTTTGACTGAGTTTAAGATCATTCATTTGCTTTTTATGTGA</genome_strand>
        <mrna_strand>GCTGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTG-TACTATTTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTAGAGATACCAATCTCATTTTGTATGTTGAATTTTAGCAATTTTGTATTTGGTACCGTTTAACTTTGTTTTGTTGGGAAAATAGGTTTGACTGAGTTTAAGATCATTCATTTGCTTTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E600505" ref_strand="-" ref_description="SGN-E600505 [53517]">
      <seq>gccggtttcatggatgtttgttactattccaatgacaaatgagagtttccgacttctttaggacactaagggtcggttccgtctccactcactcagagatgaggaggccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaagggaatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacaccatcaagcttgacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggtcatggttactggtggtagaaacagggggcgtgttggaattcttaagaacagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttggggaatgtgttcactcttggtaaaggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttgtctatcattgaagaggctcgcaagaggatggctactcaatcagctacaactgcttaaaaatgatagcttgaacttgtgataaatttaacaggttggaccatgtctaccaatcttattctgtatgttggattttaacatttttgtactcggtaccgtttaactttgttttgttgggaaaagaggttgactgagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="47851" stop="59191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57838" g_stop="57850" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58116" g_stop="58213" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="112" r_length="99" r_score="0.929"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58303" g_stop="58891" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="684" r_length="572" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E600505" ref_strand="-">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.023" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E600505" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="57838" e_stop="57850"/>
          <exon e_start="58116" e_stop="58213"/>
          <exon e_start="58303" e_stop="58891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATG-TTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTAGAGATACCAATCTCATTTTGTATGTTGAATTTTAGCAATTTTGTATTTGGTACCGTTTAACTTTGTTTTGTTGGGAAAATAGGTTTGACTGAGTT</genome_strand>
        <mrna_strand>GCCGGTTTCATGG.........................................................................................................................................................................................................................................................................ATGTTTGTTACTATTCCAATGACAAATGAGAGTTTCCGACTTCTTTAGGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAGGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTTGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGGCGTGTTGGAATTCTTAAGAACAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTGTCTATCATTGAAGAGGCTCGCAAGAGGATGGCTACTCAATCAGCTACAACTGCTTAAAAATGATAGCTTGAACTTGTGATAAATTTAACAGGTT--G----GA--C-CA-TG--T----CTACCAATCTTATTCTGTATGTTGGATTTTAACATTTTTGTACTCGGTACCGTTTAACTTTGTTTTGTTGGGAAAAGAGG-TTGACTGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E313081" ref_strand="+" ref_description="SGN-E313081 [cTOA-14-N15]">
      <seq>aaagacgaatgagagcttccgacttctttatgacactaagggtcggttccgactccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcactttggacagaaagggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttacattcgaacaagattgctgacttcatcaagtttgatgtcggaaatgtggtcatggttactggcggtagaaacaggggacgtgttggaattcttaagaacagggagaagcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="57832" stop="58846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58132" g_stop="58213" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58303" g_stop="58546" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="326" r_length="244" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E313081" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58132" e_stop="58213"/>
          <exon e_start="58303" e_stop="58546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACA</genome_strand>
        <mrna_strand>AAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGACTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCACTTTGGACAGAAAGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTACATTCGAACAAGATTGCTGACTTCATCAAGTTTGATGTCGGAAATGTGGTCATGGTTACTGGCGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E252426" ref_strand="+" ref_description="SGN-E252426 [cLEG-12-D24]">
      <seq>tccgacttctttatgacactaagggtcggttccgtctccactcactcagagatgaggaagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcagtcagctacagctgcttaaaatgtctaggttggacttatgatgaatttaacaggttgggccatgattctcactgtttaaagatatcaatctcattttgtattttgaattttaacaattttgtatttggtaccggttaactttggtttgttgggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="57849" stop="59175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58149" g_stop="58213" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58303" g_stop="58875" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="638" r_length="573" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E252426" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58149" e_stop="58213"/>
          <exon e_start="58303" e_stop="58875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTAGAGATACCAATCTCATTTTGTATGTTGAATTTTAGCAATTTTGTATTTGGTACCGTTTAACTTTGTTTTGTTGGGAAAA</genome_strand>
        <mrna_strand>TCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTAAAGATATCAATCTCATTTTGTATTTTGAATTTTAACAATTTTGTATTTGGTACCGGTTAACTTTGGTTTGTTGGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E557966" ref_strand="-" ref_description="SGN-E557966 [16849]">
      <seq>agggtcggttccgtctgcatcactcagagatgaggagccaagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctatcctgatcccctcatcaaggccaatgacactatcaagcttgacttagattccaataagattgttgacttcatcaaatttgatgttggaaatgtggtcatggttactggtggtagatacagggggcgtgttggaattcttaagaacagagagaagcacaagggtagctttgagacagttcacattcaggattccctggggcatgagtttgctacccgtttgggaaatgtgttcactcttggtaaaggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctactcaatcagctacaactgcttacaaatgatagcttgaacttgtgataaatttaacaggttgggccatgtttctctttgtttagagataccaatcttattctgtatgttggattttaacatttttgtactcggtaccgtttaactttgttttgtctgggaaaagaggttgactgagtctaagagcattcatttgcttttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="50895" stop="59214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58170" g_stop="58213" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="0.93"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58303" g_stop="58914" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="654" r_length="612" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E557966" ref_strand="-">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E557966" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="58170" e_stop="58213"/>
          <exon e_start="58303" e_stop="58914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTA-AAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTAGAGATACCAATCTCATTTTGTATGTTGAATTTTAGCAATTTTGTATTTGGTACCGTTTAACTTTGTTTTGT-TGGGAAAATAGGTTTGACTGAGTTTAAGATCATTCATTTGCTTTTTA</genome_strand>
        <mrna_strand>AGGGTCGGTTCCGTCTGCA-TCACTCAGAGATGAGG-AGCCAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTATCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGATACAGGGGGCGTGTTGGAATTCTTAAGAACAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTACTCAATCAGCTACAACTGCTTACAAATG-ATAGCTTGAACTTGTGATAAATTTAACAGGTTGGGCCATGTTTCTCTTTGTTTAGAGATACCAATCTTATTCTGTATGTTGGATTTTAACATTTTTGTACTCGGTACCGTTTAACTTTGTTTTGTCTGGGAAAAGAGG-TTGACTGAGTCTAAGAGCATTCATTTGCTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E239523" ref_strand="+" ref_description="SGN-E239523 [cLED-23-P2]">
      <seq>aggaagccaagttcaaactttgtatggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="58001" stop="58914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58203" g_stop="58213" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58303" g_stop="58614" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="323" r_length="312" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E239523" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58203" e_stop="58213"/>
          <exon e_start="58303" e_stop="58614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGCCAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAAT</genome_strand>
        <mrna_strand>AGGAAGCCAAG.........................................................................................TTCAAACTTTGTATGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E252809" ref_strand="-" ref_description="SGN-E252809 [cLEG-16-I5]">
      <seq>caagttcaaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcagtcagctacagctgcttaaaatgtctaggttggacttatgatgaatttaacaggttgggccatgattctcactgtttagagatatcaatctcattttgtattttgaattttaacaattttgtatttggtaccgtttaactttgttttgttgggaaaataggtttgactgagtttaagatcattcatttgctttttaaaaaaaaaaaaaaaaaaaaactcgagactagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="58001" stop="59214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58210" g_stop="58213" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58303" g_stop="58913" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="615" r_length="611" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="616" polyA_stop="637"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E252809" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252809" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="58210" e_stop="58213"/>
          <exon e_start="58303" e_stop="58913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGTTTGAATCTGTTTCCTGCTTCTTCTTTATTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTCTGCTCTTTGCAGTTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTAGAGATACCAATCTCATTTTGTATGTTGAATTTTAGCAATTTTGTATTTGGTACCGTTTAACTTTGTTTTGTTGGGAAAATAGGTTTGACTGAGTTTAAGATCATTCATTTGCTTTTT</genome_strand>
        <mrna_strand>CAAG.........................................................................................TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTAGAGATATCAATCTCATTTTGTATTTTGAATTTTAACAATTTTGTATTTGGTACCGTTTAACTTTGTTTTGTTGGGAAAATAGGTTTGACTGAGTTTAAGATCATTCATTTGCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E701001" ref_strand="+" ref_description="SGN-E701001 [FA14DA08]">
      <seq>aaactttgtaaggttcgatcagtgcagtttggacagaaggggatcccatatctcaacacttatgatggaagaacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcagtcagctacagctgcttaaaatgtctaggttggacttatgatgaatttaacaggttgggccatgattctcactgtttagagataccaatctcattttgtatgttgaattttagcaattttgtatttggtaccgtttaactttgttttgttgggaaaataggtttgactgagtttaagatcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="58006" stop="59199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58306" g_stop="58898" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="594" polyA_stop="607"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E701001" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58306" e_stop="58898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTAGAGATACCAATCTCATTTTGTATGTTGAATTTTAGCAATTTTGTATTTGGTACCGTTTAACTTTGTTTTGTTGGGAAAATAGGTTTGACTGAGTTTAAGATC</genome_strand>
        <mrna_strand>AAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTAGAGATACCAATCTCATTTTGTATGTTGAATTTTAGCAATTTTGTATTTGGTACCGTTTAACTTTGTTTTGTTGGGAAAATAGGTTTGACTGAGTTTAAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E350188" ref_strand="+" ref_description="SGN-E350188 [cTOS-4-G8]">
      <seq>aacaatccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcagtcagctacagctgcttaaaatgtctaggttggacttatgatgaatttaacaggttgggccatgattctcactgtttagagatatcaatctcattttgtattttgaattttaacaattttgtatttggtaccgtttaactttgttttgttgggaaaataggtttgactgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="58077" stop="59188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58377" g_stop="58888" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="513" polyA_stop="526"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E350188" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58377" e_stop="58888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTAGAGATACCAATCTCATTTTGTATGTTGAATTTTAGCAATTTTGTATTTGGTACCGTTTAACTTTGTTTTGTTGGGAAAATAGGTTTGACTGA</genome_strand>
        <mrna_strand>AACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTAGAGATATCAATCTCATTTTGTATTTTGAATTTTAACAATTTTGTATTTGGTACCGTTTAACTTTGTTTTGTTGGGAAAATAGGTTTGACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E221688" ref_strand="+" ref_description="SGN-E221688 [cLEL-10-F22](-)">
      <seq>tccgctaccctgatcccctcatcaaggccaatgacactatcaagcttgacttagattcgaacaagattgttgacttcatcaagtttgatgttggaaatgtggtcatggttactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcagtcagctacagctgcttaaaatgtctaggttggacttatgatgaatttaacaggttgggccatgattctcactgtttagagatatcaatctcattttgtattttgaattttaacaattttgtatttggtaccgtttaactttgttttgttgggaaaataggtttgactgagtttaagatcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="58082" stop="59199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58382" g_stop="58898" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="518" polyA_stop="535"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E221688" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58382" e_stop="58898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTAGAGATACCAATCTCATTTTGTATGTTGAATTTTAGCAATTTTGTATTTGGTACCGTTTAACTTTGTTTTGTTGGGAAAATAGGTTTGACTGAGTTTAAGATC</genome_strand>
        <mrna_strand>TCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTAGAGATATCAATCTCATTTTGTATTTTGAATTTTAACAATTTTGTATTTGGTACCGTTTAACTTTGTTTTGTTGGGAAAATAGGTTTGACTGAGTTTAAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286362" ref_strand="+" ref_description="SGN-E286362 [cLES-11-D23]">
      <seq>ttttttttcattcaaacctatttttccaacaaaacaaagttatacggtgccaaatacaaaattgttaaaattcaaacttcaaaatgagattgatatctctaaacagtgagaatcatggcccaacctgttaaattcatcataagtccaacctagacattttaagcagctgtagctgactgagcagccatcctcttgcgagcctcttcaatgatagataacttgatacctttacccttaggtagagacacccatggcttactacccttgccaagagtgaacacattgcccagacgagtagcaaactcgtgccccagggagtcctgaatgtgaactgtctcaaagctacccttgtgcttctccctgttcttaagaattccaacacgtcccctgtttctaccaccagtaaccatgaccacatttccaacatcaaacttgatgaagtcaacaatcttgttcgaatctaagtcaagcttgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="59188" stop="58119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58895" g_stop="58419" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E286362" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58895" e_stop="58419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAACTCAGTCAAACCTATTTTCCCAACAAAACAAAGTTAAACGGTACCAAATACAAAATTGCTAAAATTCAACATACAAAATGAGATTGGTATCTCTAAACAGTGAGAATCATGGCCCAACCTGTTAAATTCATCATAAGTCCAACCTAGACATTTTAAGCAGCTGTAGCTGACTGAGCAGCCATCCTCTTGCGAGCCTCTTCAATGATAGATAACTTGATACCTTTACCCTTAGGTAGAGACACCCATGGCTTACTACCCTTGCCAAGAGTGAACACATTGCCCAGACGAGTAGCAAACTCGTGCCCCAGGGAGTCCTGAATGTGAACTGTCTCAAAGCTACCCTTGTGCTTCTCCCTGTTCTTAAGAATTCCAACACGTCCCCTGTTTCTACCACCAGTAACCATGACCACATTTCCAACATCAAACTTGATGAAGTCAACAATCTTGTTCGAATCTAAGTCAAGCTTGATA</genome_strand>
        <mrna_strand>TTTTTTTTCATTCAAACCTATTTTTCCAACAAAACAAAGTTATACGGTGCCAAATACAAAATTGTTAAAATTCAAACTTCAAAATGAGATTGATATCTCTAAACAGTGAGAATCATGGCCCAACCTGTTAAATTCATCATAAGTCCAACCTAGACATTTTAAGCAGCTGTAGCTGACTGAGCAGCCATCCTCTTGCGAGCCTCTTCAATGATAGATAACTTGATACCTTTACCCTTAGGTAGAGACACCCATGGCTTACTACCCTTGCCAAGAGTGAACACATTGCCCAGACGAGTAGCAAACTCGTGCCCCAGGGAGTCCTGAATGTGAACTGTCTCAAAGCTACCCTTGTGCTTCTCCCTGTTCTTAAGAATTCCAACACGTCCCCTGTTTCTACCACCAGTAACCATGACCACATTTCCAACATCAAACTTGATGAAGTCAACAATCTTGTTCGAATCTAAGTCAAGCTTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E215905" ref_strand="+" ref_description="SGN-E215905 [cLEL-15-F18](-)">
      <seq>aagtttgatgttggaaatgtggtcatggttactggtggtagaaacagggaacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcagtcagctacagctgcttaaaatgtctaggttggacttatgatgaatttaacaggttgggccatgattctcactgtttagagatatcaatctcattttgtattttgaattttaacaattttgtatttggtaccgtttaactttgttttgttgggaaaataggtttgactgagtttaagatcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="58162" stop="59199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58462" g_stop="58898" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="438" polyA_stop="453"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E215905" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58462" e_stop="58898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTAGAGATACCAATCTCATTTTGTATGTTGAATTTTAGCAATTTTGTATTTGGTACCGTTTAACTTTGTTTTGTTGGGAAAATAGGTTTGACTGAGTTTAAGATC</genome_strand>
        <mrna_strand>AAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGAACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTAGAGATATCAATCTCATTTTGTATTTTGAATTTTAACAATTTTGTATTTGGTACCGTTTAACTTTGTTTTGTTGGGAAAATAGGTTTGACTGAGTTTAAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E221763" ref_strand="+" ref_description="SGN-E221763 [cLEL-10-F22](-)">
      <seq>gtttgatgttgaaaatgtggtcatggttactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaaggngtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcagtcagctacagctgcttaaaatgtctaggttggacttatgatgaatttaacaggttgggccatgattctcactgtttagagatatcaatctcattttgtattttgaattttaacaattttgtatttggtaccgtttaactttgttttgttgggaaaataggtttgactgagtttaagatcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="58164" stop="59199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58464" g_stop="58898" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="437" polyA_stop="454"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E221763" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58464" e_stop="58898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGG-GTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTAGAGATACCAATCTCATTTTGTATGTTGAATTTTAGCAATTTTGTATTTGGTACCGTTTAACTTTGTTTTGTTGGGAAAATAGGTTTGACTGAGTTTAAGATC</genome_strand>
        <mrna_strand>GTTTGATGTTGAAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGNGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTAGAGATATCAATCTCATTTTGTATTTTGAATTTTAACAATTTTGTATTTGGTACCGTTTAACTTTGTTTTGTTGGGAAAATAGGTTTGACTGAGTTTAAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340335" ref_strand="+" ref_description="SGN-E340335 [cTOF-2-M12]">
      <seq>agggtggtcntggttactggtggtagaaacaggggacgtgttggaattcttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcagtcagctacagctgcttaaaatgtctaggttggacttatgatgaatttaacaggttgggccatgattctcactgtttagagatatcaatctcattttgtattttgaattttaacaattttgtatttggtaccgtttaactttgttttgttgggaaaataggtttgactgagtttaagatcattcatttgctttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="58180" stop="59214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58477" g_stop="58923" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E340335" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58477" e_stop="58923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTAGAGATACCAATCTCATTTTGTATGTTGAATTTTAGCAATTTTGTATTTGGTACCGTTTAACTTTGTTTTGTTGGGAAAATAGGTTTGACTGAGTTTAAGATCATTCATTTGCTTTTTATGTGATAGT</genome_strand>
        <mrna_strand>AGGGTGGTCNTGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTAGAGATATCAATCTCATTTTGTATTTTGAATTTTAACAATTTTGTATTTGGTACCGTTTAACTTTGTTTTGTTGGGAAAATAGGTTTGACTGAGTTTAAGATCATTCATTTGCTTTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E215597" ref_strand="+" ref_description="SGN-E215597 [cLEL-15-F18](-)">
      <seq>cttaagaacagggagaagcacaagggtagctttgagacagttcacattcaggactccatggggcacgagtttgctactcgtctgggcaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcagtcagctacagctgcttaaaatgtctaggttggacttatgatgaatttaacaggttgggccatgattctcactgtttagagatatcaatctcattttgtattttgaattttaacaattttgtatttggtaccgtttaactttgttttgttgggaaaataggtttgactgagtttaagatcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="58225" stop="59199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58525" g_stop="58898" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="375" polyA_stop="390"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E215597" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58525" e_stop="58898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTAGAGATACCAATCTCATTTTGTATGTTGAATTTTAGCAATTTTGTATTTGGTACCGTTTAACTTTGTTTTGTTGGGAAAATAGGTTTGACTGAGTTTAAGATC</genome_strand>
        <mrna_strand>CTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCATGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTAGAGATATCAATCTCATTTTGTATTTTGAATTTTAACAATTTTGTATTTGGTACCGTTTAACTTTGTTTTGTTGGGAAAATAGGTTTGACTGAGTTTAAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E218917" ref_strand="+" ref_description="SGN-E218917 [cLEL-18-N2](-)">
      <seq>attcaggactccctggggcacgagtttgctactcgtctgggcaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaagggtaaaggtatccagttatctatcattgaacaggctcgcaagaggatgactgctcagcaacctgcacctgcttaaaatgtctaggttgtacttatgatgaattaatcaggtcgggccaagattcactctgattatagacatcaatctcatattgggttctgaattataacaattttgtatttggtaccgtttaacattgttttgttgggaaaataggtttgactgagtttaagatcattcatttgctttttatgtgatagtgtttttttggtcgcttaaaaaaaaaaaaaaaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="58270" stop="59240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58570" g_stop="58940" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="372" polyA_stop="390"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E218917" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58570" e_stop="58940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTAGAGATACCAATCTCATTTTGTATGTTGAATTTTAGCAATTTTGTATTTGGTACCGTTTAACTTTGTTTTGTTGGGAAAATAGGTTTGACTGAGTTTAAGATCATTCATTTGCTTTTTATGTGATAGTGTTTTTTTGGTCGCTTA</genome_strand>
        <mrna_strand>ATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCCAGTTATCTATCATTGAACAGGCTCGCAAGAGGATGACTGCTCAGCAACCTGCACCTGCTTAAAATGTCTAGGTTGTACTTATGATGAATTAATCAGGTCGGGCCAAGATTCACTCTGATTATAGACATCAATCTCATATTGGGTTCTGAATTATAACAATTTTGTATTTGGTACCGTTTAACATTGTTTTGTTGGGAAAATAGGTTTGACTGAGTTTAAGATCATTCATTTGCTTTTTATGTGATAGTGTTTTTTTGGTCGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E222098" ref_strand="+" ref_description="SGN-E222098 [cLEL-36-A8](-)">
      <seq>ggggcacgagtttgctactcgtctgggcaatgtgttcactcttggcaagggtagtaagccatgggtgtctctacctaagggtaaaggtatcaagttatctatcattgaagaggctcgcaagaggatggctgctcagtcagctacagctgcttaaaatgtctaggttggacttatgatgaatttaacaggttgggccatgattctcactgtttagagatatcaatctcattttgtattttgaattttaacaattttgtatttggtaccgtttaactttgttttgttgggaaaataggtttgactgagtttaagatcattcatttgctttttatgtgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="58284" stop="59221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58584" g_stop="58921" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="339" polyA_stop="352"/>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E222098" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58584" e_stop="58921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTAGAGATACCAATCTCATTTTGTATGTTGAATTTTAGCAATTTTGTATTTGGTACCGTTTAACTTTGTTTTGTTGGGAAAATAGGTTTGACTGAGTTTAAGATCATTCATTTGCTTTTTATGTGATA</genome_strand>
        <mrna_strand>GGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTAGAGATATCAATCTCATTTTGTATTTTGAATTTTAACAATTTTGTATTTGGTACCGTTTAACTTTGTTTTGTTGGGAAAATAGGTTTGACTGAGTTTAAGATCATTCATTTGCTTTTTATGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E460308" ref_strand="+" ref_description="SGN-E460308 [cPRO-30-L5]">
      <seq>ataattacaacaagacttcgcggtatagcatctcctcttgaggataatttccacatctatgatctccaacccctcccttatgaattatcttggagaatcttttgcaagaaggcgtttcgatcatctcaggggacttgtcctgatgacttgaaggaattcgcggaggccatagtgagaaaatgtggaggtttgcctcttgcaattgtggccatcggaggcttattgtcgtgtaagggaagaaatactcgtgtgtggcaatctgttctcgataccttagattgggaattcaaccataaccgagacattgagcgtctaaacaaggccttgttgttcagctataatcaccttccattttacctcaagtattgtttcctttatctcggtttgttccctgaggactatgagattggaaggaaaaggctgatcccaatgtgggtggctgaagggtttgttgagggaactgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="61677" stop="60618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61377" g_stop="60918" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E460308" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61377" e_stop="60918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATTACAACAAGACTTCGCGGTTATAGCATCTCCTCTTGAGGATAATTTCCACACCTATTAACTCCAACCCCTCCCTTATGAATTAGCTTGGAAAATCGTTTGCAAGAAGGCGTTTCGATCATCTCAGGGGACTTGTCCTGATGAGTTGAAGGAATTCACAGAGGCTATAGTGAGAAAATGTGGAGGTTTGCCTCTTGCAATTGTAGCCATCGGAGGCTTATTGTCGTGTAAGGGAAGAAATACTCGTGTGTGGCAATCTGTTCTCGATACCTTAGATTGGG-A-T----CATAACCGAGACATTGGGCGTCTGAACAAGGCCTTGTTGTTCAGCTATAATCACCTTCCATTTTACCTTAAGTATTGTTTCCTTTATCTCGGTTTGTTCCCTGAGGACTATGAGATTGGGAGGAAAAAGCTGATCCGAATGTGGGTGGCCGAGGGGTTTGTTGAAGGAACTGCT</genome_strand>
        <mrna_strand>ATAATTACAACAAGACTTCGCGG-TATAGCATCTCCTCTTGAGGATAATTTCCACATCTATGATCTCCAACCCCTCCCTTATGAATTATCTTGGAGAATCTTTTGCAAGAAGGCGTTTCGATCATCTCAGGGGACTTGTCCTGATGACTTGAAGGAATTCGCGGAGGCCATAGTGAGAAAATGTGGAGGTTTGCCTCTTGCAATTGTGGCCATCGGAGGCTTATTGTCGTGTAAGGGAAGAAATACTCGTGTGTGGCAATCTGTTCTCGATACCTTAGATTGGGAATTCAACCATAACCGAGACATTGAGCGTCTAAACAAGGCCTTGTTGTTCAGCTATAATCACCTTCCATTTTACCTCAAGTATTGTTTCCTTTATCTCGGTTTGTTCCCTGAGGACTATGAGATTGGAAGGAAAAGGCTGATCCCAATGTGGGTGGCTGAAGGGTTTGTTGAGGGAACTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E436197" ref_strand="+" ref_description="SGN-E436197 [STM-62-N1]">
      <seq>ataattacaacaagacttcgcggtatagcatctcctcttgaggataatttccacatctatgatctccaacccctcccttatgaattatcttggagaatcttttgcaagaaggcgtttcgatcatctcaggggacttgtcctgatgacttgaaggaattcgcggaggccatagtgagaaaatgtggaggtttgcctcttgcaattgtggccatcggaggcttattgtcgtgtaagggaagaaatactcgtgtgtggcaatctgttctcgataccttagattgggaattcaaccataaccgagacattgagcgtctaaacaaggccttgttgttcagctataatcaccttccattttacctcaagtattgtttcctttatctcggtttgttccctgaggactatgagattggaaggaaaaggctgatccgaatgtgggtggctgaggggtttgttgagggaactgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="61677" stop="60618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61377" g_stop="60918" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E436197" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E436197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61377" e_stop="60918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATTACAACAAGACTTCGCGGTTATAGCATCTCCTCTTGAGGATAATTTCCACACCTATTAACTCCAACCCCTCCCTTATGAATTAGCTTGGAAAATCGTTTGCAAGAAGGCGTTTCGATCATCTCAGGGGACTTGTCCTGATGAGTTGAAGGAATTCACAGAGGCTATAGTGAGAAAATGTGGAGGTTTGCCTCTTGCAATTGTAGCCATCGGAGGCTTATTGTCGTGTAAGGGAAGAAATACTCGTGTGTGGCAATCTGTTCTCGATACCTTAGATTGGG-A-T----CATAACCGAGACATTGGGCGTCTGAACAAGGCCTTGTTGTTCAGCTATAATCACCTTCCATTTTACCTTAAGTATTGTTTCCTTTATCTCGGTTTGTTCCCTGAGGACTATGAGATTGGGAGGAAAAAGCTGATCCGAATGTGGGTGGCCGAGGGGTTTGTTGAAGGAACTGCT</genome_strand>
        <mrna_strand>ATAATTACAACAAGACTTCGCGG-TATAGCATCTCCTCTTGAGGATAATTTCCACATCTATGATCTCCAACCCCTCCCTTATGAATTATCTTGGAGAATCTTTTGCAAGAAGGCGTTTCGATCATCTCAGGGGACTTGTCCTGATGACTTGAAGGAATTCGCGGAGGCCATAGTGAGAAAATGTGGAGGTTTGCCTCTTGCAATTGTGGCCATCGGAGGCTTATTGTCGTGTAAGGGAAGAAATACTCGTGTGTGGCAATCTGTTCTCGATACCTTAGATTGGGAATTCAACCATAACCGAGACATTGAGCGTCTAAACAAGGCCTTGTTGTTCAGCTATAATCACCTTCCATTTTACCTCAAGTATTGTTTCCTTTATCTCGGTTTGTTCCCTGAGGACTATGAGATTGGAAGGAAAAGGCTGATCCGAATGTGGGTGGCTGAGGGGTTTGTTGAGGGAACTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745817" ref_strand="+" ref_description="SGN-E745817 [GI|47105053]">
      <seq>gaatggcttctgtattgtcaacttccttgtatcaagatagaggactgagaatcgtagcctctactgatggatttgtgccaactatttgctgcccctatcggaagaccttgtttacaggtactactcctgtttcaatatggaagctcaaatttgtctccagtagtccatttcaaaaggctcctttagctccttgtataaagtgtgagaacaaggaaaagaatcagggctcttttgagcaggtgtctgtcgagcgttttccttatcacagttatatggactccacttctgggcaacttgaaccagcatctggagctcgcgctagtattcctgggaaggagtactggccagaaggcacagctagtcgagttcaggccgccagggctcctgaaccagatggtatttcaactggaactccatcttatggaaaagctcctggaagtagaagaaagaagtacaaggcatctgcttcctcttcccagccttcagaaatcaatgtaatttctgatgatcctctggagactccagatagtgtaccagaagagccaaaggatctttcctcagagcatgtcatttatcagcctgaacaagatgaagaagagctgacaggctatgagctggataaaagacatggacggccccacccatttattgatccaaaggtaaagaaggaaatagagaagccgcttactagtgaagaattatggtggaattggagaaagcctgaaaaggagcaatggtctaggtgacagaggtggcgccctgatgttgaaacggtgtttcttaaagctatggcagagacaggacaagtaaagctctatggtgagcatcctacattgacagagactgcgctctatagagcaaggagacatttatataaggaggaaaggctacaggctgaaaaagaaaaaatggaaaagattggtcctattgcatactactcagagtgggtcaaagcttggaaaagagatacttctcgagatgccattcaaaagcattttgaagagactggtgaagatgagaacactcaactcatcgaaatgttctcccatcaaacagatcgtgaataccggataatgatgggaactgatatgcgtattcctcgtgacccgttggccatgagaatgcgggaggatcaaataaaacaaatttggggtggagatccagtttacccgaccattaattacattcaagatcctgatgaagtgattgatttcaggggtccagacttccatgaaccaacaccaaatatgttggcctatttgaaagagcatggcaaaataatatcaagagaggagctagagaaaattctggcgaaagagaagacggaagaaattgaggtggcagaaattgatgaagctatggcaagagctgttgacattggtgaaaatgatgatgaagaagaaggaagtgaggctgaaggtgaagaggaggatgagaaaattacacgcaattggagtgttttgaaaagtaatcccgagcttagcaaatcaaagggtaaacccaaaaagaaagacatgtctctggaggaagctgtagacgattctgaaaatttaacagacttccttatggactttgacgaggatgagtgaggctaatggacgccccaggctatcaaggataagcaaattattttcatccccatcaacaaagctctgttgattacagcaccagcatcttccctatgatggagtcgatgaacatatattggatgattgatacaatctggcaacaaggccaactaacttgggaacggtttgttgttgatgctgctgtgactcttaagcagcatctgctgaagatcttcaccccagaagagtagattttttatagaaagctttgggtattatttttgtggatgtaattggattatcttgtaaagcaaatgaaaaatggagaatgctaatgtagtagcttgtatccagcacacaatgtgaacttttgaagacgcggtaggtatattaaccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="70807" stop="62348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70508" g_stop="70473" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70472" i_stop="70383" i_length="90">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70382" g_stop="70315" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="104" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70314" i_stop="69464" i_length="851">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69463" g_stop="68795" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="773" r_length="669" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68794" i_stop="68490" i_length="305">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68489" g_stop="68377" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="774" r_stop="886" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68376" i_stop="67448" i_length="929">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67447" g_stop="67188" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="887" r_stop="1146" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67187" i_stop="66810" i_length="378">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66809" g_stop="66688" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1147" r_stop="1268" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="66687" i_stop="65357" i_length="1331">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65356" g_stop="65288" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1269" r_stop="1337" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65287" i_stop="64706" i_length="582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="64705" g_stop="64652" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1338" r_stop="1391" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="64651" i_stop="64499" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="64498" g_stop="64397" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1392" r_stop="1493" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="64396" i_stop="63571" i_length="826">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="63570" g_stop="63448" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1494" r_stop="1616" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="63447" i_stop="63007" i_length="441">
            <donor d_prob="0.263" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="63006" g_stop="62644" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1617" r_stop="1979" r_length="363" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E745817" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>1979</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70508" e_stop="70473"/>
          <exon e_start="70382" e_stop="70315"/>
          <exon e_start="69463" e_stop="68795"/>
          <exon e_start="68489" e_stop="68377"/>
          <exon e_start="67447" e_stop="67188"/>
          <exon e_start="66809" e_stop="66688"/>
          <exon e_start="65356" e_stop="65288"/>
          <exon e_start="64705" e_stop="64652"/>
          <exon e_start="64498" e_stop="64397"/>
          <exon e_start="63570" e_stop="63448"/>
          <exon e_start="63006" e_stop="62644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGGCTTCTGTATTGTCAACTTCCTTGTATCAAGGTAACTGTGTTTTACTTGTTGCACCTTTGATTTTTGTAAAAATAATTCTTCTTCGCTTTGTAAAATTGGTTTTTTTTCTGTTATTTGCAGATAGAGGACTGAGAATTGTAGCCTCTACTGATGGATTTGTGCCAACTATTTGCTGCCCCTATCGGAAGGTGTTTTTAGATTATTATGAACTCCAACAAATCTTATTATGTTTGTTAATCACCACTGGAAGTAGAATCTTATACTCTGTGTTGTTAGATAATAAGTAAAAAGGAGCACTTTTACAAAATTGTTCGTCTCTAAGAGTTCAAATTGTTGATTTTAGGTTTATATGTGACTTTTTGTATCTTCGAGAGGAATCAATGGTTTGGGTGAGCTATAAGAGTCTAGAAGAGATTAAAATGGTTTATATAATCAATTCTATTCAAGAGAGGGATATTTTTGGGAGTTTGATATATGCTTGAGGATATGGTTAACGTATTCTAGAGTGTTAGAGCTGACGATCAGGGAAAGCTGTTTGAAGGAAATGTTTTACTTCAATGGCAAAGAGAGTTTGGTTAGATTTTAGGAGTTATTTGTAGTTTCATGGTAGTAAATTGTTTTCTGATTTTGATATGCATCAAATTTCCTTTATACAATTAATCTGTGTGCTCATCTTATAGCTGACTCTCTTTCTTATCCCTCCACATGTACACCAAGTTTACCTGCCTATGTTTACTTCTTCATTTGCTGAACTGTGTATACGTATGCATCTGCATTGAACACCAGCACATGTTGCTCTCTGTGACGGTGAAATTCATATTGTAATCGGGGAAGGAAGAAGGTTTAAATTTCTGGCAGAAATTATTCATGAATTTGCATCTTATGTTTAAGCATCTCTTGTTTAACATTATGAAGTAAAGTCTGGCAATATGTTCAACATGCATGCTCAAAGGAAGGTGCTCTATATTGTAGCAAGGTTTCTCATCATTTTTAAAAGTTTTCATTAATAGGAGTATGCATTGTGCTGGGAACCACCCAGACCTTGTTTACAGGTACTACTCCTGTTTCAATATGGAAGCTCAAATTTGTCTCCAGTAGTCCATTTCAAAAGGCTCCTTTAGCTCCTTGTATAAAGTGTGAGAACAAGGAAAAGAATCAGGGCTCTTTTGAGCAGGTGTCTGTCGAGCGTTTTCCTTATCACAGTTATATGGACTCCACTTCTGGGCAACTTGAACCAGCATCTGGAGCTCGCGCTAGTATTCCTGGGAAGGAGTACTGGCCAGAAGGCACAGCTAGTCGAGTTCAGGCCGCCAGGGCTCCTGAACCAGATGGTATTTCAACTGGAACTCCATCTTATGGAAAAGCTCCTGGAAGTAGAAGAAAGAAGTACAAGGCATCTGCTTCCTCTTCCCAGCCTTCAGAAATCAATGTAATTTCTGATGATCCTCTGGAGACTCCAGATAGTGTACCAGAAGAGCCAAAGGATCTTTCCTCAGAGTATGTCATTTATCAGCCTGAACAAGATGAAGAAGAGCTGACAGGCTATGAGCTAGATAAAAGACATGGACGGCCCCACCCATTTATTGATCCAAAGGTAAAGAAGGAAATAGAGAAGCCGCTTACTAGTGAAGAATTATGGTGGAATTGGAGAAAGCCTGAAAAGGAGCAATGGTCTAGGTGGCAGAGGCGGCGCCCTGATGTTGAAACGGTCAGTACTGAAAATATATACTGCTAAGTAGAATAAATTGTTTATGTGTGTAATCAGTGTAATTTAATTGTGCTAATCAAGATTGGATGTCAATGCTGCTCATGCTAGTTGCTTGCTCGATGCCACATTGTAAAATAGATAAATGCAAATCTAAAGTGGATAAAATGATATCTTCAGTAGAGACGCGGTGAATATTAATAATACATTTCTAACCACTTTAAACCTCCCTTGGTTCTCGAGCAGATTCAAACTTATATCATCATAACATTCTGACTTAGAGATTATTATTATTTTCCCTGGAACAGGTCTTTCTTAAAGCTATGGCAGAGACAGGACAAGTAAAGCTCTATGGTGAGCATCCTACATTGACAGAGACTGCGCTCTATAGAGCAAGGAGACATTTATATAAGGAGGAAAGGTAGAATCAGCAACTTTTTTAATAATGTTGCATCACATGTTCTATTCTTCAAGTTTTAGTCTCTTCCTTTTTCCCTTGCACTGAAATGTTAAAAGATGGACCTCACTCGTTTGGTATTAAACTTATTCATAAGCCCTTCGTCTGTCATGAATGCATGTCATAAACTATAGGCTACAGGGAACCTTGCAAAGAAAGGATAGGCAAACTGAGAGGAAGTATAAAATAAGCAAATTCCATTTCCTTAATGTCTTATTATGTGCTTGTACACTGTTGTATTAGTTCATTCTTGGGAAGCTTATTATGGTACTTATTACAAAGAGTCAAGCAACAAATATTGTGTCTTTTCTTTTTTTCATATTCGTAATGTATATTATAAATAGCATTAACATGAAAAAATTGTCAAACTTCAGTTAGATTGATGATCAACTCCATGTCCTCTCTCTTACCTTTTGCTTTATCTACTGCTTTCAAAAGCTATTGGTTCTGCAAGCTCTCTGGAGCTGGTTTTTGATGAAAAGTTAAGTCTTGACTTCTATTTTGTTTATGTTTATCTTTTACCTGTATTATCTTTATATCCGTGGTGTGGGGGCACTTTGCCTGCATCATAACTATGCTGGTCTACTATCAGCCTACATGCACATGTGGCCTAGGTAATCTTGTCCACTAAGGTTAGAATGAAGGGGATTACACCAAGTGTGTGGTTAGGATTTGTACTTGGGATCTTCAGGTTGTTACTCCCATGCCTTAACTATTAGGTCATTGCCTTGGAGACCCGTTCTGATTTTATTTTCTGAAACTTGTCCCTTGTATTGTTCCCTAATTGACAGATCTTTGAGTTGCTAAATGACTTGGCAATCTACTTTCCCCGTTCAAGATGAACCAGAATACACTTTCTATTGGAACTAAGAACTAATAAGTGGGCAATGCAGGCTACAGGCTGAAAAAGAAAAAATGGAAAAGATTGGTCCTATTGCATACTACTCAGAGTGGGTCAAAGCTTGGAAAAGAGATACTTCTCGAGATGCCATTCAAAAGCATTTTGAAGAGACTGGTGAAGATGAGAACACTCAACTCATCGAAATGTTCTCCCATCAAACAGATCGTGAATACCGGATAATGATGGGAACTGATATGCGTATTCCTCGTGACCCGTTGGCCATGAGAATGCGGGAGGATCAAATAAAACAAAGTATCTCCCTTCCCTCTGGCTGAACTATACTTCATAACTTTTCCTGCTTTTTCTTGTGACTTGTGAGTATCTGTGTACGCAGCTGGTTTAGAAGTGAAGGTGATTGGAAGTTGGGGGACAATGATTTATTATCGGGTAGTTATAGGGATCTTTAGCTTGATTATTTCAGGAAATTGCCATCAAAAGTATTTTCAAATTATTTTTTTGAACAAAAATATCTAAACATAGCCTGAAGTAATTGAGGTAAAAAAAGTGCCTGTCTCTTTATCCTGTCAGAATGATTGGAAATTATAAGTGATTTGTTCTGATTTATTCGGTTTTCTTTTTCTATTTTGACTGGAAATCAACAATTTGCTTTTTCCTTTTCTTTTTGTGCAGTTTGGGGTGGAGATCCAGTTTACCCGACCATTAATTACATTCAAGATCCTGATGAAGTGATTGATTTCAGGGGTCCAGACTTCCATGAACCAACACCAAATATGTTGGCCTATTTGAAAGAGGTTTGGTTAAGCAACTTGCTATTCAATACCCTACATGGTTTTTCTGCCTAGTTAACTTTGTTGACCTTATTTCTGACCTCGTTTTCACATATGCACTTCAAATTAATTGCCAAGTGCTAGTACATGCACTGTTTATTATCAAAAGCTACAGAATTAGTGATGTATTTCATGTTTAAGCAAATGGAAATGGAGATACTGTGCTAAATTCTGTTTATGCTCTTTGCCTCCATATGAGATGTTGCATTATTTACTTTGTAGAGATACTGAGGCTCAATCTCTTAACTAGATGAATAGATATTAACTAATGTTTCCAGTAAACTTGATGGTTATCCTAAACCAATCAATCAATGTGATCTATCATGAATACAATGGAAGCAAAGGATCTATCTATGTAGGCTATACTTTCTTGTTGATATTAGGCAGTCGTTGTTGTTGTGCCACTTACATGACATCCAATGCTTATTATAATGAGAGATTTATAAATCCTTTAGAGCTAAGAATGAGAAATAGGCTGGTATTAGAGAACCCTTAAAATTGTGTTAAAAGATGAGGCAATGGATGCAGATAGAGTGGAATAGATGCAAATGAATTTATAAATGATGACGTTTTTCAGGCCATTTTGTGTGCGCATCAACTAATTCACGAGCAGACTGCTACAACCACCAAGTTTGGGGCAGATGGGCCCACACTGAATGTTGTAGTTAGAATCTTGAAGTTTTTATTTCTATCTGTCAACTGCTAAGTCATCGCCTCGGGGACATATAGAAGATCCATTCAGCTGATTCCAACTAATTTGGTATCAAGGCTTAGTTGATTAATTCAGACTTGAGGGATATGCAATTTGTCAAATTGTTATGGGCAAACAACTAGGTGTATATAGCTAATGAGGAATATGAACAAAATCTCTTCTAAATGTGTTATTTTTACTTTTGGAGATCAGGAAAGTTTTAAATTAGGTAAAAGGTCTAGTAGATTATGAAGATGAAGGGAAGTCAAAGAGAATTGAGATGGAAGTTCCAGTAAGTCAAGCCAAATTTTGCTGATAGGTCCACTTGATGAAGATTTGACTTTACTGAGCTTTGTGAATGTGATGAATCTAATCAAAAGGATTCTAGATCAGGTTTGGTGATTGGAGAAGATAACTGTTTGTATGGTAAATATGTTGTAGCATACTTCTTTAGCTGTCATGTTAACTCAAGAAACAAAAGGCTACAAGTATAGTTGTTATCGGCTGTGTATAGAGTTGATATACCTGTTTTAGTGATTATGTTTTATCAGCCTATCTTTTACTAATTTATGTTCGGGGTTTTATCGGAACATTTTGTTATCAGCATGGCAAAATTATATCAAGAGAGGAGCTAGAGAAAATTCTGGCGAAAGAGAAGACGGAAGAAATTGAGGTAATAAATTTTCATAGGTATTTATAATACTTCGTTTCATTCTCTGAGTTTTGTGTAAAAAGTACTATTCCTTGCAGTTGCATTTGTTGTTTTATTGCATTGCTGCTAACAAATTGTTATACATGTAAAAGCTTCAATTGAATAGTTTATCTATTTGTTATTTATAGAATTTACTTTTTAAGGAAAGAGAAATGATGATGCAAATGATGTTGAAGCAGTGTTAAAATTCATAGATTCTCTTTAAGGATAGGAAGGGATACACTCTCTGGGTTGACTGTAAATACTTTTAATTGCACCTTCTTGGTGTGATATCTTATAATACACTTACCTCTCTTGAAAAAAATTACTTTTTAAGGTGTACAAGCAAAACTACTCTAGATCCCAGGCACAAATATGTTGCAGTTAGCTTGCACATAAAATTGAAAAAATTAACTCTAGCAAACTGTTGTCTACTTCATTCTTCAATCTTTTCTTATGCATCAAATAATATTGCAATCATCAACAATCAGATTGCTTAACATTAGTACCCTGTCTCCTTTTCTTTGAATCTGTTCAGTAAAAGTACTTTCTTCTCTGCAACAGGTGGCAGAAATTGATGAAGCTATGGCAAGAGCTGTTGACATTGGTGAAAATGATGTGAGATCATTCTTATTCTTACTTTGTTCTAGTTTTGGTGTTTGATGAACTTTGTTTTGCTTCATCCTGAACTTCTAAATTTTCTAATTTGCTATGTTGGCCTTGTATGTTAATCATTAGTTTTATGTCAAGTAACTCCTCTTGGTGGTTCAGGATGAAGAAGAAGGAAGTGAGGCTGAAGGTGAAGAGGAGGATGAGAAAATTACACGCAATTGGAGTGTTTTGAAAAGTAATCCCGAGCTTAGCAAATCAAAGGTAATTTCCTTTCTACTGATCATTGATTTATTGGTTTCCTTTCTGATCTTATGGCTCAATTTGTTAAATCAATTGAAAGGATGATTGATTTAGTGATTTTGTTATATACTGCTATGCTATATATTTGGCTAACAATCTGGTTTTTCTTGATGTCTATACTTGCCTAAAAGTCTAAAACTGCTGTTTTTCGGTTCTATCTGTCCTTTGCTACATGGTTTGTAGTAGGGGTGGCGAAATCAGCCCAAATAACCATGACCCGCCCAATCCATATATGTTTGGTGGATTAATGACCTGTTAATTTGATTAGCTGGGCCCATTATGACTTACTTAGTTCAGCCTATTTTAAAACTGGGGTAATATGCAGCATGAGACATATCGTCTAAATATAAAATAACTTTTTTTTTATTTTATATGTTTTTTATAGTCATAATAAGAAAATTTTATCAAGTACCCGAACAAATTATAAGAAACAAACTTTGAATTTAAAACTTAGTAAGCATTGAGCAGGTTGGTTCATAACCCGATTTTTAGTGCATTTCAGCCCAAACAACATTTAAGCGGGTCAATGGCCCGCCCATTTATTAACTCAACCCATTTTAACATTCTCAAACTCAGCCCAACCCGCCCATTTGACCCCTCTAGTTTGTAGCAAATTATTCCTCTTAAGGAAATTTCCTCTGTGCGTGGAGATAATGGAATACAAATTTTATACAATAGGATGCACTTCATGACCTTGCAGGGTAAACCCAAAAAGAAAGACATGTCTTCTTCTTAATGTAATTTTTATTTGGAGTTTCACAACAGCATGCACTTCATGACCTTGCAGGGTAAACCCAAAAAGAAAGACATGTCTCTGGAGGAAGCTGTAGACGATTCTGAAAATTTAACAGACTTCCTTATGGACTTTGACGAGGATGAGTGAGGCTAATGGACGCCCCAGGCTATCAAGGTGAGCTCCTTCGTCTGGAAAATGGAAACAGAGGTGCTTGACATAAACTTCTTTAGGTGAAATGAATCTATGTTCTGTGCACGTACTGTACATACATTTAAATAACCTTTGTTTCGACGTGATGAGGCATCACACAGAAAAATCATTGTGAAACCCCATAACTTGTAATGCAACTTTGCAATAAGAACACCCCTTGAACTCTGTGCTTTCACACAATCTTGTGATTTGACCTGATTATTGGCCATTCATACCATCTAAATCAACAAAAATAAGTTTGTAAGCCAAAAGAAATTCCATGTTGATGCATCACTACATGGGCGAATTATGATCATATATATACCTGACTACGCAAGAGACCCTCTGGTGCATGTTCTCGTTACTTTTTTGCAAGATGGTCCAAGTTGTTTCATCAATGATAGAGAATTTGTTTCTACCTTGCAGGATAAGCAAATTATTTTCATCCCCATCAACAAAGCTCTGTTGATTACAGCACCAGCATCTTCCCTATGATGGAGTCGATGAACATATATTGGATGATTGATACGATCTGGCAACAAGGCCAACTAACTTGGGAACGGTTTGTTGTTGATGCTGCTGTGACTCTTAAGCAGCATCTGCTGAAGATCTTCACCCCAGAAGAGTAGATTTTTTATAGAAAGCTTTGGGTATTATTTTTGTGGATGTAATTGGATTATCTTGTAAAGCAAATGAAAAATGGAGAATGCTAATGTAGTAGCTTGTATCCAGCACACAATGTGAACTTTTGAAGACGCGGTTGGTATACTAACCAGAAATTAGAAGCAG</genome_strand>
        <mrna_strand>GAATGGCTTCTGTATTGTCAACTTCCTTGTATCAAG..........................................................................................ATAGAGGACTGAGAATCGTAGCCTCTACTGATGGATTTGTGCCAACTATTTGCTGCCCCTATCGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTTGTTTACAGGTACTACTCCTGTTTCAATATGGAAGCTCAAATTTGTCTCCAGTAGTCCATTTCAAAAGGCTCCTTTAGCTCCTTGTATAAAGTGTGAGAACAAGGAAAAGAATCAGGGCTCTTTTGAGCAGGTGTCTGTCGAGCGTTTTCCTTATCACAGTTATATGGACTCCACTTCTGGGCAACTTGAACCAGCATCTGGAGCTCGCGCTAGTATTCCTGGGAAGGAGTACTGGCCAGAAGGCACAGCTAGTCGAGTTCAGGCCGCCAGGGCTCCTGAACCAGATGGTATTTCAACTGGAACTCCATCTTATGGAAAAGCTCCTGGAAGTAGAAGAAAGAAGTACAAGGCATCTGCTTCCTCTTCCCAGCCTTCAGAAATCAATGTAATTTCTGATGATCCTCTGGAGACTCCAGATAGTGTACCAGAAGAGCCAAAGGATCTTTCCTCAGAGCATGTCATTTATCAGCCTGAACAAGATGAAGAAGAGCTGACAGGCTATGAGCTGGATAAAAGACATGGACGGCCCCACCCATTTATTGATCCAAAGGTAAAGAAGGAAATAGAGAAGCCGCTTACTAGTGAAGAATTATGGTGGAATTGGAGAAAGCCTGAAAAGGAGCAATGGTCTAGGTGACAGAGGTGGCGCCCTGATGTTGAAACG.................................................................................................................................................................................................................................................................................................................GTGTTTCTTAAAGCTATGGCAGAGACAGGACAAGTAAAGCTCTATGGTGAGCATCCTACATTGACAGAGACTGCGCTCTATAGAGCAAGGAGACATTTATATAAGGAGGAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACAGGCTGAAAAAGAAAAAATGGAAAAGATTGGTCCTATTGCATACTACTCAGAGTGGGTCAAAGCTTGGAAAAGAGATACTTCTCGAGATGCCATTCAAAAGCATTTTGAAGAGACTGGTGAAGATGAGAACACTCAACTCATCGAAATGTTCTCCCATCAAACAGATCGTGAATACCGGATAATGATGGGAACTGATATGCGTATTCCTCGTGACCCGTTGGCCATGAGAATGCGGGAGGATCAAATAAAACAAA..........................................................................................................................................................................................................................................................................................................................................................................................TTTGGGGTGGAGATCCAGTTTACCCGACCATTAATTACATTCAAGATCCTGATGAAGTGATTGATTTCAGGGGTCCAGACTTCCATGAACCAACACCAAATATGTTGGCCTATTTGAAAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGCAAAATAATATCAAGAGAGGAGCTAGAGAAAATTCTGGCGAAAGAGAAGACGGAAGAAATTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAGAAATTGATGAAGCTATGGCAAGAGCTGTTGACATTGGTGAAAATGAT.........................................................................................................................................................GATGAAGAAGAAGGAAGTGAGGCTGAAGGTGAAGAGGAGGATGAGAAAATTACACGCAATTGGAGTGTTTTGAAAAGTAATCCCGAGCTTAGCAAATCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAAACCCAAAAAGAAAGACATGTCTCTGGAGGAAGCTGTAGACGATTCTGAAAATTTAACAGACTTCCTTATGGACTTTGACGAGGATGAGTGAGGCTAATGGACGCCCCAGGCTATCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAGCAAATTATTTTCATCCCCATCAACAAAGCTCTGTTGATTACAGCACCAGCATCTTCCCTATGATGGAGTCGATGAACATATATTGGATGATTGATACAATCTGGCAACAAGGCCAACTAACTTGGGAACGGTTTGTTGTTGATGCTGCTGTGACTCTTAAGCAGCATCTGCTGAAGATCTTCACCCCAGAAGAGTAGATTTTTTATAGAAAGCTTTGGGTATTATTTTTGTGGATGTAATTGGATTATCTTGTAAAGCAAATGAAAAATGGAGAATGCTAATGTAGTAGCTTGTATCCAGCACACAATGTGAACTTTTGAAGACGCGGTAGGTATATTAACCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367744" ref_strand="+" ref_description="SGN-E367744 [cLPT-14-G14]">
      <seq>tgaagaggaggatgagaaaattacacgcaattggagtgttttgaaaagtaatcccgagcttagcaaatcaaagggtaaacccaaaaagaaagacatgtctctggaggaagctgtagacgattctgaaaatttaacagacttccttatggactttgacgaggatgagtgaggctaatggattccccaggctatcaaggataagcaaattattttcatccccatcaacaaagctctgttgattacaacaccagcatcttccctatgatggagtcgatgaacatatattggatgattgatacgatctggcaacaaggccaactaacttgggaacggtttgttgttgatgctgctgtgactcttaagcagcatctgctgaagatcttcaccccagaagagtagattttttatagaaagctttgggtattatttctgtggatgtaattggattatcttgtaaagcaaatgaaaaatggagaatgctaatgtagtagcttgtatccagcacacaatgtgaacttttgaagacacggttggtatattaaccaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="64769" stop="62356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64469" g_stop="64397" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64396" i_stop="63571" i_length="826">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63570" g_stop="63448" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="196" r_length="123" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63447" i_stop="63007" i_length="441">
            <donor d_prob="0.263" d_score="0.96"/>
            <acceptor a_prob="0.877" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63006" g_stop="62656" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="547" r_length="351" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E367744" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64469" e_stop="64397"/>
          <exon e_start="63570" e_stop="63448"/>
          <exon e_start="63006" e_stop="62656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGAGGAGGATGAGAAAATTACACGCAATTGGAGTGTTTTGAAAAGTAATCCCGAGCTTAGCAAATCAAAGGTAATTTCCTTTCTACTGATCATTGATTTATTGGTTTCCTTTCTGATCTTATGGCTCAATTTGTTAAATCAATTGAAAGGATGATTGATTTAGTGATTTTGTTATATACTGCTATGCTATATATTTGGCTAACAATCTGGTTTTTCTTGATGTCTATACTTGCCTAAAAGTCTAAAACTGCTGTTTTTCGGTTCTATCTGTCCTTTGCTACATGGTTTGTAGTAGGGGTGGCGAAATCAGCCCAAATAACCATGACCCGCCCAATCCATATATGTTTGGTGGATTAATGACCTGTTAATTTGATTAGCTGGGCCCATTATGACTTACTTAGTTCAGCCTATTTTAAAACTGGGGTAATATGCAGCATGAGACATATCGTCTAAATATAAAATAACTTTTTTTTTATTTTATATGTTTTTTATAGTCATAATAAGAAAATTTTATCAAGTACCCGAACAAATTATAAGAAACAAACTTTGAATTTAAAACTTAGTAAGCATTGAGCAGGTTGGTTCATAACCCGATTTTTAGTGCATTTCAGCCCAAACAACATTTAAGCGGGTCAATGGCCCGCCCATTTATTAACTCAACCCATTTTAACATTCTCAAACTCAGCCCAACCCGCCCATTTGACCCCTCTAGTTTGTAGCAAATTATTCCTCTTAAGGAAATTTCCTCTGTGCGTGGAGATAATGGAATACAAATTTTATACAATAGGATGCACTTCATGACCTTGCAGGGTAAACCCAAAAAGAAAGACATGTCTTCTTCTTAATGTAATTTTTATTTGGAGTTTCACAACAGCATGCACTTCATGACCTTGCAGGGTAAACCCAAAAAGAAAGACATGTCTCTGGAGGAAGCTGTAGACGATTCTGAAAATTTAACAGACTTCCTTATGGACTTTGACGAGGATGAGTGAGGCTAATGGACGCCCCAGGCTATCAAGGTGAGCTCCTTCGTCTGGAAAATGGAAACAGAGGTGCTTGACATAAACTTCTTTAGGTGAAATGAATCTATGTTCTGTGCACGTACTGTACATACATTTAAATAACCTTTGTTTCGACGTGATGAGGCATCACACAGAAAAATCATTGTGAAACCCCATAACTTGTAATGCAACTTTGCAATAAGAACACCCCTTGAACTCTGTGCTTTCACACAATCTTGTGATTTGACCTGATTATTGGCCATTCATACCATCTAAATCAACAAAAATAAGTTTGTAAGCCAAAAGAAATTCCATGTTGATGCATCACTACATGGGCGAATTATGATCATATATATACCTGACTACGCAAGAGACCCTCTGGTGCATGTTCTCGTTACTTTTTTGCAAGATGGTCCAAGTTGTTTCATCAATGATAGAGAATTTGTTTCTACCTTGCAGGATAAGCAAATTATTTTCATCCCCATCAACAAAGCTCTGTTGATTACAGCACCAGCATCTTCCCTATGATGGAGTCGATGAACATATATTGGATGATTGATACGATCTGGCAACAAGGCCAACTAACTTGGGAACGGTTTGTTGTTGATGCTGCTGTGACTCTTAAGCAGCATCTGCTGAAGATCTTCACCCCAGAAGAGTAGATTTTTTATAGAAAGCTTTGGGTATTATTTTTGTGGATGTAATTGGATTATCTTGTAAAGCAAATGAAAAATGGAGAATGCTAATGTAGTAGCTTGTATCCAGCACACAATGTGAACTTTTGAAGACGCGGTTGGTATACTAACCAGA</genome_strand>
        <mrna_strand>TGAAGAGGAGGATGAGAAAATTACACGCAATTGGAGTGTTTTGAAAAGTAATCCCGAGCTTAGCAAATCAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAAACCCAAAAAGAAAGACATGTCTCTGGAGGAAGCTGTAGACGATTCTGAAAATTTAACAGACTTCCTTATGGACTTTGACGAGGATGAGTGAGGCTAATGGATTCCCCAGGCTATCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAGCAAATTATTTTCATCCCCATCAACAAAGCTCTGTTGATTACAACACCAGCATCTTCCCTATGATGGAGTCGATGAACATATATTGGATGATTGATACGATCTGGCAACAAGGCCAACTAACTTGGGAACGGTTTGTTGTTGATGCTGCTGTGACTCTTAAGCAGCATCTGCTGAAGATCTTCACCCCAGAAGAGTAGATTTTTTATAGAAAGCTTTGGGTATTATTTCTGTGGATGTAATTGGATTATCTTGTAAAGCAAATGAAAAATGGAGAATGCTAATGTAGTAGCTTGTATCCAGCACACAATGTGAACTTTTGAAGACACGGTTGGTATATTAACCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E470114" ref_strand="+" ref_description="SGN-E470114 [cSTB-17-C13]">
      <seq>ggaagagagatacttctcgagaggccattcaaaaggagtttgaagagactggtgaagacgagaacactcaactcatcgaaatgttctcccatcaaacagatcgtgaataccgcataatgatgggaactgatatgcgtattcctcgtgacccgttggccatgagaatgcgggaggatcaaataaaacaaatttggggtggagatccagtttacccgaccattaattacattcaagatccagatgaagtgattgatttcaggggtccagacttccatgaaccaacaccaaatatgttggcctatttgaaagagcatggcaaaataatatcaagagaggagctagagaaaattctggccaaagagaagacagaagaaattgaggtggcagaaattgatgaagctatggcaagagctgttgacattggtgaaaatgatgatgaagaagaaggaagtgaggctgaaggtgaagaggaggatgagaaaattacacgcaattggagtgttttgaaaagtaatcctgagcttagcaaatcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="67676" stop="64098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67376" g_stop="67188" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67187" i_stop="66810" i_length="378">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66809" g_stop="66688" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="311" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66687" i_stop="65357" i_length="1331">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65356" g_stop="65288" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="380" r_length="69" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65287" i_stop="64706" i_length="582">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64705" g_stop="64652" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="434" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64651" i_stop="64499" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64498" g_stop="64398" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="535" r_length="101" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E470114" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67376" e_stop="67188"/>
          <exon e_start="66809" e_stop="66688"/>
          <exon e_start="65356" e_stop="65288"/>
          <exon e_start="64705" e_stop="64652"/>
          <exon e_start="64498" e_stop="64398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAGAGATACTTCTCGAGATGCCATTCAAAAGCATTTTGAAGAGACTGGTGAAGATGAGAACACTCAACTCATCGAAATGTTCTCCCATCAAACAGATCGTGAATACCGGATAATGATGGGAACTGATATGCGTATTCCTCGTGACCCGTTGGCCATGAGAATGCGGGAGGATCAAATAAAACAAAGTATCTCCCTTCCCTCTGGCTGAACTATACTTCATAACTTTTCCTGCTTTTTCTTGTGACTTGTGAGTATCTGTGTACGCAGCTGGTTTAGAAGTGAAGGTGATTGGAAGTTGGGGGACAATGATTTATTATCGGGTAGTTATAGGGATCTTTAGCTTGATTATTTCAGGAAATTGCCATCAAAAGTATTTTCAAATTATTTTTTTGAACAAAAATATCTAAACATAGCCTGAAGTAATTGAGGTAAAAAAAGTGCCTGTCTCTTTATCCTGTCAGAATGATTGGAAATTATAAGTGATTTGTTCTGATTTATTCGGTTTTCTTTTTCTATTTTGACTGGAAATCAACAATTTGCTTTTTCCTTTTCTTTTTGTGCAGTTTGGGGTGGAGATCCAGTTTACCCGACCATTAATTACATTCAAGATCCTGATGAAGTGATTGATTTCAGGGGTCCAGACTTCCATGAACCAACACCAAATATGTTGGCCTATTTGAAAGAGGTTTGGTTAAGCAACTTGCTATTCAATACCCTACATGGTTTTTCTGCCTAGTTAACTTTGTTGACCTTATTTCTGACCTCGTTTTCACATATGCACTTCAAATTAATTGCCAAGTGCTAGTACATGCACTGTTTATTATCAAAAGCTACAGAATTAGTGATGTATTTCATGTTTAAGCAAATGGAAATGGAGATACTGTGCTAAATTCTGTTTATGCTCTTTGCCTCCATATGAGATGTTGCATTATTTACTTTGTAGAGATACTGAGGCTCAATCTCTTAACTAGATGAATAGATATTAACTAATGTTTCCAGTAAACTTGATGGTTATCCTAAACCAATCAATCAATGTGATCTATCATGAATACAATGGAAGCAAAGGATCTATCTATGTAGGCTATACTTTCTTGTTGATATTAGGCAGTCGTTGTTGTTGTGCCACTTACATGACATCCAATGCTTATTATAATGAGAGATTTATAAATCCTTTAGAGCTAAGAATGAGAAATAGGCTGGTATTAGAGAACCCTTAAAATTGTGTTAAAAGATGAGGCAATGGATGCAGATAGAGTGGAATAGATGCAAATGAATTTATAAATGATGACGTTTTTCAGGCCATTTTGTGTGCGCATCAACTAATTCACGAGCAGACTGCTACAACCACCAAGTTTGGGGCAGATGGGCCCACACTGAATGTTGTAGTTAGAATCTTGAAGTTTTTATTTCTATCTGTCAACTGCTAAGTCATCGCCTCGGGGACATATAGAAGATCCATTCAGCTGATTCCAACTAATTTGGTATCAAGGCTTAGTTGATTAATTCAGACTTGAGGGATATGCAATTTGTCAAATTGTTATGGGCAAACAACTAGGTGTATATAGCTAATGAGGAATATGAACAAAATCTCTTCTAAATGTGTTATTTTTACTTTTGGAGATCAGGAAAGTTTTAAATTAGGTAAAAGGTCTAGTAGATTATGAAGATGAAGGGAAGTCAAAGAGAATTGAGATGGAAGTTCCAGTAAGTCAAGCCAAATTTTGCTGATAGGTCCACTTGATGAAGATTTGACTTTACTGAGCTTTGTGAATGTGATGAATCTAATCAAAAGGATTCTAGATCAGGTTTGGTGATTGGAGAAGATAACTGTTTGTATGGTAAATATGTTGTAGCATACTTCTTTAGCTGTCATGTTAACTCAAGAAACAAAAGGCTACAAGTATAGTTGTTATCGGCTGTGTATAGAGTTGATATACCTGTTTTAGTGATTATGTTTTATCAGCCTATCTTTTACTAATTTATGTTCGGGGTTTTATCGGAACATTTTGTTATCAGCATGGCAAAATTATATCAAGAGAGGAGCTAGAGAAAATTCTGGCGAAAGAGAAGACGGAAGAAATTGAGGTAATAAATTTTCATAGGTATTTATAATACTTCGTTTCATTCTCTGAGTTTTGTGTAAAAAGTACTATTCCTTGCAGTTGCATTTGTTGTTTTATTGCATTGCTGCTAACAAATTGTTATACATGTAAAAGCTTCAATTGAATAGTTTATCTATTTGTTATTTATAGAATTTACTTTTTAAGGAAAGAGAAATGATGATGCAAATGATGTTGAAGCAGTGTTAAAATTCATAGATTCTCTTTAAGGATAGGAAGGGATACACTCTCTGGGTTGACTGTAAATACTTTTAATTGCACCTTCTTGGTGTGATATCTTATAATACACTTACCTCTCTTGAAAAAAATTACTTTTTAAGGTGTACAAGCAAAACTACTCTAGATCCCAGGCACAAATATGTTGCAGTTAGCTTGCACATAAAATTGAAAAAATTAACTCTAGCAAACTGTTGTCTACTTCATTCTTCAATCTTTTCTTATGCATCAAATAATATTGCAATCATCAACAATCAGATTGCTTAACATTAGTACCCTGTCTCCTTTTCTTTGAATCTGTTCAGTAAAAGTACTTTCTTCTCTGCAACAGGTGGCAGAAATTGATGAAGCTATGGCAAGAGCTGTTGACATTGGTGAAAATGATGTGAGATCATTCTTATTCTTACTTTGTTCTAGTTTTGGTGTTTGATGAACTTTGTTTTGCTTCATCCTGAACTTCTAAATTTTCTAATTTGCTATGTTGGCCTTGTATGTTAATCATTAGTTTTATGTCAAGTAACTCCTCTTGGTGGTTCAGGATGAAGAAGAAGGAAGTGAGGCTGAAGGTGAAGAGGAGGATGAGAAAATTACACGCAATTGGAGTGTTTTGAAAAGTAATCCCGAGCTTAGCAAATCAAA</genome_strand>
        <mrna_strand>GGAAGAGAGATACTTCTCGAGAGGCCATTCAAAAGGAGTTTGAAGAGACTGGTGAAGACGAGAACACTCAACTCATCGAAATGTTCTCCCATCAAACAGATCGTGAATACCGCATAATGATGGGAACTGATATGCGTATTCCTCGTGACCCGTTGGCCATGAGAATGCGGGAGGATCAAATAAAACAAA..........................................................................................................................................................................................................................................................................................................................................................................................TTTGGGGTGGAGATCCAGTTTACCCGACCATTAATTACATTCAAGATCCAGATGAAGTGATTGATTTCAGGGGTCCAGACTTCCATGAACCAACACCAAATATGTTGGCCTATTTGAAAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGCAAAATAATATCAAGAGAGGAGCTAGAGAAAATTCTGGCCAAAGAGAAGACAGAAGAAATTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAGAAATTGATGAAGCTATGGCAAGAGCTGTTGACATTGGTGAAAATGAT.........................................................................................................................................................GATGAAGAAGAAGGAAGTGAGGCTGAAGGTGAAGAGGAGGATGAGAAAATTACACGCAATTGGAGTGTTTTGAAAAGTAATCCTGAGCTTAGCAAATCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E327127" ref_strand="+" ref_description="SGN-E327127 [cTOC-18-K15]">
      <seq>agacatctgcttcctcttcccagccttcagaaatcaatgtaatttctgatgatcctctggagactccagatagtgtaccagaagagccaaaggatctttcctcagagtatgtcatttatcagcctgaacaagatgaagaagagctgacaggctatgagctggataaaagacatggacggccccacccatttattgatccaaaggtaaagaaggaaatagagaagccgcttactagtgaagaattatggtggaattggagaaagcctgaaaaggagcaatggtctaggtggcagaggcggcgccctgatgttgaaacggtgtttcttaaagctatggcagagacaggacaagtaaagctctatggtgagcatcctacattgacagagactgcgctctatagagcaaggagacatttatataaggaggaaaggctacaggctgaaaaagaaaaaatggaaaagattggtcctattgcatactactcagagtgggtcaaagcttggaaaagagatacttctcgagatgccattcaaaagcattttgaagagactggtgaagatgagaacactcaactcatcgaaatgttctcccatcaaacagatcgtgaataccggataatgatgggaactgatatgcgtattcctcgtgacccgttggccatgagaatgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="69411" stop="66907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69111" g_stop="68795" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68794" i_stop="68490" i_length="305">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68489" g_stop="68377" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="430" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68376" i_stop="67448" i_length="929">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67447" g_stop="67207" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="671" r_length="241" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E327127" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69111" e_stop="68795"/>
          <exon e_start="68489" e_stop="68377"/>
          <exon e_start="67447" e_stop="67207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCATCTGCTTCCTCTTCCCAGCCTTCAGAAATCAATGTAATTTCTGATGATCCTCTGGAGACTCCAGATAGTGTACCAGAAGAGCCAAAGGATCTTTCCTCAGAGTATGTCATTTATCAGCCTGAACAAGATGAAGAAGAGCTGACAGGCTATGAGCTAGATAAAAGACATGGACGGCCCCACCCATTTATTGATCCAAAGGTAAAGAAGGAAATAGAGAAGCCGCTTACTAGTGAAGAATTATGGTGGAATTGGAGAAAGCCTGAAAAGGAGCAATGGTCTAGGTGGCAGAGGCGGCGCCCTGATGTTGAAACGGTCAGTACTGAAAATATATACTGCTAAGTAGAATAAATTGTTTATGTGTGTAATCAGTGTAATTTAATTGTGCTAATCAAGATTGGATGTCAATGCTGCTCATGCTAGTTGCTTGCTCGATGCCACATTGTAAAATAGATAAATGCAAATCTAAAGTGGATAAAATGATATCTTCAGTAGAGACGCGGTGAATATTAATAATACATTTCTAACCACTTTAAACCTCCCTTGGTTCTCGAGCAGATTCAAACTTATATCATCATAACATTCTGACTTAGAGATTATTATTATTTTCCCTGGAACAGGTCTTTCTTAAAGCTATGGCAGAGACAGGACAAGTAAAGCTCTATGGTGAGCATCCTACATTGACAGAGACTGCGCTCTATAGAGCAAGGAGACATTTATATAAGGAGGAAAGGTAGAATCAGCAACTTTTTTAATAATGTTGCATCACATGTTCTATTCTTCAAGTTTTAGTCTCTTCCTTTTTCCCTTGCACTGAAATGTTAAAAGATGGACCTCACTCGTTTGGTATTAAACTTATTCATAAGCCCTTCGTCTGTCATGAATGCATGTCATAAACTATAGGCTACAGGGAACCTTGCAAAGAAAGGATAGGCAAACTGAGAGGAAGTATAAAATAAGCAAATTCCATTTCCTTAATGTCTTATTATGTGCTTGTACACTGTTGTATTAGTTCATTCTTGGGAAGCTTATTATGGTACTTATTACAAAGAGTCAAGCAACAAATATTGTGTCTTTTCTTTTTTTCATATTCGTAATGTATATTATAAATAGCATTAACATGAAAAAATTGTCAAACTTCAGTTAGATTGATGATCAACTCCATGTCCTCTCTCTTACCTTTTGCTTTATCTACTGCTTTCAAAAGCTATTGGTTCTGCAAGCTCTCTGGAGCTGGTTTTTGATGAAAAGTTAAGTCTTGACTTCTATTTTGTTTATGTTTATCTTTTACCTGTATTATCTTTATATCCGTGGTGTGGGGGCACTTTGCCTGCATCATAACTATGCTGGTCTACTATCAGCCTACATGCACATGTGGCCTAGGTAATCTTGTCCACTAAGGTTAGAATGAAGGGGATTACACCAAGTGTGTGGTTAGGATTTGTACTTGGGATCTTCAGGTTGTTACTCCCATGCCTTAACTATTAGGTCATTGCCTTGGAGACCCGTTCTGATTTTATTTTCTGAAACTTGTCCCTTGTATTGTTCCCTAATTGACAGATCTTTGAGTTGCTAAATGACTTGGCAATCTACTTTCCCCGTTCAAGATGAACCAGAATACACTTTCTATTGGAACTAAGAACTAATAAGTGGGCAATGCAGGCTACAGGCTGAAAAAGAAAAAATGGAAAAGATTGGTCCTATTGCATACTACTCAGAGTGGGTCAAAGCTTGGAAAAGAGATACTTCTCGAGATGCCATTCAAAAGCATTTTGAAGAGACTGGTGAAGATGAGAACACTCAACTCATCGAAATGTTCTCCCATCAAACAGATCGTGAATACCGGATAATGATGGGAACTGATATGCGTATTCCTCGTGACCCGTTGGCCATGAGAATGCGG</genome_strand>
        <mrna_strand>AGACATCTGCTTCCTCTTCCCAGCCTTCAGAAATCAATGTAATTTCTGATGATCCTCTGGAGACTCCAGATAGTGTACCAGAAGAGCCAAAGGATCTTTCCTCAGAGTATGTCATTTATCAGCCTGAACAAGATGAAGAAGAGCTGACAGGCTATGAGCTGGATAAAAGACATGGACGGCCCCACCCATTTATTGATCCAAAGGTAAAGAAGGAAATAGAGAAGCCGCTTACTAGTGAAGAATTATGGTGGAATTGGAGAAAGCCTGAAAAGGAGCAATGGTCTAGGTGGCAGAGGCGGCGCCCTGATGTTGAAACG.................................................................................................................................................................................................................................................................................................................GTGTTTCTTAAAGCTATGGCAGAGACAGGACAAGTAAAGCTCTATGGTGAGCATCCTACATTGACAGAGACTGCGCTCTATAGAGCAAGGAGACATTTATATAAGGAGGAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACAGGCTGAAAAAGAAAAAATGGAAAAGATTGGTCCTATTGCATACTACTCAGAGTGGGTCAAAGCTTGGAAAAGAGATACTTCTCGAGATGCCATTCAAAAGCATTTTGAAGAGACTGGTGAAGATGAGAACACTCAACTCATCGAAATGTTCTCCCATCAAACAGATCGTGAATACCGGATAATGATGGGAACTGATATGCGTATTCCTCGTGACCCGTTGGCCATGAGAATGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E579340" ref_strand="+" ref_description="SGN-E579340 [87322]">
      <seq>gtttcccttatcacagttatatggactccacttctgggcaacttgaaccagcatctggagctcgcgctagtattcctgggaaggagtactggccagaaggcacagctagtcgagttcaggccgccagggctcctgaaccagatggtatttcaactggaactccatcttatggaaaaactcctggaagtagaagaaagaagtacaaggcatctgcttccacttcccagccttcagaaatcaatgtaatttctgatgatcctctggagactccagataatgtaccagaagagccaaaggatctttcctcagagtatgtcatttatcagcctgaacaagatgaagaggagctgacaggctatgagctggataaaagacatggacggccccacccatttattgatccaaaggcaaagaaggaaatagagaagccacttactagtgaagaactatggtggaattggagaaaacctgagaaggagcaatggtctaggtggcagaggcggcgccctgatgttgaaacggtgtttcttaaagctatggcagagacaggacaagtaaagctctatggtgagcatcctacattgacagagactgcgctctatagagcaaggagacatntatataaggaggacaggctacaggctgaaaaagaacacaatggaaccagattggtcctattgcatactactcagagtgggtcaaagcttgggaagagagatacttctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="69615" stop="67058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69315" g_stop="68795" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68794" i_stop="68490" i_length="305">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68489" g_stop="68377" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="634" r_length="113" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68376" i_stop="67448" i_length="929">
            <donor d_prob="0.931" d_score="0.96"/>
            <acceptor a_prob="0.833" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67447" g_stop="67358" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="727" r_length="93" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E579340" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E579340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69315" e_stop="68795"/>
          <exon e_start="68489" e_stop="68377"/>
          <exon e_start="67447" e_stop="67358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTCCTTATCACAGTTATATGGACTCCACTTCTGGGCAACTTGAACCAGCATCTGGAGCTCGCGCTAGTATTCCTGGGAAGGAGTACTGGCCAGAAGGCACAGCTAGTCGAGTTCAGGCCGCCAGGGCTCCTGAACCAGATGGTATTTCAACTGGAACTCCATCTTATGGAAAAGCTCCTGGAAGTAGAAGAAAGAAGTACAAGGCATCTGCTTCCTCTTCCCAGCCTTCAGAAATCAATGTAATTTCTGATGATCCTCTGGAGACTCCAGATAGTGTACCAGAAGAGCCAAAGGATCTTTCCTCAGAGTATGTCATTTATCAGCCTGAACAAGATGAAGAAGAGCTGACAGGCTATGAGCTAGATAAAAGACATGGACGGCCCCACCCATTTATTGATCCAAAGGTAAAGAAGGAAATAGAGAAGCCGCTTACTAGTGAAGAATTATGGTGGAATTGGAGAAAGCCTGAAAAGGAGCAATGGTCTAGGTGGCAGAGGCGGCGCCCTGATGTTGAAACGGTCAGTACTGAAAATATATACTGCTAAGTAGAATAAATTGTTTATGTGTGTAATCAGTGTAATTTAATTGTGCTAATCAAGATTGGATGTCAATGCTGCTCATGCTAGTTGCTTGCTCGATGCCACATTGTAAAATAGATAAATGCAAATCTAAAGTGGATAAAATGATATCTTCAGTAGAGACGCGGTGAATATTAATAATACATTTCTAACCACTTTAAACCTCCCTTGGTTCTCGAGCAGATTCAAACTTATATCATCATAACATTCTGACTTAGAGATTATTATTATTTTCCCTGGAACAGGTCTTTCTTAAAGCTATGGCAGAGACAGGACAAGTAAAGCTCTATGGTGAGCATCCTACATTGACAGAGACTGCGCTCTATAGAGCAAGGAGACATTTATATAAGGAGGAAAGGTAGAATCAGCAACTTTTTTAATAATGTTGCATCACATGTTCTATTCTTCAAGTTTTAGTCTCTTCCTTTTTCCCTTGCACTGAAATGTTAAAAGATGGACCTCACTCGTTTGGTATTAAACTTATTCATAAGCCCTTCGTCTGTCATGAATGCATGTCATAAACTATAGGCTACAGGGAACCTTGCAAAGAAAGGATAGGCAAACTGAGAGGAAGTATAAAATAAGCAAATTCCATTTCCTTAATGTCTTATTATGTGCTTGTACACTGTTGTATTAGTTCATTCTTGGGAAGCTTATTATGGTACTTATTACAAAGAGTCAAGCAACAAATATTGTGTCTTTTCTTTTTTTCATATTCGTAATGTATATTATAAATAGCATTAACATGAAAAAATTGTCAAACTTCAGTTAGATTGATGATCAACTCCATGTCCTCTCTCTTACCTTTTGCTTTATCTACTGCTTTCAAAAGCTATTGGTTCTGCAAGCTCTCTGGAGCTGGTTTTTGATGAAAAGTTAAGTCTTGACTTCTATTTTGTTTATGTTTATCTTTTACCTGTATTATCTTTATATCCGTGGTGTGGGGGCACTTTGCCTGCATCATAACTATGCTGGTCTACTATCAGCCTACATGCACATGTGGCCTAGGTAATCTTGTCCACTAAGGTTAGAATGAAGGGGATTACACCAAGTGTGTGGTTAGGATTTGTACTTGGGATCTTCAGGTTGTTACTCCCATGCCTTAACTATTAGGTCATTGCCTTGGAGACCCGTTCTGATTTTATTTTCTGAAACTTGTCCCTTGTATTGTTCCCTAATTGACAGATCTTTGAGTTGCTAAATGACTTGGCAATCTACTTTCCCCGTTCAAGATGAACCAGAATACACTTTCTATTGGAACTAAGAACTAATAAGTGGGCAATGCAGGCTACAGGCTGAAAAAGAA-AAAATGGAA-AAGATTGGTCCTATTGCATACTACTCAGAGTGGGTCAAAGCTT-GGAAAAGAGATACTTCTCG</genome_strand>
        <mrna_strand>GTTTCCCTTATCACAGTTATATGGACTCCACTTCTGGGCAACTTGAACCAGCATCTGGAGCTCGCGCTAGTATTCCTGGGAAGGAGTACTGGCCAGAAGGCACAGCTAGTCGAGTTCAGGCCGCCAGGGCTCCTGAACCAGATGGTATTTCAACTGGAACTCCATCTTATGGAAAAACTCCTGGAAGTAGAAGAAAGAAGTACAAGGCATCTGCTTCCACTTCCCAGCCTTCAGAAATCAATGTAATTTCTGATGATCCTCTGGAGACTCCAGATAATGTACCAGAAGAGCCAAAGGATCTTTCCTCAGAGTATGTCATTTATCAGCCTGAACAAGATGAAGAGGAGCTGACAGGCTATGAGCTGGATAAAAGACATGGACGGCCCCACCCATTTATTGATCCAAAGGCAAAGAAGGAAATAGAGAAGCCACTTACTAGTGAAGAACTATGGTGGAATTGGAGAAAACCTGAGAAGGAGCAATGGTCTAGGTGGCAGAGGCGGCGCCCTGATGTTGAAACG.................................................................................................................................................................................................................................................................................................................GTGTTTCTTAAAGCTATGGCAGAGACAGGACAAGTAAAGCTCTATGGTGAGCATCCTACATTGACAGAGACTGCGCTCTATAGAGCAAGGAGACATNTATATAAGGAGGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACAGGCTGAAAAAGAACACAATGGAACCAGATTGGTCCTATTGCATACTACTCAGAGTGGGTCAAAGCTTGGGAAGAGAGATACTTCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E702335" ref_strand="+" ref_description="SGN-E702335 [FA18BG06]">
      <seq>cttccttgtatcaagatagaggactgagaattgtagcctctactgatggatttgtgccaactatttgctgcccctatcggaagaccttgtttacaggtactactcctgtttcaatatggaagctcaaatttgtctccagtagtccatttcaaaaggctcctttagctccttgtataaagtgtgagaacaaggaaaagaatcagggctcttttgagcaggtgtctgtcgagcgttttccttatcacagttatatggactccacttctgggcaacttgaaccagcatctggagctcgcgctagtattcctgggaaggagtactggccagaaggcacagctagtcgagttcaggccgccagggctcctgaaccagatggtatttcaactggaactccatcttatggaaaagctcctggaagtagaagaaagaagtacaaggcatctgcttcctcttcccagccttcagaaatcaatgtaatttctgatgatcctctggagactccagatagtgtaccagaagagccaaaggatctttcctcagagtatgtcatttatcagcctgaacaagatgaagaagagctgacaggctatgagctagataaaagacatggacggccccacccatttattgatccaaaggtaaagaaggaaatagagaagccgcttactagtgaagaattatggtggaattggagaaagcctgaaaaggagcaatggtctaggtggcagaggcggcgccctgatgttgaaacggtctttcttaaagctatggcagagacaggacaagtaaagctctatggtgagcatccctacattgacagagactgcgctctatagagcaaggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="70692" stop="68098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70487" g_stop="70473" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70472" i_stop="70383" i_length="90">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70382" g_stop="70315" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="83" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70314" i_stop="69464" i_length="851">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69463" g_stop="68795" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="752" r_length="669" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68794" i_stop="68490" i_length="305">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68489" g_stop="68398" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="753" r_stop="845" r_length="93" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E702335" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>844</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70487" e_stop="70473"/>
          <exon e_start="70382" e_stop="70315"/>
          <exon e_start="69463" e_stop="68795"/>
          <exon e_start="68489" e_stop="68398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCTTGTATCAAGGTAACTGTGTTTTACTTGTTGCACCTTTGATTTTTGTAAAAATAATTCTTCTTCGCTTTGTAAAATTGGTTTTTTTTCTGTTATTTGCAGATAGAGGACTGAGAATTGTAGCCTCTACTGATGGATTTGTGCCAACTATTTGCTGCCCCTATCGGAAGGTGTTTTTAGATTATTATGAACTCCAACAAATCTTATTATGTTTGTTAATCACCACTGGAAGTAGAATCTTATACTCTGTGTTGTTAGATAATAAGTAAAAAGGAGCACTTTTACAAAATTGTTCGTCTCTAAGAGTTCAAATTGTTGATTTTAGGTTTATATGTGACTTTTTGTATCTTCGAGAGGAATCAATGGTTTGGGTGAGCTATAAGAGTCTAGAAGAGATTAAAATGGTTTATATAATCAATTCTATTCAAGAGAGGGATATTTTTGGGAGTTTGATATATGCTTGAGGATATGGTTAACGTATTCTAGAGTGTTAGAGCTGACGATCAGGGAAAGCTGTTTGAAGGAAATGTTTTACTTCAATGGCAAAGAGAGTTTGGTTAGATTTTAGGAGTTATTTGTAGTTTCATGGTAGTAAATTGTTTTCTGATTTTGATATGCATCAAATTTCCTTTATACAATTAATCTGTGTGCTCATCTTATAGCTGACTCTCTTTCTTATCCCTCCACATGTACACCAAGTTTACCTGCCTATGTTTACTTCTTCATTTGCTGAACTGTGTATACGTATGCATCTGCATTGAACACCAGCACATGTTGCTCTCTGTGACGGTGAAATTCATATTGTAATCGGGGAAGGAAGAAGGTTTAAATTTCTGGCAGAAATTATTCATGAATTTGCATCTTATGTTTAAGCATCTCTTGTTTAACATTATGAAGTAAAGTCTGGCAATATGTTCAACATGCATGCTCAAAGGAAGGTGCTCTATATTGTAGCAAGGTTTCTCATCATTTTTAAAAGTTTTCATTAATAGGAGTATGCATTGTGCTGGGAACCACCCAGACCTTGTTTACAGGTACTACTCCTGTTTCAATATGGAAGCTCAAATTTGTCTCCAGTAGTCCATTTCAAAAGGCTCCTTTAGCTCCTTGTATAAAGTGTGAGAACAAGGAAAAGAATCAGGGCTCTTTTGAGCAGGTGTCTGTCGAGCGTTTTCCTTATCACAGTTATATGGACTCCACTTCTGGGCAACTTGAACCAGCATCTGGAGCTCGCGCTAGTATTCCTGGGAAGGAGTACTGGCCAGAAGGCACAGCTAGTCGAGTTCAGGCCGCCAGGGCTCCTGAACCAGATGGTATTTCAACTGGAACTCCATCTTATGGAAAAGCTCCTGGAAGTAGAAGAAAGAAGTACAAGGCATCTGCTTCCTCTTCCCAGCCTTCAGAAATCAATGTAATTTCTGATGATCCTCTGGAGACTCCAGATAGTGTACCAGAAGAGCCAAAGGATCTTTCCTCAGAGTATGTCATTTATCAGCCTGAACAAGATGAAGAAGAGCTGACAGGCTATGAGCTAGATAAAAGACATGGACGGCCCCACCCATTTATTGATCCAAAGGTAAAGAAGGAAATAGAGAAGCCGCTTACTAGTGAAGAATTATGGTGGAATTGGAGAAAGCCTGAAAAGGAGCAATGGTCTAGGTGGCAGAGGCGGCGCCCTGATGTTGAAACGGTCAGTACTGAAAATATATACTGCTAAGTAGAATAAATTGTTTATGTGTGTAATCAGTGTAATTTAATTGTGCTAATCAAGATTGGATGTCAATGCTGCTCATGCTAGTTGCTTGCTCGATGCCACATTGTAAAATAGATAAATGCAAATCTAAAGTGGATAAAATGATATCTTCAGTAGAGACGCGGTGAATATTAATAATACATTTCTAACCACTTTAAACCTCCCTTGGTTCTCGAGCAGATTCAAACTTATATCATCATAACATTCTGACTTAGAGATTATTATTATTTTCCCTGGAACAGGTCTTTCTTAAAGCTATGGCAGAGACAGGACAAGTAAAGCTCTATGGTGAGCAT-CCTACATTGACAGAGACTGCGCTCTATAGAGCAAGGAG</genome_strand>
        <mrna_strand>CTTCCTTGTATCAAG..........................................................................................ATAGAGGACTGAGAATTGTAGCCTCTACTGATGGATTTGTGCCAACTATTTGCTGCCCCTATCGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTTGTTTACAGGTACTACTCCTGTTTCAATATGGAAGCTCAAATTTGTCTCCAGTAGTCCATTTCAAAAGGCTCCTTTAGCTCCTTGTATAAAGTGTGAGAACAAGGAAAAGAATCAGGGCTCTTTTGAGCAGGTGTCTGTCGAGCGTTTTCCTTATCACAGTTATATGGACTCCACTTCTGGGCAACTTGAACCAGCATCTGGAGCTCGCGCTAGTATTCCTGGGAAGGAGTACTGGCCAGAAGGCACAGCTAGTCGAGTTCAGGCCGCCAGGGCTCCTGAACCAGATGGTATTTCAACTGGAACTCCATCTTATGGAAAAGCTCCTGGAAGTAGAAGAAAGAAGTACAAGGCATCTGCTTCCTCTTCCCAGCCTTCAGAAATCAATGTAATTTCTGATGATCCTCTGGAGACTCCAGATAGTGTACCAGAAGAGCCAAAGGATCTTTCCTCAGAGTATGTCATTTATCAGCCTGAACAAGATGAAGAAGAGCTGACAGGCTATGAGCTAGATAAAAGACATGGACGGCCCCACCCATTTATTGATCCAAAGGTAAAGAAGGAAATAGAGAAGCCGCTTACTAGTGAAGAATTATGGTGGAATTGGAGAAAGCCTGAAAAGGAGCAATGGTCTAGGTGGCAGAGGCGGCGCCCTGATGTTGAAACG.................................................................................................................................................................................................................................................................................................................GTCTTTCTTAAAGCTATGGCAGAGACAGGACAAGTAAAGCTCTATGGTGAGCATCCCTACATTGACAGAGACTGCGCTCTATAGAGCAAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E315726" ref_strand="+" ref_description="SGN-E315726 [cTOA-26-O5]">
      <seq>tttatagcaatttcgagttgccaatttcagcaatggcttctgtattgtcaacttccttgtatcaagatagaggactgagaattgtagcctctactgatggatttgtgccaactatttgctgcccctatcggaagaccttgtttacaggtactactcctgtttcaatatggaagctcaaatttgtctccagtagtccatttcaaaaggctcctttagctccttgtataaagtgtgagaacaaggaaaagaatcagggctcttttgagcaggtgtctgtcgagcgttttccttatcacagttatatggactccacttctgggcaacttgaaccagcatctggagctcgcgctagtattcctgggaaggagtactggccagaaggcacagctagtcgagttcaggccgccagggctcctgaaccagatggtatttcaactggaactccatcttatggaaaagctcctgggagtagaagaaagaagtacaagacatctgcttcctcttcccagccttcagaaatcaatgtaatttctgatgatcctctggagactccagatagtgtaccagaagagccaaaggatctttcctcagagtatgtcatttatcagcctgaacaagatgaagaagagctgacaggctatgagctggataanagacatggacggccccacccatttattgatccaaaggtaaagaagaaatagagaagccgcttactagtgaagaattatggtggaattggagaaagcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="70838" stop="68546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70538" g_stop="70473" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70472" i_stop="70383" i_length="90">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70382" g_stop="70315" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="134" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70314" i_stop="69464" i_length="851">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69463" g_stop="68846" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="751" r_length="617" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E315726" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70538" e_stop="70473"/>
          <exon e_start="70382" e_stop="70315"/>
          <exon e_start="69463" e_stop="68846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATAGCAATTTCGAGTTGCCAATTTCAGCAATGGCTTCTGTATTGTCAACTTCCTTGTATCAAGGTAACTGTGTTTTACTTGTTGCACCTTTGATTTTTGTAAAAATAATTCTTCTTCGCTTTGTAAAATTGGTTTTTTTTCTGTTATTTGCAGATAGAGGACTGAGAATTGTAGCCTCTACTGATGGATTTGTGCCAACTATTTGCTGCCCCTATCGGAAGGTGTTTTTAGATTATTATGAACTCCAACAAATCTTATTATGTTTGTTAATCACCACTGGAAGTAGAATCTTATACTCTGTGTTGTTAGATAATAAGTAAAAAGGAGCACTTTTACAAAATTGTTCGTCTCTAAGAGTTCAAATTGTTGATTTTAGGTTTATATGTGACTTTTTGTATCTTCGAGAGGAATCAATGGTTTGGGTGAGCTATAAGAGTCTAGAAGAGATTAAAATGGTTTATATAATCAATTCTATTCAAGAGAGGGATATTTTTGGGAGTTTGATATATGCTTGAGGATATGGTTAACGTATTCTAGAGTGTTAGAGCTGACGATCAGGGAAAGCTGTTTGAAGGAAATGTTTTACTTCAATGGCAAAGAGAGTTTGGTTAGATTTTAGGAGTTATTTGTAGTTTCATGGTAGTAAATTGTTTTCTGATTTTGATATGCATCAAATTTCCTTTATACAATTAATCTGTGTGCTCATCTTATAGCTGACTCTCTTTCTTATCCCTCCACATGTACACCAAGTTTACCTGCCTATGTTTACTTCTTCATTTGCTGAACTGTGTATACGTATGCATCTGCATTGAACACCAGCACATGTTGCTCTCTGTGACGGTGAAATTCATATTGTAATCGGGGAAGGAAGAAGGTTTAAATTTCTGGCAGAAATTATTCATGAATTTGCATCTTATGTTTAAGCATCTCTTGTTTAACATTATGAAGTAAAGTCTGGCAATATGTTCAACATGCATGCTCAAAGGAAGGTGCTCTATATTGTAGCAAGGTTTCTCATCATTTTTAAAAGTTTTCATTAATAGGAGTATGCATTGTGCTGGGAACCACCCAGACCTTGTTTACAGGTACTACTCCTGTTTCAATATGGAAGCTCAAATTTGTCTCCAGTAGTCCATTTCAAAAGGCTCCTTTAGCTCCTTGTATAAAGTGTGAGAACAAGGAAAAGAATCAGGGCTCTTTTGAGCAGGTGTCTGTCGAGCGTTTTCCTTATCACAGTTATATGGACTCCACTTCTGGGCAACTTGAACCAGCATCTGGAGCTCGCGCTAGTATTCCTGGGAAGGAGTACTGGCCAGAAGGCACAGCTAGTCGAGTTCAGGCCGCCAGGGCTCCTGAACCAGATGGTATTTCAACTGGAACTCCATCTTATGGAAAAGCTCCTGGAAGTAGAAGAAAGAAGTACAAGGCATCTGCTTCCTCTTCCCAGCCTTCAGAAATCAATGTAATTTCTGATGATCCTCTGGAGACTCCAGATAGTGTACCAGAAGAGCCAAAGGATCTTTCCTCAGAGTATGTCATTTATCAGCCTGAACAAGATGAAGAAGAGCTGACAGGCTATGAGCTAGATAAAAGACATGGACGGCCCCACCCATTTATTGATCCAAAGGTAAAGAAGGAAATAGAGAAGCCGCTTACTAGTGAAGAATTATGGTGGAATTGGAGAAAGCCT</genome_strand>
        <mrna_strand>TTTATAGCAATTTCGAGTTGCCAATTTCAGCAATGGCTTCTGTATTGTCAACTTCCTTGTATCAAG..........................................................................................ATAGAGGACTGAGAATTGTAGCCTCTACTGATGGATTTGTGCCAACTATTTGCTGCCCCTATCGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTTGTTTACAGGTACTACTCCTGTTTCAATATGGAAGCTCAAATTTGTCTCCAGTAGTCCATTTCAAAAGGCTCCTTTAGCTCCTTGTATAAAGTGTGAGAACAAGGAAAAGAATCAGGGCTCTTTTGAGCAGGTGTCTGTCGAGCGTTTTCCTTATCACAGTTATATGGACTCCACTTCTGGGCAACTTGAACCAGCATCTGGAGCTCGCGCTAGTATTCCTGGGAAGGAGTACTGGCCAGAAGGCACAGCTAGTCGAGTTCAGGCCGCCAGGGCTCCTGAACCAGATGGTATTTCAACTGGAACTCCATCTTATGGAAAAGCTCCTGGGAGTAGAAGAAAGAAGTACAAGACATCTGCTTCCTCTTCCCAGCCTTCAGAAATCAATGTAATTTCTGATGATCCTCTGGAGACTCCAGATAGTGTACCAGAAGAGCCAAAGGATCTTTCCTCAGAGTATGTCATTTATCAGCCTGAACAAGATGAAGAAGAGCTGACAGGCTATGAGCTGGATAANAGACATGGACGGCCCCACCCATTTATTGATCCAAAGGTAAAGAA-GAAATAGAGAAGCCGCTTACTAGTGAAGAATTATGGTGGAATTGGAGAAAGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E452390" ref_strand="+" ref_description="SGN-E452390 [cSTS-16-L19]">
      <seq>caacttccttgtatcaagatagaggactgagaattgtagcctctactgatggatttgtgcctagtatttgctgcccttatcggaagacattgtttacaggtactactcctgtttcaatatggcagctcaaatttgtctccagtagtccatttcaaaaggctcctttagctccttgtataaagtgtgagaacaaggaaaagaatcagggttcctttgagcaggtgtctgtcgagcgtttcccttatcacagttatatggactccacttctgggcaacttgaaccagcatctggagctcgcgctagtattcctgggaaggagtactggccagaaggcacagctagtcgagttcaggccgccagggctcctgaaccagatggtatttcaactggaactccatcttatggaaaaactcctggaagtagaagaaagaagtacaaggcatctgcttccacttcccagccttcagaaatcaatgtaatttctgatgatcctctggagactccagataatgtaccagaagagccaaaggatctttcctcagagtatgtcatttatcagcctgaacaagatgaagaggagctgacaggctatgagctggataaaagacatggacggccccacccatttattgatccaaaggcaaagaaggaaatagagaagccacttactagtgaagaactatggtggaattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="70790" stop="68555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70490" g_stop="70473" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70472" i_stop="70383" i_length="90">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70382" g_stop="70315" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="86" r_length="68" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70314" i_stop="69464" i_length="851">
            <donor d_prob="0.941" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69463" g_stop="68855" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="695" r_length="609" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E452390" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E452390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70490" e_stop="70473"/>
          <exon e_start="70382" e_stop="70315"/>
          <exon e_start="69463" e_stop="68855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTCCTTGTATCAAGGTAACTGTGTTTTACTTGTTGCACCTTTGATTTTTGTAAAAATAATTCTTCTTCGCTTTGTAAAATTGGTTTTTTTTCTGTTATTTGCAGATAGAGGACTGAGAATTGTAGCCTCTACTGATGGATTTGTGCCAACTATTTGCTGCCCCTATCGGAAGGTGTTTTTAGATTATTATGAACTCCAACAAATCTTATTATGTTTGTTAATCACCACTGGAAGTAGAATCTTATACTCTGTGTTGTTAGATAATAAGTAAAAAGGAGCACTTTTACAAAATTGTTCGTCTCTAAGAGTTCAAATTGTTGATTTTAGGTTTATATGTGACTTTTTGTATCTTCGAGAGGAATCAATGGTTTGGGTGAGCTATAAGAGTCTAGAAGAGATTAAAATGGTTTATATAATCAATTCTATTCAAGAGAGGGATATTTTTGGGAGTTTGATATATGCTTGAGGATATGGTTAACGTATTCTAGAGTGTTAGAGCTGACGATCAGGGAAAGCTGTTTGAAGGAAATGTTTTACTTCAATGGCAAAGAGAGTTTGGTTAGATTTTAGGAGTTATTTGTAGTTTCATGGTAGTAAATTGTTTTCTGATTTTGATATGCATCAAATTTCCTTTATACAATTAATCTGTGTGCTCATCTTATAGCTGACTCTCTTTCTTATCCCTCCACATGTACACCAAGTTTACCTGCCTATGTTTACTTCTTCATTTGCTGAACTGTGTATACGTATGCATCTGCATTGAACACCAGCACATGTTGCTCTCTGTGACGGTGAAATTCATATTGTAATCGGGGAAGGAAGAAGGTTTAAATTTCTGGCAGAAATTATTCATGAATTTGCATCTTATGTTTAAGCATCTCTTGTTTAACATTATGAAGTAAAGTCTGGCAATATGTTCAACATGCATGCTCAAAGGAAGGTGCTCTATATTGTAGCAAGGTTTCTCATCATTTTTAAAAGTTTTCATTAATAGGAGTATGCATTGTGCTGGGAACCACCCAGACCTTGTTTACAGGTACTACTCCTGTTTCAATATGGAAGCTCAAATTTGTCTCCAGTAGTCCATTTCAAAAGGCTCCTTTAGCTCCTTGTATAAAGTGTGAGAACAAGGAAAAGAATCAGGGCTCTTTTGAGCAGGTGTCTGTCGAGCGTTTTCCTTATCACAGTTATATGGACTCCACTTCTGGGCAACTTGAACCAGCATCTGGAGCTCGCGCTAGTATTCCTGGGAAGGAGTACTGGCCAGAAGGCACAGCTAGTCGAGTTCAGGCCGCCAGGGCTCCTGAACCAGATGGTATTTCAACTGGAACTCCATCTTATGGAAAAGCTCCTGGAAGTAGAAGAAAGAAGTACAAGGCATCTGCTTCCTCTTCCCAGCCTTCAGAAATCAATGTAATTTCTGATGATCCTCTGGAGACTCCAGATAGTGTACCAGAAGAGCCAAAGGATCTTTCCTCAGAGTATGTCATTTATCAGCCTGAACAAGATGAAGAAGAGCTGACAGGCTATGAGCTAGATAAAAGACATGGACGGCCCCACCCATTTATTGATCCAAAGGTAAAGAAGGAAATAGAGAAGCCGCTTACTAGTGAAGAATTATGGTGGAATTGG</genome_strand>
        <mrna_strand>CAACTTCCTTGTATCAAG..........................................................................................ATAGAGGACTGAGAATTGTAGCCTCTACTGATGGATTTGTGCCTAGTATTTGCTGCCCTTATCGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTTTACAGGTACTACTCCTGTTTCAATATGGCAGCTCAAATTTGTCTCCAGTAGTCCATTTCAAAAGGCTCCTTTAGCTCCTTGTATAAAGTGTGAGAACAAGGAAAAGAATCAGGGTTCCTTTGAGCAGGTGTCTGTCGAGCGTTTCCCTTATCACAGTTATATGGACTCCACTTCTGGGCAACTTGAACCAGCATCTGGAGCTCGCGCTAGTATTCCTGGGAAGGAGTACTGGCCAGAAGGCACAGCTAGTCGAGTTCAGGCCGCCAGGGCTCCTGAACCAGATGGTATTTCAACTGGAACTCCATCTTATGGAAAAACTCCTGGAAGTAGAAGAAAGAAGTACAAGGCATCTGCTTCCACTTCCCAGCCTTCAGAAATCAATGTAATTTCTGATGATCCTCTGGAGACTCCAGATAATGTACCAGAAGAGCCAAAGGATCTTTCCTCAGAGTATGTCATTTATCAGCCTGAACAAGATGAAGAGGAGCTGACAGGCTATGAGCTGGATAAAAGACATGGACGGCCCCACCCATTTATTGATCCAAAGGCAAAGAAGGAAATAGAGAAGCCACTTACTAGTGAAGAACTATGGTGGAATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E407769" ref_strand="+" ref_description="SGN-E407769 [PPI-8-O24]">
      <seq>gtcaacttccttgtatcaagatagaggactgagaattgtagcctctactgatggatttgtgcctagtatttgctgcccttatcggaagacattgtttacaggtactactcctgtttcaatatggcagctcaaatttgtctccagtagtccatttcaaaaggctcctttagctccttgtataaagtgtgagaacaaggaaaagaatcagggttcctttgagcaggtgtctgtcgagcgtttcccttatcacagttatatggactccacttctgggcaacttgaaccagcatctggagctcgcgctagtattcctgggaaggagtactggccagaaggcacagctagtcgagttcaggccgccagggctcctgaaccagatggtatttcaactggaactccatcttatggaaaaactcctggaagtagacgaaagaagtacaaggcatctgcttccacttcccagccttcagaaatcaatgtaatttctgatgatcctctggagactccagataatgtaccagaagagccaaaggatctttcctcagagtatgtcatttatcagcctgaacaagatgaagaggagctgacaggctatgagctggataaaagacatggacggccccacccatttattgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="70792" stop="68614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70492" g_stop="70473" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70472" i_stop="70383" i_length="90">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70382" g_stop="70315" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="88" r_length="68" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70314" i_stop="69464" i_length="851">
            <donor d_prob="0.941" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69463" g_stop="68914" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="638" r_length="550" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E407769" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70492" e_stop="70473"/>
          <exon e_start="70382" e_stop="70315"/>
          <exon e_start="69463" e_stop="68914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAACTTCCTTGTATCAAGGTAACTGTGTTTTACTTGTTGCACCTTTGATTTTTGTAAAAATAATTCTTCTTCGCTTTGTAAAATTGGTTTTTTTTCTGTTATTTGCAGATAGAGGACTGAGAATTGTAGCCTCTACTGATGGATTTGTGCCAACTATTTGCTGCCCCTATCGGAAGGTGTTTTTAGATTATTATGAACTCCAACAAATCTTATTATGTTTGTTAATCACCACTGGAAGTAGAATCTTATACTCTGTGTTGTTAGATAATAAGTAAAAAGGAGCACTTTTACAAAATTGTTCGTCTCTAAGAGTTCAAATTGTTGATTTTAGGTTTATATGTGACTTTTTGTATCTTCGAGAGGAATCAATGGTTTGGGTGAGCTATAAGAGTCTAGAAGAGATTAAAATGGTTTATATAATCAATTCTATTCAAGAGAGGGATATTTTTGGGAGTTTGATATATGCTTGAGGATATGGTTAACGTATTCTAGAGTGTTAGAGCTGACGATCAGGGAAAGCTGTTTGAAGGAAATGTTTTACTTCAATGGCAAAGAGAGTTTGGTTAGATTTTAGGAGTTATTTGTAGTTTCATGGTAGTAAATTGTTTTCTGATTTTGATATGCATCAAATTTCCTTTATACAATTAATCTGTGTGCTCATCTTATAGCTGACTCTCTTTCTTATCCCTCCACATGTACACCAAGTTTACCTGCCTATGTTTACTTCTTCATTTGCTGAACTGTGTATACGTATGCATCTGCATTGAACACCAGCACATGTTGCTCTCTGTGACGGTGAAATTCATATTGTAATCGGGGAAGGAAGAAGGTTTAAATTTCTGGCAGAAATTATTCATGAATTTGCATCTTATGTTTAAGCATCTCTTGTTTAACATTATGAAGTAAAGTCTGGCAATATGTTCAACATGCATGCTCAAAGGAAGGTGCTCTATATTGTAGCAAGGTTTCTCATCATTTTTAAAAGTTTTCATTAATAGGAGTATGCATTGTGCTGGGAACCACCCAGACCTTGTTTACAGGTACTACTCCTGTTTCAATATGGAAGCTCAAATTTGTCTCCAGTAGTCCATTTCAAAAGGCTCCTTTAGCTCCTTGTATAAAGTGTGAGAACAAGGAAAAGAATCAGGGCTCTTTTGAGCAGGTGTCTGTCGAGCGTTTTCCTTATCACAGTTATATGGACTCCACTTCTGGGCAACTTGAACCAGCATCTGGAGCTCGCGCTAGTATTCCTGGGAAGGAGTACTGGCCAGAAGGCACAGCTAGTCGAGTTCAGGCCGCCAGGGCTCCTGAACCAGATGGTATTTCAACTGGAACTCCATCTTATGGAAAAGCTCCTGGAAGTAGAAGAAAGAAGTACAAGGCATCTGCTTCCTCTTCCCAGCCTTCAGAAATCAATGTAATTTCTGATGATCCTCTGGAGACTCCAGATAGTGTACCAGAAGAGCCAAAGGATCTTTCCTCAGAGTATGTCATTTATCAGCCTGAACAAGATGAAGAAGAGCTGACAGGCTATGAGCTAGATAAAAGACATGGACGGCCCCACCCATTTATTGATC</genome_strand>
        <mrna_strand>GTCAACTTCCTTGTATCAAG..........................................................................................ATAGAGGACTGAGAATTGTAGCCTCTACTGATGGATTTGTGCCTAGTATTTGCTGCCCTTATCGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTTTACAGGTACTACTCCTGTTTCAATATGGCAGCTCAAATTTGTCTCCAGTAGTCCATTTCAAAAGGCTCCTTTAGCTCCTTGTATAAAGTGTGAGAACAAGGAAAAGAATCAGGGTTCCTTTGAGCAGGTGTCTGTCGAGCGTTTCCCTTATCACAGTTATATGGACTCCACTTCTGGGCAACTTGAACCAGCATCTGGAGCTCGCGCTAGTATTCCTGGGAAGGAGTACTGGCCAGAAGGCACAGCTAGTCGAGTTCAGGCCGCCAGGGCTCCTGAACCAGATGGTATTTCAACTGGAACTCCATCTTATGGAAAAACTCCTGGAAGTAGACGAAAGAAGTACAAGGCATCTGCTTCCACTTCCCAGCCTTCAGAAATCAATGTAATTTCTGATGATCCTCTGGAGACTCCAGATAATGTACCAGAAGAGCCAAAGGATCTTTCCTCAGAGTATGTCATTTATCAGCCTGAACAAGATGAAGAGGAGCTGACAGGCTATGAGCTGGATAAAAGACATGGACGGCCCCACCCATTTATTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323449" ref_strand="+" ref_description="SGN-E323449 [cTOC-7-K4]">
      <seq>tcaacttccttgtatcaagatagaggactgagaattgtagcctctactgatggatttgtgccaactatttgctgcccctatcggaagaccttgtttacaggtactactcctgtttcaatatggaagctcaaatttgtctccagtagtccatttcaaaaggctcctttagctccttgtataaagtgtgagaacaaggaaaagaatcagggctcttttgagcaggtgtctgtcgagcgttttccttatcacagttatatggactccacttctgggcaacttgaaccagcatctggagctcgcgctagtattcctgggaaggagtactggccagaaggcacagctagtcgagttcaggccgccagggctcctgaaccagatggtatttcaactggaactccatcttatggaaaagctcctggaagtagaagaaagaagtacaagacatctgcttcctctgcccagccttcagaaatcaatgtaatttctgatgatcctctggagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="70791" stop="68748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70491" g_stop="70473" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70472" i_stop="70383" i_length="90">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70382" g_stop="70315" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="87" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70314" i_stop="69464" i_length="851">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69463" g_stop="69048" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="503" r_length="416" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E323449" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70491" e_stop="70473"/>
          <exon e_start="70382" e_stop="70315"/>
          <exon e_start="69463" e_stop="69048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTTCCTTGTATCAAGGTAACTGTGTTTTACTTGTTGCACCTTTGATTTTTGTAAAAATAATTCTTCTTCGCTTTGTAAAATTGGTTTTTTTTCTGTTATTTGCAGATAGAGGACTGAGAATTGTAGCCTCTACTGATGGATTTGTGCCAACTATTTGCTGCCCCTATCGGAAGGTGTTTTTAGATTATTATGAACTCCAACAAATCTTATTATGTTTGTTAATCACCACTGGAAGTAGAATCTTATACTCTGTGTTGTTAGATAATAAGTAAAAAGGAGCACTTTTACAAAATTGTTCGTCTCTAAGAGTTCAAATTGTTGATTTTAGGTTTATATGTGACTTTTTGTATCTTCGAGAGGAATCAATGGTTTGGGTGAGCTATAAGAGTCTAGAAGAGATTAAAATGGTTTATATAATCAATTCTATTCAAGAGAGGGATATTTTTGGGAGTTTGATATATGCTTGAGGATATGGTTAACGTATTCTAGAGTGTTAGAGCTGACGATCAGGGAAAGCTGTTTGAAGGAAATGTTTTACTTCAATGGCAAAGAGAGTTTGGTTAGATTTTAGGAGTTATTTGTAGTTTCATGGTAGTAAATTGTTTTCTGATTTTGATATGCATCAAATTTCCTTTATACAATTAATCTGTGTGCTCATCTTATAGCTGACTCTCTTTCTTATCCCTCCACATGTACACCAAGTTTACCTGCCTATGTTTACTTCTTCATTTGCTGAACTGTGTATACGTATGCATCTGCATTGAACACCAGCACATGTTGCTCTCTGTGACGGTGAAATTCATATTGTAATCGGGGAAGGAAGAAGGTTTAAATTTCTGGCAGAAATTATTCATGAATTTGCATCTTATGTTTAAGCATCTCTTGTTTAACATTATGAAGTAAAGTCTGGCAATATGTTCAACATGCATGCTCAAAGGAAGGTGCTCTATATTGTAGCAAGGTTTCTCATCATTTTTAAAAGTTTTCATTAATAGGAGTATGCATTGTGCTGGGAACCACCCAGACCTTGTTTACAGGTACTACTCCTGTTTCAATATGGAAGCTCAAATTTGTCTCCAGTAGTCCATTTCAAAAGGCTCCTTTAGCTCCTTGTATAAAGTGTGAGAACAAGGAAAAGAATCAGGGCTCTTTTGAGCAGGTGTCTGTCGAGCGTTTTCCTTATCACAGTTATATGGACTCCACTTCTGGGCAACTTGAACCAGCATCTGGAGCTCGCGCTAGTATTCCTGGGAAGGAGTACTGGCCAGAAGGCACAGCTAGTCGAGTTCAGGCCGCCAGGGCTCCTGAACCAGATGGTATTTCAACTGGAACTCCATCTTATGGAAAAGCTCCTGGAAGTAGAAGAAAGAAGTACAAGGCATCTGCTTCCTCTTCCCAGCCTTCAGAAATCAATGTAATTTCTGATGATCCTCTGGAGAC</genome_strand>
        <mrna_strand>TCAACTTCCTTGTATCAAG..........................................................................................ATAGAGGACTGAGAATTGTAGCCTCTACTGATGGATTTGTGCCAACTATTTGCTGCCCCTATCGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTTGTTTACAGGTACTACTCCTGTTTCAATATGGAAGCTCAAATTTGTCTCCAGTAGTCCATTTCAAAAGGCTCCTTTAGCTCCTTGTATAAAGTGTGAGAACAAGGAAAAGAATCAGGGCTCTTTTGAGCAGGTGTCTGTCGAGCGTTTTCCTTATCACAGTTATATGGACTCCACTTCTGGGCAACTTGAACCAGCATCTGGAGCTCGCGCTAGTATTCCTGGGAAGGAGTACTGGCCAGAAGGCACAGCTAGTCGAGTTCAGGCCGCCAGGGCTCCTGAACCAGATGGTATTTCAACTGGAACTCCATCTTATGGAAAAGCTCCTGGAAGTAGAAGAAAGAAGTACAAGACATCTGCTTCCTCTGCCCAGCCTTCAGAAATCAATGTAATTTCTGATGATCCTCTGGAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E450836" ref_strand="+" ref_description="SGN-E450836 [cSTS-10-J3]">
      <seq>agttatttattgcaatttcgagttgccagtttcagcaatggcttctgtattgtcaacttccttgtatcaagatagaggactgagaattgtagcctctactgatggatttgtgcctagtatttgctgcccttatcggaagacattgtttacaggtactactcctgtttcaatatggcagctcaaatttgtctccagtagtccatttcaaaaggctcctttagctccttgtataaagtgtgagaacaaggaaaagaatcagggttcctttgagcaggtgtctgtcgagcgtttcccttatcacagttatatggactccacttctgggcaacttgaaccagcatctggagctcgcgctagtattcctgggaaggagtactggccagaaggcacagctagtcgagttcaggccgccagggctcctgaaccagatggtatttcaactggaactccatcttatggaaaaactcctggaagtagacgaaagaagtacaaggcatctgcttccacttcccagccttcagaaatcaatgtaatttctgatgatcctctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="70843" stop="68752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70543" g_stop="70473" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70472" i_stop="70383" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70382" g_stop="70315" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="139" r_length="68" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70314" i_stop="69464" i_length="851">
            <donor d_prob="0.941" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69463" g_stop="69052" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="551" r_length="412" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E450836" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E450836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70543" e_stop="70473"/>
          <exon e_start="70382" e_stop="70315"/>
          <exon e_start="69463" e_stop="69052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTATTTATAGCAATTTCGAGTTGCCAATTTCAGCAATGGCTTCTGTATTGTCAACTTCCTTGTATCAAGGTAACTGTGTTTTACTTGTTGCACCTTTGATTTTTGTAAAAATAATTCTTCTTCGCTTTGTAAAATTGGTTTTTTTTCTGTTATTTGCAGATAGAGGACTGAGAATTGTAGCCTCTACTGATGGATTTGTGCCAACTATTTGCTGCCCCTATCGGAAGGTGTTTTTAGATTATTATGAACTCCAACAAATCTTATTATGTTTGTTAATCACCACTGGAAGTAGAATCTTATACTCTGTGTTGTTAGATAATAAGTAAAAAGGAGCACTTTTACAAAATTGTTCGTCTCTAAGAGTTCAAATTGTTGATTTTAGGTTTATATGTGACTTTTTGTATCTTCGAGAGGAATCAATGGTTTGGGTGAGCTATAAGAGTCTAGAAGAGATTAAAATGGTTTATATAATCAATTCTATTCAAGAGAGGGATATTTTTGGGAGTTTGATATATGCTTGAGGATATGGTTAACGTATTCTAGAGTGTTAGAGCTGACGATCAGGGAAAGCTGTTTGAAGGAAATGTTTTACTTCAATGGCAAAGAGAGTTTGGTTAGATTTTAGGAGTTATTTGTAGTTTCATGGTAGTAAATTGTTTTCTGATTTTGATATGCATCAAATTTCCTTTATACAATTAATCTGTGTGCTCATCTTATAGCTGACTCTCTTTCTTATCCCTCCACATGTACACCAAGTTTACCTGCCTATGTTTACTTCTTCATTTGCTGAACTGTGTATACGTATGCATCTGCATTGAACACCAGCACATGTTGCTCTCTGTGACGGTGAAATTCATATTGTAATCGGGGAAGGAAGAAGGTTTAAATTTCTGGCAGAAATTATTCATGAATTTGCATCTTATGTTTAAGCATCTCTTGTTTAACATTATGAAGTAAAGTCTGGCAATATGTTCAACATGCATGCTCAAAGGAAGGTGCTCTATATTGTAGCAAGGTTTCTCATCATTTTTAAAAGTTTTCATTAATAGGAGTATGCATTGTGCTGGGAACCACCCAGACCTTGTTTACAGGTACTACTCCTGTTTCAATATGGAAGCTCAAATTTGTCTCCAGTAGTCCATTTCAAAAGGCTCCTTTAGCTCCTTGTATAAAGTGTGAGAACAAGGAAAAGAATCAGGGCTCTTTTGAGCAGGTGTCTGTCGAGCGTTTTCCTTATCACAGTTATATGGACTCCACTTCTGGGCAACTTGAACCAGCATCTGGAGCTCGCGCTAGTATTCCTGGGAAGGAGTACTGGCCAGAAGGCACAGCTAGTCGAGTTCAGGCCGCCAGGGCTCCTGAACCAGATGGTATTTCAACTGGAACTCCATCTTATGGAAAAGCTCCTGGAAGTAGAAGAAAGAAGTACAAGGCATCTGCTTCCTCTTCCCAGCCTTCAGAAATCAATGTAATTTCTGATGATCCTCTGG</genome_strand>
        <mrna_strand>AGTTATTTATTGCAATTTCGAGTTGCCAGTTTCAGCAATGGCTTCTGTATTGTCAACTTCCTTGTATCAAG..........................................................................................ATAGAGGACTGAGAATTGTAGCCTCTACTGATGGATTTGTGCCTAGTATTTGCTGCCCTTATCGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGTTTACAGGTACTACTCCTGTTTCAATATGGCAGCTCAAATTTGTCTCCAGTAGTCCATTTCAAAAGGCTCCTTTAGCTCCTTGTATAAAGTGTGAGAACAAGGAAAAGAATCAGGGTTCCTTTGAGCAGGTGTCTGTCGAGCGTTTCCCTTATCACAGTTATATGGACTCCACTTCTGGGCAACTTGAACCAGCATCTGGAGCTCGCGCTAGTATTCCTGGGAAGGAGTACTGGCCAGAAGGCACAGCTAGTCGAGTTCAGGCCGCCAGGGCTCCTGAACCAGATGGTATTTCAACTGGAACTCCATCTTATGGAAAAACTCCTGGAAGTAGACGAAAGAAGTACAAGGCATCTGCTTCCACTTCCCAGCCTTCAGAAATCAATGTAATTTCTGATGATCCTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323078" ref_strand="+" ref_description="SGN-E323078 [cTOB-28-I2]">
      <seq>ttgtcaacttccttgtatcaagatagaggactgagaattgtagcctctactgatggatttgtgccaactatttgctgcccctatcggaagaccttgtttacaggtactactcctgtttcaatatggaagctcaaatttgtctccagtagtccatttcaaaaggctcctttagctccttgtataaagtgtgagaacaaggaaaagaatcagggctcttttgagcaggtgtctgtcgagcgttttccttatcacagttatatggactccacttctgggcaacttgaaccagcatctggagctcgcgctagtattcctgggaaggagtactggccagaaggcacagctagtcgagttcaggccgccagggctcctgaaccagatggtatttcaactggaactccatcttatggaaaagctcctggaagtagaagaaagaagtacnagacatctgcttcctcttcccagccttcagaaatcaatgtaatttctgatgatcctctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="70794" stop="68752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70494" g_stop="70473" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70472" i_stop="70383" i_length="90">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70382" g_stop="70315" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="90" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70314" i_stop="69464" i_length="851">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69463" g_stop="69052" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="502" r_length="412" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E323078" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70494" e_stop="70473"/>
          <exon e_start="70382" e_stop="70315"/>
          <exon e_start="69463" e_stop="69052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCAACTTCCTTGTATCAAGGTAACTGTGTTTTACTTGTTGCACCTTTGATTTTTGTAAAAATAATTCTTCTTCGCTTTGTAAAATTGGTTTTTTTTCTGTTATTTGCAGATAGAGGACTGAGAATTGTAGCCTCTACTGATGGATTTGTGCCAACTATTTGCTGCCCCTATCGGAAGGTGTTTTTAGATTATTATGAACTCCAACAAATCTTATTATGTTTGTTAATCACCACTGGAAGTAGAATCTTATACTCTGTGTTGTTAGATAATAAGTAAAAAGGAGCACTTTTACAAAATTGTTCGTCTCTAAGAGTTCAAATTGTTGATTTTAGGTTTATATGTGACTTTTTGTATCTTCGAGAGGAATCAATGGTTTGGGTGAGCTATAAGAGTCTAGAAGAGATTAAAATGGTTTATATAATCAATTCTATTCAAGAGAGGGATATTTTTGGGAGTTTGATATATGCTTGAGGATATGGTTAACGTATTCTAGAGTGTTAGAGCTGACGATCAGGGAAAGCTGTTTGAAGGAAATGTTTTACTTCAATGGCAAAGAGAGTTTGGTTAGATTTTAGGAGTTATTTGTAGTTTCATGGTAGTAAATTGTTTTCTGATTTTGATATGCATCAAATTTCCTTTATACAATTAATCTGTGTGCTCATCTTATAGCTGACTCTCTTTCTTATCCCTCCACATGTACACCAAGTTTACCTGCCTATGTTTACTTCTTCATTTGCTGAACTGTGTATACGTATGCATCTGCATTGAACACCAGCACATGTTGCTCTCTGTGACGGTGAAATTCATATTGTAATCGGGGAAGGAAGAAGGTTTAAATTTCTGGCAGAAATTATTCATGAATTTGCATCTTATGTTTAAGCATCTCTTGTTTAACATTATGAAGTAAAGTCTGGCAATATGTTCAACATGCATGCTCAAAGGAAGGTGCTCTATATTGTAGCAAGGTTTCTCATCATTTTTAAAAGTTTTCATTAATAGGAGTATGCATTGTGCTGGGAACCACCCAGACCTTGTTTACAGGTACTACTCCTGTTTCAATATGGAAGCTCAAATTTGTCTCCAGTAGTCCATTTCAAAAGGCTCCTTTAGCTCCTTGTATAAAGTGTGAGAACAAGGAAAAGAATCAGGGCTCTTTTGAGCAGGTGTCTGTCGAGCGTTTTCCTTATCACAGTTATATGGACTCCACTTCTGGGCAACTTGAACCAGCATCTGGAGCTCGCGCTAGTATTCCTGGGAAGGAGTACTGGCCAGAAGGCACAGCTAGTCGAGTTCAGGCCGCCAGGGCTCCTGAACCAGATGGTATTTCAACTGGAACTCCATCTTATGGAAAAGCTCCTGGAAGTAGAAGAAAGAAGTACAAGGCATCTGCTTCCTCTTCCCAGCCTTCAGAAATCAATGTAATTTCTGATGATCCTCTGG</genome_strand>
        <mrna_strand>TTGTCAACTTCCTTGTATCAAG..........................................................................................ATAGAGGACTGAGAATTGTAGCCTCTACTGATGGATTTGTGCCAACTATTTGCTGCCCCTATCGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTTGTTTACAGGTACTACTCCTGTTTCAATATGGAAGCTCAAATTTGTCTCCAGTAGTCCATTTCAAAAGGCTCCTTTAGCTCCTTGTATAAAGTGTGAGAACAAGGAAAAGAATCAGGGCTCTTTTGAGCAGGTGTCTGTCGAGCGTTTTCCTTATCACAGTTATATGGACTCCACTTCTGGGCAACTTGAACCAGCATCTGGAGCTCGCGCTAGTATTCCTGGGAAGGAGTACTGGCCAGAAGGCACAGCTAGTCGAGTTCAGGCCGCCAGGGCTCCTGAACCAGATGGTATTTCAACTGGAACTCCATCTTATGGAAAAGCTCCTGGAAGTAGAAGAAAGAAGTACNAGACATCTGCTTCCTCTTCCCAGCCTTCAGAAATCAATGTAATTTCTGATGATCCTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365288" ref_strand="+" ref_description="SGN-E365288 [cLPT-2-K1]">
      <seq>agcaaaggacaaaggataagaggagttatttatagcaatttcgagttgccaatttcagcaatggcttctgtattatcaacttccttgtatcaagatagaggactgagaattgtagcctctactgatggatttgtgccaactttttgctgcccctatcggaagaccttgtttacaggtactactcctgtttcaatatggaagctcaaatttgtctccagtagtccatttcaaaaggctcctttagctccttgtataaagtgtgagaacaaggaaaagaatcagggctcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="70866" stop="69036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70566" g_stop="70473" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70472" i_stop="70383" i_length="90">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70382" g_stop="70315" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="162" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70314" i_stop="69464" i_length="851">
            <donor d_prob="0.941" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69463" g_stop="69336" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="290" r_length="128" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E365288" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70566" e_stop="70473"/>
          <exon e_start="70382" e_stop="70315"/>
          <exon e_start="69463" e_stop="69336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAAGGACAAAGGATAAGAGGAGTTATTTATAGCAATTTCGAGTTGCCAATTTCAGCAATGGCTTCTGTATTGTCAACTTCCTTGTATCAAGGTAACTGTGTTTTACTTGTTGCACCTTTGATTTTTGTAAAAATAATTCTTCTTCGCTTTGTAAAATTGGTTTTTTTTCTGTTATTTGCAGATAGAGGACTGAGAATTGTAGCCTCTACTGATGGATTTGTGCCAACTATTTGCTGCCCCTATCGGAAGGTGTTTTTAGATTATTATGAACTCCAACAAATCTTATTATGTTTGTTAATCACCACTGGAAGTAGAATCTTATACTCTGTGTTGTTAGATAATAAGTAAAAAGGAGCACTTTTACAAAATTGTTCGTCTCTAAGAGTTCAAATTGTTGATTTTAGGTTTATATGTGACTTTTTGTATCTTCGAGAGGAATCAATGGTTTGGGTGAGCTATAAGAGTCTAGAAGAGATTAAAATGGTTTATATAATCAATTCTATTCAAGAGAGGGATATTTTTGGGAGTTTGATATATGCTTGAGGATATGGTTAACGTATTCTAGAGTGTTAGAGCTGACGATCAGGGAAAGCTGTTTGAAGGAAATGTTTTACTTCAATGGCAAAGAGAGTTTGGTTAGATTTTAGGAGTTATTTGTAGTTTCATGGTAGTAAATTGTTTTCTGATTTTGATATGCATCAAATTTCCTTTATACAATTAATCTGTGTGCTCATCTTATAGCTGACTCTCTTTCTTATCCCTCCACATGTACACCAAGTTTACCTGCCTATGTTTACTTCTTCATTTGCTGAACTGTGTATACGTATGCATCTGCATTGAACACCAGCACATGTTGCTCTCTGTGACGGTGAAATTCATATTGTAATCGGGGAAGGAAGAAGGTTTAAATTTCTGGCAGAAATTATTCATGAATTTGCATCTTATGTTTAAGCATCTCTTGTTTAACATTATGAAGTAAAGTCTGGCAATATGTTCAACATGCATGCTCAAAGGAAGGTGCTCTATATTGTAGCAAGGTTTCTCATCATTTTTAAAAGTTTTCATTAATAGGAGTATGCATTGTGCTGGGAACCACCCAGACCTTGTTTACAGGTACTACTCCTGTTTCAATATGGAAGCTCAAATTTGTCTCCAGTAGTCCATTTCAAAAGGCTCCTTTAGCTCCTTGTATAAAGTGTGAGAACAAGGAAAAGAATCAGGGCTCTTT</genome_strand>
        <mrna_strand>AGCAAAGGACAAAGGATAAGAGGAGTTATTTATAGCAATTTCGAGTTGCCAATTTCAGCAATGGCTTCTGTATTATCAACTTCCTTGTATCAAG..........................................................................................ATAGAGGACTGAGAATTGTAGCCTCTACTGATGGATTTGTGCCAACTTTTTGCTGCCCCTATCGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTTGTTTACAGGTACTACTCCTGTTTCAATATGGAAGCTCAAATTTGTCTCCAGTAGTCCATTTCAAAAGGCTCCTTTAGCTCCTTGTATAAAGTGTGAGAACAAGGAAAAGAATCAGGGCTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427150" ref_strand="+" ref_description="SGN-E427150 [STM-47-J18]">
      <seq>gttgtacagttccactccagttgtgagagtactgtacaggagtggaactgttgtaactctcacaactggaagttctgtcaatatggatgtatggaagactatttcacggctcattatcagtctccacgacagatgttctgtctgtggaacaatttgctcaagggtaaggcccattgctgcaacttttaaagtgatatgaccattttttgctgcttgatgggcgcgcaatttgaattgcatcatcttcttcctaccttgagatcttacgcgaagaaatgaaggtgtgttgttgtatctgttcagatggctgttttagtttaacatatgatttaacatggaacattggtcatcgccatggatttgtacatccggatttatatactgtgtactagtcgttgtataggattcgtgcctctccgtcttgtaccatgaagaaacatagagagatttgatattgagctgagcctccctccccactaccataanttttgggttggggccttcacacttatgtttgtccttaatgatatatatgaagcttttcctctggcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="72593" stop="71496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72292" g_stop="71800" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="549" r_length="495" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71799" i_stop="71600" i_length="200">
            <donor d_prob="0.046" d_score="0.90"/>
            <acceptor a_prob="0.962" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71599" g_stop="71586" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="563" r_length="14" r_score="0.643"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E427150" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72292" e_stop="71800"/>
          <exon e_start="71599" e_stop="71586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTCTCACAACTGGAAGTTCTGTCAATATGGGTGTATGGAAGACTATTTCACGGCTCATTATCAGTCTCCACGACAGATGTTCTGTCTGTGGAACAATTTACTCAAGGGTAAGGCCCATTGCTGCAACTTCTAGAGTGATATGACCATTTTTCGCTGCTTGATGGACGCACAATTTGAATTGCATCATCTTCTTCCTGCCTTGAGATCTTACGCGAAGAAATGAAGGTGTGTGTTGTTGTATCTGTTCAGATGGCTGTTTTAGCTTAACATATGATTTAACATGGAACATTGGCCATCGCGATGGATTTGTACATCCGGATTTATATACTGTGTACTAGTCATTGTATAGGATTCATGCCTCTCCGCCTTGTACCATGAAGAAACATACAGCGATTTGATATTGAGCTGAG----CCTCCCCACTATCATAA-TTTTGGGTTGGGGCCTTCACAGTTATGTTTGTCCTTTAACGCTATATATGAAGCTTTTCTTCTGGCAATGTCAACATTACTTGCTCTTGCTCCTTCAAATTTTACATTTGATACTATTTCATTAACCCAGTACTAGTATTTTAATTTGAAATGATATACTATGAGTTCATCTTCATATTGATTGACTTTAATTAGAATGCTATAAATTATGATGATTAAATTTCACAAACATTTGTGTAACAACATATACTATATTTTCATCAGGTGGATAAATAAAA</genome_strand>
        <mrna_strand>AACTCTCACAACTGGAAGTTCTGTCAATATGGATGTATGGAAGACTATTTCACGGCTCATTATCAGTCTCCACGACAGATGTTCTGTCTGTGGAACAATTTGCTCAAGGGTAAGGCCCATTGCTGCAACTTTTAAAGTGATATGACCATTTTTTGCTGCTTGATGGGCGCGCAATTTGAATTGCATCATCTTCTTCCTACCTTGAGATCTTACGCGAAGAAATGAA-G-GTGTGTTGTTGTATCTGTTCAGATGGCTGTTTTAGTTTAACATATGATTTAACATGGAACATTGGTCATCGCCATGGATTTGTACATCCGGATTTATATACTGTGTACTAGTCGTTGTATAGGATTCGTGCCTCTCCGTCTTGTACCATGAAGAAACATAGAGAGATTTGATATTGAGCTGAGCCTCCCTCCCCACTACCATAANTTTTGGGTTGGGGCCTTCACACTTATGTTTGTCC-TTAATGATATATATGAAGCTTTTCCTCTG........................................................................................................................................................................................................GCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E485326" ref_strand="+" ref_description="SGN-E485326 [cSTE-17-D13]">
      <seq>gttgtacagttccactccagttgtgagagtactgtacaggagtggaactgttgtaactctcacaactggaagttctgtcaatatggatgtatggaagactatttcacggctcattatcagtctccacgacagatgttctgtctgtggaacaatttgctcaagggtaaggcccattgctgcaacttttaaagtgatatgaccattttttgctgcttgatgggcgcgcaatttgaattgcatcatcttcttcctaccttgagatcttacgcgaagaaatgaaggtgtgttgttgtatctgttcagatggctgttttagtttaacatatgatttaacatggaacattggtcatcgccatggatttgtacatccggatttatatactgtgtactagtcgttgtataggattcgtgcctctccgtcttgtaccatgaagaaacatagagagatttgatattgagctgagcctccctccccactaccataattttgggttggggccttcacacttatgtttgtccttaatgatatatatgaagcttttcctctggcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="72593" stop="71496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72292" g_stop="71787" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="561" r_length="507" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E485326" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72292" e_stop="71787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTCTCACAACTGGAAGTTCTGTCAATATGGGTGTATGGAAGACTATTTCACGGCTCATTATCAGTCTCCACGACAGATGTTCTGTCTGTGGAACAATTTACTCAAGGGTAAGGCCCATTGCTGCAACTTCTAGAGTGATATGACCATTTTTCGCTGCTTGATGGACGCACAATTTGAATTGCATCATCTTCTTCCTGCCTTGAGATCTTACGCGAAGAAATGAAGGTGTGTGTTGTTGTATCTGTTCAGATGGCTGTTTTAGCTTAACATATGATTTAACATGGAACATTGGCCATCGCGATGGATTTGTACATCCGGATTTATATACTGTGTACTAGTCATTGTATAGGATTCATGCCTCTCCGCCTTGTACCATGAAGAAACATACAGCGATTTGATATTGAGCTGAG----CCTCCCCACTATCATAATTTTGGGTTGGGGCCTTCACAGTTATGTTTGTCCTTTAACGCTATATATGAAGCTTTTCTTCTGGCAATGTCAACAT</genome_strand>
        <mrna_strand>AACTCTCACAACTGGAAGTTCTGTCAATATGGATGTATGGAAGACTATTTCACGGCTCATTATCAGTCTCCACGACAGATGTTCTGTCTGTGGAACAATTTGCTCAAGGGTAAGGCCCATTGCTGCAACTTTTAAAGTGATATGACCATTTTTTGCTGCTTGATGGGCGCGCAATTTGAATTGCATCATCTTCTTCCTACCTTGAGATCTTACGCGAAGAAATGAA-G-GTGTGTTGTTGTATCTGTTCAGATGGCTGTTTTAGTTTAACATATGATTTAACATGGAACATTGGTCATCGCCATGGATTTGTACATCCGGATTTATATACTGTGTACTAGTCGTTGTATAGGATTCGTGCCTCTCCGTCTTGTACCATGAAGAAACATAGAGAGATTTGATATTGAGCTGAGCCTCCCTCCCCACTACCATAATTTTGGGTTGGGGCCTTCACACTTATGTTTGTCC-TTAATGATATATATGAAGCTTTTCCTCTGGCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348871" ref_strand="+" ref_description="SGN-E348871 [cTOF-29-N2]">
      <seq>aatgtgacgatgatactttcattaggatagatgcagtccttagagaaattcaacgtgtccctcctagacgatctctttacatgggcaatcttaatctcttgcatagaccacttcgaacaggaaagtgggcagtaacttttgaggagtggccagaagatgtataccccccttatgctaatggaccaggatatataattacaagtgatattgccaaacatatcacttctcaatatcggaaccaaagcttgcggatcttcaaaatggaggatgtgagcatgggtatgtgggttgagagttacaacagttcaactcctgtacactactctcacaactggaagttctgtcaatatgggtgtatggaagactatttcacggctcattatcagtctccacgacagatgttctgtctgtggaacaatttactcaagggtaaggcccattgctgcaacttctagagtgatatgaccatttttcgctgcttgatggacgcacaatttgaattgcatcatcttcttcctgccttgagatcttacgcgaagaatgaaggtgtgtgttggtgtatctgttcagatggctgttttagcttaacatatgatttaacatggaacattggccatcgcgatggatttgtacatccggatttatatactgtgtactagtcattgtataggattcatgcctcntcgncttgtaccatgaagaacatacagcgatttgatattgagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="73111" stop="71583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72811" g_stop="72669" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72668" i_stop="72564" i_length="105">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72563" g_stop="72456" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="251" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72455" i_stop="72362" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.668" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72361" g_stop="71883" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="728" r_length="477" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E348871" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72811" e_stop="72669"/>
          <exon e_start="72563" e_stop="72456"/>
          <exon e_start="72361" e_stop="71883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTGACGATGATACTTTCATTAGGATAGATGCAGTCCTTAGAGAAATTCAACGTGTCCCTCCTAGACGATCTCTTTACATGGGCAATCTTAATCTCTTGCATAGACCACTTCGAACAGGAAAGTGGGCAGTAACTTTTGAGGTACAGAGATTTATATGATAATAGAGTTATTCAAAATCATGGCTACTGTTTGTTGATTTCTTATAGACACTAAAGCTAATTTGAAAATATTGACTTGTGCAACAGGAGTGGCCAGAAGATGTATACCCCCCTTATGCTAATGGACCAGGATATATAATTACAAGTGATATTGCCAAACATATCACTTCTCAATATCGGAACCAAAGCTTGCGGGTTTGTAACAGTTTATTTCTTTCGTTTTCTTCTTAATCATAAACCTGTTCAAAGTGTAGACTCTGAAATACGCATTCCCCCATCAAATTGACAGATCTTCAAAATGGAGGATGTGAGCATGGGTATGTGGGTTGAGAGTTACAACAGTTCAACTCCTGTACAGTACTCTCACAACTGGAAGTTCTGTCAATATGGGTGTATGGAAGACTATTTCACGGCTCATTATCAGTCTCCACGACAGATGTTCTGTCTGTGGAACAATTTACTCAAGGGTAAGGCCCATTGCTGCAACTTCTAGAGTGATATGACCATTTTTCGCTGCTTGATGGACGCACAATTTGAATTGCATCATCTTCTTCCTGCCTTGAGATCTTACGCGAAGAAATGAAGGTGTGTGTTGTTGTATCTGTTCAGATGGCTGTTTTAGCTTAACATATGATTTAACATGGAACATTGGCCATCGCGATGGATTTGTACATCCGGATTTATATACTGTGTACTAGTCATTGTATAGGATTCATGCCTCTCCGCCTTGTACCATGAAGAAACATACAGCGATTTGATATTGAGCTG</genome_strand>
        <mrna_strand>AATGTGACGATGATACTTTCATTAGGATAGATGCAGTCCTTAGAGAAATTCAACGTGTCCCTCCTAGACGATCTCTTTACATGGGCAATCTTAATCTCTTGCATAGACCACTTCGAACAGGAAAGTGGGCAGTAACTTTTGAG.........................................................................................................GAGTGGCCAGAAGATGTATACCCCCCTTATGCTAATGGACCAGGATATATAATTACAAGTGATATTGCCAAACATATCACTTCTCAATATCGGAACCAAAGCTTGCGG..............................................................................................ATCTTCAAAATGGAGGATGTGAGCATGGGTATGTGGGTTGAGAGTTACAACAGTTCAACTCCTGTACACTACTCTCACAACTGGAAGTTCTGTCAATATGGGTGTATGGAAGACTATTTCACGGCTCATTATCAGTCTCCACGACAGATGTTCTGTCTGTGGAACAATTTACTCAAGGGTAAGGCCCATTGCTGCAACTTCTAGAGTGATATGACCATTTTTCGCTGCTTGATGGACGCACAATTTGAATTGCATCATCTTCTTCCTGCCTTGAGATCTTACGCGAAG-AATGAAGGTGTGTGTTGGTGTATCTGTTCAGATGGCTGTTTTAGCTTAACATATGATTTAACATGGAACATTGGCCATCGCGATGGATTTGTACATCCGGATTTATATACTGTGTACTAGTCATTGTATAGGATTCATGCCTCNTCGNCTTGTACCATGAAG-AACATACAGCGATTTGATATTGAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331386" ref_strand="+" ref_description="SGN-E331386 [cTOD-9-M10]">
      <seq>gcatatatcatgaaatgtgacgatgatacttgcattaggatagatgcagtccttagagaaattcaacgtgtccctcctagacgatctctttacatgggcaatcttaatctcttgcatagaccacttcgaacaggaaagtgggcagtaacttttgaggagtggccagaagatgtataccccccttatgctaatggaccaggatatataattacaagtgatattgccaaacatatcacttctcaatatcggaaccaaagcttgcggatcttcaaaatggaggatgtgagcatgggtatgtgggttgagagttacaacagttcaactcctgtacagtactctcacaactggaagttctgtcaatatgggtgtatggaagactatttcacggctcattatcagtctccacgacagatgttctgtctgtggaacaatttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="73124" stop="71889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72824" g_stop="72669" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72668" i_stop="72564" i_length="105">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72563" g_stop="72456" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="264" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72455" i_stop="72362" i_length="94">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.668" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72361" g_stop="72189" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="437" r_length="173" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E331386" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72824" e_stop="72669"/>
          <exon e_start="72563" e_stop="72456"/>
          <exon e_start="72361" e_stop="72189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATATATCATGAAATGTGACGATGATACTTTCATTAGGATAGATGCAGTCCTTAGAGAAATTCAACGTGTCCCTCCTAGACGATCTCTTTACATGGGCAATCTTAATCTCTTGCATAGACCACTTCGAACAGGAAAGTGGGCAGTAACTTTTGAGGTACAGAGATTTATATGATAATAGAGTTATTCAAAATCATGGCTACTGTTTGTTGATTTCTTATAGACACTAAAGCTAATTTGAAAATATTGACTTGTGCAACAGGAGTGGCCAGAAGATGTATACCCCCCTTATGCTAATGGACCAGGATATATAATTACAAGTGATATTGCCAAACATATCACTTCTCAATATCGGAACCAAAGCTTGCGGGTTTGTAACAGTTTATTTCTTTCGTTTTCTTCTTAATCATAAACCTGTTCAAAGTGTAGACTCTGAAATACGCATTCCCCCATCAAATTGACAGATCTTCAAAATGGAGGATGTGAGCATGGGTATGTGGGTTGAGAGTTACAACAGTTCAACTCCTGTACAGTACTCTCACAACTGGAAGTTCTGTCAATATGGGTGTATGGAAGACTATTTCACGGCTCATTATCAGTCTCCACGACAGATGTTCTGTCTGTGGAACAATTTACT</genome_strand>
        <mrna_strand>GCATATATCATGAAATGTGACGATGATACTTGCATTAGGATAGATGCAGTCCTTAGAGAAATTCAACGTGTCCCTCCTAGACGATCTCTTTACATGGGCAATCTTAATCTCTTGCATAGACCACTTCGAACAGGAAAGTGGGCAGTAACTTTTGAG.........................................................................................................GAGTGGCCAGAAGATGTATACCCCCCTTATGCTAATGGACCAGGATATATAATTACAAGTGATATTGCCAAACATATCACTTCTCAATATCGGAACCAAAGCTTGCGG..............................................................................................ATCTTCAAAATGGAGGATGTGAGCATGGGTATGTGGGTTGAGAGTTACAACAGTTCAACTCCTGTACAGTACTCTCACAACTGGAAGTTCTGTCAATATGGGTGTATGGAAGACTATTTCACGGCTCATTATCAGTCTCCACGACAGATGTTCTGTCTGTGGAACAATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E414649" ref_strand="+" ref_description="SGN-E414649 [STM-19-L12]">
      <seq>ttatgctacatctcttccaacctctcatccaagtttttctccccaaagagtgttggatttctcagaagaagtggaaatctcttcctttaccccagaatcgcattcaacttttcatttggggtgctttctgccaccaatcactttgctgagcgtatggcaatcaggaaaacatggatgcaggcttcagcaatcaaatcctcagacatagcagtccgcttctttgttgctttgaatccacgaaaggagttaaatgctatattgaagaaggaagcagattactttggggacattgtgattgtcccctttatcgatagatacgagctagtggttcttaaaactattgccatctgcaagtatggggttcagaatgtgacagctgcatatatcatgaaatgtgacgatgatactttcattaggatagatgcagtcctaagagaaattcaacgtgtccctcctagacgatctctttacatgggcaatcttaatctcttgcatagaccacttcgtacaggaaaatgggccgtaacttttgaggagtggccagaagatgtataccccccttatgctaatgggccaggatatataattacaagtgatattgccaaacatatcatttctcaatatcggaaccaaagcttgcggattttcaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="75301" stop="72146"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75001" g_stop="74773" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74772" i_stop="73067" i_length="1706">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73066" g_stop="72938" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="360" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72937" i_stop="72843" i_length="95">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72842" g_stop="72669" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="534" r_length="174" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72668" i_stop="72564" i_length="105">
            <donor d_prob="0.863" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72563" g_stop="72456" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="642" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="72455" i_stop="72362" i_length="94">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.668" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72361" g_stop="72351" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="653" r_length="11" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E414649" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E414649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75001" e_stop="74773"/>
          <exon e_start="73066" e_stop="72938"/>
          <exon e_start="72842" e_stop="72669"/>
          <exon e_start="72563" e_stop="72456"/>
          <exon e_start="72361" e_stop="72351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGCTACATCTCTTCCAACCTCTCATCCAAGTTTTTCTCCCCAAAGAGTGTTGGATTTCTCAG-AGAAGTGGAAATCTCTTCCTTTACCCAAGAATCGCATTCAACTTTTCA-TTGGGGTGCTTTCTGCCACCAATCACTTTGCTGAGCGTATGGCAATCAGGAAAACATGGATGCAGGCTTCAGCAATCAAATCCTCAGACATAGCAGTCCGCTTCTTTGTTGCTTTGGTAAGTTGCATCCCTCACCCAAATATTCCTTGGAGAGTAAAAATACATGCATGTTAACTTTGTGCATCCAAATATGTTTGCACCCCAGATGCAGTCATATTCCTTGTAATCACAATATTTCAAGCTCCTCCAATGAGCTGCCACTCTGACATGAGGTGATTAAGGAGATTGTCAAATGATAGGTCATGAAACATCTTTTTTTTTTTTAATAAAAAAGATGTTTCTTTGAACTGCTTTATTAATGCATTTATTTTTTCCTTTATCAAAAAGTTAGATATTATCATAGCAAAGATGTATAGTAAATACATACACATACATTGTGTTTGTGTGCGTATACATCATGTGGCTATTGAATTAGATAGTGAAAAGAAAAAAAATAGACCTACAATGCGCTAATCTAATGAGACATGAAGCTTGATGACAAAGCTCAATTCATAAATCATTACTGAAGAGAATAACAATGGATAATAAATGAAAAACATAGCAAAACTGGTTCACTGTTGCCTGGGTTGTGGGAAATGTCTAATGTTGTCAAATAACCTGGGGACAGTTCAATATAAGTTGAGTAAAATAGAGGTGATGGCCATGGGTATGCCATCTGTATCTTATATCGACAGGAGGGTCATTACTTCTAGCCAATAAACTCTCCTCCCATGTTCCAGTTGAAGTTAAAGTTGTGATTTCCATCATTCAAAGGAAATTAGATAAGGGTGTGCCCAGATCCTGAAAGAATTTACACTTCACCAGTTCACCTTATCGAAAGAAAAATACTAGAAAGAATTTGCTGTTTCCTTATGGGAACTTTCTGATTTCATTTTCCTCTCTCTGTCTTCCTCTCTTCCATGCTCCAACTGCTCATTAGACTTCGTTGGAATATAAGGAGTTCCTCATCATCATTGAGACATTTGACTAAAAACACTCTTGATGTTTCATGCAGCTAGAAGCCCCCAAATTTCAAAACTAACAAATATTAAAATGTACGCAGACAGAAACCAAGAGGATGATCAATGTGTTGTGTATCTAGTGCCAATTACTCTGCTTCTAAAAATACAGTTAGGGAACCCTAAAATTTGGCGCCGTGTCAATAAAGAACTTGAATGTATCTTCTCAAAAATTAAAGAGCTTGATTGTATAATGTGGCTATTCTGTAAGAACTATATTCAACTTTTTCCAATAAAAATACTACAAAATCTCATGTTGCGATAGCATATTTTGTCATAAACTCTGGCACAACTACTGTATTCATTAGTAGCTGGATAATAGATGTCAATATAATCACCCCTTTGTATTTGCCTACTTGGAAGATCCTTCAATCTTCATGGCTATCCCTGGAGCACAATGCACGCTTGTTACATTACATAGTTTATCATCTTTTGGGAGGTATTAACTTGCCGTACTATTCACTTGGAAGCATTCTTGCCATTTCTATCCTAGGATTTCTGAGGCGCTTTCATTTGAATATCTCATATATAAATGATGGTCAAACGAAAGTAGTGTTGCTTTCAGGTAAAGGAGAAAATTTATGAACAGGAAAAAGGTTGTGCTATTGTCCTCAGTACTACTTTATGCTGTTCTGCAAACACCGCTCTTTAGTTTTCCTTCACCAACTTATTTGTTTGTCGAACTTGCGCTATTATCTCTGCCAATAGCCAGTTTGGAATTCAACCTCAACAGATGTACTTATGTATTAACATTTAACTGTGTAGAATCCACGAAAGGAGCTAAATGCTATATTGAAGAAGGAAGCAGATTACTTTGGGGACATTGTGATTGTCCCCTTTATCGATAGATACGAGCTAGTGGTTCTTAAAACTATTGCCATCTGCAAGTATGGGGTGAGTTCTGCACTTCGCTCCATCTTCCTCTACTTCTCTAGACTGCTCAGTTGTGTCCTAATTTCTATCGACATGGCCCACAATATCTGTTGCAGGTTCAGAATGTGACAGCTGCATATATCATGAAATGTGACGATGATACTTTCATTAGGATAGATGCAGTCCTTAGAGAAATTCAACGTGTCCCTCCTAGACGATCTCTTTACATGGGCAATCTTAATCTCTTGCATAGACCACTTCGAACAGGAAAGTGGGCAGTAACTTTTGAGGTACAGAGATTTATATGATAATAGAGTTATTCAAAATCATGGCTACTGTTTGTTGATTTCTTATAGACACTAAAGCTAATTTGAAAATATTGACTTGTGCAACAGGAGTGGCCAGAAGATGTATACCCCCCTTATGCTAATGGACCAGGATATATAATTACAAGTGATATTGCCAAACATATCACTTCTCAATATCGGAACCAAAGCTTGCGGGTTTGTAACAGTTTATTTCTTTCGTTTTCTTCTTAATCATAAACCTGTTCAAAGTGTAGACTCTGAAATACGCATTCCCCCATCAAATTGACAGATCTTCAAAAT</genome_strand>
        <mrna_strand>TTATGCTACATCTCTTCCAACCTCTCATCCAAGTTTTTCTCCCCAAAGAGTGTTGGATTTCTCAGAAGAAGTGGAAATCTCTTCCTTTACCCCAGAATCGCATTCAACTTTTCATTTGGGGTGCTTTCTGCCACCAATCACTTTGCTGAGCGTATGGCAATCAGGAAAACATGGATGCAGGCTTCAGCAATCAAATCCTCAGACATAGCAGTCCGCTTCTTTGTTGCTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCACGAAAGGAGTTAAATGCTATATTGAAGAAGGAAGCAGATTACTTTGGGGACATTGTGATTGTCCCCTTTATCGATAGATACGAGCTAGTGGTTCTTAAAACTATTGCCATCTGCAAGTATGGG...............................................................................................GTTCAGAATGTGACAGCTGCATATATCATGAAATGTGACGATGATACTTTCATTAGGATAGATGCAGTCCTAAGAGAAATTCAACGTGTCCCTCCTAGACGATCTCTTTACATGGGCAATCTTAATCTCTTGCATAGACCACTTCGTACAGGAAAATGGGCCGTAACTTTTGAG.........................................................................................................GAGTGGCCAGAAGATGTATACCCCCCTTATGCTAATGGGCCAGGATATATAATTACAAGTGATATTGCCAAACATATCATTTCTCAATATCGGAACCAAAGCTTGCGG..............................................................................................ATTTTCAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E251306" ref_strand="+" ref_description="SGN-E251306 [cLEG-10-H22]">
      <seq>accatatcaatgttggtgggcggcatgtgacttcatttccatatcgaactggatgcacactggaagatgctacagggttggcaatcagaggtgacgtagatatacattcggtttatgctacatctcttccaacctctcatccaagtttttctccccaaagagtgttggatttctcagagaagtggaaatctcttcctttacccaagaatcgcattcaacttttcattggggtgctttctgccaccaatcactttgctgagcgtatggcaatcaggaaaacatggatgcaggcttcagcaatcaaatcctcagacatagcagtccgcttctttgttgctttgaatccacgaaaggagctaaatgctatattgaagaaggaagcagattactttggggacattgtgattgtcccctttatcgatagatacgagctagtggttcttaaaactattgccatctgcaagtatggggttcagaatgtgacagctgcatatatcatgaaatgtgacgatgatactttcattaggatagatgcagtccttagagaaattcaacgtgtccctcctagacgatctctttacatgggcaatcttaatctcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="75873" stop="72410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75573" g_stop="75524" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75523" i_stop="75064" i_length="460">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75063" g_stop="74773" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="341" r_length="291" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74772" i_stop="73067" i_length="1706">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73066" g_stop="72938" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="470" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72937" i_stop="72843" i_length="95">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72842" g_stop="72710" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="603" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E251306" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75573" e_stop="75524"/>
          <exon e_start="75063" e_stop="74773"/>
          <exon e_start="73066" e_stop="72938"/>
          <exon e_start="72842" e_stop="72710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATATCAATGTTGGTGGGCGGCATGTGACTTCATTTCCATATCGAACTGTAAGCTGCTTGATCTCTTCCAAATAATTTTGATTGTTTTCTCTGTAGACATGCAAGTGTTCTGCTTTTCCCATGACTGAGCAAGTAACTATTGTAGGAGAGTGTTTTTAAGATGTTCTTCTTGGAATTGATTTTAGAGTAAGCACATTTTAGACTGCTGTGCCAGGCAATCACTATTCAACCACTGGAATACATTTTTCTCAAAAAAAGGCACATTGGAAATCAAGCTACTATTCAGATCTTTTGCCCACACAAATATTACCAAACAAAAAAAAAATGGATAACATAAAATGTTATCGTAGTGTTTTATCCCTTTTCTGAACCCCTTCACCAGATTCACGGATTTGTAATTGTTGCAATTAATATGATCACCAGATTTTCCGGAATTAATGTTTCAGTTTCCTCACATTTGTTATTTCCATACTAGTAAGCCATAGTCAGATGTTCTCTATTCTATCAGGGCTTCACACTGGAAGATGCTACAGGGTTGGCAATCAGAGGTGACGTAGATATACATTCGGTTTATGCTACATCTCTTCCAACCTCTCATCCAAGTTTTTCTCCCCAAAGAGTGTTGGATTTCTCAGAGAAGTGGAAATCTCTTCCTTTACCCAAGAATCGCATTCAACTTTTCATTGGGGTGCTTTCTGCCACCAATCACTTTGCTGAGCGTATGGCAATCAGGAAAACATGGATGCAGGCTTCAGCAATCAAATCCTCAGACATAGCAGTCCGCTTCTTTGTTGCTTTGGTAAGTTGCATCCCTCACCCAAATATTCCTTGGAGAGTAAAAATACATGCATGTTAACTTTGTGCATCCAAATATGTTTGCACCCCAGATGCAGTCATATTCCTTGTAATCACAATATTTCAAGCTCCTCCAATGAGCTGCCACTCTGACATGAGGTGATTAAGGAGATTGTCAAATGATAGGTCATGAAACATCTTTTTTTTTTTTAATAAAAAAGATGTTTCTTTGAACTGCTTTATTAATGCATTTATTTTTTCCTTTATCAAAAAGTTAGATATTATCATAGCAAAGATGTATAGTAAATACATACACATACATTGTGTTTGTGTGCGTATACATCATGTGGCTATTGAATTAGATAGTGAAAAGAAAAAAAATAGACCTACAATGCGCTAATCTAATGAGACATGAAGCTTGATGACAAAGCTCAATTCATAAATCATTACTGAAGAGAATAACAATGGATAATAAATGAAAAACATAGCAAAACTGGTTCACTGTTGCCTGGGTTGTGGGAAATGTCTAATGTTGTCAAATAACCTGGGGACAGTTCAATATAAGTTGAGTAAAATAGAGGTGATGGCCATGGGTATGCCATCTGTATCTTATATCGACAGGAGGGTCATTACTTCTAGCCAATAAACTCTCCTCCCATGTTCCAGTTGAAGTTAAAGTTGTGATTTCCATCATTCAAAGGAAATTAGATAAGGGTGTGCCCAGATCCTGAAAGAATTTACACTTCACCAGTTCACCTTATCGAAAGAAAAATACTAGAAAGAATTTGCTGTTTCCTTATGGGAACTTTCTGATTTCATTTTCCTCTCTCTGTCTTCCTCTCTTCCATGCTCCAACTGCTCATTAGACTTCGTTGGAATATAAGGAGTTCCTCATCATCATTGAGACATTTGACTAAAAACACTCTTGATGTTTCATGCAGCTAGAAGCCCCCAAATTTCAAAACTAACAAATATTAAAATGTACGCAGACAGAAACCAAGAGGATGATCAATGTGTTGTGTATCTAGTGCCAATTACTCTGCTTCTAAAAATACAGTTAGGGAACCCTAAAATTTGGCGCCGTGTCAATAAAGAACTTGAATGTATCTTCTCAAAAATTAAAGAGCTTGATTGTATAATGTGGCTATTCTGTAAGAACTATATTCAACTTTTTCCAATAAAAATACTACAAAATCTCATGTTGCGATAGCATATTTTGTCATAAACTCTGGCACAACTACTGTATTCATTAGTAGCTGGATAATAGATGTCAATATAATCACCCCTTTGTATTTGCCTACTTGGAAGATCCTTCAATCTTCATGGCTATCCCTGGAGCACAATGCACGCTTGTTACATTACATAGTTTATCATCTTTTGGGAGGTATTAACTTGCCGTACTATTCACTTGGAAGCATTCTTGCCATTTCTATCCTAGGATTTCTGAGGCGCTTTCATTTGAATATCTCATATATAAATGATGGTCAAACGAAAGTAGTGTTGCTTTCAGGTAAAGGAGAAAATTTATGAACAGGAAAAAGGTTGTGCTATTGTCCTCAGTACTACTTTATGCTGTTCTGCAAACACCGCTCTTTAGTTTTCCTTCACCAACTTATTTGTTTGTCGAACTTGCGCTATTATCTCTGCCAATAGCCAGTTTGGAATTCAACCTCAACAGATGTACTTATGTATTAACATTTAACTGTGTAGAATCCACGAAAGGAGCTAAATGCTATATTGAAGAAGGAAGCAGATTACTTTGGGGACATTGTGATTGTCCCCTTTATCGATAGATACGAGCTAGTGGTTCTTAAAACTATTGCCATCTGCAAGTATGGGGTGAGTTCTGCACTTCGCTCCATCTTCCTCTACTTCTCTAGACTGCTCAGTTGTGTCCTAATTTCTATCGACATGGCCCACAATATCTGTTGCAGGTTCAGAATGTGACAGCTGCATATATCATGAAATGTGACGATGATACTTTCATTAGGATAGATGCAGTCCTTAGAGAAATTCAACGTGTCCCTCCTAGACGATCTCTTTACATGGGCAATCTTAATCTCTTGC</genome_strand>
        <mrna_strand>ACCATATCAATGTTGGTGGGCGGCATGTGACTTCATTTCCATATCGAACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCACACTGGAAGATGCTACAGGGTTGGCAATCAGAGGTGACGTAGATATACATTCGGTTTATGCTACATCTCTTCCAACCTCTCATCCAAGTTTTTCTCCCCAAAGAGTGTTGGATTTCTCAGAGAAGTGGAAATCTCTTCCTTTACCCAAGAATCGCATTCAACTTTTCATTGGGGTGCTTTCTGCCACCAATCACTTTGCTGAGCGTATGGCAATCAGGAAAACATGGATGCAGGCTTCAGCAATCAAATCCTCAGACATAGCAGTCCGCTTCTTTGTTGCTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCACGAAAGGAGCTAAATGCTATATTGAAGAAGGAAGCAGATTACTTTGGGGACATTGTGATTGTCCCCTTTATCGATAGATACGAGCTAGTGGTTCTTAAAACTATTGCCATCTGCAAGTATGGG...............................................................................................GTTCAGAATGTGACAGCTGCATATATCATGAAATGTGACGATGATACTTTCATTAGGATAGATGCAGTCCTTAGAGAAATTCAACGTGTCCCTCCTAGACGATCTCTTTACATGGGCAATCTTAATCTCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367240" ref_strand="+" ref_description="SGN-E367240 [cLPT-5-E18]">
      <seq>ttcatttccatatcgaactggcttcacactggaagatgctacagggttggcaatcagaagtgacgtagatatacattcggtttatgctacatctcttccaacctctcatccaagtttttctccccaaagagtgttggatttctcagagaagtggaaatctcttcctttgcccaagaatcgcattcaacttttcattggggtgctttctgccaccaatcactttgctgagcgtatggcaatcaggaaaacatggatgcaggcttcagcaatcaaatcctcagacatagcagtccgcttctttgttgctttgaatccacgaaaggagttaaatgctatattgaagaaggaagcagattactttggggacattgtgattgtcccctttatcgatagatacgagctagtggttcttaaaactattgccatctgcaagtatggggttcagaatgtgacagctgcatatatcatgaaatgtgacgatgatactttcattaggatagatgcagtccttagagaaattcaacgggtccctcctagacgatctctttacatgggcaatcttaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="75842" stop="72416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75542" g_stop="75524" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75523" i_stop="75064" i_length="460">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75063" g_stop="74773" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="310" r_length="291" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74772" i_stop="73067" i_length="1706">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73066" g_stop="72938" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="439" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72937" i_stop="72843" i_length="95">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72842" g_stop="72716" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="566" r_length="127" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E367240" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75542" e_stop="75524"/>
          <exon e_start="75063" e_stop="74773"/>
          <exon e_start="73066" e_stop="72938"/>
          <exon e_start="72842" e_stop="72716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTTCCATATCGAACTGTAAGCTGCTTGATCTCTTCCAAATAATTTTGATTGTTTTCTCTGTAGACATGCAAGTGTTCTGCTTTTCCCATGACTGAGCAAGTAACTATTGTAGGAGAGTGTTTTTAAGATGTTCTTCTTGGAATTGATTTTAGAGTAAGCACATTTTAGACTGCTGTGCCAGGCAATCACTATTCAACCACTGGAATACATTTTTCTCAAAAAAAGGCACATTGGAAATCAAGCTACTATTCAGATCTTTTGCCCACACAAATATTACCAAACAAAAAAAAAATGGATAACATAAAATGTTATCGTAGTGTTTTATCCCTTTTCTGAACCCCTTCACCAGATTCACGGATTTGTAATTGTTGCAATTAATATGATCACCAGATTTTCCGGAATTAATGTTTCAGTTTCCTCACATTTGTTATTTCCATACTAGTAAGCCATAGTCAGATGTTCTCTATTCTATCAGGGCTTCACACTGGAAGATGCTACAGGGTTGGCAATCAGAGGTGACGTAGATATACATTCGGTTTATGCTACATCTCTTCCAACCTCTCATCCAAGTTTTTCTCCCCAAAGAGTGTTGGATTTCTCAGAGAAGTGGAAATCTCTTCCTTTACCCAAGAATCGCATTCAACTTTTCATTGGGGTGCTTTCTGCCACCAATCACTTTGCTGAGCGTATGGCAATCAGGAAAACATGGATGCAGGCTTCAGCAATCAAATCCTCAGACATAGCAGTCCGCTTCTTTGTTGCTTTGGTAAGTTGCATCCCTCACCCAAATATTCCTTGGAGAGTAAAAATACATGCATGTTAACTTTGTGCATCCAAATATGTTTGCACCCCAGATGCAGTCATATTCCTTGTAATCACAATATTTCAAGCTCCTCCAATGAGCTGCCACTCTGACATGAGGTGATTAAGGAGATTGTCAAATGATAGGTCATGAAACATCTTTTTTTTTTTTAATAAAAAAGATGTTTCTTTGAACTGCTTTATTAATGCATTTATTTTTTCCTTTATCAAAAAGTTAGATATTATCATAGCAAAGATGTATAGTAAATACATACACATACATTGTGTTTGTGTGCGTATACATCATGTGGCTATTGAATTAGATAGTGAAAAGAAAAAAAATAGACCTACAATGCGCTAATCTAATGAGACATGAAGCTTGATGACAAAGCTCAATTCATAAATCATTACTGAAGAGAATAACAATGGATAATAAATGAAAAACATAGCAAAACTGGTTCACTGTTGCCTGGGTTGTGGGAAATGTCTAATGTTGTCAAATAACCTGGGGACAGTTCAATATAAGTTGAGTAAAATAGAGGTGATGGCCATGGGTATGCCATCTGTATCTTATATCGACAGGAGGGTCATTACTTCTAGCCAATAAACTCTCCTCCCATGTTCCAGTTGAAGTTAAAGTTGTGATTTCCATCATTCAAAGGAAATTAGATAAGGGTGTGCCCAGATCCTGAAAGAATTTACACTTCACCAGTTCACCTTATCGAAAGAAAAATACTAGAAAGAATTTGCTGTTTCCTTATGGGAACTTTCTGATTTCATTTTCCTCTCTCTGTCTTCCTCTCTTCCATGCTCCAACTGCTCATTAGACTTCGTTGGAATATAAGGAGTTCCTCATCATCATTGAGACATTTGACTAAAAACACTCTTGATGTTTCATGCAGCTAGAAGCCCCCAAATTTCAAAACTAACAAATATTAAAATGTACGCAGACAGAAACCAAGAGGATGATCAATGTGTTGTGTATCTAGTGCCAATTACTCTGCTTCTAAAAATACAGTTAGGGAACCCTAAAATTTGGCGCCGTGTCAATAAAGAACTTGAATGTATCTTCTCAAAAATTAAAGAGCTTGATTGTATAATGTGGCTATTCTGTAAGAACTATATTCAACTTTTTCCAATAAAAATACTACAAAATCTCATGTTGCGATAGCATATTTTGTCATAAACTCTGGCACAACTACTGTATTCATTAGTAGCTGGATAATAGATGTCAATATAATCACCCCTTTGTATTTGCCTACTTGGAAGATCCTTCAATCTTCATGGCTATCCCTGGAGCACAATGCACGCTTGTTACATTACATAGTTTATCATCTTTTGGGAGGTATTAACTTGCCGTACTATTCACTTGGAAGCATTCTTGCCATTTCTATCCTAGGATTTCTGAGGCGCTTTCATTTGAATATCTCATATATAAATGATGGTCAAACGAAAGTAGTGTTGCTTTCAGGTAAAGGAGAAAATTTATGAACAGGAAAAAGGTTGTGCTATTGTCCTCAGTACTACTTTATGCTGTTCTGCAAACACCGCTCTTTAGTTTTCCTTCACCAACTTATTTGTTTGTCGAACTTGCGCTATTATCTCTGCCAATAGCCAGTTTGGAATTCAACCTCAACAGATGTACTTATGTATTAACATTTAACTGTGTAGAATCCACGAAAGGAGCTAAATGCTATATTGAAGAAGGAAGCAGATTACTTTGGGGACATTGTGATTGTCCCCTTTATCGATAGATACGAGCTAGTGGTTCTTAAAACTATTGCCATCTGCAAGTATGGGGTGAGTTCTGCACTTCGCTCCATCTTCCTCTACTTCTCTAGACTGCTCAGTTGTGTCCTAATTTCTATCGACATGGCCCACAATATCTGTTGCAGGTTCAGAATGTGACAGCTGCATATATCATGAAATGTGACGATGATACTTTCATTAGGATAGATGCAGTCCTTAGAGAAATTCAACGTGTCCCTCCTAGACGATCTCTTTACATGGGCAATCTTAATC</genome_strand>
        <mrna_strand>TTCATTTCCATATCGAACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTCACACTGGAAGATGCTACAGGGTTGGCAATCAGAAGTGACGTAGATATACATTCGGTTTATGCTACATCTCTTCCAACCTCTCATCCAAGTTTTTCTCCCCAAAGAGTGTTGGATTTCTCAGAGAAGTGGAAATCTCTTCCTTTGCCCAAGAATCGCATTCAACTTTTCATTGGGGTGCTTTCTGCCACCAATCACTTTGCTGAGCGTATGGCAATCAGGAAAACATGGATGCAGGCTTCAGCAATCAAATCCTCAGACATAGCAGTCCGCTTCTTTGTTGCTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCACGAAAGGAGTTAAATGCTATATTGAAGAAGGAAGCAGATTACTTTGGGGACATTGTGATTGTCCCCTTTATCGATAGATACGAGCTAGTGGTTCTTAAAACTATTGCCATCTGCAAGTATGGG...............................................................................................GTTCAGAATGTGACAGCTGCATATATCATGAAATGTGACGATGATACTTTCATTAGGATAGATGCAGTCCTTAGAGAAATTCAACGGGTCCCTCCTAGACGATCTCTTTACATGGGCAATCTTAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E251740" ref_strand="+" ref_description="SGN-E251740 [cLEG-15-B9]">
      <seq>ccatatcaatgttggtgggcggcatgtgacttcatttccatatggaactggcttcacactggaagatgctacagggttggcaatcagaggtgacgtagatatacattcggtttatgctacatctcttgcaacctctcatccaagtttttctccccaaagagtgttggatttctcagagaagaggaaatctcttcctttacccaagaatcgcattcaacttttcattggggtgctttctgccaccaatcactttgctgagcgtatggcaatcaggaaaacatggatgcaggcttcagcaatcaaatcctcagacatagcagtccgcttctttgttgctttgaatccacgaaaggagctaaatgctatattgaagaaggaagcagattactttggggacattgtgattgtcccctttatcgatagatacgagctagtggttcttaaaactattgccatctgcaagtatggggttcagaatgtgacagctgcatatatcatgaaatgtgacgatgatactttcattaggatagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="75872" stop="72479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75572" g_stop="75524" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75523" i_stop="75064" i_length="460">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75063" g_stop="74773" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="340" r_length="291" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74772" i_stop="73067" i_length="1706">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73066" g_stop="72938" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="469" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72937" i_stop="72843" i_length="95">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72842" g_stop="72779" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="533" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E251740" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75572" e_stop="75524"/>
          <exon e_start="75063" e_stop="74773"/>
          <exon e_start="73066" e_stop="72938"/>
          <exon e_start="72842" e_stop="72779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATATCAATGTTGGTGGGCGGCATGTGACTTCATTTCCATATCGAACTGTAAGCTGCTTGATCTCTTCCAAATAATTTTGATTGTTTTCTCTGTAGACATGCAAGTGTTCTGCTTTTCCCATGACTGAGCAAGTAACTATTGTAGGAGAGTGTTTTTAAGATGTTCTTCTTGGAATTGATTTTAGAGTAAGCACATTTTAGACTGCTGTGCCAGGCAATCACTATTCAACCACTGGAATACATTTTTCTCAAAAAAAGGCACATTGGAAATCAAGCTACTATTCAGATCTTTTGCCCACACAAATATTACCAAACAAAAAAAAAATGGATAACATAAAATGTTATCGTAGTGTTTTATCCCTTTTCTGAACCCCTTCACCAGATTCACGGATTTGTAATTGTTGCAATTAATATGATCACCAGATTTTCCGGAATTAATGTTTCAGTTTCCTCACATTTGTTATTTCCATACTAGTAAGCCATAGTCAGATGTTCTCTATTCTATCAGGGCTTCACACTGGAAGATGCTACAGGGTTGGCAATCAGAGGTGACGTAGATATACATTCGGTTTATGCTACATCTCTTCCAACCTCTCATCCAAGTTTTTCTCCCCAAAGAGTGTTGGATTTCTCAGAGAAGTGGAAATCTCTTCCTTTACCCAAGAATCGCATTCAACTTTTCATTGGGGTGCTTTCTGCCACCAATCACTTTGCTGAGCGTATGGCAATCAGGAAAACATGGATGCAGGCTTCAGCAATCAAATCCTCAGACATAGCAGTCCGCTTCTTTGTTGCTTTGGTAAGTTGCATCCCTCACCCAAATATTCCTTGGAGAGTAAAAATACATGCATGTTAACTTTGTGCATCCAAATATGTTTGCACCCCAGATGCAGTCATATTCCTTGTAATCACAATATTTCAAGCTCCTCCAATGAGCTGCCACTCTGACATGAGGTGATTAAGGAGATTGTCAAATGATAGGTCATGAAACATCTTTTTTTTTTTTAATAAAAAAGATGTTTCTTTGAACTGCTTTATTAATGCATTTATTTTTTCCTTTATCAAAAAGTTAGATATTATCATAGCAAAGATGTATAGTAAATACATACACATACATTGTGTTTGTGTGCGTATACATCATGTGGCTATTGAATTAGATAGTGAAAAGAAAAAAAATAGACCTACAATGCGCTAATCTAATGAGACATGAAGCTTGATGACAAAGCTCAATTCATAAATCATTACTGAAGAGAATAACAATGGATAATAAATGAAAAACATAGCAAAACTGGTTCACTGTTGCCTGGGTTGTGGGAAATGTCTAATGTTGTCAAATAACCTGGGGACAGTTCAATATAAGTTGAGTAAAATAGAGGTGATGGCCATGGGTATGCCATCTGTATCTTATATCGACAGGAGGGTCATTACTTCTAGCCAATAAACTCTCCTCCCATGTTCCAGTTGAAGTTAAAGTTGTGATTTCCATCATTCAAAGGAAATTAGATAAGGGTGTGCCCAGATCCTGAAAGAATTTACACTTCACCAGTTCACCTTATCGAAAGAAAAATACTAGAAAGAATTTGCTGTTTCCTTATGGGAACTTTCTGATTTCATTTTCCTCTCTCTGTCTTCCTCTCTTCCATGCTCCAACTGCTCATTAGACTTCGTTGGAATATAAGGAGTTCCTCATCATCATTGAGACATTTGACTAAAAACACTCTTGATGTTTCATGCAGCTAGAAGCCCCCAAATTTCAAAACTAACAAATATTAAAATGTACGCAGACAGAAACCAAGAGGATGATCAATGTGTTGTGTATCTAGTGCCAATTACTCTGCTTCTAAAAATACAGTTAGGGAACCCTAAAATTTGGCGCCGTGTCAATAAAGAACTTGAATGTATCTTCTCAAAAATTAAAGAGCTTGATTGTATAATGTGGCTATTCTGTAAGAACTATATTCAACTTTTTCCAATAAAAATACTACAAAATCTCATGTTGCGATAGCATATTTTGTCATAAACTCTGGCACAACTACTGTATTCATTAGTAGCTGGATAATAGATGTCAATATAATCACCCCTTTGTATTTGCCTACTTGGAAGATCCTTCAATCTTCATGGCTATCCCTGGAGCACAATGCACGCTTGTTACATTACATAGTTTATCATCTTTTGGGAGGTATTAACTTGCCGTACTATTCACTTGGAAGCATTCTTGCCATTTCTATCCTAGGATTTCTGAGGCGCTTTCATTTGAATATCTCATATATAAATGATGGTCAAACGAAAGTAGTGTTGCTTTCAGGTAAAGGAGAAAATTTATGAACAGGAAAAAGGTTGTGCTATTGTCCTCAGTACTACTTTATGCTGTTCTGCAAACACCGCTCTTTAGTTTTCCTTCACCAACTTATTTGTTTGTCGAACTTGCGCTATTATCTCTGCCAATAGCCAGTTTGGAATTCAACCTCAACAGATGTACTTATGTATTAACATTTAACTGTGTAGAATCCACGAAAGGAGCTAAATGCTATATTGAAGAAGGAAGCAGATTACTTTGGGGACATTGTGATTGTCCCCTTTATCGATAGATACGAGCTAGTGGTTCTTAAAACTATTGCCATCTGCAAGTATGGGGTGAGTTCTGCACTTCGCTCCATCTTCCTCTACTTCTCTAGACTGCTCAGTTGTGTCCTAATTTCTATCGACATGGCCCACAATATCTGTTGCAGGTTCAGAATGTGACAGCTGCATATATCATGAAATGTGACGATGATACTTTCATTAGGATAGATG</genome_strand>
        <mrna_strand>CCATATCAATGTTGGTGGGCGGCATGTGACTTCATTTCCATATGGAACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTCACACTGGAAGATGCTACAGGGTTGGCAATCAGAGGTGACGTAGATATACATTCGGTTTATGCTACATCTCTTGCAACCTCTCATCCAAGTTTTTCTCCCCAAAGAGTGTTGGATTTCTCAGAGAAGAGGAAATCTCTTCCTTTACCCAAGAATCGCATTCAACTTTTCATTGGGGTGCTTTCTGCCACCAATCACTTTGCTGAGCGTATGGCAATCAGGAAAACATGGATGCAGGCTTCAGCAATCAAATCCTCAGACATAGCAGTCCGCTTCTTTGTTGCTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCACGAAAGGAGCTAAATGCTATATTGAAGAAGGAAGCAGATTACTTTGGGGACATTGTGATTGTCCCCTTTATCGATAGATACGAGCTAGTGGTTCTTAAAACTATTGCCATCTGCAAGTATGGG...............................................................................................GTTCAGAATGTGACAGCTGCATATATCATGAAATGTGACGATGATACTTTCATTAGGATAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E550887" ref_strand="+" ref_description="SGN-E550887 [TUS-54-D18]">
      <seq>ccatgttggtgggcggcatgtgacttcatttccatatcgaactggcttcacactggaagatgctacagggttggcaatcagaggtgacgtagatatacattcggtttatgctacatctcttccaacctctcatccaagtttttctccccaaagagtgttggatttctcagagaagtggaaatctcttcctttacccaagaatcgcattcaacttttcattggggtgctttctgccaccaatcactttgctgagcgtatggcaatcaggaaaacatggatgcaggcttcagcaatcaaatcctcagacatagcagtccgcttctttgttgctttgaatccacgaaaggagctaaatgctatattgaagaaggaagcagattactttggggacattgtgattgtcccctttatcgatagatacgagctagtggttcttnaaactattgccatctgcaagtatggggttcagaatgtgacagctgcatatatcatgaaatgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="75866" stop="72505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75566" g_stop="75524" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75523" i_stop="75064" i_length="460">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75063" g_stop="74773" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="334" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74772" i_stop="73067" i_length="1706">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73066" g_stop="72938" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="463" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72937" i_stop="72843" i_length="95">
            <donor d_prob="0.956" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72842" g_stop="72805" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="501" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E550887" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75566" e_stop="75524"/>
          <exon e_start="75063" e_stop="74773"/>
          <exon e_start="73066" e_stop="72938"/>
          <exon e_start="72842" e_stop="72805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGTTGGTGGGCGGCATGTGACTTCATTTCCATATCGAACTGTAAGCTGCTTGATCTCTTCCAAATAATTTTGATTGTTTTCTCTGTAGACATGCAAGTGTTCTGCTTTTCCCATGACTGAGCAAGTAACTATTGTAGGAGAGTGTTTTTAAGATGTTCTTCTTGGAATTGATTTTAGAGTAAGCACATTTTAGACTGCTGTGCCAGGCAATCACTATTCAACCACTGGAATACATTTTTCTCAAAAAAAGGCACATTGGAAATCAAGCTACTATTCAGATCTTTTGCCCACACAAATATTACCAAACAAAAAAAAAATGGATAACATAAAATGTTATCGTAGTGTTTTATCCCTTTTCTGAACCCCTTCACCAGATTCACGGATTTGTAATTGTTGCAATTAATATGATCACCAGATTTTCCGGAATTAATGTTTCAGTTTCCTCACATTTGTTATTTCCATACTAGTAAGCCATAGTCAGATGTTCTCTATTCTATCAGGGCTTCACACTGGAAGATGCTACAGGGTTGGCAATCAGAGGTGACGTAGATATACATTCGGTTTATGCTACATCTCTTCCAACCTCTCATCCAAGTTTTTCTCCCCAAAGAGTGTTGGATTTCTCAGAGAAGTGGAAATCTCTTCCTTTACCCAAGAATCGCATTCAACTTTTCATTGGGGTGCTTTCTGCCACCAATCACTTTGCTGAGCGTATGGCAATCAGGAAAACATGGATGCAGGCTTCAGCAATCAAATCCTCAGACATAGCAGTCCGCTTCTTTGTTGCTTTGGTAAGTTGCATCCCTCACCCAAATATTCCTTGGAGAGTAAAAATACATGCATGTTAACTTTGTGCATCCAAATATGTTTGCACCCCAGATGCAGTCATATTCCTTGTAATCACAATATTTCAAGCTCCTCCAATGAGCTGCCACTCTGACATGAGGTGATTAAGGAGATTGTCAAATGATAGGTCATGAAACATCTTTTTTTTTTTTAATAAAAAAGATGTTTCTTTGAACTGCTTTATTAATGCATTTATTTTTTCCTTTATCAAAAAGTTAGATATTATCATAGCAAAGATGTATAGTAAATACATACACATACATTGTGTTTGTGTGCGTATACATCATGTGGCTATTGAATTAGATAGTGAAAAGAAAAAAAATAGACCTACAATGCGCTAATCTAATGAGACATGAAGCTTGATGACAAAGCTCAATTCATAAATCATTACTGAAGAGAATAACAATGGATAATAAATGAAAAACATAGCAAAACTGGTTCACTGTTGCCTGGGTTGTGGGAAATGTCTAATGTTGTCAAATAACCTGGGGACAGTTCAATATAAGTTGAGTAAAATAGAGGTGATGGCCATGGGTATGCCATCTGTATCTTATATCGACAGGAGGGTCATTACTTCTAGCCAATAAACTCTCCTCCCATGTTCCAGTTGAAGTTAAAGTTGTGATTTCCATCATTCAAAGGAAATTAGATAAGGGTGTGCCCAGATCCTGAAAGAATTTACACTTCACCAGTTCACCTTATCGAAAGAAAAATACTAGAAAGAATTTGCTGTTTCCTTATGGGAACTTTCTGATTTCATTTTCCTCTCTCTGTCTTCCTCTCTTCCATGCTCCAACTGCTCATTAGACTTCGTTGGAATATAAGGAGTTCCTCATCATCATTGAGACATTTGACTAAAAACACTCTTGATGTTTCATGCAGCTAGAAGCCCCCAAATTTCAAAACTAACAAATATTAAAATGTACGCAGACAGAAACCAAGAGGATGATCAATGTGTTGTGTATCTAGTGCCAATTACTCTGCTTCTAAAAATACAGTTAGGGAACCCTAAAATTTGGCGCCGTGTCAATAAAGAACTTGAATGTATCTTCTCAAAAATTAAAGAGCTTGATTGTATAATGTGGCTATTCTGTAAGAACTATATTCAACTTTTTCCAATAAAAATACTACAAAATCTCATGTTGCGATAGCATATTTTGTCATAAACTCTGGCACAACTACTGTATTCATTAGTAGCTGGATAATAGATGTCAATATAATCACCCCTTTGTATTTGCCTACTTGGAAGATCCTTCAATCTTCATGGCTATCCCTGGAGCACAATGCACGCTTGTTACATTACATAGTTTATCATCTTTTGGGAGGTATTAACTTGCCGTACTATTCACTTGGAAGCATTCTTGCCATTTCTATCCTAGGATTTCTGAGGCGCTTTCATTTGAATATCTCATATATAAATGATGGTCAAACGAAAGTAGTGTTGCTTTCAGGTAAAGGAGAAAATTTATGAACAGGAAAAAGGTTGTGCTATTGTCCTCAGTACTACTTTATGCTGTTCTGCAAACACCGCTCTTTAGTTTTCCTTCACCAACTTATTTGTTTGTCGAACTTGCGCTATTATCTCTGCCAATAGCCAGTTTGGAATTCAACCTCAACAGATGTACTTATGTATTAACATTTAACTGTGTAGAATCCACGAAAGGAGCTAAATGCTATATTGAAGAAGGAAGCAGATTACTTTGGGGACATTGTGATTGTCCCCTTTATCGATAGATACGAGCTAGTGGTTCTTAAAACTATTGCCATCTGCAAGTATGGGGTGAGTTCTGCACTTCGCTCCATCTTCCTCTACTTCTCTAGACTGCTCAGTTGTGTCCTAATTTCTATCGACATGGCCCACAATATCTGTTGCAGGTTCAGAATGTGACAGCTGCATATATCATGAAATGTGA</genome_strand>
        <mrna_strand>CCATGTTGGTGGGCGGCATGTGACTTCATTTCCATATCGAACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTCACACTGGAAGATGCTACAGGGTTGGCAATCAGAGGTGACGTAGATATACATTCGGTTTATGCTACATCTCTTCCAACCTCTCATCCAAGTTTTTCTCCCCAAAGAGTGTTGGATTTCTCAGAGAAGTGGAAATCTCTTCCTTTACCCAAGAATCGCATTCAACTTTTCATTGGGGTGCTTTCTGCCACCAATCACTTTGCTGAGCGTATGGCAATCAGGAAAACATGGATGCAGGCTTCAGCAATCAAATCCTCAGACATAGCAGTCCGCTTCTTTGTTGCTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCACGAAAGGAGCTAAATGCTATATTGAAGAAGGAAGCAGATTACTTTGGGGACATTGTGATTGTCCCCTTTATCGATAGATACGAGCTAGTGGTTCTTNAAACTATTGCCATCTGCAAGTATGGG...............................................................................................GTTCAGAATGTGACAGCTGCATATATCATGAAATGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E688628" ref_strand="+" ref_description="SGN-E688628 [t3_tus_54_D18]">
      <seq>ccatgttggtgggcggcatgtgacttcatttccatatcgaactggcttcacactggaagatgctacagggttggcaatcagaggtgacgtagatatacattcggtttatgctacatctcttccaacctctcatccaagtttttctccccaaagagtgttggatttctcagagaagtggaaatctcttcctttacccaagaatcgcattcaacttttcattggggtgctttctgccaccaatcactttgctgagcgtatggcaatcaggaaaacatggatgcaggcttcagcaatcaaatcctcagacatagcagtccgcttctttgttgctttgaatccacgaaaggagctaaatgctatattgaagaaggaagcagattactttggggacattgtgattgtcccctttatcgatagatacgagctagtggttcttnaaactattgccatctgcaagtatggggttcagaatgtgacagctgcatatatcatgaaatgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="75866" stop="72505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75566" g_stop="75524" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75523" i_stop="75064" i_length="460">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75063" g_stop="74773" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="334" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74772" i_stop="73067" i_length="1706">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="73066" g_stop="72938" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="463" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72937" i_stop="72843" i_length="95">
            <donor d_prob="0.956" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72842" g_stop="72805" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="501" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E688628" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75566" e_stop="75524"/>
          <exon e_start="75063" e_stop="74773"/>
          <exon e_start="73066" e_stop="72938"/>
          <exon e_start="72842" e_stop="72805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGTTGGTGGGCGGCATGTGACTTCATTTCCATATCGAACTGTAAGCTGCTTGATCTCTTCCAAATAATTTTGATTGTTTTCTCTGTAGACATGCAAGTGTTCTGCTTTTCCCATGACTGAGCAAGTAACTATTGTAGGAGAGTGTTTTTAAGATGTTCTTCTTGGAATTGATTTTAGAGTAAGCACATTTTAGACTGCTGTGCCAGGCAATCACTATTCAACCACTGGAATACATTTTTCTCAAAAAAAGGCACATTGGAAATCAAGCTACTATTCAGATCTTTTGCCCACACAAATATTACCAAACAAAAAAAAAATGGATAACATAAAATGTTATCGTAGTGTTTTATCCCTTTTCTGAACCCCTTCACCAGATTCACGGATTTGTAATTGTTGCAATTAATATGATCACCAGATTTTCCGGAATTAATGTTTCAGTTTCCTCACATTTGTTATTTCCATACTAGTAAGCCATAGTCAGATGTTCTCTATTCTATCAGGGCTTCACACTGGAAGATGCTACAGGGTTGGCAATCAGAGGTGACGTAGATATACATTCGGTTTATGCTACATCTCTTCCAACCTCTCATCCAAGTTTTTCTCCCCAAAGAGTGTTGGATTTCTCAGAGAAGTGGAAATCTCTTCCTTTACCCAAGAATCGCATTCAACTTTTCATTGGGGTGCTTTCTGCCACCAATCACTTTGCTGAGCGTATGGCAATCAGGAAAACATGGATGCAGGCTTCAGCAATCAAATCCTCAGACATAGCAGTCCGCTTCTTTGTTGCTTTGGTAAGTTGCATCCCTCACCCAAATATTCCTTGGAGAGTAAAAATACATGCATGTTAACTTTGTGCATCCAAATATGTTTGCACCCCAGATGCAGTCATATTCCTTGTAATCACAATATTTCAAGCTCCTCCAATGAGCTGCCACTCTGACATGAGGTGATTAAGGAGATTGTCAAATGATAGGTCATGAAACATCTTTTTTTTTTTTAATAAAAAAGATGTTTCTTTGAACTGCTTTATTAATGCATTTATTTTTTCCTTTATCAAAAAGTTAGATATTATCATAGCAAAGATGTATAGTAAATACATACACATACATTGTGTTTGTGTGCGTATACATCATGTGGCTATTGAATTAGATAGTGAAAAGAAAAAAAATAGACCTACAATGCGCTAATCTAATGAGACATGAAGCTTGATGACAAAGCTCAATTCATAAATCATTACTGAAGAGAATAACAATGGATAATAAATGAAAAACATAGCAAAACTGGTTCACTGTTGCCTGGGTTGTGGGAAATGTCTAATGTTGTCAAATAACCTGGGGACAGTTCAATATAAGTTGAGTAAAATAGAGGTGATGGCCATGGGTATGCCATCTGTATCTTATATCGACAGGAGGGTCATTACTTCTAGCCAATAAACTCTCCTCCCATGTTCCAGTTGAAGTTAAAGTTGTGATTTCCATCATTCAAAGGAAATTAGATAAGGGTGTGCCCAGATCCTGAAAGAATTTACACTTCACCAGTTCACCTTATCGAAAGAAAAATACTAGAAAGAATTTGCTGTTTCCTTATGGGAACTTTCTGATTTCATTTTCCTCTCTCTGTCTTCCTCTCTTCCATGCTCCAACTGCTCATTAGACTTCGTTGGAATATAAGGAGTTCCTCATCATCATTGAGACATTTGACTAAAAACACTCTTGATGTTTCATGCAGCTAGAAGCCCCCAAATTTCAAAACTAACAAATATTAAAATGTACGCAGACAGAAACCAAGAGGATGATCAATGTGTTGTGTATCTAGTGCCAATTACTCTGCTTCTAAAAATACAGTTAGGGAACCCTAAAATTTGGCGCCGTGTCAATAAAGAACTTGAATGTATCTTCTCAAAAATTAAAGAGCTTGATTGTATAATGTGGCTATTCTGTAAGAACTATATTCAACTTTTTCCAATAAAAATACTACAAAATCTCATGTTGCGATAGCATATTTTGTCATAAACTCTGGCACAACTACTGTATTCATTAGTAGCTGGATAATAGATGTCAATATAATCACCCCTTTGTATTTGCCTACTTGGAAGATCCTTCAATCTTCATGGCTATCCCTGGAGCACAATGCACGCTTGTTACATTACATAGTTTATCATCTTTTGGGAGGTATTAACTTGCCGTACTATTCACTTGGAAGCATTCTTGCCATTTCTATCCTAGGATTTCTGAGGCGCTTTCATTTGAATATCTCATATATAAATGATGGTCAAACGAAAGTAGTGTTGCTTTCAGGTAAAGGAGAAAATTTATGAACAGGAAAAAGGTTGTGCTATTGTCCTCAGTACTACTTTATGCTGTTCTGCAAACACCGCTCTTTAGTTTTCCTTCACCAACTTATTTGTTTGTCGAACTTGCGCTATTATCTCTGCCAATAGCCAGTTTGGAATTCAACCTCAACAGATGTACTTATGTATTAACATTTAACTGTGTAGAATCCACGAAAGGAGCTAAATGCTATATTGAAGAAGGAAGCAGATTACTTTGGGGACATTGTGATTGTCCCCTTTATCGATAGATACGAGCTAGTGGTTCTTAAAACTATTGCCATCTGCAAGTATGGGGTGAGTTCTGCACTTCGCTCCATCTTCCTCTACTTCTCTAGACTGCTCAGTTGTGTCCTAATTTCTATCGACATGGCCCACAATATCTGTTGCAGGTTCAGAATGTGACAGCTGCATATATCATGAAATGTGA</genome_strand>
        <mrna_strand>CCATGTTGGTGGGCGGCATGTGACTTCATTTCCATATCGAACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTCACACTGGAAGATGCTACAGGGTTGGCAATCAGAGGTGACGTAGATATACATTCGGTTTATGCTACATCTCTTCCAACCTCTCATCCAAGTTTTTCTCCCCAAAGAGTGTTGGATTTCTCAGAGAAGTGGAAATCTCTTCCTTTACCCAAGAATCGCATTCAACTTTTCATTGGGGTGCTTTCTGCCACCAATCACTTTGCTGAGCGTATGGCAATCAGGAAAACATGGATGCAGGCTTCAGCAATCAAATCCTCAGACATAGCAGTCCGCTTCTTTGTTGCTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCACGAAAGGAGCTAAATGCTATATTGAAGAAGGAAGCAGATTACTTTGGGGACATTGTGATTGTCCCCTTTATCGATAGATACGAGCTAGTGGTTCTTNAAACTATTGCCATCTGCAAGTATGGG...............................................................................................GTTCAGAATGTGACAGCTGCATATATCATGAAATGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E474214" ref_strand="+" ref_description="SGN-E474214 [cSTB-35-F14]">
      <seq>atcccccgggctgcaagttatgctacatctctttcaacctctcattcaagtttttctccccagagatgtttgatttgtcagagaagtggaaatctcttcctttaccccagaatcgcattcaacttttcattggggtgctttctgccaccaatcactttgctgagcgtatggcaatcatgaaaacatggatgcaggcttcagcaatcaaatcctcagacatagcagtccgcttctttgttgctttgaatccacgaaaggagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="75301" stop="72750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75001" g_stop="74773" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="245" r_length="228" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74772" i_stop="73067" i_length="1706">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73066" g_stop="73050" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="262" r_length="17" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E474214" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>246</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75001" e_stop="74773"/>
          <exon e_start="73066" e_stop="73050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGCTACATCTCTTCCAACCTCTCATCCAAGTTTTTCTCCCCAAAGAGTGTTGGATTTCTCAGAGAAGTGGAAATCTCTTCCTTTACCCAAGAATCGCATTCAACTTTTCATTGGGGTGCTTTCTGCCACCAATCACTTTGCTGAGCGTATGGCAATCAGGAAAACATGGATGCAGGCTTCAGCAATCAAATCCTCAGACATAGCAGTCCGCTTCTTTGTTGCTTTGGTAAGTTGCATCCCTCACCCAAATATTCCTTGGAGAGTAAAAATACATGCATGTTAACTTTGTGCATCCAAATATGTTTGCACCCCAGATGCAGTCATATTCCTTGTAATCACAATATTTCAAGCTCCTCCAATGAGCTGCCACTCTGACATGAGGTGATTAAGGAGATTGTCAAATGATAGGTCATGAAACATCTTTTTTTTTTTTAATAAAAAAGATGTTTCTTTGAACTGCTTTATTAATGCATTTATTTTTTCCTTTATCAAAAAGTTAGATATTATCATAGCAAAGATGTATAGTAAATACATACACATACATTGTGTTTGTGTGCGTATACATCATGTGGCTATTGAATTAGATAGTGAAAAGAAAAAAAATAGACCTACAATGCGCTAATCTAATGAGACATGAAGCTTGATGACAAAGCTCAATTCATAAATCATTACTGAAGAGAATAACAATGGATAATAAATGAAAAACATAGCAAAACTGGTTCACTGTTGCCTGGGTTGTGGGAAATGTCTAATGTTGTCAAATAACCTGGGGACAGTTCAATATAAGTTGAGTAAAATAGAGGTGATGGCCATGGGTATGCCATCTGTATCTTATATCGACAGGAGGGTCATTACTTCTAGCCAATAAACTCTCCTCCCATGTTCCAGTTGAAGTTAAAGTTGTGATTTCCATCATTCAAAGGAAATTAGATAAGGGTGTGCCCAGATCCTGAAAGAATTTACACTTCACCAGTTCACCTTATCGAAAGAAAAATACTAGAAAGAATTTGCTGTTTCCTTATGGGAACTTTCTGATTTCATTTTCCTCTCTCTGTCTTCCTCTCTTCCATGCTCCAACTGCTCATTAGACTTCGTTGGAATATAAGGAGTTCCTCATCATCATTGAGACATTTGACTAAAAACACTCTTGATGTTTCATGCAGCTAGAAGCCCCCAAATTTCAAAACTAACAAATATTAAAATGTACGCAGACAGAAACCAAGAGGATGATCAATGTGTTGTGTATCTAGTGCCAATTACTCTGCTTCTAAAAATACAGTTAGGGAACCCTAAAATTTGGCGCCGTGTCAATAAAGAACTTGAATGTATCTTCTCAAAAATTAAAGAGCTTGATTGTATAATGTGGCTATTCTGTAAGAACTATATTCAACTTTTTCCAATAAAAATACTACAAAATCTCATGTTGCGATAGCATATTTTGTCATAAACTCTGGCACAACTACTGTATTCATTAGTAGCTGGATAATAGATGTCAATATAATCACCCCTTTGTATTTGCCTACTTGGAAGATCCTTCAATCTTCATGGCTATCCCTGGAGCACAATGCACGCTTGTTACATTACATAGTTTATCATCTTTTGGGAGGTATTAACTTGCCGTACTATTCACTTGGAAGCATTCTTGCCATTTCTATCCTAGGATTTCTGAGGCGCTTTCATTTGAATATCTCATATATAAATGATGGTCAAACGAAAGTAGTGTTGCTTTCAGGTAAAGGAGAAAATTTATGAACAGGAAAAAGGTTGTGCTATTGTCCTCAGTACTACTTTATGCTGTTCTGCAAACACCGCTCTTTAGTTTTCCTTCACCAACTTATTTGTTTGTCGAACTTGCGCTATTATCTCTGCCAATAGCCAGTTTGGAATTCAACCTCAACAGATGTACTTATGTATTAACATTTAACTGTGTAGAATCCACGAAAGGAGCT</genome_strand>
        <mrna_strand>TTATGCTACATCTCTTTCAACCTCTCATTCAAGTTTTTCTCCCCAGAGA-TGTTTGATTTGTCAGAGAAGTGGAAATCTCTTCCTTTACCCCAGAATCGCATTCAACTTTTCATTGGGGTGCTTTCTGCCACCAATCACTTTGCTGAGCGTATGGCAATCATGAAAACATGGATGCAGGCTTCAGCAATCAAATCCTCAGACATAGCAGTCCGCTTCTTTGTTGCTTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCACGAAAGGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367253" ref_strand="+" ref_description="SGN-E367253 [cLPT-5-O10]">
      <seq>tgaatcctagaataagaggagattggagtcgtcgaccagtgatcgaacacaatacttgctatagaatgcaatggggaacagctcacaggtgtgatggtttgccttcaaagtatgatgatgacatgcttgttgatggatatttgagatgtgagaagtggatgcggaatgacattgttgatactcgagagtcgaaaatattttcatggtttgatcgattcattggacgtgcaaagaagccagaggtgacctggcctttcccatttgtggagggtaggatgtttgttctaactattcgtgctggtattgatggctaccatatcaatgttggtgggcggcatgtgacttcatttccatatcgaactggcttcacactggaagatgctacagggttggcaatcagaggtgacgtagatatacattcggtttatgctacatctcttccaacctctcatccaagtttttctccccaaagagtgttggatttctcagagaagtggaaatctcttcctttgcccaagaatcgcattcaacttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="79001" stop="74590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78701" g_stop="78573" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78572" i_stop="75757" i_length="2816">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75756" g_stop="75524" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="362" r_length="233" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75523" i_stop="75064" i_length="460">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75063" g_stop="74890" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="536" r_length="174" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E367253" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78701" e_stop="78573"/>
          <exon e_start="75756" e_stop="75524"/>
          <exon e_start="75063" e_stop="74890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATCCTAGAATAAGAGGAGATTGGAGCCGTCGACCAGTGATCGAACACAATACTTGCTATAGAATGCAATGGGGAACAGCTCACAGGTGTGATGGTTTGCCTTCAAAGTATGATGATGACATGCTTGGTAAGACACTTTCTGTTTTTTTCTTGTCTGATTTGGTCTCTCTGTTTTATAAGCTATTCCTTTGTGGGAATTTTGTGGGTTTGGGTAGGGGGTAATGAAACAATAAAGGGAAATGATGTTTTTGATAATGAAGAGAATTCTAGGATATATAGGTGAAGTTCTTTGACAATCAATGTGCTTAAAGTTGGCTTAAAAAATCACACACAACTATCTGGAAAAGTGAAATTGTCGCTTTGTTTTTTACTTTGTAAAATCTCTTGAAAACTGAACAACTTAGAGAAGAAGAAACAAAGAAAATATGGAGCACTAATGAATTCTATCACAAACAATATAGGAAACAATGATCCTTGATAGATCCAATAAATGGCGAAGAAATAGGAAAGGAAATCTATTTTGAAACACCCATTCACCAAGCAATGCAATCAAAGGTATTGAACCCCAAGTGGAAGAGTAAAACCCTATTAGACTTATCAGACCAAGAAAATAAAGTATTGTCAAAACATAGAGAATTATCCACTTCATGGCAGCCATTGGTGTTCGTGTTCCTCAAGAACATAGTGGTACATCCTACCTCACAAGCATAATGCTCTTCAAAATATCATCAGTCTCTATTTCTTTTTTGATCAAGTAAGTTGTATTATAAATGGCATCAAGTGTATGTATGTGACTTATAGCTTACCTCTGTCTCTATTTCGAAGATGCCTATGTGCTACTTATAGCTTAGGTCCCCCAGATATGCAAGCCCATTCAAAATATACATGGAATTATCCTTAAACTAAGAAGGAGTAAGAATTTGATGGACTGGGGCGTGGGCGGTTGCACAAACTAGTTGTGTAGTTACAAACTAGGCTAAAGCTTGATCCAGTGGGTTTCCAGATTGGGACTTAGGTGTGTGTGGCTGGTAATAGCATGTGTAGTTGCACAACCTTAAGAAATTTTCCATCTTGTATTGGCCTTAATGTTTCCCATCACGGCCATGTCATGTGATCACACTTACTCCTGAAATGATTCACCCTTCAATTCTACTAAGTCGGACCTTAACCTTCAGTTAGAATTTCCCATATCTTCCAATGTTCTGTTGGTACAATGTCTGTTGCGACCATATCCTGGCGTTAAAGAAACCACCTCATGCATATACTTAACAAACAAACATGGTGCTTTGGATATTAGCACCCTACTGCTAATTGATGGTGGCTCTTAAGTGTACTGTATTCTGGGAGAAGCTGGGGAAATCAGTGAGAAAATTTTGTAGGTTGTGTGGCATCCTTGGTGGAAGGATGTTGGAGAGAGCAAGTTGAAAGGGTGGTTTAAGGAGGACAAGAGCGATGTGGTGGTTCTCTTGTGGGTCTGTGTTTGTATTGTCCCAAAAATGGTGAATGGAGGATTGAAGAAGTGTGGGGAAAGGGTGAGAATGTGGGACCCACAGAATTTTGAAAAACAAAAAAGAATTAAAACGCAGTACTTTAAAGGTTATTGCACTCAAATTTGGGTGAAACACAAAACTTTTGCCATGTCAACGTCAGGTGTGCACGAGACACAACAATGTCTAGTTGGTCATGTATTTTGCCCTAAAAATAACCTTATCGTTCAAAATCATACCACTCAAATAAGGATCAAAAGTCACTTCGTCGTGAGTTTTCTTGGGTTAAACGTGTCATGTTTTTGAGAAAGGTAACATATTTGTATATTGATGTATAGACTACACAAAATCTGTATAACCATCCATAATTACTGAGAAAATTCACAAAATACAGATAGGAATCTAAAACATCAAAAATCAATTTATGATCTTCTAAGCATACTCCTTTACACCAAAAATAAAAAGGACTAAACACTTCATTTTTATCTTCTGGATGTGACAAACTTTATCTTCATAGTATCTGGTTTCTCCCTTCCCAAATTGTCCACCACATATGCAAGCTGGAAACATCTGTACCTTCCAAAGGCAGCGGTACGATCTGCGTACACACTACCTTCCGCAGACCCCACTTGTGTGATTACACGGGGTATGTTGTTGTTTTTATGCAAGCTGGGACAACCATTCATCTCTCTTTATGTATTGAGTTAATACCTTCTCTGTTCCCGAATGCTAGAACATCCACTATGTTCCTTGGCATACTCCCCATCCCTTAGGTTGATGAATATCCTCGTATTTGTATAATCAATTTACAGTGCAAACTGAGATGACCGATAGAGGTCTCATTATGATCAAGAAGACTACTAAAGGAGTTATATTGAGGCGGTGCTGGGATAAATATAGTAATTAGCTATAACACTTGATCCTCCTTCTAAAACAATGGATTATCCTACACTTTGAAGCTCTTGTCAACAGATGGATAGTGTTGTTTGGAATTAACTCCATTTTCCTCAAGGAATACATCATTGTTACCTTGTAGCAAAGAAGAATTAACTCTAAAACAAGAAAGAGTGAGTTGGTTAGAGTATAAACAAGGACTCTTTTCACAAACATTGTTTTTCATACTTGACTCTCCTTTTCTTTTGATTGTTGTCACTCTCATTTTGAAGGATTTTGTGATAGACTGATAGTCCTCTCTTTACTTATCTCTTCCTCACCTTTCCCATTCTAGTATTATCACTTAGCTCTTGTCAAATTTGTTTTTCATTTATATCTAAACTGATGGTTTTCACTTAATTATGTGTAGTTCCATTGTAGAGTGATAATAAACCTCTTTTACAACTTATTCAAACTTTTTTTTTGATAAGCCTTGTGCCTAAGAAGTTTTACTTGTGGGATTCTTGATTAACAGCTTTATATAAACCAAATACCATAAAATTTTGAATTTACTTTCATGCAGTTGATGGATATTTGAGATGTGAGAAGTGGATGCGGAATGACATTGTTGATACTCGAGAGTCGAAAATATTCTCATGGTTTGATCGATTCATTGGACGTGCAAAGAAGCCAGAGGTGACATGGCCTTTCCCATTTGTGGAGGGTAGGATGTTTGTTCTAACTATTCGTGCTGGTATTGATGGCTACCATATCAATGTTGGTGGGCGGCATGTGACTTCATTTCCATATCGAACTGTAAGCTGCTTGATCTCTTCCAAATAATTTTGATTGTTTTCTCTGTAGACATGCAAGTGTTCTGCTTTTCCCATGACTGAGCAAGTAACTATTGTAGGAGAGTGTTTTTAAGATGTTCTTCTTGGAATTGATTTTAGAGTAAGCACATTTTAGACTGCTGTGCCAGGCAATCACTATTCAACCACTGGAATACATTTTTCTCAAAAAAAGGCACATTGGAAATCAAGCTACTATTCAGATCTTTTGCCCACACAAATATTACCAAACAAAAAAAAAATGGATAACATAAAATGTTATCGTAGTGTTTTATCCCTTTTCTGAACCCCTTCACCAGATTCACGGATTTGTAATTGTTGCAATTAATATGATCACCAGATTTTCCGGAATTAATGTTTCAGTTTCCTCACATTTGTTATTTCCATACTAGTAAGCCATAGTCAGATGTTCTCTATTCTATCAGGGCTTCACACTGGAAGATGCTACAGGGTTGGCAATCAGAGGTGACGTAGATATACATTCGGTTTATGCTACATCTCTTCCAACCTCTCATCCAAGTTTTTCTCCCCAAAGAGTGTTGGATTTCTCAGAGAAGTGGAAATCTCTTCCTTTACCCAAGAATCGCATTCAACTTTTC</genome_strand>
        <mrna_strand>TGAATCCTAGAATAAGAGGAGATTGGAGTCGTCGACCAGTGATCGAACACAATACTTGCTATAGAATGCAATGGGGAACAGCTCACAGGTGTGATGGTTTGCCTTCAAAGTATGATGATGACATGCTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGGATATTTGAGATGTGAGAAGTGGATGCGGAATGACATTGTTGATACTCGAGAGTCGAAAATATTTTCATGGTTTGATCGATTCATTGGACGTGCAAAGAAGCCAGAGGTGACCTGGCCTTTCCCATTTGTGGAGGGTAGGATGTTTGTTCTAACTATTCGTGCTGGTATTGATGGCTACCATATCAATGTTGGTGGGCGGCATGTGACTTCATTTCCATATCGAACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTTCACACTGGAAGATGCTACAGGGTTGGCAATCAGAGGTGACGTAGATATACATTCGGTTTATGCTACATCTCTTCCAACCTCTCATCCAAGTTTTTCTCCCCAAAGAGTGTTGGATTTCTCAGAGAAGTGGAAATCTCTTCCTTTGCCCAAGAATCGCATTCAACTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209189" ref_strand="+" ref_description="SGN-E209189 [cLEC-38-D22]">
      <seq>ttggactctaggctcgaaagcttgggaagaattggataaatatgaggagaaagggattgagatgaattccatacttgagggaaagcctgaatcatgtccttcatgggtttctagtagtggagcacaaattgctaaaacagatcatatgatgttcctaccttgtgggcttgcagcaggttcttctataacacttattggtactcctcgttatgctcatcatgagtatgtaccacagcttgccaaaataagggctgctgatgcattagttttggtttcccaatttatgattgaattacaaggtttaaaatctgtggttggtgaggatccaccaaagattttgcatctgaatcctagaataagaggagattggagccgtcgaccagtgatcgaacacaatacttgctatagaatgcaatggggaacagctcacaggtgtgatggtttgccttcaaagtatgatgatgacatgcttgttgatggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="79345" stop="78265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79045" g_stop="78573" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E209189" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79045" e_stop="78573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGACTCTAGGCTCGAAAGCTTGGGAAGAATTGGATAAATATGAGGAGAAAGGGATTGAGATGAATTCCATACTTGAGGGAAAGCCTGAATCATGTCCTTCATGGGTTTCTAGTAGTGGAGCACAAATTGCTAAAACAGATCATATGATGTTCCTACCTTGTGGGCTTGCAGCAGGTTCTTCTATAACACTTATTGGTACTCCTCGTTATGCTCATCATGAGTATGTACCACAGCTTGCCAAAATAAGGGCTGCTGATGCATTAGTCTTGGTTTCCCAATTTATGATTGAATTACAAGGTTTAAAATCTGTGGTTGGTGAGGATCCACCAAAGATTTTGCATCTGAATCCTAGAATAAGAGGAGATTGGAGCCGTCGACCAGTGATCGAACACAATACTTGCTATAGAATGCAATGGGGAACAGCTCACAGGTGTGATGGTTTGCCTTCAAAGTATGATGATGACATGCTTG</genome_strand>
        <mrna_strand>TTGGACTCTAGGCTCGAAAGCTTGGGAAGAATTGGATAAATATGAGGAGAAAGGGATTGAGATGAATTCCATACTTGAGGGAAAGCCTGAATCATGTCCTTCATGGGTTTCTAGTAGTGGAGCACAAATTGCTAAAACAGATCATATGATGTTCCTACCTTGTGGGCTTGCAGCAGGTTCTTCTATAACACTTATTGGTACTCCTCGTTATGCTCATCATGAGTATGTACCACAGCTTGCCAAAATAAGGGCTGCTGATGCATTAGTTTTGGTTTCCCAATTTATGATTGAATTACAAGGTTTAAAATCTGTGGTTGGTGAGGATCCACCAAAGATTTTGCATCTGAATCCTAGAATAAGAGGAGATTGGAGCCGTCGACCAGTGATCGAACACAATACTTGCTATAGAATGCAATGGGGAACAGCTCACAGGTGTGATGGTTTGCCTTCAAAGTATGATGATGACATGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344595" ref_strand="+" ref_description="SGN-E344595 [cTOF-14-A14]">
      <seq>tcacacaatttatagcaaatatgatcaacgatcattttctaatgagtttaatacaacaaacatcagatttcattgatttagtgaaaacaaaatcaatcgaagtcgtggcacaacacgatgaacgtttattaataacaattttaatgttattatttgtgtgttatatattaatatttttttcaggtcgtttatggaagaagagaaaaaataaaaaattgaaaaaagtattaacaagatcaatgtcaattggacttttacatggaggtgaattggctctaaaaaggttaattgatcatcataaagctaaggctgattttatatcattgaattcagctgagacagatcttgatgctttgctcaatgaggagcaaccccatttcaagaaactacaaaggtgtattgcaaagatggaaatgagtggaaaagaaagccaagcaatgaggaaattagagaatgcaataaaaaatgctgaaccacataaagcttatgagtttgaaatgcaacttgtggaaacacttatttaccagggagaatacaataacgccctacgttgcaaatgtttagacgaaaaattaattaccgatgcaaggcgtccactttataaggctataatatacatctcactcgggagccgtagaaatgaagaagaagccataaattactggaaagaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="87484" stop="84629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87184" g_stop="86793" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86792" i_stop="85977" i_length="816">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85976" g_stop="85842" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="527" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85841" i_stop="85732" i_length="110">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85731" g_stop="85654" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="605" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85653" i_stop="84998" i_length="656">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84997" g_stop="84929" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="674" r_length="69" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E344595" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87184" e_stop="86793"/>
          <exon e_start="85976" e_stop="85842"/>
          <exon e_start="85731" e_stop="85654"/>
          <exon e_start="84997" e_stop="84929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACACAATTTATAGCAAATATGATCAACGATCATTTTCTAATGAGTTTAATACAACAAACATCAGATTTCATTGATTTAGTGAAAACAAAATCAATCGAAGTCGTGGCACAACACGATGAACGTTTATTAATAACAATTTTAATGTTATTATTTGTGTGTTATATATTAATATTTTTTTCAGGTCGTTTATGGAAGAAGAGAAAAAATAAAAAATTGAAAAAAGTATTAACAAGATCAATGTCAATTGGACTTTTACATGGAGGTGAATTGGCTCTAAAAAGGTTAATTGATTATCATAAAGCTAAGGCTGATTTTATATCATTGAATTCAGCTGAGACAGATCTTGATGCTTTGCTCAATGAGGAGCAACCCCATTTCAAGAAACTACAAGTAAGTAATACGTGTTGTTTTTTTTTTTGTTATTTTCGAAAAAAATATATCGTTATATTTATTTTTTTACTATCAGAAAGAGGTTTTGTTTTACTTTTTTTTTTTGATATATTTGCTCTTATTCTCTAACTTTAAACACATATTTACTTTAGATGGTTAACTCTCATTTCTCCGCCCTTATTATTTTATGTTGCACCTATATGACACTTGTATGAATATATTATAAAACATGATAACTTGATGTTATTTGATATAAAATATGTAGTTATATTTGTTTTTATACTATCAAAAAAGGGGTTTCGTTTTACTTTTTTTTATATATATTTGCTCCTATCCTCTAACTTTAGACACATATTTACGTCAAATGGTTAACTCTCATTTCTCCGCCCTTATTATTTTATGTCGCACCTATGTGACACTTGTATGAATATATTTTAAAACATGATAAGTTGATATTATTTGATATAAAATATGTAGTTATATTTGTTTTTATACTATCAAAAAAGGGTTTCGTTTTACTTTTTTTATATATATATATATATATTTGCTCTTATCCTCTAGCTTTAGACACATATTTACTTTAGATGGTTAACTCTCATTTCTCCGCTCTTATTATTTTATATCGCACCTATATGACACTTGTATGAATATATTTTTAAAACATGATAAATTGATATTATTTGATATAAAATATGGGTCATGCATGAATCATGACCCCTATAATTTTTTTTTATTTATCTACGAAAGATCTTCATTTTTTATGCGTAAAAAAAAAAACAGAAAAAACTATTTTCTTGTGTTTTATGTGTTTAATAGAGGTGTATTGCAAAGATGGAAATGAGTGGAAAAGAAAGCCAAGCAGTGAGGAAATTAGAGAATGCAATAAAAAATGCTGAACCACATAAAGCTTATGAGTTTGAAATGCAACTTGTGGAAACACTTATTTACCAGGTTAAATTATTTCATTTATTAATAATTTTCACTTTAAGGTTGATTTAAATTTAATTAAACTCTTCATTTTATTGTATAGTACTAACTTTGGTTGTCATTATTTTTCTTAGGGAGAATACAATAACGCCCTACGTTGCAAATGTTTAGACGAAAAATTAATTACCGATGCAAGGCGTCCACTTTATAAGGTAACTTTATTCTTTATATATCAGTAGGGCCAGTCAATGAGCCAATAAAATTTAATTAAAAAAATATAATGTAATATTAAAATATAAAATTGATGAGAGCCAAATTCAAAACAATTAAGTTATATTTTTATTTAAATATTTATACTTAAAAAATACTTAAATAGTTTTTTTTTTCCAAAAAAATAGTAACTTAACTTAATAAATATTTTATAAAGACAATTTTATTTGTGAATTTGATTAACAAGTAGTAACATCAACTTCATGTAATATTGTTTTGTCGATATTTATGATAATATATTTAAATTATAATTAATAATTTAAAAATTAATAATTAAAAGATATATATAATTTTTTAAAAAGTGGGCTGGCCCGGCAAGTCTGTAGTCCACGTACTTGTGGATTGGACCGATCATTTTCCGGCCTACACCAAAAATGGGCTAGCCCAACCTGACCCGTAAAATGTCAAAGCTTATATCGATTAGCTCGGAGGGAGTGAGCTAGCCCATATTGACAGCTCTACGTAGAATACACTTACAACACACGAGTTACTTATTATACATTAACTTAAGGTTCATTACGAATTTACAGTAAATCATAAACTTCAAATTATGGTCATTAATCCGGCTCATTTTGAGATTGTTCTTTATTCTTTTCAGGCTATAATATACATCTCACTTGGGAGCCGTAGAAATGAAGAAGAAGCCGTAAATTACTGGAAAGAATTC</genome_strand>
        <mrna_strand>TCACACAATTTATAGCAAATATGATCAACGATCATTTTCTAATGAGTTTAATACAACAAACATCAGATTTCATTGATTTAGTGAAAACAAAATCAATCGAAGTCGTGGCACAACACGATGAACGTTTATTAATAACAATTTTAATGTTATTATTTGTGTGTTATATATTAATATTTTTTTCAGGTCGTTTATGGAAGAAGAGAAAAAATAAAAAATTGAAAAAAGTATTAACAAGATCAATGTCAATTGGACTTTTACATGGAGGTGAATTGGCTCTAAAAAGGTTAATTGATCATCATAAAGCTAAGGCTGATTTTATATCATTGAATTCAGCTGAGACAGATCTTGATGCTTTGCTCAATGAGGAGCAACCCCATTTCAAGAAACTACAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGTATTGCAAAGATGGAAATGAGTGGAAAAGAAAGCCAAGCAATGAGGAAATTAGAGAATGCAATAAAAAATGCTGAACCACATAAAGCTTATGAGTTTGAAATGCAACTTGTGGAAACACTTATTTACCAG..............................................................................................................GGAGAATACAATAACGCCCTACGTTGCAAATGTTTAGACGAAAAATTAATTACCGATGCAAGGCGTCCACTTTATAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATAATATACATCTCACTCGGGAGCCGTAGAAATGAAGAAGAAGCCATAAATTACTGGAAAGAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203148" ref_strand="+" ref_description="SGN-E203148 [cLEB-3-D6]">
      <seq>gcacgagatttatagcaaatatgatcaacgatcattttctaatgagtttaatacaacgaacatcagatttcattgatttagtgaaaacaaaatcaatcgaagtcgtggcacaacacgatgaacgtttattaataacaattttaatgttattatttgtgtgttatatattaatatttttttcaggtcgtttatggaagaagagaaaaaataaaaaattgaaaaaagtattaacaagatcaatgtcaattggacttttacatggaggtgaattggctctaaaaaggttaattgattatcataaagctaaggctgattttatatcattggaattcagctgggacagatcttgatgctttgctcaatgaggagcaaccccatttcaagaaactacaaaggtgtattgcaaagatggaaatgagtggaaaagaaagccaagcaatgaggaaattagagaatgcaataaaaaatgctgaaccacataaagcttatgagtttgaaatgcaacttgtggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="-" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="87481" stop="85557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87184" g_stop="86793" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86792" i_stop="85977" i_length="816">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85976" g_stop="85857" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="513" r_length="120" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="-" ref_id="SGN-E203148" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87184" e_stop="86793"/>
          <exon e_start="85976" e_stop="85857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACACAATTTATAGCAAATATGATCAACGATCATTTTCTAATGAGTTTAATACAACAAACATCAGATTTCATTGATTTAGTGAAAACAAAATCAATCGAAGTCGTGGCACAACACGATGAACGTTTATTAATAACAATTTTAATGTTATTATTTGTGTGTTATATATTAATATTTTTTTCAGGTCGTTTATGGAAGAAGAGAAAAAATAAAAAATTGAAAAAAGTATTAACAAGATCAATGTCAATTGGACTTTTACATGGAGGTGAATTGGCTCTAAAAAGGTTAATTGATTATCATAAAGCTAAGGCTGATTTTATATCATT-GAATTCAGCTGAGACAGATCTTGATGCTTTGCTCAATGAGGAGCAACCCCATTTCAAGAAACTACAAGTAAGTAATACGTGTTGTTTTTTTTTTTGTTATTTTCGAAAAAAATATATCGTTATATTTATTTTTTTACTATCAGAAAGAGGTTTTGTTTTACTTTTTTTTTTTGATATATTTGCTCTTATTCTCTAACTTTAAACACATATTTACTTTAGATGGTTAACTCTCATTTCTCCGCCCTTATTATTTTATGTTGCACCTATATGACACTTGTATGAATATATTATAAAACATGATAACTTGATGTTATTTGATATAAAATATGTAGTTATATTTGTTTTTATACTATCAAAAAAGGGGTTTCGTTTTACTTTTTTTTATATATATTTGCTCCTATCCTCTAACTTTAGACACATATTTACGTCAAATGGTTAACTCTCATTTCTCCGCCCTTATTATTTTATGTCGCACCTATGTGACACTTGTATGAATATATTTTAAAACATGATAAGTTGATATTATTTGATATAAAATATGTAGTTATATTTGTTTTTATACTATCAAAAAAGGGTTTCGTTTTACTTTTTTTATATATATATATATATATTTGCTCTTATCCTCTAGCTTTAGACACATATTTACTTTAGATGGTTAACTCTCATTTCTCCGCTCTTATTATTTTATATCGCACCTATATGACACTTGTATGAATATATTTTTAAAACATGATAAATTGATATTATTTGATATAAAATATGGGTCATGCATGAATCATGACCCCTATAATTTTTTTTTATTTATCTACGAAAGATCTTCATTTTTTATGCGTAAAAAAAAAAACAGAAAAAACTATTTTCTTGTGTTTTATGTGTTTAATAGAGGTGTATTGCAAAGATGGAAATGAGTGGAAAAGAAAGCCAAGCAGTGAGGAAATTAGAGAATGCAATAAAAAATGCTGAACCACATAAAGCTTATGAGTTTGAAATGCAACTTGTGGAA</genome_strand>
        <mrna_strand>GCACGAGATTTATAGCAAATATGATCAACGATCATTTTCTAATGAGTTTAATACAACGAACATCAGATTTCATTGATTTAGTGAAAACAAAATCAATCGAAGTCGTGGCACAACACGATGAACGTTTATTAATAACAATTTTAATGTTATTATTTGTGTGTTATATATTAATATTTTTTTCAGGTCGTTTATGGAAGAAGAGAAAAAATAAAAAATTGAAAAAAGTATTAACAAGATCAATGTCAATTGGACTTTTACATGGAGGTGAATTGGCTCTAAAAAGGTTAATTGATTATCATAAAGCTAAGGCTGATTTTATATCATTGGAATTCAGCTGGGACAGATCTTGATGCTTTGCTCAATGAGGAGCAACCCCATTTCAAGAAACTACAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGTATTGCAAAGATGGAAATGAGTGGAAAAGAAAGCCAAGCAATGAGGAAATTAGAGAATGCAATAAAAAATGCTGAACCACATAAAGCTTATGAGTTTGAAATGCAACTTGTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277130" ref_strand="+" ref_description="SGN-E277130 [cLEL-3-C16](-)">
      <seq>aaatggggttgctcctcattgagcaaagcatcaagatctgtctcagctgaattcaatgatataaaatcagccttagctttatgataatcaattaacctttttagagccaattcacctccatgtaaaagtccaattgacattgatcttgttaatacttttttcaattttttattttttctcttcttccataaacgacctgaaaaaaatattaatatataacacacaaataataacattaaaattgttattaataaacgttcatcgtgttgtgccacgacttcgattgattttgttttcgctaaatcaatgaaatctgatgtctgctgtattaaactcattagaaaatgatcgttgatcatatttgctataaatctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0064G08-nI37m/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02SLm0064G08.1" temp_strand="+" temp_description="C02SLm0064G08.1  AC226520.1 htgs_phase:3 submitted_to_sgn_as:gi|189409197|gb|AC226520.1| sequenced_by:kribb upload_account_name:korea Solanum lycopersicum chromosome 2 clone C02SLm0064G08, complete sequence">
        <position start="86506" stop="87481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86806" g_stop="87184" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0064G08.1" gen_strand="+" ref_id="SGN-E277130" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0064G08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86806" e_stop="87184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGGGTTGCTCCTCATTGAGCAAAGCATCAAGATCTGTCTCAGCTGAATTCAATGATATAAAATCAGCCTTAGCTTTATGATAATCAATTAACCTTTTTAGAGCCAATTCACCTCCATGTAAAAGTCCAATTGACATTGATCTTGTTAATACTTTTTTCAATTTTTTATTTTTTCTCTTCTTCCATAAACGACCTGAAAAAAATATTAATATATAACACACAAATAATAACATTAAAATTGTTATTAATAAACGTTCATCGTGTTGTGCCACGACTTCGATTGATTTTGTTTTCACTAAATCAATGAAATCTGATGTTTGTTGTATTAAACTCATTAGAAAATGATCGTTGATCATATTTGCTATAAATTGTGTGA</genome_strand>
        <mrna_strand>AAATGGGGTTGCTCCTCATTGAGCAAAGCATCAAGATCTGTCTCAGCTGAATTCAATGATATAAAATCAGCCTTAGCTTTATGATAATCAATTAACCTTTTTAGAGCCAATTCACCTCCATGTAAAAGTCCAATTGACATTGATCTTGTTAATACTTTTTTCAATTTTTTATTTTTTCTCTTCTTCCATAAACGACCTGAAAAAAATATTAATATATAACACACAAATAATAACATTAAAATTGTTATTAATAAACGTTCATCGTGTTGTGCCACGACTTCGATTGATTTTGTTTTCGCTAAATCAATGAAATCTGATGTCTGCTGTATTAAACTCATTAGAAAATGATCGTTGATCATATTTGCTATAAATCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>454</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="22155" PGL_stop="5983"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7085" e_stop="5983"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="7085" e_stop="5983" e_length="1103"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7085" stop="6643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6940" stop="6477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6831" stop="6276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6442" stop="5983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6419" stop="5983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6417" stop="5983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357069" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCTTTGTCTCTATTATCGATGGAGACTACCATGAACGTGCTGAGGATGCTAAGGACGCTTGCAAGGAACTAAGTACCTATATTGACTACAAGCAATGTGAAGGTGTAGCTGAGATTGTTGTTGCCCCAAGCATGTCTGAAGGCTTTCGAGGCATTGTTCAGACTATGGGTCTCGGAAATCTCAAGCCAAATATAATCGTTATGCGGTACCCTGAGATTTGGCGACGTGAAAATTTGACTGATATTCCTGCTACCTTTGTTGGAATAATTAATGACTGCATTGTTGCGAACAAGGCTGTTGTCATTGTCAAGGGTCTCGACGAATGGCCTAATGAGTACCAAAGACAGTATGGTACCATCGATTTATACTGGATAGTGAGAGATGGTGGTCTCATGCTTCTACTCTCTCAGCTCCTCCTTACAAAAGATAGCTTTGAAGGCTGTAAGATACAGGTGTTCTGCATTGCAGAGGAAGATTCTGATGCAGAGGGATTGAAGGCTGATGTAAAGAAGTTTCTTTATGACCTCCGGATGCAAGCTGAAGTTATTGTCATTTCCATGAAGTCATGGGAAGCCGAAGGGGAGCAGCAAGAATCTGTCGAAGCATTCAGTGCTGCACGACGGAGAGTTGCCAGTTACTTGGAAGAAATGAAAGAGCAAGCACAGAGAGACCGGACTCCGTTGATGGCTGATGGAAAGCCTGTGTTTGTTGAAGAACAACAAGTAGAGAAATTCCTTTACACCACTCTAAAGCTGAACTTAATGGTACAGAAATACTCGAGAATGGCTTCCGTCGTGCTTGTAAGCTTACCTCCTCCACCTCTCAATCATCCTGCAACCTTCTACATGGAATACATGGATCTGCTGGTTGAAAATATACCAAGACTCTTGATTGTTCGTGGATATCATAAAGATGTTGTCACTTTATTCACGTAGTTCTTGTTCATGTACTTGTATAATTTTTTGTTGCTTTAGCTAAGAACTCCCAATTTATTTGCCTTTTAACATTTTCCTTTTTTCTTTTACTGCCCTTCACAACCAAGAGGGGTTTACAATTGTATAATTCTTTATATTAAGGGGCACACTGGACCAAAATTTTGCTA</gDNA_template>
            <first_frame> I  F  V  S  I  I  D  G  D  Y  H  E  R  A  E  D  A  K  D  A  C  K  E  L  S  T  Y  I  D  Y  K  Q  C  E  G  V  A  E  I  V  V  A  P  S  M  S  E  G  F  R  G  I  V  Q  T  M  G  L  G  N  L  K  P  N  I  I  V  M  R  Y  P  E  I  W  R  R  E  N  L  T  D  I  P  A  T  F  V  G  I  I  N  D  C  I  V  A  N  K  A  V  V  I  V  K  G  L  D  E  W  P  N  E  Y  Q  R  Q  Y  G  T  I  D  L  Y  W  I  V  R  D  G  G  L  M  L  L  L  S  Q  L  L  L  T  K  D  S  F  E  G  C  K  I  Q  V  F  C  I  A  E  E  D  S  D  A  E  G  L  K  A  D  V  K  K  F  L  Y  D  L  R  M  Q  A  E  V  I  V  I  S  M  K  S  W  E  A  E  G  E  Q  Q  E  S  V  E  A  F  S  A  A  R  R  R  V  A  S  Y  L  E  E  M  K  E  Q  A  Q  R  D  R  T  P  L  M  A  D  G  K  P  V  F  V  E  E  Q  Q  V  E  K  F  L  Y  T  T  L  K  L  N  L  M  V  Q  K  Y  S  R  M  A  S  V  V  L  V  S  L  P  P  P  P  L  N  H  P  A  T  F  Y  M  E  Y  M  D  L  L  V  E  N  I  P  R  L  L  I  V  R  G  Y  H  K  D  V  V  T  L  F  T  *  F  L  F  M  Y  L  Y  N  F  L  L  L  *  L  R  T  P  N  L  F  A  F  *  H  F  P  F  F  F  Y  C  P  S  Q  P  R  G  V  Y  N  C  I  I  L  Y  I  K  G  H  T  G  P  K  F  C   </first_frame>
            <second_frame>  S  L  S  L  L  S  M  E  T  T  M  N  V  L  R  M  L  R  T  L  A  R  N  *  V  P  I  L  T  T  S  N  V  K  V  *  L  R  L  L  L  P  Q  A  C  L  K  A  F  E  A  L  F  R  L  W  V  S  E  I  S  S  Q  I  *  S  L  C  G  T  L  R  F  G  D  V  K  I  *  L  I  F  L  L  P  L  L  E  *  L  M  T  A  L  L  R  T  R  L  L  S  L  S  R  V  S  T  N  G  L  M  S  T  K  D  S  M  V  P  S  I  Y  T  G  *  *  E  M  V  V  S  C  F  Y  S  L  S  S  S  L  Q  K  I  A  L  K  A  V  R  Y  R  C  S  A  L  Q  R  K  I  L  M  Q  R  D  *  R  L  M  *  R  S  F  F  M  T  S  G  C  K  L  K  L  L  S  F  P  *  S  H  G  K  P  K  G  S  S  K  N  L  S  K  H  S  V  L  H  D  G  E  L  P  V  T  W  K  K  *  K  S  K  H  R  E  T  G  L  R  *  W  L  M  E  S  L  C  L  L  K  N  N  K  *  R  N  S  F  T  P  L  *  S  *  T  *  W  Y  R  N  T  R  E  W  L  P  S  C  L  *  A  Y  L  L  H  L  S  I  I  L  Q  P  S  T  W  N  T  W  I  C  W  L  K  I  Y  Q  D  S  *  L  F  V  D  I  I  K  M  L  S  L  Y  S  R  S  S  C  S  C  T  C  I  I  F  C  C  F  S  *  E  L  P  I  Y  L  P  F  N  I  F  L  F  S  F  T  A  L  H  N  Q  E  G  F  T  I  V  *  F  F  I  L  R  G  T  L  D  Q  N  F  A  </second_frame>
            <third_frame>   L  C  L  Y  Y  R  W  R  L  P  *  T  C  *  G  C  *  G  R  L  Q  G  T  K  Y  L  Y  *  L  Q  A  M  *  R  C  S  *  D  C  C  C  P  K  H  V  *  R  L  S  R  H  C  S  D  Y  G  S  R  K  S  Q  A  K  Y  N  R  Y  A  V  P  *  D  L  A  T  *  K  F  D  *  Y  S  C  Y  L  C  W  N  N  *  *  L  H  C  C  E  Q  G  C  C  H  C  Q  G  S  R  R  M  A  *  *  V  P  K  T  V  W  Y  H  R  F  I  L  D  S  E  R  W  W  S  H  A  S  T  L  S  A  P  P  Y  K  R  *  L  *  R  L  *  D  T  G  V  L  H  C  R  G  R  F  *  C  R  G  I  E  G  *  C  K  E  V  S  L  *  P  P  D  A  S  *  S  Y  C  H  F  H  E  V  M  G  S  R  R  G  A  A  R  I  C  R  S  I  Q  C  C  T  T  E  S  C  Q  L  L  G  R  N  E  R  A  S  T  E  R  P  D  S  V  D  G  *  W  K  A  C  V  C  *  R  T  T  S  R  E  I  P  L  H  H  S  K  A  E  L  N  G  T  E  I  L  E  N  G  F  R  R  A  C  K  L  T  S  S  T  S  Q  S  S  C  N  L  L  H  G  I  H  G  S  A  G  *  K  Y  T  K  T  L  D  C  S  W  I  S  *  R  C  C  H  F  I  H  V  V  L  V  H  V  L  V  *  F  F  V  A  L  A  K  N  S  Q  F  I  C  L  L  T  F  S  F  F  L  L  L  P  F  T  T  K  R  G  L  Q  L  Y  N  S  L  Y  *  G  A  H  W  T  K  I  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7085" stop="6150"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>933</number_coding_nucleotides>
                  <number_encoded_amino_acids>311</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFVSIIDGDYHERAEDAKDACKELSTYIDYKQCEGVAEIVVAPSMSEGFRGIVQTMGLGNLKPNIIVMRYPEIWRRENLTDIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKDSFEGCKIQVFCIAEEDSDAEGLKADVKKFLYDLRMQAEVIVISMKSWEAEGEQQESVEAFSAARRRVASYLEEMKEQAQRDRTPLMADGKPVFVEEQQVEKFLYTTLKLNLMVQKYSRMASVVLVSLPPPPLNHPATFYMEYMDLLVENIPRLLIVRGYHKDVVTLFT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="11815" e_stop="11757"/>
            <exon e_start="11122" e_stop="10722"/>
            <exon e_start="9703" e_stop="9542"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.840" acc_prob="0.970" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11815" e_stop="11757" e_length="59"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.994">
            <gDNA_intron_boundary i_start="11756" i_stop="11123" i_length="634"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11122" e_stop="10722" e_length="401"/>
          </exon>
          <intron i_serial="2" don_prob="0.840" acc_prob="0.970">
            <gDNA_intron_boundary i_start="10721" i_stop="9704" i_length="1018"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9703" e_stop="9542" e_length="162"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11815" stop="11757"/>
              <exon start="11122" stop="10722"/>
              <exon start="9703" stop="9542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11815" stop="11757"/>
              <exon start="11122" stop="10722"/>
              <exon start="9703" stop="9554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11036" stop="10722"/>
              <exon start="9703" stop="9568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279004" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGGTTTCTGTGCTACTATTCGGAGCTGTTGCAACTAGAGATAAGCTTTTGACTGATAG : GTTATTATCTGCTACAGTTGCCTGGCCATTTCCGGCTATTGTTTATGTTGGTATAATCCTCTCAACCTTGGGGGCAGCCCTTCAAAGCCTTACTGGTGCTCCACGTCTCCTTGCAGCGATTGCAAATGATGAAATTCTACCTGTTCTTAACTATTTTAAAGTGGCAGATGGACATGAGCCTCATGTGGCTACTCTCTTCACTGCCATCATCTGCATTGGTTGTGTTGTAATCGGGAATCTAGATCTTGTCTCACCTACTACAACAATGTTTTACCTCGTATGCTATGCTGGCGTGAACTTATCCTGCTTCCTTCTGGATCTGTTAGATGCTCCCAGCTGGCGACCTCGGTGGAAATTTCACCACTGGAGCCTCTCTCTTGTTGGAGCATTACTTTGTATAG : TGACCATGTTTTTGATTTCCTGGGCATTCACCATTGTATCACTTGCCCTAGCAAGCCTCATATATTATTACGTTAGTATAAAGGGGAAAGCAGGAGACTGGGGTGACGGTTTTAAGAGTGCGTATTTTCAGCTTGCTCTTCGCAGTTTGCGATCTTTGGGAG</gDNA_template>
            <first_frame> L  V  S  V  L  L  F  G  A  V  A  T  R  D  K  L  L  T  D  R :   L  L  S  A  T  V  A  W  P  F  P  A  I  V  Y  V  G  I  I  L  S  T  L  G  A  A  L  Q  S  L  T  G  A  P  R  L  L  A  A  I  A  N  D  E  I  L  P  V  L  N  Y  F  K  V  A  D  G  H  E  P  H  V  A  T  L  F  T  A  I  I  C  I  G  C  V  V  I  G  N  L  D  L  V  S  P  T  T  T  M  F  Y  L  V  C  Y  A  G  V  N  L  S  C  F  L  L  D  L  L  D  A  P  S  W  R  P  R  W  K  F  H  H  W  S  L  S  L  V  G  A  L  L  C  I   : V  T  M  F  L  I  S  W  A  F  T  I  V  S  L  A  L  A  S  L  I  Y  Y  Y  V  S  I  K  G  K  A  G  D  W  G  D  G  F  K  S  A  Y  F  Q  L  A  L  R  S  L  R  S  L  G  </first_frame>
            <second_frame>  W  F  L  C  Y  Y  S  E  L  L  Q  L  E  I  S  F  *  L  I   : G  Y  Y  L  L  Q  L  P  G  H  F  R  L  L  F  M  L  V  *  S  S  Q  P  W  G  Q  P  F  K  A  L  L  V  L  H  V  S  L  Q  R  L  Q  M  M  K  F  Y  L  F  L  T  I  L  K  W  Q  M  D  M  S  L  M  W  L  L  S  S  L  P  S  S  A  L  V  V  L  *  S  G  I  *  I  L  S  H  L  L  Q  Q  C  F  T  S  Y  A  M  L  A  *  T  Y  P  A  S  F  W  I  C  *  M  L  P  A  G  D  L  G  G  N  F  T  T  G  A  S  L  L  L  E  H  Y  F  V  *  :  *  P  C  F  *  F  P  G  H  S  P  L  Y  H  L  P  *  Q  A  S  Y  I  I  T  L  V  *  R  G  K  Q  E  T  G  V  T  V  L  R  V  R  I  F  S  L  L  F  A  V  C  D  L  W  E </second_frame>
            <third_frame>   G  F  C  A  T  I  R  S  C  C  N  *  R  *  A  F  D  *  *  :  V  I  I  C  Y  S  C  L  A  I  S  G  Y  C  L  C  W  Y  N  P  L  N  L  G  G  S  P  S  K  P  Y  W  C  S  T  S  P  C  S  D  C  K  *  *  N  S  T  C  S  *  L  F  *  S  G  R  W  T  *  A  S  C  G  Y  S  L  H  C  H  H  L  H  W  L  C  C  N  R  E  S  R  S  C  L  T  Y  Y  N  N  V  L  P  R  M  L  C  W  R  E  L  I  L  L  P  S  G  S  V  R  C  S  Q  L  A  T  S  V  E  I  S  P  L  E  P  L  S  C  W  S  I  T  L  Y  S :   D  H  V  F  D  F  L  G  I  H  H  C  I  T  C  P  S  K  P  H  I  L  L  R  *  Y  K  G  E  S  R  R  L  G  *  R  F  *  E  C  V  F  S  A  C  S  S  Q  F  A  I  F  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11815" stop="11757"/>
                    <exon start="11122" stop="10722"/>
                    <exon start="9703" stop="9543"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVSVLLFGAVATRDKLLTDRLLSATVAWPFPAIVYVGIILSTLGAALQSLTGAPRLLAAIANDEILPVLNYFKVADGHEPHVATLFTAIICIGCVVIGNLDLVSPTTTMFYLVCYAGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLVGALLCIVTMFLISWAFTIVSLALASLIYYYVSIKGKAGDWGDGFKSAYFQLALRSLRSLG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="22155" e_stop="21904"/>
            <exon e_start="19948" e_stop="19802"/>
            <exon e_start="17766" e_stop="17688"/>
            <exon e_start="6332" e_stop="6074"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22155" e_stop="21904" e_length="252"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.979">
            <gDNA_intron_boundary i_start="21903" i_stop="19949" i_length="1955"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19948" e_stop="19802" e_length="147"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="19801" i_stop="17767" i_length="2035"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17766" e_stop="17688" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="17687" i_stop="6333" i_length="11355"/>
          </intron>
          <exon e_serial="4" e_score="0.973">
            <gDNA_exon_boundary e_start="6332" e_stop="6074" e_length="259"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22155" stop="21904"/>
              <exon start="19948" stop="19802"/>
              <exon start="17766" stop="17688"/>
              <exon start="6332" stop="6074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343800" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAATCGCAGCTTAAAAACCCCTTTTCTCGCGGTTAACACTTTCCGGTTTGGGTAGTTCAGACTTGACTGCTTTGAATTCGGGAGGCAATGGAAGGTGGAGAAGAGATTGAGATTGCGGAGGAAAATGAGTTCCCTTCAGTTATTGGACGAAAATACAGTCCAGTGGTGGCGCATGACAATGATAGTGCAGTTATTGAGATGTCTTCTGTTCGTCCCGGATCTTCCTCTTCTCTCCCCAACCACGATCTCAA : GAACGTCAAAGTAGGTGTCCATCCAAATATGGCATCTGAAGAAAGAGACGAGTCATTATCCAATCATAGTAGCAATGGTCCTCAAAGAGAATCCAAACTGGAATTATTTGGCTTTGATTCTCTAGTAAATATTCTAGGTCTCAAGAG : TATGACAGGGGATCAAATTCCCGCACCGTCTAGTCCAAGAGATGGTGAGGATATAACTCTCACGCTTGAGCAACCTAAG : CTGAACTTAATGGTACAGAAATACTCGAGAATGGCTTCCGTCGTGCTTGTAAGCTTACCTCCTCCACCTCTCAATCATCCTGCAACCTTCTACATGGAATACATGGATCTGCTGGTTGAAAATATACCAAGACTCTTGATTGTTCGTGGATATCATAAAGATGTTGTCACTTTATTCACGTAGTTCTTGTTCATGTACTTGTATAATTTTTTGTTGCTTTAGCTAAGAACTCCCAATTTATTTGCCTTTTAACATTTTC</gDNA_template>
            <first_frame> *  I  A  A  *  K  P  L  F  S  R  L  T  L  S  G  L  G  S  S  D  L  T  A  L  N  S  G  G  N  G  R  W  R  R  D  *  D  C  G  G  K  *  V  P  F  S  Y  W  T  K  I  Q  S  S  G  G  A  *  Q  *  *  C  S  Y  *  D  V  F  C  S  S  R  I  F  L  F  S  P  Q  P  R  S  Q  :  E  R  Q  S  R  C  P  S  K  Y  G  I  *  R  K  R  R  V  I  I  Q  S  *  *  Q  W  S  S  K  R  I  Q  T  G  I  I  W  L  *  F  S  S  K  Y  S  R  S  Q  E  :  Y  D  R  G  S  N  S  R  T  V  *  S  K  R  W  *  G  Y  N  S  H  A  *  A  T  *   : A  E  L  N  G  T  E  I  L  E  N  G  F  R  R  A  C  K  L  T  S  S  T  S  Q  S  S  C  N  L  L  H  G  I  H  G  S  A  G  *  K  Y  T  K  T  L  D  C  S  W  I  S  *  R  C  C  H  F  I  H  V  V  L  V  H  V  L  V  *  F  F  V  A  L  A  K  N  S  Q  F  I  C  L  L  T  F   </first_frame>
            <second_frame>  E  S  Q  L  K  N  P  F  S  R  G  *  H  F  P  V  W  V  V  Q  T  *  L  L  *  I  R  E  A  M  E  G  G  E  E  I  E  I  A  E  E  N  E  F  P  S  V  I  G  R  K  Y  S  P  V  V  A  H  D  N  D  S  A  V  I  E  M  S  S  V  R  P  G  S  S  S  S  L  P  N  H  D  L  K :   N  V  K  V  G  V  H  P  N  M  A  S  E  E  R  D  E  S  L  S  N  H  S  S  N  G  P  Q  R  E  S  K  L  E  L  F  G  F  D  S  L  V  N  I  L  G  L  K  S :   M  T  G  D  Q  I  P  A  P  S  S  P  R  D  G  E  D  I  T  L  T  L  E  Q  P  K  :  L  N  L  M  V  Q  K  Y  S  R  M  A  S  V  V  L  V  S  L  P  P  P  P  L  N  H  P  A  T  F  Y  M  E  Y  M  D  L  L  V  E  N  I  P  R  L  L  I  V  R  G  Y  H  K  D  V  V  T  L  F  T  *  F  L  F  M  Y  L  Y  N  F  L  L  L  *  L  R  T  P  N  L  F  A  F  *  H  F  </second_frame>
            <third_frame>   N  R  S  L  K  T  P  F  L  A  V  N  T  F  R  F  G  *  F  R  L  D  C  F  E  F  G  R  Q  W  K  V  E  K  R  L  R  L  R  R  K  M  S  S  L  Q  L  L  D  E  N  T  V  Q  W  W  R  M  T  M  I  V  Q  L  L  R  C  L  L  F  V  P  D  L  P  L  L  S  P  T  T  I  S   : R  T  S  K  *  V  S  I  Q  I  W  H  L  K  K  E  T  S  H  Y  P  I  I  V  A  M  V  L  K  E  N  P  N  W  N  Y  L  A  L  I  L  *  *  I  F  *  V  S  R   : V  *  Q  G  I  K  F  P  H  R  L  V  Q  E  M  V  R  I  *  L  S  R  L  S  N  L  S :   *  T  *  W  Y  R  N  T  R  E  W  L  P  S  C  L  *  A  Y  L  L  H  L  S  I  I  L  Q  P  S  T  W  N  T  W  I  C  W  L  K  I  Y  Q  D  S  *  L  F  V  D  I  I  K  M  L  S  L  Y  S  R  S  S  C  S  C  T  C  I  I  F  C  C  F  S  *  E  L  P  I  Y  L  P  F  N  I  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22079" stop="21904"/>
                    <exon start="19948" stop="19802"/>
                    <exon start="17766" stop="17688"/>
                    <exon start="6332" stop="6150"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IREAMEGGEEIEIAEENEFPSVIGRKYSPVVAHDNDSAVIEMSSVRPGSSSSLPNHDLKNVKVGVHPNMASEERDESLSNHSSNGPQRESKLELFGFDSLVNILGLKSMTGDQIPAPSSPRDGEDITLTLEQPKLNLMVQKYSRMASVVLVSLPPPPLNHPATFYMEYMDLLVENIPRLLIVRGYHKDVVTLFT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="26023" PGL_stop="30871"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26023" e_stop="26259"/>
            <exon e_start="29055" e_stop="29191"/>
            <exon e_start="30054" e_stop="30243"/>
            <exon e_start="30841" e_stop="30871"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="0.916"/>
          <exon-intron don_prob="0.960" acc_prob="0.960" e_score="0.978"/>
          <exon-intron don_prob="0.323" acc_prob="0.840" e_score="0.984"/>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="26023" e_stop="26259" e_length="237"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="26260" i_stop="29054" i_length="2795"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="29055" e_stop="29191" e_length="137"/>
          </exon>
          <intron i_serial="2" don_prob="0.960" acc_prob="0.960">
            <gDNA_intron_boundary i_start="29192" i_stop="30053" i_length="862"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="30054" e_stop="30243" e_length="190"/>
          </exon>
          <intron i_serial="3" don_prob="0.323" acc_prob="0.840">
            <gDNA_intron_boundary i_start="30244" i_stop="30840" i_length="597"/>
          </intron>
          <exon e_serial="4" e_score="0.935">
            <gDNA_exon_boundary e_start="30841" e_stop="30871" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26023" stop="26259"/>
              <exon start="29055" stop="29191"/>
              <exon start="30054" stop="30243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26029" stop="26259"/>
              <exon start="29055" stop="29191"/>
              <exon start="30054" stop="30243"/>
              <exon start="30841" stop="30871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437854" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTCGTCGTCGAGCACTCTATTCCTCCGACTTAACTCCGGTGACCGTGCTTTTTTCACAAAATCAAACTTAAAGGAGAGAGATTACAGAAATTCTTGCAGAAAATGAATCTCAATAGTAGCCGGGATGACTACAAGTTCCTTCAAATAGTAGATGCCAGGGCTGCACTTGGCCAGAAAGTTAATCTCATCGGCGTCGTTGTCGAAACCGGTCTTCCCAAGAAATCCAGGGGCACGG : ATGTCTTTTGCTCCATTAGGATCATTGATGAGTCCTACCCAAGCCCAGGGATTGCAGTTAATTTTTTTGCCGAAACTATGGATAAGCTTCCTGAAGTGCTGACTGTTGGTGATATACTTCAGATCTCTCAAGTTGTG : ATGAAAACTCATGGACCCGATATTTATGCTTTGTTCAACAAGAAGTTCTCTTCATTTGCAATATTTGACGGAAAGAATGATTCAAATATCCTCCCTTATCAATGTTCTTCTAAGTACCATGCTAGAGAGCAAGACAAGAAATTTATACTGGGTTTGATGAAGTGGTTGGTTGATCACAAGATCGATACAG : ATTTGACTGATTTACATTCATTGAAAGAGAT</gDNA_template>
            <first_frame> I  S  S  S  S  T  L  F  L  R  L  N  S  G  D  R  A  F  F  T  K  S  N  L  K  E  R  D  Y  R  N  S  C  R  K  *  I  S  I  V  A  G  M  T  T  S  S  F  K  *  *  M  P  G  L  H  L  A  R  K  L  I  S  S  A  S  L  S  K  P  V  F  P  R  N  P  G  A  R  :  M  S  F  A  P  L  G  S  L  M  S  P  T  Q  A  Q  G  L  Q  L  I  F  L  P  K  L  W  I  S  F  L  K  C  *  L  L  V  I  Y  F  R  S  L  K  L  * :   *  K  L  M  D  P  I  F  M  L  C  S  T  R  S  S  L  H  L  Q  Y  L  T  E  R  M  I  Q  I  S  S  L  I  N  V  L  L  S  T  M  L  E  S  K  T  R  N  L  Y  W  V  *  *  S  G  W  L  I  T  R  S  I  Q  :  I  *  L  I  Y  I  H  *  K  R  </first_frame>
            <second_frame>  F  R  R  R  A  L  Y  S  S  D  L  T  P  V  T  V  L  F  S  Q  N  Q  T  *  R  R  E  I  T  E  I  L  A  E  N  E  S  Q  *  *  P  G  *  L  Q  V  P  S  N  S  R  C  Q  G  C  T  W  P  E  S  *  S  H  R  R  R  C  R  N  R  S  S  Q  E  I  Q  G  H  G :   C  L  L  L  H  *  D  H  *  *  V  L  P  K  P  R  D  C  S  *  F  F  C  R  N  Y  G  *  A  S  *  S  A  D  C  W  *  Y  T  S  D  L  S  S  C   : D  E  N  S  W  T  R  Y  L  C  F  V  Q  Q  E  V  L  F  I  C  N  I  *  R  K  E  *  F  K  Y  P  P  L  S  M  F  F  *  V  P  C  *  R  A  R  Q  E  I  Y  T  G  F  D  E  V  V  G  *  S  Q  D  R  Y  R :   F  D  *  F  T  F  I  E  R  D </second_frame>
            <third_frame>   F  V  V  E  H  S  I  P  P  T  *  L  R  *  P  C  F  F  H  K  I  K  L  K  G  E  R  L  Q  K  F  L  Q  K  M  N  L  N  S  S  R  D  D  Y  K  F  L  Q  I  V  D  A  R  A  A  L  G  Q  K  V  N  L  I  G  V  V  V  E  T  G  L  P  K  K  S  R  G  T   : D  V  F  C  S  I  R  I  I  D  E  S  Y  P  S  P  G  I  A  V  N  F  F  A  E  T  M  D  K  L  P  E  V  L  T  V  G  D  I  L  Q  I  S  Q  V  V  :  M  K  T  H  G  P  D  I  Y  A  L  F  N  K  K  F  S  S  F  A  I  F  D  G  K  N  D  S  N  I  L  P  Y  Q  C  S  S  K  Y  H  A  R  E  Q  D  K  K  F  I  L  G  L  M  K  W  L  V  D  H  K  I  D  T   : D  L  T  D  L  H  S  L  K  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26067" stop="26259"/>
                    <exon start="29055" stop="29191"/>
                    <exon start="30054" stop="30243"/>
                    <exon start="30841" stop="30869"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PCFFHKIKLKGERLQKFLQKMNLNSSRDDYKFLQIVDARAALGQKVNLIGVVVETGLPKKSRGTDVFCSIRIIDESYPSPGIAVNFFAETMDKLPEVLTVGDILQISQVVMKTHGPDIYALFNKKFSSFAIFDGKNDSNILPYQCSSKYHAREQDKKFILGLMKWLVDHKIDTDLTDLHSLKE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="33122" PGL_stop="35526"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33122" e_stop="33170"/>
            <exon e_start="34172" e_stop="34324"/>
            <exon e_start="34797" e_stop="35103"/>
            <exon e_start="35434" e_stop="35526"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.953" acc_prob="0.998" e_score="0.980"/>
          <exon-intron don_prob="0.973" acc_prob="0.794" e_score="0.987"/>
          <exon-intron don_prob="0.376" acc_prob="0.000" e_score="0.928"/>
          <exon-only e_score="0.849"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="33122" e_stop="33170" e_length="49"/>
          </exon>
          <intron i_serial="1" don_prob="0.953" acc_prob="0.998">
            <gDNA_intron_boundary i_start="33171" i_stop="34171" i_length="1001"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="34172" e_stop="34324" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.973" acc_prob="0.794">
            <gDNA_intron_boundary i_start="34325" i_stop="34796" i_length="472"/>
          </intron>
          <exon e_serial="3" e_score="0.928">
            <gDNA_exon_boundary e_start="34797" e_stop="35103" e_length="307"/>
          </exon>
          <intron i_serial="3" don_prob="0.376" acc_prob="0.000">
            <gDNA_intron_boundary i_start="35104" i_stop="35433" i_length="330"/>
          </intron>
          <exon e_serial="4" e_score="0.849">
            <gDNA_exon_boundary e_start="35434" e_stop="35526" e_length="93"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33122" stop="33170"/>
              <exon start="34172" stop="34324"/>
              <exon start="34797" stop="35103"/>
              <exon start="35434" stop="35472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34290" stop="34324"/>
              <exon start="34797" stop="35103"/>
              <exon start="35434" stop="35526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430890" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34290" stop="34324"/>
              <exon start="34797" stop="35103"/>
              <exon start="35434" stop="35526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462753" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCTAATGTACCTTTTGTCTCCTTGATGAGAGCTCTGGCTAATCCAAAG : GTCATAGGTAAATTCCACTGTGTAGTTCGAGTGGTAGCGGCATTTCCTTGGCTAGCTGAACATTTCCGTTCCCCTTCTGGGGTTTATAGGATCAGGTTGACCCTAGAGGATCCAACTACAAGAATCCATGCATATCTGTATAAAGAGGATGCG : GAAAAGTTTTTTGACGGCTACCCCTCTGTTTATACATTAACAAAAAAGAGGAATTTGTTGCTTGGAACTTCTGAAGGCGATGATGATAGTGAAATGAATGATCATTTTAGAAATCCACCCTGGATAAGGTGTTGCTTAATGTCTTACCATATCGATGACAATGATGTCTGGGGAAGTAGGAACTTTCGAATTTTTGCTACCACCCTGAAAGCATAGGAGATCGTCCATTCTGTAAGCCTACAGTGCTTCCAATTAATGTTATGCAGTTTGGCCTCTTCTTCAAATGTACCTAGACAGTTGCTAGCAA : GTAGCTTAGAATGACCATAACCTATTTTCTTTTGCTTGTGTAGATGTTATCATCCTTGCACACAAATAGGTTTGCTTTCATGTAGTGAAAGAA</gDNA_template>
            <first_frame> P  *  C  T  F  C  L  L  D  E  S  S  G  *  S  K   : G  H  R  *  I  P  L  C  S  S  S  G  S  G  I  S  L  A  S  *  T  F  P  F  P  F  W  G  L  *  D  Q  V  D  P  R  G  S  N  Y  K  N  P  C  I  S  V  *  R  G  C   : G  K  V  F  *  R  L  P  L  C  L  Y  I  N  K  K  E  E  F  V  A  W  N  F  *  R  R  *  *  *  *  N  E  *  S  F  *  K  S  T  L  D  K  V  L  L  N  V  L  P  Y  R  *  Q  *  C  L  G  K  *  E  L  S  N  F  C  Y  H  P  E  S  I  G  D  R  P  F  C  K  P  T  V  L  P  I  N  V  M  Q  F  G  L  F  F  K  C  T  *  T  V  A  S  K :   *  L  R  M  T  I  T  Y  F  L  L  L  V  *  M  L  S  S  L  H  T  N  R  F  A  F  M  *  *  K   </first_frame>
            <second_frame>  P  N  V  P  F  V  S  L  M  R  A  L  A  N  P  K  :  V  I  G  K  F  H  C  V  V  R  V  V  A  A  F  P  W  L  A  E  H  F  R  S  P  S  G  V  Y  R  I  R  L  T  L  E  D  P  T  T  R  I  H  A  Y  L  Y  K  E  D  A  :  E  K  F  F  D  G  Y  P  S  V  Y  T  L  T  K  K  R  N  L  L  L  G  T  S  E  G  D  D  D  S  E  M  N  D  H  F  R  N  P  P  W  I  R  C  C  L  M  S  Y  H  I  D  D  N  D  V  W  G  S  R  N  F  R  I  F  A  T  T  L  K  A  *  E  I  V  H  S  V  S  L  Q  C  F  Q  L  M  L  C  S  L  A  S  S  S  N  V  P  R  Q  L  L  A   : S  S  L  E  *  P  *  P  I  F  F  C  L  C  R  C  Y  H  P  C  T  Q  I  G  L  L  S  C  S  E  R  </second_frame>
            <third_frame>   L  M  Y  L  L  S  P  *  *  E  L  W  L  I  Q  R :   S  *  V  N  S  T  V  *  F  E  W  *  R  H  F  L  G  *  L  N  I  S  V  P  L  L  G  F  I  G  S  G  *  P  *  R  I  Q  L  Q  E  S  M  H  I  C  I  K  R  M  R :   K  S  F  L  T  A  T  P  L  F  I  H  *  Q  K  R  G  I  C  C  L  E  L  L  K  A  M  M  I  V  K  *  M  I  I  L  E  I  H  P  G  *  G  V  A  *  C  L  T  I  S  M  T  M  M  S  G  E  V  G  T  F  E  F  L  L  P  P  *  K  H  R  R  S  S  I  L  *  A  Y  S  A  S  N  *  C  Y  A  V  W  P  L  L  Q  M  Y  L  D  S  C  *  Q  :  V  A  *  N  D  H  N  L  F  S  F  A  C  V  D  V  I  I  L  A  H  K  *  V  C  F  H  V  V  K  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33123" stop="33170"/>
                    <exon start="34172" stop="34324"/>
                    <exon start="34797" stop="35012"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PNVPFVSLMRALANPKVIGKFHCVVRVVAAFPWLAEHFRSPSGVYRIRLTLEDPTTRIHAYLYKEDAEKFFDGYPSVYTLTKKRNLLLGTSEGDDDSEMNDHFRNPPWIRCCLMSYHIDDNDVWGSRNFRIFATTLKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="37951" PGL_stop="36205"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37951" e_stop="37907"/>
            <exon e_start="37826" e_stop="37710"/>
            <exon e_start="36893" e_stop="36712"/>
            <exon e_start="36607" e_stop="36205"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.572" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37951" e_stop="37907" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="37906" i_stop="37827" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37826" e_stop="37710" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.572">
            <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36893" e_stop="36712" e_length="182"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="36607" e_stop="36205" e_length="403"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37951" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37936" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37936" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37936" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37936" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37935" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37934" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37933" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37932" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37932" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37932" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37932" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37931" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37931" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37931" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36344"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297892" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37931" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37931" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37930" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37930" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37930" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37929" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37929" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615077" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37929" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37929" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281287" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37928" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37928" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37928" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37928" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37927" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37927" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37927" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37927" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309161" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37927" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37927" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37927" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37927" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37927" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37927" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37925" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37925" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37925" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37924" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37923" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620794" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37923" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37922" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37922" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37921" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36297"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37921" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37920" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37920" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37914" stop="37907"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281332" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37822" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37820" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37814" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37813" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37809" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37809" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37805" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37787" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37777" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37770" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37763" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37751" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37749" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36886" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36881" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36881" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36880" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36871" stop="36712"/>
              <exon start="36607" stop="36320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36861" stop="36712"/>
              <exon start="36607" stop="36277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36850" stop="36712"/>
              <exon start="36607" stop="36342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36837" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36835" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36826" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36801" stop="36712"/>
              <exon start="36607" stop="36340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597319" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36793" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36785" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36771" stop="36712"/>
              <exon start="36607" stop="36342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36763" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36719" stop="36712"/>
              <exon start="36607" stop="36331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36607" stop="36342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36602" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36538" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222679" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTCTCTAGCAAGGAGTTAGCGGCTCAGCAGAAACCCTAGTTCGA : AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG : GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG : AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGTGATAAAGTAGCTGTGGTCATGTTAATTCTGTCAAATCTGCGTAATTTACTCTGGATGATGAGGTTGAATGTTGACGCAGCTCTTTGTTGCACAATCAAAAGAAGAAAGTATATTTC</gDNA_template>
            <first_frame> P  L  *  Q  G  V  S  G  S  A  E  T  L  V  R  :  K  V  R  Q  G  R  T  T  T  M  A  V  P  L  L  N  K  K  V  V  K  K  R  V  K  R  F  I  R  P  Q  S  D  R  R  I  T  V  K  :  E  S  W  R  R  P  K  G  I  D  S  R  V  R  R  K  F  K  G  C  V  L  M  P  N  I  G  Y  G  S  D  K  K  T  R  H  Y  L  P  N  G  F  K  K  F  V  V  H  N  A  S  E  L  E  I  L  M  M  H  N  R :   T  Y  C  A  E  I  A  H  N  V  S  T  R  K  R  K  E  I  V  E  R  A  A  Q  L  D  V  V  I  T  N  K  L  A  R  L  H  S  Q  E  D  E  *  A  F  W  L  *  M  R  S  L  Y  C  F  S  V  *  T  C  S  L  C  F  V  *  L  I  L  C  F  P  E  V  D  F  D  T  S  Y  C  Y  Q  M  L  K  F  S  D  F  S  T  P  L  W  *  *  S  S  C  G  H  V  N  S  V  K  S  A  *  F  T  L  D  D  E  V  E  C  *  R  S  S  L  L  H  N  Q  K  K  K  V  Y  F </first_frame>
            <second_frame>  L  S  S  K  E  L  A  A  Q  Q  K  P  *  F  E :   R  *  D  K  V  E  Q  Q  Q  W  P  C  L  C  L  T  R  R  S  *  R  R  E  *  R  G  S  L  D  L  R  V  T  E  E  S  L  S  R :   K  A  G  A  D  P  R  V  L  I  L  E  *  G  E  S  S  R  D  V  S  *  C  P  I  L  D  T  G  Q  T  R  R  L  A  T  I  F  P  M  A  S  R  S  S  S  C  I  M  L  A  S  L  R  S  *  *  C  T  T   : E  L  T  V  Q  K  S  H  T  M  F  P  L  G  R  G  K  R  L  S  S  E  L  P  N  L  M  L  S  *  Q  T  S  L  L  G  C  T  A  R  R  M  N  E  H  F  G  F  R  *  D  L  Y  I  V  L  V  F  E  P  V  P  C  V  L  F  N  *  Y  S  V  F  P  K  W  I  L  T  H  P  I  A  I  K  C  L  N  F  Q  I  L  V  H  L  C  G  D  K  V  A  V  V  M  L  I  L  S  N  L  R  N  L  L  W  M  M  R  L  N  V  D  A  A  L  C  C  T  I  K  R  R  K  Y  I   </second_frame>
            <third_frame>   S  L  A  R  S  *  R  L  S  R  N  P  S  S   : K  G  K  T  R  *  N  N  N  N  G  R  A  S  A  *  Q  E  G  R  E  E  E  S  E  E  V  H  *  T  S  E  *  P  K  N  H  C  Q   : G  K  L  A  Q  T  Q  G  Y  *  F  *  S  E  E  K  V  Q  G  M  C  L  D  A  Q  Y  W  I  R  V  R  Q  E  D  S  P  L  S  S  Q  W  L  Q  E  V  R  R  A  *  C  *  R  A  *  D  P  N  D  A  Q  Q  :  N  L  L  C  R  N  R  T  Q  C  F  H  *  E  E  E  R  D  C  R  A  S  C  P  T  *  C  C  H  N  K  Q  A  C  *  V  A  Q  P  G  G  *  M  S  I  L  A  L  D  E  I  S  I  L  F  *  C  L  N  L  F  L  V  F  C  L  I  N  T  L  F  S  R  S  G  F  *  H  I  L  L  L  S  N  A  *  I  F  R  F  *  Y  T  F  V  V  I  K  *  L  W  S  C  *  F  C  Q  I  C  V  I  Y  S  G  *  *  G  *  M  L  T  Q  L  F  V  A  Q  S  K  E  E  S  I  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37942" stop="37907"/>
                    <exon start="37826" stop="37710"/>
                    <exon start="36893" stop="36712"/>
                    <exon start="36607" stop="36478"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGVSGSAETLVRKVRQGRTTTMAVPLLNKKVVKKRVKRFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNASELEILMMHNRTYCAEIAHNVSTRKRKEIVERAAQLDVVITNKLARLHSQEDE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36404" stop="36207"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSVFPKWILTHPIAIKCLNFQILVHLCGDKVAVVMLILSNLRNLLWMMRLNVDAALCCTIKRRKYI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="37846" e_stop="37710"/>
            <exon e_start="36893" e_stop="36712"/>
            <exon e_start="36607" e_stop="36205"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.572" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37846" e_stop="37710" e_length="137"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.572">
            <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36893" e_stop="36712" e_length="182"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36607" e_stop="36205" e_length="403"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37846" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281332" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37822" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37820" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37814" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37813" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37809" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37809" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37805" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37787" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37777" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37770" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37763" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37751" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37749" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36886" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36881" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36881" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36880" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36871" stop="36712"/>
              <exon start="36607" stop="36320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36861" stop="36712"/>
              <exon start="36607" stop="36277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36850" stop="36712"/>
              <exon start="36607" stop="36342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36837" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36835" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36826" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36801" stop="36712"/>
              <exon start="36607" stop="36340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597319" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36793" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36785" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36771" stop="36712"/>
              <exon start="36607" stop="36342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36763" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36719" stop="36712"/>
              <exon start="36607" stop="36331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36607" stop="36342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36602" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36538" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222679" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTATTACGTCTATTTCGCAGAAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG : GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG : AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGTGATAAAGTAGCTGTGGTCATGTTAATTCTGTCAAATCTGCGTAATTTACTCTGGATGATGAGGTTGAATGTTGACGCAGCTCTTTGTTGCACAATCAAAAGAAGAAAGTATATTTC</gDNA_template>
            <first_frame> V  L  R  L  F  R  R  R  *  D  K  V  E  Q  Q  Q  W  P  C  L  C  L  T  R  R  S  *  R  R  E  *  R  G  S  L  D  L  R  V  T  E  E  S  L  S  R :   K  A  G  A  D  P  R  V  L  I  L  E  *  G  E  S  S  R  D  V  S  *  C  P  I  L  D  T  G  Q  T  R  R  L  A  T  I  F  P  M  A  S  R  S  S  S  C  I  M  L  A  S  L  R  S  *  *  C  T  T   : E  L  T  V  Q  K  S  H  T  M  F  P  L  G  R  G  K  R  L  S  S  E  L  P  N  L  M  L  S  *  Q  T  S  L  L  G  C  T  A  R  R  M  N  E  H  F  G  F  R  *  D  L  Y  I  V  L  V  F  E  P  V  P  C  V  L  F  N  *  Y  S  V  F  P  K  W  I  L  T  H  P  I  A  I  K  C  L  N  F  Q  I  L  V  H  L  C  G  D  K  V  A  V  V  M  L  I  L  S  N  L  R  N  L  L  W  M  M  R  L  N  V  D  A  A  L  C  C  T  I  K  R  R  K  Y  I   </first_frame>
            <second_frame>  Y  Y  V  Y  F  A  E  G  K  T  R  *  N  N  N  N  G  R  A  S  A  *  Q  E  G  R  E  E  E  S  E  E  V  H  *  T  S  E  *  P  K  N  H  C  Q   : G  K  L  A  Q  T  Q  G  Y  *  F  *  S  E  E  K  V  Q  G  M  C  L  D  A  Q  Y  W  I  R  V  R  Q  E  D  S  P  L  S  S  Q  W  L  Q  E  V  R  R  A  *  C  *  R  A  *  D  P  N  D  A  Q  Q  :  N  L  L  C  R  N  R  T  Q  C  F  H  *  E  E  E  R  D  C  R  A  S  C  P  T  *  C  C  H  N  K  Q  A  C  *  V  A  Q  P  G  G  *  M  S  I  L  A  L  D  E  I  S  I  L  F  *  C  L  N  L  F  L  V  F  C  L  I  N  T  L  F  S  R  S  G  F  *  H  I  L  L  L  S  N  A  *  I  F  R  F  *  Y  T  F  V  V  I  K  *  L  W  S  C  *  F  C  Q  I  C  V  I  Y  S  G  *  *  G  *  M  L  T  Q  L  F  V  A  Q  S  K  E  E  S  I  F  </second_frame>
            <third_frame>   I  T  S  I  S  Q  K  V  R  Q  G  R  T  T  T  M  A  V  P  L  L  N  K  K  V  V  K  K  R  V  K  R  F  I  R  P  Q  S  D  R  R  I  T  V  K  :  E  S  W  R  R  P  K  G  I  D  S  R  V  R  R  K  F  K  G  C  V  L  M  P  N  I  G  Y  G  S  D  K  K  T  R  H  Y  L  P  N  G  F  K  K  F  V  V  H  N  A  S  E  L  E  I  L  M  M  H  N  R :   T  Y  C  A  E  I  A  H  N  V  S  T  R  K  R  K  E  I  V  E  R  A  A  Q  L  D  V  V  I  T  N  K  L  A  R  L  H  S  Q  E  D  E  *  A  F  W  L  *  M  R  S  L  Y  C  F  S  V  *  T  C  S  L  C  F  V  *  L  I  L  C  F  P  E  V  D  F  D  T  S  Y  C  Y  Q  M  L  K  F  S  D  F  S  T  P  L  W  *  *  S  S  C  G  H  V  N  S  V  K  S  A  *  F  T  L  D  D  E  V  E  C  *  R  S  S  L  L  H  N  Q  K  K  K  V  Y  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37844" stop="37710"/>
                    <exon start="36893" stop="36712"/>
                    <exon start="36607" stop="36478"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITSISQKVRQGRTTTMAVPLLNKKVVKKRVKRFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNASELEILMMHNRTYCAEIAHNVSTRKRKEIVERAAQLDVVITNKLARLHSQEDE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36404" stop="36207"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSVFPKWILTHPIAIKCLNFQILVHLCGDKVAVVMLILSNLRNLLWMMRLNVDAALCCTIKRRKYI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="37897" e_stop="37888"/>
            <exon e_start="37826" e_stop="37710"/>
            <exon e_start="36893" e_stop="36712"/>
            <exon e_start="36607" e_stop="36205"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.995" e_score="0.700"/>
          <exon-intron don_prob="0.996" acc_prob="0.572" e_score="0.991"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.700">
            <gDNA_exon_boundary e_start="37897" e_stop="37888" e_length="10"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.995">
            <gDNA_intron_boundary i_start="37887" i_stop="37827" i_length="61"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="37826" e_stop="37710" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.572">
            <gDNA_intron_boundary i_start="37709" i_stop="36894" i_length="816"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="36893" e_stop="36712" e_length="182"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="36607" e_stop="36205" e_length="403"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37897" stop="37888"/>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37826" stop="37710"/>
              <exon start="36893" stop="36799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281332" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37822" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37820" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37814" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37813" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37809" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37809" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37805" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37787" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37777" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37770" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37763" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37751" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37749" stop="37710"/>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36886" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36881" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36881" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36880" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36871" stop="36712"/>
              <exon start="36607" stop="36320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36861" stop="36712"/>
              <exon start="36607" stop="36277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36850" stop="36712"/>
              <exon start="36607" stop="36342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36837" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36835" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36826" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36801" stop="36712"/>
              <exon start="36607" stop="36340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597319" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36793" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36785" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36771" stop="36712"/>
              <exon start="36607" stop="36342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36763" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36719" stop="36712"/>
              <exon start="36607" stop="36331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36607" stop="36342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36602" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36538" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222679" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTCTTCCA : AAGGTAAGACAAGGTAGAACAACAACAATGGCCGTGCCTCTGCTTAACAAGAAGGTCGTGAAGAAGAGAGTGAAGAGGTTCATTAGACCTCAGAGTGACCGAAGAATCACTGTCAAG : GAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG : AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGTGATAAAGTAGCTGTGGTCATGTTAATTCTGTCAAATCTGCGTAATTTACTCTGGATGATGAGGTTGAATGTTGACGCAGCTCTTTGTTGCACAATCAAAAGAAGAAAGTATATTTC</gDNA_template>
            <first_frame> L  S  S   : K  G  K  T  R  *  N  N  N  N  G  R  A  S  A  *  Q  E  G  R  E  E  E  S  E  E  V  H  *  T  S  E  *  P  K  N  H  C  Q   : G  K  L  A  Q  T  Q  G  Y  *  F  *  S  E  E  K  V  Q  G  M  C  L  D  A  Q  Y  W  I  R  V  R  Q  E  D  S  P  L  S  S  Q  W  L  Q  E  V  R  R  A  *  C  *  R  A  *  D  P  N  D  A  Q  Q  :  N  L  L  C  R  N  R  T  Q  C  F  H  *  E  E  E  R  D  C  R  A  S  C  P  T  *  C  C  H  N  K  Q  A  C  *  V  A  Q  P  G  G  *  M  S  I  L  A  L  D  E  I  S  I  L  F  *  C  L  N  L  F  L  V  F  C  L  I  N  T  L  F  S  R  S  G  F  *  H  I  L  L  L  S  N  A  *  I  F  R  F  *  Y  T  F  V  V  I  K  *  L  W  S  C  *  F  C  Q  I  C  V  I  Y  S  G  *  *  G  *  M  L  T  Q  L  F  V  A  Q  S  K  E  E  S  I  F  </first_frame>
            <second_frame>  S  L  P  :  K  V  R  Q  G  R  T  T  T  M  A  V  P  L  L  N  K  K  V  V  K  K  R  V  K  R  F  I  R  P  Q  S  D  R  R  I  T  V  K  :  E  S  W  R  R  P  K  G  I  D  S  R  V  R  R  K  F  K  G  C  V  L  M  P  N  I  G  Y  G  S  D  K  K  T  R  H  Y  L  P  N  G  F  K  K  F  V  V  H  N  A  S  E  L  E  I  L  M  M  H  N  R :   T  Y  C  A  E  I  A  H  N  V  S  T  R  K  R  K  E  I  V  E  R  A  A  Q  L  D  V  V  I  T  N  K  L  A  R  L  H  S  Q  E  D  E  *  A  F  W  L  *  M  R  S  L  Y  C  F  S  V  *  T  C  S  L  C  F  V  *  L  I  L  C  F  P  E  V  D  F  D  T  S  Y  C  Y  Q  M  L  K  F  S  D  F  S  T  P  L  W  *  *  S  S  C  G  H  V  N  S  V  K  S  A  *  F  T  L  D  D  E  V  E  C  *  R  S  S  L  L  H  N  Q  K  K  K  V  Y  F </second_frame>
            <third_frame>   L  F  Q :   R  *  D  K  V  E  Q  Q  Q  W  P  C  L  C  L  T  R  R  S  *  R  R  E  *  R  G  S  L  D  L  R  V  T  E  E  S  L  S  R :   K  A  G  A  D  P  R  V  L  I  L  E  *  G  E  S  S  R  D  V  S  *  C  P  I  L  D  T  G  Q  T  R  R  L  A  T  I  F  P  M  A  S  R  S  S  S  C  I  M  L  A  S  L  R  S  *  *  C  T  T   : E  L  T  V  Q  K  S  H  T  M  F  P  L  G  R  G  K  R  L  S  S  E  L  P  N  L  M  L  S  *  Q  T  S  L  L  G  C  T  A  R  R  M  N  E  H  F  G  F  R  *  D  L  Y  I  V  L  V  F  E  P  V  P  C  V  L  F  N  *  Y  S  V  F  P  K  W  I  L  T  H  P  I  A  I  K  C  L  N  F  Q  I  L  V  H  L  C  G  D  K  V  A  V  V  M  L  I  L  S  N  L  R  N  L  L  W  M  M  R  L  N  V  D  A  A  L  C  C  T  I  K  R  R  K  Y  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37896" stop="37888"/>
                    <exon start="37826" stop="37710"/>
                    <exon start="36893" stop="36712"/>
                    <exon start="36607" stop="36478"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLPKVRQGRTTTMAVPLLNKKVVKKRVKRFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNASELEILMMHNRTYCAEIAHNVSTRKRKEIVERAAQLDVVITNKLARLHSQEDE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36404" stop="36207"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSVFPKWILTHPIAIKCLNFQILVHLCGDKVAVVMLILSNLRNLLWMMRLNVDAALCCTIKRRKYI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="36901" e_stop="36712"/>
            <exon e_start="36607" e_stop="36277"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="0.995"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="36901" e_stop="36712" e_length="190"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="36711" i_stop="36608" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="36607" e_stop="36277" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36901" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36893" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36886" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36881" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36881" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36880" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36871" stop="36712"/>
              <exon start="36607" stop="36320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36861" stop="36712"/>
              <exon start="36607" stop="36277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36850" stop="36712"/>
              <exon start="36607" stop="36342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36837" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36835" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36826" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36801" stop="36712"/>
              <exon start="36607" stop="36340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597319" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36793" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36785" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36771" stop="36712"/>
              <exon start="36607" stop="36342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36763" stop="36712"/>
              <exon start="36607" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218225" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36719" stop="36712"/>
              <exon start="36607" stop="36331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36607" stop="36342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36602" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36538" stop="36336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222679" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATAATAGGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTAGAGTGAGGAGAAAGTTCAAGGGATGTGTCTTGATGCCCAATATTGGATACGGGTCAGACAAGAAGACTCGCCACTATCTTCCCAATGGCTTCAAGAAGTTCGTCGTGCATAATGCTAGCGAGCTTGAGATCCTAATGATGCACAACAG : AACTTACTGTGCAGAAATCGCACACAATGTTTCCACTAGGAAGAGGAAAGAGATTGTCGAGCGAGCTGCCCAACTTGATGTTGTCATAACAAACAAGCTTGCTAGGTTGCACAGCCAGGAGGATGAATGAGCATTTTGGCTTTAGATGAGATCTCTATATTGTTTTAGTGTTTGAACCTGTTCCTTGTGTTTTGTTTAATTAATACTCTGTTTTCCCGAAGTGGATTTTGACACATCCTATTGCTATCAAATGCTTAAATTTTCAGATTTTAGTACACCTTTGTGGTGATAAAGTAGCTGTGGTCATGTTAATTCTGTCAAATCTGCGTAA</gDNA_template>
            <first_frame> Y  N  R  K  A  G  A  D  P  R  V  L  I  L  E  *  G  E  S  S  R  D  V  S  *  C  P  I  L  D  T  G  Q  T  R  R  L  A  T  I  F  P  M  A  S  R  S  S  S  C  I  M  L  A  S  L  R  S  *  *  C  T  T   : E  L  T  V  Q  K  S  H  T  M  F  P  L  G  R  G  K  R  L  S  S  E  L  P  N  L  M  L  S  *  Q  T  S  L  L  G  C  T  A  R  R  M  N  E  H  F  G  F  R  *  D  L  Y  I  V  L  V  F  E  P  V  P  C  V  L  F  N  *  Y  S  V  F  P  K  W  I  L  T  H  P  I  A  I  K  C  L  N  F  Q  I  L  V  H  L  C  G  D  K  V  A  V  V  M  L  I  L  S  N  L  R   </first_frame>
            <second_frame>  I  I  G  K  L  A  Q  T  Q  G  Y  *  F  *  S  E  E  K  V  Q  G  M  C  L  D  A  Q  Y  W  I  R  V  R  Q  E  D  S  P  L  S  S  Q  W  L  Q  E  V  R  R  A  *  C  *  R  A  *  D  P  N  D  A  Q  Q  :  N  L  L  C  R  N  R  T  Q  C  F  H  *  E  E  E  R  D  C  R  A  S  C  P  T  *  C  C  H  N  K  Q  A  C  *  V  A  Q  P  G  G  *  M  S  I  L  A  L  D  E  I  S  I  L  F  *  C  L  N  L  F  L  V  F  C  L  I  N  T  L  F  S  R  S  G  F  *  H  I  L  L  L  S  N  A  *  I  F  R  F  *  Y  T  F  V  V  I  K  *  L  W  S  C  *  F  C  Q  I  C  V  </second_frame>
            <third_frame>   *  *  E  S  W  R  R  P  K  G  I  D  S  R  V  R  R  K  F  K  G  C  V  L  M  P  N  I  G  Y  G  S  D  K  K  T  R  H  Y  L  P  N  G  F  K  K  F  V  V  H  N  A  S  E  L  E  I  L  M  M  H  N  R :   T  Y  C  A  E  I  A  H  N  V  S  T  R  K  R  K  E  I  V  E  R  A  A  Q  L  D  V  V  I  T  N  K  L  A  R  L  H  S  Q  E  D  E  *  A  F  W  L  *  M  R  S  L  Y  C  F  S  V  *  T  C  S  L  C  F  V  *  L  I  L  C  F  P  E  V  D  F  D  T  S  Y  C  Y  Q  M  L  K  F  S  D  F  S  T  P  L  W  *  *  S  S  C  G  H  V  N  S  V  K  S  A  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36893" stop="36712"/>
                    <exon start="36607" stop="36478"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESWRRPKGIDSRVRRKFKGCVLMPNIGYGSDKKTRHYLPNGFKKFVVHNASELEILMMHNRTYCAEIAHNVSTRKRKEIVERAAQLDVVITNKLARLHSQEDE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="42719" PGL_stop="45074"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42719" e_stop="42799"/>
            <exon e_start="43558" e_stop="43635"/>
            <exon e_start="43730" e_stop="43910"/>
            <exon e_start="44188" e_stop="44285"/>
            <exon e_start="44420" e_stop="45074"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.600" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42719" e_stop="42799" e_length="81"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43558" e_stop="43635" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43730" e_stop="43910" e_length="181"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.600">
            <gDNA_intron_boundary i_start="43911" i_stop="44187" i_length="277"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="44188" e_stop="44285" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.981">
            <gDNA_intron_boundary i_start="44286" i_stop="44419" i_length="134"/>
          </intron>
          <exon e_serial="5" e_score="0.989">
            <gDNA_exon_boundary e_start="44420" e_stop="45074" e_length="655"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42719" stop="42799"/>
              <exon start="43558" stop="43635"/>
              <exon start="43730" stop="43910"/>
              <exon start="44188" stop="44285"/>
              <exon start="44420" stop="44871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42728" stop="42799"/>
              <exon start="43558" stop="43635"/>
              <exon start="43730" stop="43910"/>
              <exon start="44188" stop="44285"/>
              <exon start="44420" stop="44807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42728" stop="42799"/>
              <exon start="43558" stop="43635"/>
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              <exon start="44420" stop="44806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718844" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="44420" stop="44841"/>
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            <referenceDNA id="SGN-E556188" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="44420" stop="44808"/>
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            <referenceDNA id="SGN-E556280" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E214317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42731" stop="42799"/>
              <exon start="43558" stop="43635"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42734" stop="42799"/>
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              <exon start="44420" stop="44668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="44420" stop="44907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42735" stop="42799"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270950" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42736" stop="42799"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42736" stop="42799"/>
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              <exon start="44420" stop="44489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42736" stop="42799"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275846" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E341631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E319525" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42740" stop="42799"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42742" stop="42799"/>
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              <exon start="44420" stop="44719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42742" stop="42799"/>
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              <exon start="44420" stop="44586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42742" stop="42799"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42745" stop="42799"/>
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            <referenceDNA id="SGN-E285583" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E406380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42765" stop="42799"/>
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              <exon start="44420" stop="44596"/>
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            <referenceDNA id="SGN-E468652" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42768" stop="42799"/>
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            <referenceDNA id="SGN-E441459" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E399690" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E476092" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42770" stop="42799"/>
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              <exon start="44420" stop="44669"/>
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            <referenceDNA id="SGN-E412716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42770" stop="42799"/>
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            <referenceDNA id="SGN-E471139" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E459564" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E460356" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E275587" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E275582" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E475760" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E468857" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E563020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43558" stop="43635"/>
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            <referenceDNA id="SGN-E437848" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E474590" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43571" stop="43635"/>
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            <referenceDNA id="SGN-E303033" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43577" stop="43635"/>
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            <referenceDNA id="SGN-E730435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43597" stop="43635"/>
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            <referenceDNA id="SGN-E569916" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43606" stop="43635"/>
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            <referenceDNA id="SGN-E286384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43617" stop="43635"/>
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              <exon start="44188" stop="44242"/>
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            <referenceDNA id="SGN-E565631" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43623" stop="43635"/>
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            <referenceDNA id="SGN-E406476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43633" stop="43635"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43745" stop="43910"/>
              <exon start="44188" stop="44285"/>
              <exon start="44420" stop="44634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43783" stop="43910"/>
              <exon start="44188" stop="44285"/>
              <exon start="44420" stop="44550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43885" stop="43910"/>
              <exon start="44188" stop="44285"/>
              <exon start="44420" stop="44980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44207" stop="44285"/>
              <exon start="44420" stop="45074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44420" stop="45046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44563" stop="45020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44581" stop="45020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44716" stop="44925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215372" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCGTTAGGGTTTAGGAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG : GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT : GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGG : ACGTTGTTACGATTCCAAAGACAAATGAGAGTTTCAGACTTCTTTATGACACTAAGGGTCGATTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG : TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGTAATATTTCTCTTTGTTTAGAGGGATGCCATTCTTATTTTTGTGTTGCATTTTGACATCTGTGTACTCGGTACTGCTTTACATACCTTTTTTATTTTGTCAGGAACAAGAAAGACAGTTTTGATCAATCAGTTGCCTTCTATGTGATAGTATTTTATTTTTATTGCCACAGAGTTTAATG</gDNA_template>
            <first_frame> S  R  *  G  L  G  D  T  P  L  A  G  R  R  H  S  P  H  L  I  S  R  K  T  A  K  M  :  A  R  G  L  K  K  H  L  K  R  L  N  A  P  K  H  W  M  L  D  K  L  G  G  A  F  :  A  P  K  P  S  S  G  P  H  K  S  R  E  C  L  P  L  V  I  I  L  R  N  R  L  K  Y  A  L  T  Y  R  E  V  I  S  I  L  M  Q  R  Q  V  M  V  D  G  K  I  R  T  D  K  T  Y  P  A  G  F  M   : D  V  V  T  I  P  K  T  N  E  S  F  R  L  L  Y  D  T  K  G  R  F  R  L  H  S  L  R  D  E  E  A  K  :  F  K  L  C  K  V  R  S  V  Q  F  G  Q  K  G  I  P  Y  L  N  T  Y  D  G  R  T  I  R  Y  P  D  P  L  I  K  A  N  D  T  I  K  L  D  L  D  S  N  K  I  V  D  F  I  K  F  D  V  G  N  V  V  M  V  T  G  G  R  N  R  G  R  V  G  I  L  K  N  R  E  K  H  K  G  S  F  E  T  V  H  I  Q  D  S  L  G  H  E  F  A  T  R  L  G  N  V  F  T  L  G  K  G  S  K  P  W  V  S  L  P  K  G  K  G  I  K  L  S  I  I  E  E  A  R  K  R  M  A  A  Q  S  A  T  T  A  *  K  S  *  V  E  L  E  M  N  L  I  G  S  V  I  F  L  F  V  *  R  D  A  I  L  I  F  V  L  H  F  D  I  C  V  L  G  T  A  L  H  T  F  F  I  L  S  G  T  R  K  T  V  L  I  N  Q  L  P  S  M  *  *  Y  F  I  F  I  A  T  E  F  N  </first_frame>
            <second_frame>  L  V  R  V  *  E  T  H  L  S  P  V  D  V  T  R  R  I  *  S  V  G  K  P  P  K  W :   Q  E  G  *  R  N  I  *  R  G  S  M  R  L  S  I  G  C  L  I  N  L  E  V  L  L :   L  L  S  L  L  L  V  L  I  N  Q  G  N  V  C  H  W  L  L  S  S  G  T  G  *  N  M  H  *  H  T  V  R  S  F  L  S  *  C  N  A  K  L  W  L  M  G  K  L  G  Q  I  K  H  T  L  L  V  S  W  :  T  L  L  R  F  Q  R  Q  M  R  V  S  D  F  F  M  T  L  R  V  D  S  V  S  T  H  S  E  M  R  K  P  S :   S  N  F  A  R  F  D  Q  C  S  L  D  R  R  E  S  H  I  S  I  L  M  M  E  E  Q  S  A  T  L  I  P  S  S  R  P  M  T  P  S  S  W  T  *  I  P  I  R  L  L  T  S  S  N  L  M  L  V  M  W  S  W  *  L  V  V  E  T  G  D  V  L  E  S  L  R  I  E  R  S  T  R  V  A  L  R  Q  F  T  F  R  T  P  W  G  T  S  L  L  L  V  W  A  M  C  S  L  L  V  R  V  V  S  H  G  C  L  Y  L  R  V  K  V  S  S  Y  L  S  L  K  R  L  A  R  G  W  L  L  N  Q  L  Q  L  L  K  N  H  R  L  N  L  R  *  I  *  *  V  R  *  Y  F  S  L  F  R  G  M  P  F  L  F  L  C  C  I  L  T  S  V  Y  S  V  L  L  Y  I  P  F  L  F  C  Q  E  Q  E  R  Q  F  *  S  I  S  C  L  L  C  D  S  I  L  F  L  L  P  Q  S  L  M </second_frame>
            <third_frame>   S  L  G  F  R  R  H  T  S  R  R  *  T  S  L  A  A  F  N  Q  S  E  N  R  Q  N   : G  K  R  V  E  E  T  F  E  E  A  Q  C  A  *  A  L  D  A  *  *  T  W  R  C  F   : C  S  *  A  F  F  W  S  S  *  I  K  G  M  F  A  T  G  Y  Y  P  Q  E  P  V  E  I  C  I  D  I  P  *  G  H  F  Y  L  D  A  T  P  S  Y  G  *  W  E  N  *  D  R  *  N  I  P  C  W  F  H  G :   R  C  Y  D  S  K  D  K  *  E  F  Q  T  S  L  *  H  *  G  S  I  P  S  P  L  T  Q  R  *  G  S  Q   : V  Q  T  L  Q  G  S  I  S  A  V  W  T  E  G  N  P  I  S  Q  Y  L  *  W  K  N  N  P  L  P  *  S  P  H  Q  G  Q  *  H  H  Q  A  G  L  R  F  Q  *  D  C  *  L  H  Q  I  *  C  W  *  C  G  H  G  D  W  W  *  K  Q  G  T  C  W  N  P  *  E  *  R  E  A  Q  G  *  L  *  D  S  S  H  S  G  L  P  G  A  R  V  C  Y  S  S  G  Q  C  V  H  S  W  *  G  *  *  A  M  G  V  S  T  *  G  *  R  Y  Q  V  I  Y  H  *  R  G  S  Q  E  D  G  C  S  I  S  Y  N  C  L  K  I  I  G  *  T  *  D  E  F  N  R  F  G  N  I  S  L  C  L  E  G  C  H  S  Y  F  C  V  A  F  *  H  L  C  T  R  Y  C  F  T  Y  L  F  Y  F  V  R  N  K  K  D  S  F  D  Q  S  V  A  F  Y  V  I  V  F  Y  F  Y  C  H  R  V  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42728" stop="42799"/>
                    <exon start="43558" stop="43635"/>
                    <exon start="43730" stop="43910"/>
                    <exon start="44188" stop="44285"/>
                    <exon start="44420" stop="44854"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>861</number_coding_nucleotides>
                  <number_encoded_amino_acids>287</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLGDTPLAGRRHSPHLISRKTAKMARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIILRNRLKYALTYREVISILMQRQVMVDGKIRTDKTYPAGFMDVVTIPKTNESFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNVVMVTGGRNRGRVGILKNREKHKGSFETVHIQDSLGHEFATRLGNVFTLGKGSKPWVSLPKGKGIKLSIIEEARKRMAAQSATTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="42731" e_stop="42799"/>
            <exon e_start="43558" e_stop="43635"/>
            <exon e_start="43730" e_stop="43910"/>
            <exon e_start="44420" e_stop="45046"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="0.986"/>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.981" e_score="0.982"/>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="42731" e_stop="42799" e_length="69"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43558" e_stop="43635" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="43636" i_stop="43729" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="0.982">
            <gDNA_exon_boundary e_start="43730" e_stop="43910" e_length="181"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.981">
            <gDNA_intron_boundary i_start="43911" i_stop="44419" i_length="509"/>
          </intron>
          <exon e_serial="4" e_score="0.939">
            <gDNA_exon_boundary e_start="44420" e_stop="45046" e_length="627"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42731" stop="42799"/>
              <exon start="43558" stop="43635"/>
              <exon start="43730" stop="43899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43874" stop="43910"/>
              <exon start="44420" stop="44990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44420" stop="45046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44563" stop="45020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44581" stop="45020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44716" stop="44925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215372" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGGAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG : GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT : GCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGG : TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGAATCCCATATCTCAATACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGTAATGTGGTCATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATCCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGTAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATCATAGGTTGAACTTGAGATGAATTTAATAGGTTCGGTAATATTTCTCTTTGTTTAGAGGGATGCCATTCTTATTTTTGTGTTGCATTTTGACATCTGTGTACTCGGTACTGCTTTACATACCTTTTTTATTTTGTCAGGAACAAGAAAGACAGTTTTGATCAATCAGTTGCCTTCTATGTGATAGTAT</gDNA_template>
            <first_frame> L  G  D  T  P  L  A  G  R  R  H  S  P  H  L  I  S  R  K  T  A  K  M  :  A  R  G  L  K  K  H  L  K  R  L  N  A  P  K  H  W  M  L  D  K  L  G  G  A  F  :  A  P  K  P  S  S  G  P  H  K  S  R  E  C  L  P  L  V  I  I  L  R  N  R  L  K  Y  A  L  T  Y  R  E  V  I  S  I  L  M  Q  R  Q  V  M  V  D  G  K  I  R  T  D  K  T  Y  P  A  G  F  M   : V  Q  T  L  Q  G  S  I  S  A  V  W  T  E  G  N  P  I  S  Q  Y  L  *  W  K  N  N  P  L  P  *  S  P  H  Q  G  Q  *  H  H  Q  A  G  L  R  F  Q  *  D  C  *  L  H  Q  I  *  C  W  *  C  G  H  G  D  W  W  *  K  Q  G  T  C  W  N  P  *  E  *  R  E  A  Q  G  *  L  *  D  S  S  H  S  G  L  P  G  A  R  V  C  Y  S  S  G  Q  C  V  H  S  W  *  G  *  *  A  M  G  V  S  T  *  G  *  R  Y  Q  V  I  Y  H  *  R  G  S  Q  E  D  G  C  S  I  S  Y  N  C  L  K  I  I  G  *  T  *  D  E  F  N  R  F  G  N  I  S  L  C  L  E  G  C  H  S  Y  F  C  V  A  F  *  H  L  C  T  R  Y  C  F  T  Y  L  F  Y  F  V  R  N  K  K  D  S  F  D  Q  S  V  A  F  Y  V  I  V  </first_frame>
            <second_frame>  *  E  T  H  L  S  P  V  D  V  T  R  R  I  *  S  V  G  K  P  P  K  W :   Q  E  G  *  R  N  I  *  R  G  S  M  R  L  S  I  G  C  L  I  N  L  E  V  L  L :   L  L  S  L  L  L  V  L  I  N  Q  G  N  V  C  H  W  L  L  S  S  G  T  G  *  N  M  H  *  H  T  V  R  S  F  L  S  *  C  N  A  K  L  W  L  M  G  K  L  G  Q  I  K  H  T  L  L  V  S  W  :  F  K  L  C  K  V  R  S  V  Q  F  G  Q  K  G  I  P  Y  L  N  T  Y  D  G  R  T  I  R  Y  P  D  P  L  I  K  A  N  D  T  I  K  L  D  L  D  S  N  K  I  V  D  F  I  K  F  D  V  G  N  V  V  M  V  T  G  G  R  N  R  G  R  V  G  I  L  K  N  R  E  K  H  K  G  S  F  E  T  V  H  I  Q  D  S  L  G  H  E  F  A  T  R  L  G  N  V  F  T  L  G  K  G  S  K  P  W  V  S  L  P  K  G  K  G  I  K  L  S  I  I  E  E  A  R  K  R  M  A  A  Q  S  A  T  T  A  *  K  S  *  V  E  L  E  M  N  L  I  G  S  V  I  F  L  F  V  *  R  D  A  I  L  I  F  V  L  H  F  D  I  C  V  L  G  T  A  L  H  T  F  F  I  L  S  G  T  R  K  T  V  L  I  N  Q  L  P  S  M  *  *  Y </second_frame>
            <third_frame>   R  R  H  T  S  R  R  *  T  S  L  A  A  F  N  Q  S  E  N  R  Q  N   : G  K  R  V  E  E  T  F  E  E  A  Q  C  A  *  A  L  D  A  *  *  T  W  R  C  F   : C  S  *  A  F  F  W  S  S  *  I  K  G  M  F  A  T  G  Y  Y  P  Q  E  P  V  E  I  C  I  D  I  P  *  G  H  F  Y  L  D  A  T  P  S  Y  G  *  W  E  N  *  D  R  *  N  I  P  C  W  F  H  G :   S  N  F  A  R  F  D  Q  C  S  L  D  R  R  E  S  H  I  S  I  L  M  M  E  E  Q  S  A  T  L  I  P  S  S  R  P  M  T  P  S  S  W  T  *  I  P  I  R  L  L  T  S  S  N  L  M  L  V  M  W  S  W  *  L  V  V  E  T  G  D  V  L  E  S  L  R  I  E  R  S  T  R  V  A  L  R  Q  F  T  F  R  T  P  W  G  T  S  L  L  L  V  W  A  M  C  S  L  L  V  R  V  V  S  H  G  C  L  Y  L  R  V  K  V  S  S  Y  L  S  L  K  R  L  A  R  G  W  L  L  N  Q  L  Q  L  L  K  N  H  R  L  N  L  R  *  I  *  *  V  R  *  Y  F  S  L  F  R  G  M  P  F  L  F  L  C  C  I  L  T  S  V  Y  S  V  L  L  Y  I  P  F  L  F  C  Q  E  Q  E  R  Q  F  *  S  I  S  C  L  L  C  D  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43845" stop="43910"/>
                    <exon start="44420" stop="44854"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CNAKLWLMGKLGQIKHTLLVSWFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNVVMVTGGRNRGRVGILKNREKHKGSFETVHIQDSLGHEFATRLGNVFTLGKGSKPWVSLPKGKGIKLSIIEEARKRMAAQSATTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="42735" e_stop="42799"/>
            <exon e_start="43558" e_stop="44126"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="0.985"/>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="42735" e_stop="42799" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="42800" i_stop="43557" i_length="758"/>
          </intron>
          <exon e_serial="2" e_score="0.944">
            <gDNA_exon_boundary e_start="43558" e_stop="44126" e_length="569"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42735" stop="42799"/>
              <exon start="43558" stop="44126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322402" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGACACACCTCTCGCCGGTAGACGTCACTCGCCGCATTTAATCAGTCGGAAAACCGCCAAAATG : GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTTGTAAGTGACATGTCTTTCCCCAAGTCTTTTTTTTTATAGTACTACTTAGTTTCCTGCTTCTTGACTTGACTGTTCTCTTTGGTCTCTACTTCAGGCTCCTAAGCCTTCTTCTGGTCCTCATAAATCAAGGGAATGTTTGCCACTGGTTATTATCCTCAGGAACCGGTTGAAATATGCATTGACATACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAATTAGGACAGATAAAACATACCCTGCTGGTTTCATGGGTAAGAACACCTCCATTGGATTGTTTTTTCATTTCAAAACCTTTAGATTATAGTTTCCTTATATCTGTACTGTCTAGGTATTGTTCATTCCAGACGAAAGTAATAATACTGATTCATCTATATACACGTACTTCCCCAGTTCCAAAGACAATTGTTGATCTGTGTACAAAAAATTTCATGAAAATTCATGTTGAGAGTCTCTTTTATTTTTTTTTC</gDNA_template>
            <first_frame> E  T  H  L  S  P  V  D  V  T  R  R  I  *  S  V  G  K  P  P  K  W :   Q  E  G  *  R  N  I  *  R  G  S  M  R  L  S  I  G  C  L  I  N  L  E  V  L  L  *  V  T  C  L  S  P  S  L  F  F  Y  S  T  T  *  F  P  A  S  *  L  D  C  S  L  W  S  L  L  Q  A  P  K  P  S  S  G  P  H  K  S  R  E  C  L  P  L  V  I  I  L  R  N  R  L  K  Y  A  L  T  Y  R  E  V  I  S  I  L  M  Q  R  Q  V  M  V  D  G  K  I  R  T  D  K  T  Y  P  A  G  F  M  G  K  N  T  S  I  G  L  F  F  H  F  K  T  F  R  L  *  F  P  Y  I  C  T  V  *  V  L  F  I  P  D  E  S  N  N  T  D  S  S  I  Y  T  Y  F  P  S  S  K  D  N  C  *  S  V  Y  K  K  F  H  E  N  S  C  *  E  S  L  L  F  F  F  </first_frame>
            <second_frame>  R  H  T  S  R  R  *  T  S  L  A  A  F  N  Q  S  E  N  R  Q  N   : G  K  R  V  E  E  T  F  E  E  A  Q  C  A  *  A  L  D  A  *  *  T  W  R  C  F  C  K  *  H  V  F  P  Q  V  F  F  F  I  V  L  L  S  F  L  L  L  D  L  T  V  L  F  G  L  Y  F  R  L  L  S  L  L  L  V  L  I  N  Q  G  N  V  C  H  W  L  L  S  S  G  T  G  *  N  M  H  *  H  T  V  R  S  F  L  S  *  C  N  A  K  L  W  L  M  G  K  L  G  Q  I  K  H  T  L  L  V  S  W  V  R  T  P  P  L  D  C  F  F  I  S  K  P  L  D  Y  S  F  L  I  S  V  L  S  R  Y  C  S  F  Q  T  K  V  I  I  L  I  H  L  Y  T  R  T  S  P  V  P  K  T  I  V  D  L  C  T  K  N  F  M  K  I  H  V  E  S  L  F  Y  F  F  F </second_frame>
            <third_frame>   D  T  P  L  A  G  R  R  H  S  P  H  L  I  S  R  K  T  A  K  M  :  A  R  G  L  K  K  H  L  K  R  L  N  A  P  K  H  W  M  L  D  K  L  G  G  A  F  V  S  D  M  S  F  P  K  S  F  F  L  *  Y  Y  L  V  S  C  F  L  T  *  L  F  S  L  V  S  T  S  G  S  *  A  F  F  W  S  S  *  I  K  G  M  F  A  T  G  Y  Y  P  Q  E  P  V  E  I  C  I  D  I  P  *  G  H  F  Y  L  D  A  T  P  S  Y  G  *  W  E  N  *  D  R  *  N  I  P  C  W  F  H  G  *  E  H  L  H  W  I  V  F  S  F  Q  N  L  *  I  I  V  S  L  Y  L  Y  C  L  G  I  V  H  S  R  R  K  *  *  Y  *  F  I  Y  I  H  V  L  P  Q  F  Q  R  Q  L  L  I  C  V  Q  K  I  S  *  K  F  M  L  R  V  S  F  I  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43845" stop="44126"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CNAKLWLMGKLGQIKHTLLVSWVRTPPLDCFFISKPLDYSFLISVLSRYCSFQTKVIILIHLYTRTSPVPKTIVDLCTKNFMKIHVESLFYFFF</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43700" stop="43963"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDCSLWSLLQAPKPSSGPHKSRECLPLVIILRNRLKYALTYREVISILMQRQVMVDGKIRTDKTYPAGFMGKNTSIGLFFHFKTFRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="45041" PGL_stop="44467"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45041" e_stop="44467"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="45041" e_stop="44467" e_length="575"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45041" stop="44467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45041" stop="44475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357281" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCACATAGAAGGCAACTGATTGATCAAAACTGTCTTTCTTGTTCCTGACAAAATAAAAAAGGTATGTAAAGCAGTACCGAGTACACAGATGTCAAAATGCAACACAAAAATAAGAATGGCATCCCTCTAAACAAAGAGAAATATTACCGAACCTATTAAATTCATCTCAAGTTCAACCTATGATTTTTAAGCAGTTGTAGCTGATTGAGCAGCCATCCTCTTGCGAGCCTCTTCAATGATAGATAACTTGATACCTTTACCCTTAGGTAGAGACACCCATGGCTTACTACCCTTACCAAGAGTGAACACATTGCCCAGACGAGTAGCAAACTCGTGCCCCAGGGAGTCCTGAATGTGAACTGTCTCAAAGCTACCCTTGTGCTTCTCTCTATTCTTAAGGATTCCAACACGTCCCCTGTTTCTACCACCAGTCACCATGACCACATTACCAACATCAAATTTGATGAAGTCAACAATCTTATTGGAATCTAAGTCCAGCTTGATGGTGTCATTGGCCTTGATGAGGGGATCAGGGTAGCGGATTGTTCTTCCATCATAAGTATTGAGATATGGG</gDNA_template>
            <first_frame> I  T  *  K  A  T  D  *  S  K  L  S  F  L  F  L  T  K  *  K  R  Y  V  K  Q  Y  R  V  H  R  C  Q  N  A  T  Q  K  *  E  W  H  P  S  K  Q  R  E  I  L  P  N  L  L  N  S  S  Q  V  Q  P  M  I  F  K  Q  L  *  L  I  E  Q  P  S  S  C  E  P  L  Q  *  *  I  T  *  Y  L  Y  P  *  V  E  T  P  M  A  Y  Y  P  Y  Q  E  *  T  H  C  P  D  E  *  Q  T  R  A  P  G  S  P  E  C  E  L  S  Q  S  Y  P  C  A  S  L  Y  S  *  G  F  Q  H  V  P  C  F  Y  H  Q  S  P  *  P  H  Y  Q  H  Q  I  *  *  S  Q  Q  S  Y  W  N  L  S  P  A  *  W  C  H  W  P  *  *  G  D  Q  G  S  G  L  F  F  H  H  K  Y  *  D  M   </first_frame>
            <second_frame>  S  H  R  R  Q  L  I  D  Q  N  C  L  S  C  S  *  Q  N  K  K  G  M  *  S  S  T  E  Y  T  D  V  K  M  Q  H  K  N  K  N  G  I  P  L  N  K  E  K  Y  Y  R  T  Y  *  I  H  L  K  F  N  L  *  F  L  S  S  C  S  *  L  S  S  H  P  L  A  S  L  F  N  D  R  *  L  D  T  F  T  L  R  *  R  H  P  W  L  T  T  L  T  K  S  E  H  I  A  Q  T  S  S  K  L  V  P  Q  G  V  L  N  V  N  C  L  K  A  T  L  V  L  L  S  I  L  K  D  S  N  T  S  P  V  S  T  T  S  H  H  D  H  I  T  N  I  K  F  D  E  V  N  N  L  I  G  I  *  V  Q  L  D  G  V  I  G  L  D  E  G  I  R  V  A  D  C  S  S  I  I  S  I  E  I  W  </second_frame>
            <third_frame>   H  I  E  G  N  *  L  I  K  T  V  F  L  V  P  D  K  I  K  K  V  C  K  A  V  P  S  T  Q  M  S  K  C  N  T  K  I  R  M  A  S  L  *  T  K  R  N  I  T  E  P  I  K  F  I  S  S  S  T  Y  D  F  *  A  V  V  A  D  *  A  A  I  L  L  R  A  S  S  M  I  D  N  L  I  P  L  P  L  G  R  D  T  H  G  L  L  P  L  P  R  V  N  T  L  P  R  R  V  A  N  S  C  P  R  E  S  *  M  *  T  V  S  K  L  P  L  C  F  S  L  F  L  R  I  P  T  R  P  L  F  L  P  P  V  T  M  T  T  L  P  T  S  N  L  M  K  S  T  I  L  L  E  S  K  S  S  L  M  V  S  L  A  L  M  R  G  S  G  *  R  I  V  L  P  S  *  V  L  R  Y  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44770" stop="44549"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RHPWLTTLTKSEHIAQTSSKLVPQGVLNVNCLKATLVLLSILKDSNTSPVSTTSHHDHITNIKFDEVNNLIGI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="46611" PGL_stop="49086"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46611" e_stop="46699"/>
            <exon e_start="47538" e_stop="47615"/>
            <exon e_start="47710" e_stop="47890"/>
            <exon e_start="48159" e_stop="48256"/>
            <exon e_start="48346" e_stop="49086"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="0.989"/>
          <exon-intron don_prob="0.984" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="46611" e_stop="46699" e_length="89"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="46700" i_stop="47537" i_length="838"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47538" e_stop="47615" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.978">
            <gDNA_intron_boundary i_start="47616" i_stop="47709" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47710" e_stop="47890" e_length="181"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.924">
            <gDNA_intron_boundary i_start="47891" i_stop="48158" i_length="268"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48159" e_stop="48256" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="48257" i_stop="48345" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="48346" e_stop="49086" e_length="741"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46611" stop="46699"/>
              <exon start="47538" stop="47615"/>
              <exon start="47710" stop="47890"/>
              <exon start="48159" stop="48229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46635" stop="46699"/>
              <exon start="47538" stop="47615"/>
              <exon start="47710" stop="47890"/>
              <exon start="48159" stop="48256"/>
              <exon start="48346" stop="48634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46638" stop="46699"/>
              <exon start="47538" stop="47615"/>
              <exon start="47710" stop="47890"/>
              <exon start="48159" stop="48256"/>
              <exon start="48346" stop="48827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46640" stop="46699"/>
              <exon start="47538" stop="47615"/>
              <exon start="47710" stop="47890"/>
              <exon start="48159" stop="48256"/>
              <exon start="48346" stop="48540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46645" stop="46699"/>
              <exon start="47538" stop="47615"/>
              <exon start="47710" stop="47890"/>
              <exon start="48159" stop="48256"/>
              <exon start="48346" stop="48646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46648" stop="46699"/>
              <exon start="47538" stop="47615"/>
              <exon start="47710" stop="47890"/>
              <exon start="48159" stop="48256"/>
              <exon start="48346" stop="48476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46648" stop="46699"/>
              <exon start="47538" stop="47615"/>
              <exon start="47710" stop="47890"/>
              <exon start="48159" stop="48256"/>
              <exon start="48346" stop="48422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46648" stop="46699"/>
              <exon start="47538" stop="47615"/>
              <exon start="47710" stop="47890"/>
              <exon start="48159" stop="48210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46649" stop="46699"/>
              <exon start="47538" stop="47615"/>
              <exon start="47710" stop="47890"/>
              <exon start="48159" stop="48256"/>
              <exon start="48346" stop="48684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46650" stop="46699"/>
              <exon start="47538" stop="47615"/>
              <exon start="47710" stop="47890"/>
              <exon start="48159" stop="48256"/>
              <exon start="48346" stop="48692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46652" stop="46699"/>
              <exon start="47538" stop="47615"/>
              <exon start="47710" stop="47890"/>
              <exon start="48159" stop="48256"/>
              <exon start="48346" stop="48701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46653" stop="46699"/>
              <exon start="47538" stop="47615"/>
              <exon start="47710" stop="47890"/>
              <exon start="48159" stop="48210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46654" stop="46699"/>
              <exon start="47538" stop="47615"/>
              <exon start="47710" stop="47890"/>
              <exon start="48159" stop="48256"/>
              <exon start="48346" stop="48655"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46654" stop="46699"/>
              <exon start="47538" stop="47615"/>
              <exon start="47710" stop="47890"/>
              <exon start="48159" stop="48256"/>
              <exon start="48346" stop="48419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46654" stop="46699"/>
              <exon start="47538" stop="47615"/>
              <exon start="47710" stop="47890"/>
              <exon start="48159" stop="48215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46654" stop="46699"/>
              <exon start="47538" stop="47615"/>
              <exon start="47710" stop="47890"/>
              <exon start="48159" stop="48210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46654" stop="46699"/>
              <exon start="47538" stop="47615"/>
              <exon start="47710" stop="47856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46655" stop="46699"/>
              <exon start="47538" stop="47615"/>
              <exon start="47710" stop="47890"/>
              <exon start="48159" stop="48256"/>
              <exon start="48346" stop="48524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46658" stop="46699"/>
              <exon start="47538" stop="47615"/>
              <exon start="47710" stop="47890"/>
              <exon start="48159" stop="48256"/>
              <exon start="48346" stop="48474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46659" stop="46699"/>
              <exon start="47538" stop="47615"/>
              <exon start="47710" stop="47890"/>
              <exon start="48159" stop="48256"/>
              <exon start="48346" stop="48662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46659" stop="46699"/>
              <exon start="47538" stop="47615"/>
              <exon start="47710" stop="47890"/>
              <exon start="48159" stop="48256"/>
              <exon start="48346" stop="48569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46668" stop="46699"/>
              <exon start="47538" stop="47615"/>
              <exon start="47710" stop="47890"/>
              <exon start="48159" stop="48256"/>
              <exon start="48346" stop="48525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46683" stop="46699"/>
              <exon start="47538" stop="47615"/>
              <exon start="47710" stop="47890"/>
              <exon start="48159" stop="48256"/>
              <exon start="48346" stop="48461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47547" stop="47615"/>
              <exon start="47710" stop="47890"/>
              <exon start="48159" stop="48256"/>
              <exon start="48346" stop="48578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47547" stop="47615"/>
              <exon start="47710" stop="47890"/>
              <exon start="48159" stop="48256"/>
              <exon start="48346" stop="48373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47574" stop="47615"/>
              <exon start="47710" stop="47890"/>
              <exon start="48159" stop="48256"/>
              <exon start="48346" stop="48524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47598" stop="47615"/>
              <exon start="47710" stop="47890"/>
              <exon start="48159" stop="48256"/>
              <exon start="48346" stop="48529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47845" stop="47890"/>
              <exon start="48159" stop="48256"/>
              <exon start="48346" stop="48955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48195" stop="48256"/>
              <exon start="48346" stop="48947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48195" stop="48256"/>
              <exon start="48346" stop="48917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48348" stop="48947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48382" stop="48971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48383" stop="48978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48383" stop="48971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48481" stop="48947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265906" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48626" stop="49086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612038" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATCTTCGACTCGTTAGGGTTTAAGACAAACACATCTCGCCGGTAGCCATCACTCGCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG : GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT : GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG : ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG : TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTGCCTTCTATGTTATAGTATTTTATTGCGACTGAGTTTAAGGACACCTTGTCCATGAGTTTATTAACTTAATTCAAAATGAGTTTTTGGTTGTAATATTTTTTAAACTGACCCGGAGTTGGATTCCAAATTTG</gDNA_template>
            <first_frame> Y  L  R  L  V  R  V  *  D  K  H  I  S  P  V  A  I  T  R  G  S  *  S  V  G  K  P  P  K  W :   Q  E  G  *  R  N  I  *  R  G  S  M  R  L  S  I  G  C  L  I  N  L  E  V  L  L :   L  P  S  L  L  L  V  H  I  N  Q  G  N  V  C  H  W  L  L  S  *  G  T  G  *  N  M  L  *  L  T  V  R  S  F  L  S  *  C  N  A  K  L  W  L  M  G  K  L  G  R  T  R  L  T  L  L  V  S  W  :  M  L  L  L  F  Q  R  Q  M  R  V  S  D  F  F  M  T  L  R  A  G  S  V  S  T  H  S  E  M  R  K  P  S :   S  N  F  V  R  F  D  Q  C  S  L  D  R  R  G  S  H  I  S  T  L  M  M  E  E  Q  S  A  T  P  I  P  S  S  R  P  M  T  P  L  S  W  T  *  I  P  I  R  L  L  T  S  S  N  L  M  L  E  M  W  L  W  L  L  V  V  E  T  G  D  V  L  E  F  L  R  I  E  R  S  T  R  V  A  L  R  Q  F  T  F  K  T  P  W  G  M  S  L  L  P  V  W  E  M  C  S  L  L  A  R  V  V  S  H  G  C  L  Y  L  R  G  K  V  S  S  Y  L  S  L  K  R  L  A  R  G  W  L  P  N  Q  L  Q  L  L  K  N  L  S  L  N  L  R  *  D  *  *  V  G  P  Y  F  S  L  F  R  G  M  P  F  L  F  L  C  V  P  F  Q  Y  L  C  T  R  Y  C  F  T  Y  I  F  L  S  G  K  K  K  D  *  V  E  I  N  Q  L  P  S  M  L  *  Y  F  I  A  T  E  F  K  D  T  L  S  M  S  L  L  T  *  F  K  M  S  F  W  L  *  Y  F  L  N  *  P  G  V  G  F  Q  I   </first_frame>
            <second_frame>  I  F  D  S  L  G  F  K  T  N  T  S  R  R  *  P  S  L  A  A  A  N  L  S  E  N  R  Q  N   : G  K  R  V  E  E  T  F  E  E  A  Q  C  A  *  A  L  D  A  *  *  T  W  R  C  F   : C  S  Q  A  F  F  W  S  T  *  I  K  G  M  F  A  I  G  Y  Y  P  E  E  Q  V  E  I  C  F  D  L  P  *  G  H  F  Y  L  D  A  T  P  S  Y  G  *  W  E  S  *  D  G  Q  D  L  P  C  W  F  H  G :   C  C  Y  Y  S  K  D  K  *  E  F  P  T  S  L  *  H  *  G  P  V  P  S  P  L  T  Q  R  *  G  S  Q   : V  Q  T  L  *  G  S  I  S  A  V  W  T  E  G  D  P  I  S  Q  H  L  *  W  K  N  N  P  L  P  R  S  P  H  Q  G  Q  *  H  H  *  A  G  L  R  F  Q  *  D  C  *  L  H  Q  I  *  C  W  K  C  G  Y  G  Y  W  W  *  K  Q  G  T  C  W  N  S  *  E  *  R  E  A  Q  G  *  L  *  D  S  S  H  S  R  L  P  G  A  *  V  C  Y  P  F  G  K  C  V  H  S  W  Q  G  *  *  A  M  G  V  S  T  *  G  E  R  Y  Q  V  I  Y  H  *  R  G  S  Q  E  D  G  C  P  I  S  Y  N  C  L  K  I  L  V  *  T  *  D  E  I  N  R  L  G  H  I  S  L  C  L  E  G  C  R  S  Y  F  C  V  F  H  F  N  I  C  V  L  G  T  V  L  H  T  F  F  C  Q  E  K  R  K  T  E  L  R  S  I  S  C  L  L  C  Y  S  I  L  L  R  L  S  L  R  T  P  C  P  *  V  Y  *  L  N  S  K  *  V  F  G  C  N  I  F  *  T  D  P  E  L  D  S  K  F  </second_frame>
            <third_frame>   S  S  T  R  *  G  L  R  Q  T  H  L  A  G  S  H  H  S  R  Q  L  I  C  R  K  T  A  K  M  :  A  R  G  L  K  K  H  L  K  R  L  N  A  P  K  H  W  M  L  D  K  L  G  G  A  F  :  A  P  K  P  S  S  G  P  H  K  S  R  E  C  L  P  L  V  I  I  L  R  N  R  L  K  Y  A  L  T  Y  R  E  V  I  S  I  L  M  Q  R  Q  V  M  V  D  G  K  V  R  T  D  K  T  Y  P  A  G  F  M   : D  V  V  T  I  P  K  T  N  E  S  F  R  L  L  Y  D  T  K  G  R  F  R  L  H  S  L  R  D  E  E  A  K  :  F  K  L  C  K  V  R  S  V  Q  F  G  Q  K  G  I  P  Y  L  N  T  Y  D  G  R  T  I  R  Y  P  D  P  L  I  K  A  N  D  T  I  K  L  D  L  D  S  N  K  I  V  D  F  I  K  F  D  V  G  N  V  V  M  V  T  G  G  R  N  R  G  R  V  G  I  L  K  N  R  E  K  H  K  G  S  F  E  T  V  H  I  Q  D  S  L  G  H  E  F  A  T  R  L  G  N  V  F  T  L  G  K  G  S  K  P  W  V  S  L  P  K  G  K  G  I  K  L  S  I  I  E  E  A  R  K  R  M  A  A  Q  S  A  T  T  A  *  K  S  *  F  E  L  E  M  R  L  I  G  W  A  I  F  L  F  V  *  R  D  A  V  L  I  F  V  C  S  I  S  I  F  V  Y  S  V  L  F  Y  I  H  F  F  V  R  K  K  E  R  L  S  *  D  Q  S  V  A  F  Y  V  I  V  F  Y  C  D  *  V  *  G  H  L  V  H  E  F  I  N  L  I  Q  N  E  F  L  V  V  I  F  F  K  L  T  R  S  W  I  P  N  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46628" stop="46699"/>
                    <exon start="47538" stop="47615"/>
                    <exon start="47710" stop="47890"/>
                    <exon start="48159" stop="48256"/>
                    <exon start="48346" stop="48780"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>861</number_coding_nucleotides>
                  <number_encoded_amino_acids>287</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLRQTHLAGSHHSRQLICRKTAKMARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIILRNRLKYALTYREVISILMQRQVMVDGKVRTDKTYPAGFMDVVTIPKTNESFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNVVMVTGGRNRGRVGILKNREKHKGSFETVHIQDSLGHEFATRLGNVFTLGKGSKPWVSLPKGKGIKLSIIEEARKRMAAQSATTA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48801" stop="49010"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DEINRLGHISLCLEGCRSYFCVFHFNICVLGTVLHTFFCQEKRKTELRSISCLLCYSILLRLSLRTPCP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="47465" e_stop="47466"/>
            <exon e_start="47538" e_stop="47615"/>
            <exon e_start="47710" e_stop="47890"/>
            <exon e_start="48159" e_stop="48256"/>
            <exon e_start="48346" e_stop="49086"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.270" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.924" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47465" e_stop="47466" e_length="2"/>
          </exon>
          <intron i_serial="1" don_prob="0.270" acc_prob="0.996">
            <gDNA_intron_boundary i_start="47467" i_stop="47537" i_length="71"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47538" e_stop="47615" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.978">
            <gDNA_intron_boundary i_start="47616" i_stop="47709" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47710" e_stop="47890" e_length="181"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.924">
            <gDNA_intron_boundary i_start="47891" i_stop="48158" i_length="268"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48159" e_stop="48256" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="48257" i_stop="48345" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="48346" e_stop="49086" e_length="741"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47465" stop="47466"/>
              <exon start="47538" stop="47615"/>
              <exon start="47710" stop="47890"/>
              <exon start="48159" stop="48245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47547" stop="47615"/>
              <exon start="47710" stop="47890"/>
              <exon start="48159" stop="48256"/>
              <exon start="48346" stop="48578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47547" stop="47615"/>
              <exon start="47710" stop="47890"/>
              <exon start="48159" stop="48256"/>
              <exon start="48346" stop="48373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47574" stop="47615"/>
              <exon start="47710" stop="47890"/>
              <exon start="48159" stop="48256"/>
              <exon start="48346" stop="48524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47598" stop="47615"/>
              <exon start="47710" stop="47890"/>
              <exon start="48159" stop="48256"/>
              <exon start="48346" stop="48529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47845" stop="47890"/>
              <exon start="48159" stop="48256"/>
              <exon start="48346" stop="48955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48195" stop="48256"/>
              <exon start="48346" stop="48947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48195" stop="48256"/>
              <exon start="48346" stop="48917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48348" stop="48947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48382" stop="48971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48383" stop="48978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48383" stop="48971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48481" stop="48947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265906" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48626" stop="49086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612038" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TG : GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT : GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCTTTGACTTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACGGACAAGACTTACCCTGCTGGTTTCATGG : ATGTTGTTACTATTCCAAAGACAAATGAGAGTTTCCGACTTCTTTATGACACTAAGGGCCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG : TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATTAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAATTTGATGTTGGAAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAAGACTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGGAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCCCAATCAGCTACAACTGCTTAAAAATCTTAGTTTGAACTTGAGATGAGATTAATAGGTTGGGCCATATTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTGTGTGTTCCATTTCAATATTTGTGTACTCGGTACTGTTTTACATACATTTTTTTGTCAGGAAAAAAGAAAGACTGAGTTGAGATCAATCAGTTGCCTTCTATGTTATAGTATTTTATTGCGACTGAGTTTAAGGACACCTTGTCCATGAGTTTATTAACTTAATTCAAAATGAGTTTTTGGTTGTAATATTTTTTAAACTGACCCGGAGTTGGATTCCAAATTTG</gDNA_template>
            <first_frame> W :   Q  E  G  *  R  N  I  *  R  G  S  M  R  L  S  I  G  C  L  I  N  L  E  V  L  L :   L  P  S  L  L  L  V  H  I  N  Q  G  N  V  C  H  W  L  L  S  *  G  T  G  *  N  M  L  *  L  T  V  R  S  F  L  S  *  C  N  A  K  L  W  L  M  G  K  L  G  R  T  R  L  T  L  L  V  S  W  :  M  L  L  L  F  Q  R  Q  M  R  V  S  D  F  F  M  T  L  R  A  G  S  V  S  T  H  S  E  M  R  K  P  S :   S  N  F  V  R  F  D  Q  C  S  L  D  R  R  G  S  H  I  S  T  L  M  M  E  E  Q  S  A  T  P  I  P  S  S  R  P  M  T  P  L  S  W  T  *  I  P  I  R  L  L  T  S  S  N  L  M  L  E  M  W  L  W  L  L  V  V  E  T  G  D  V  L  E  F  L  R  I  E  R  S  T  R  V  A  L  R  Q  F  T  F  K  T  P  W  G  M  S  L  L  P  V  W  E  M  C  S  L  L  A  R  V  V  S  H  G  C  L  Y  L  R  G  K  V  S  S  Y  L  S  L  K  R  L  A  R  G  W  L  P  N  Q  L  Q  L  L  K  N  L  S  L  N  L  R  *  D  *  *  V  G  P  Y  F  S  L  F  R  G  M  P  F  L  F  L  C  V  P  F  Q  Y  L  C  T  R  Y  C  F  T  Y  I  F  L  S  G  K  K  K  D  *  V  E  I  N  Q  L  P  S  M  L  *  Y  F  I  A  T  E  F  K  D  T  L  S  M  S  L  L  T  *  F  K  M  S  F  W  L  *  Y  F  L  N  *  P  G  V  G  F  Q  I   </first_frame>
            <second_frame>   : G  K  R  V  E  E  T  F  E  E  A  Q  C  A  *  A  L  D  A  *  *  T  W  R  C  F   : C  S  Q  A  F  F  W  S  T  *  I  K  G  M  F  A  I  G  Y  Y  P  E  E  Q  V  E  I  C  F  D  L  P  *  G  H  F  Y  L  D  A  T  P  S  Y  G  *  W  E  S  *  D  G  Q  D  L  P  C  W  F  H  G :   C  C  Y  Y  S  K  D  K  *  E  F  P  T  S  L  *  H  *  G  P  V  P  S  P  L  T  Q  R  *  G  S  Q   : V  Q  T  L  *  G  S  I  S  A  V  W  T  E  G  D  P  I  S  Q  H  L  *  W  K  N  N  P  L  P  R  S  P  H  Q  G  Q  *  H  H  *  A  G  L  R  F  Q  *  D  C  *  L  H  Q  I  *  C  W  K  C  G  Y  G  Y  W  W  *  K  Q  G  T  C  W  N  S  *  E  *  R  E  A  Q  G  *  L  *  D  S  S  H  S  R  L  P  G  A  *  V  C  Y  P  F  G  K  C  V  H  S  W  Q  G  *  *  A  M  G  V  S  T  *  G  E  R  Y  Q  V  I  Y  H  *  R  G  S  Q  E  D  G  C  P  I  S  Y  N  C  L  K  I  L  V  *  T  *  D  E  I  N  R  L  G  H  I  S  L  C  L  E  G  C  R  S  Y  F  C  V  F  H  F  N  I  C  V  L  G  T  V  L  H  T  F  F  C  Q  E  K  R  K  T  E  L  R  S  I  S  C  L  L  C  Y  S  I  L  L  R  L  S  L  R  T  P  C  P  *  V  Y  *  L  N  S  K  *  V  F  G  C  N  I  F  *  T  D  P  E  L  D  S  K  F  </second_frame>
            <third_frame>   :  A  R  G  L  K  K  H  L  K  R  L  N  A  P  K  H  W  M  L  D  K  L  G  G  A  F  :  A  P  K  P  S  S  G  P  H  K  S  R  E  C  L  P  L  V  I  I  L  R  N  R  L  K  Y  A  L  T  Y  R  E  V  I  S  I  L  M  Q  R  Q  V  M  V  D  G  K  V  R  T  D  K  T  Y  P  A  G  F  M   : D  V  V  T  I  P  K  T  N  E  S  F  R  L  L  Y  D  T  K  G  R  F  R  L  H  S  L  R  D  E  E  A  K  :  F  K  L  C  K  V  R  S  V  Q  F  G  Q  K  G  I  P  Y  L  N  T  Y  D  G  R  T  I  R  Y  P  D  P  L  I  K  A  N  D  T  I  K  L  D  L  D  S  N  K  I  V  D  F  I  K  F  D  V  G  N  V  V  M  V  T  G  G  R  N  R  G  R  V  G  I  L  K  N  R  E  K  H  K  G  S  F  E  T  V  H  I  Q  D  S  L  G  H  E  F  A  T  R  L  G  N  V  F  T  L  G  K  G  S  K  P  W  V  S  L  P  K  G  K  G  I  K  L  S  I  I  E  E  A  R  K  R  M  A  A  Q  S  A  T  T  A  *  K  S  *  F  E  L  E  M  R  L  I  G  W  A  I  F  L  F  V  *  R  D  A  V  L  I  F  V  C  S  I  S  I  F  V  Y  S  V  L  F  Y  I  H  F  F  V  R  K  K  E  R  L  S  *  D  Q  S  V  A  F  Y  V  I  V  F  Y  C  D  *  V  *  G  H  L  V  H  E  F  I  N  L  I  Q  N  E  F  L  V  V  I  F  F  K  L  T  R  S  W  I  P  N  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47538" stop="47615"/>
                    <exon start="47710" stop="47890"/>
                    <exon start="48159" stop="48256"/>
                    <exon start="48346" stop="48780"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>789</number_coding_nucleotides>
                  <number_encoded_amino_acids>263</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIILRNRLKYALTYREVISILMQRQVMVDGKVRTDKTYPAGFMDVVTIPKTNESFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNVVMVTGGRNRGRVGILKNREKHKGSFETVHIQDSLGHEFATRLGNVFTLGKGSKPWVSLPKGKGIKLSIIEEARKRMAAQSATTA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48801" stop="49010"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DEINRLGHISLCLEGCRSYFCVFHFNICVLGTVLHTFFCQEKRKTELRSISCLLCYSILLRLSLRTPCP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="49001" PGL_stop="48545"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49001" e_stop="48545"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="49001" e_stop="48545" e_length="457"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49001" stop="48545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609645" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGTGTCCTTAAACTCAGTCGCAATAAAATACTATAACATAGAAGGCAACTGATTGATCTCAACTCAGTCTTTCTTTTTTCCTGACAAAAAAATGTATGTAAAACAGTACCGAGTACACAAATATTGAAATGGAACACACAAAAATAAGAACGGCATCCCTCTAAACAAAGAGAAATATGGCCCAACCTATTAATCTCATCTCAAGTTCAAACTAAGATTTTTAAGCAGTTGTAGCTGATTGGGCAGCCATCCTCTTGCGAGCCTCTTCAATGATAGATAACTTGATACCTTTCCCCTTAGGTAGAGACACCCATGGCTTACTACCCTTGCCAAGAGTGAACACATTTCCCAAACGGGTAGCAAACTCATGCCCCAGGGAGTCTTGAATGTGAACTGTCTCAAAGCTACCCTTGTGCTTCTCTCTATTCTTAAGAATTCCAACACGTCCCCTGTTTC</gDNA_template>
            <first_frame> R  C  P  *  T  Q  S  Q  *  N  T  I  T  *  K  A  T  D  *  S  Q  L  S  L  S  F  F  L  T  K  K  C  M  *  N  S  T  E  Y  T  N  I  E  M  E  H  T  K  I  R  T  A  S  L  *  T  K  R  N  M  A  Q  P  I  N  L  I  S  S  S  N  *  D  F  *  A  V  V  A  D  W  A  A  I  L  L  R  A  S  S  M  I  D  N  L  I  P  F  P  L  G  R  D  T  H  G  L  L  P  L  P  R  V  N  T  F  P  K  R  V  A  N  S  C  P  R  E  S  *  M  *  T  V  S  K  L  P  L  C  F  S  L  F  L  R  I  P  T  R  P  L  F  </first_frame>
            <second_frame>  G  V  L  K  L  S  R  N  K  I  L  *  H  R  R  Q  L  I  D  L  N  S  V  F  L  F  S  *  Q  K  N  V  C  K  T  V  P  S  T  Q  I  L  K  W  N  T  Q  K  *  E  R  H  P  S  K  Q  R  E  I  W  P  N  L  L  I  S  S  Q  V  Q  T  K  I  F  K  Q  L  *  L  I  G  Q  P  S  S  C  E  P  L  Q  *  *  I  T  *  Y  L  S  P  *  V  E  T  P  M  A  Y  Y  P  C  Q  E  *  T  H  F  P  N  G  *  Q  T  H  A  P  G  S  L  E  C  E  L  S  Q  S  Y  P  C  A  S  L  Y  S  *  E  F  Q  H  V  P  C  F </second_frame>
            <third_frame>   V  S  L  N  S  V  A  I  K  Y  Y  N  I  E  G  N  *  L  I  S  T  Q  S  F  F  F  P  D  K  K  M  Y  V  K  Q  Y  R  V  H  K  Y  *  N  G  T  H  K  N  K  N  G  I  P  L  N  K  E  K  Y  G  P  T  Y  *  S  H  L  K  F  K  L  R  F  L  S  S  C  S  *  L  G  S  H  P  L  A  S  L  F  N  D  R  *  L  D  T  F  P  L  R  *  R  H  P  W  L  T  T  L  A  K  S  E  H  I  S  Q  T  G  S  K  L  M  P  Q  G  V  L  N  V  N  C  L  K  A  T  L  V  L  L  S  I  L  K  N  S  N  T  S  P  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0064G08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="49627" PGL_stop="52162"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49627" e_stop="49709"/>
            <exon e_start="50532" e_stop="50609"/>
            <exon e_start="50704" e_stop="50884"/>
            <exon e_start="51141" e_stop="51238"/>
            <exon e_start="51329" e_stop="52162"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.968" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49627" e_stop="49709" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="49710" i_stop="50531" i_length="822"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50532" e_stop="50609" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.978">
            <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50704" e_stop="50884" e_length="181"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.984">
            <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="51141" e_stop="51238" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.968">
            <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="0.999">
            <gDNA_exon_boundary e_start="51329" e_stop="52162" e_length="834"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49627" stop="49709"/>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="52162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49638" stop="49709"/>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49640" stop="49709"/>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49642" stop="49709"/>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49642" stop="49709"/>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49645" stop="49709"/>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49645" stop="49709"/>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49646" stop="49709"/>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49646" stop="49709"/>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49646" stop="49709"/>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49647" stop="49709"/>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49647" stop="49709"/>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49648" stop="49709"/>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49648" stop="49709"/>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49650" stop="49709"/>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49650" stop="49709"/>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49650" stop="49709"/>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51407"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49650" stop="49709"/>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49652" stop="49709"/>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49652" stop="49709"/>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49652" stop="49709"/>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49652" stop="49709"/>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49653" stop="49709"/>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49658" stop="49709"/>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49658" stop="49709"/>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49664" stop="49709"/>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49665" stop="49709"/>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49665" stop="49709"/>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49669" stop="49709"/>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49673" stop="49709"/>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49678" stop="49709"/>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50569" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50569" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50569" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50569" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50591" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50723" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50737" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50744" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50761" stop="50884"/>
              <exon start="51141" stop="51182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50795" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51160" stop="51238"/>
              <exon start="51329" stop="51498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51334" stop="51815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51337" stop="52115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333583" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51428" stop="52025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51442" stop="52090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51539" stop="51964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51579" stop="51970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51604" stop="51931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51604" stop="51931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51605" stop="51931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51612" stop="52011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51637" stop="52011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219868" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATCTCATTAGGGTTGAAGACACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG : GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT : GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG : ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG : TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCACCTCTTATTTTTGGTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCTTTTTTTGTCAGGAAAAAACAATGACTGAGTTTAGACCAATCAGTTGCCTTTTTATGTGATGGTATTTCATTGTAAGAGTTTAAGGACCTTGTCGATGAGTTTATTCACTTGTTTCAAAATGAGTTTTTGGTTGTAATATCTTCAAATCCAACCTGCTGTTGTATTCCAAAGTTGGTGTAGTTCACTAAACCTGATTCGTAATTTCATTTTCATAAACTTCAAATGATGTGGGTTCTTTTGTCCTACTAATTGTACAATCAAACATAATT</gDNA_template>
            <first_frame> H  L  I  R  V  E  D  T  R  L  S  P  V  D  V  T  L  G  S  *  S  V  G  K  P  P  K  W :   Q  E  G  *  R  N  I  *  R  G  S  M  R  L  S  I  G  C  L  I  N  L  E  V  L  L :   L  P  S  L  L  L  V  H  I  N  Q  G  N  V  C  H  W  L  L  S  *  G  T  G  *  N  M  R  *  R  T  V  R  S  F  L  S  *  C  N  A  K  L  W  L  M  G  K  L  E  Q  I  R  L  T  L  L  V  S  W  :  T  L  L  L  F  Q  R  R  M  R  A  S  D  F  F  M  T  L  R  V  G  S  V  Y  T  H  S  E  M  R  K  P  S :   S  N  F  A  R  F  D  Q  C  S  L  D  R  R  V  S  H  I  S  T  R  M  M  E  E  Q  S  A  T  P  I  P  S  S  R  P  M  T  P  S  S  W  T  *  I  P  I  R  L  L  T  S  S  S  L  M  L  V  M  W  L  W  *  L  V  V  E  T  G  D  V  L  E  F  L  R  T  G  R  S  T  R  V  A  L  R  Q  F  T  F  R  I  P  W  G  M  S  L  L  P  V  W  E  M  C  S  L  L  V  K  V  V  S  H  G  S  L  Y  L  R  V  K  V  S  S  Y  L  S  L  K  R  L  A  R  G  W  L  L  N  Q  L  Q  L  L  K  N  D  R  L  N  L  R  *  I  *  *  V  A  L  F  F  S  L  F  R  G  L  P  P  L  I  F  G  V  A  F  Q  H  P  M  Y  S  V  L  F  Y  I  P  F  F  V  R  K  K  Q  *  L  S  L  D  Q  S  V  A  F  L  C  D  G  I  S  L  *  E  F  K  D  L  V  D  E  F  I  H  L  F  Q  N  E  F  L  V  V  I  S  S  N  P  T  C  C  C  I  P  K  L  V  *  F  T  K  P  D  S  *  F  H  F  H  K  L  Q  M  M  W  V  L  L  S  Y  *  L  Y  N  Q  T  *   </first_frame>
            <second_frame>  I  S  L  G  L  K  T  H  A  S  R  R  *  T  S  L  S  A  A  N  L  S  E  N  R  Q  N   : G  K  R  V  E  E  T  F  K  E  A  Q  C  A  *  A  L  D  A  *  *  T  W  R  C  F   : C  S  Q  A  F  F  W  S  T  *  I  K  G  M  F  A  I  G  Y  Y  P  E  E  Q  V  E  I  C  V  D  V  P  *  G  H  F  Y  L  D  A  T  P  S  Y  G  *  W  E  S  *  N  R  *  D  L  P  C  W  F  H  G :   R  C  Y  Y  S  K  D  E  *  E  L  P  T  S  L  *  H  *  G  S  V  P  S  T  L  T  Q  R  *  G  S  Q   : V  Q  T  L  Q  G  S  I  S  A  V  W  T  E  G  Y  P  I  S  Q  H  V  *  W  K  N  N  P  L  P  R  S  P  H  Q  G  Q  *  H  H  Q  A  G  L  R  F  Q  *  D  C  *  L  H  Q  V  *  C  W  *  C  G  Y  G  D  W  W  *  K  Q  G  T  C  W  N  S  *  E  Q  G  E  A  Q  G  *  L  *  D  S  S  H  S  G  F  P  G  A  *  V  C  Y  P  F  G  K  C  V  H  S  W  *  R  *  *  A  M  G  L  S  T  *  G  *  R  Y  Q  V  I  Y  H  *  R  G  S  Q  E  D  G  C  S  I  S  Y  N  C  L  K  M  I  G  *  T  *  D  E  F  N  R  L  R  Y  F  S  L  C  L  E  G  C  H  L  L  F  L  V  L  H  F  N  I  L  C  T  R  Y  C  F  T  Y  L  F  L  S  G  K  N  N  D  *  V  *  T  N  Q  L  P  F  Y  V  M  V  F  H  C  K  S  L  R  T  L  S  M  S  L  F  T  C  F  K  M  S  F  W  L  *  Y  L  Q  I  Q  P  A  V  V  F  Q  S  W  C  S  S  L  N  L  I  R  N  F  I  F  I  N  F  K  *  C  G  F  F  C  P  T  N  C  T  I  K  H  N  </second_frame>
            <third_frame>   S  H  *  G  *  R  H  T  P  L  A  G  R  R  H  S  R  Q  L  I  C  R  K  T  A  K  M  :  A  R  G  L  K  K  H  L  K  R  L  N  A  P  K  H  W  M  L  D  K  L  G  G  A  F  :  A  P  K  P  S  S  G  P  H  K  S  R  E  C  L  P  L  V  I  I  L  R  N  R  L  K  Y  A  L  T  Y  R  E  V  I  S  I  L  M  Q  R  Q  V  M  V  D  G  K  V  R  T  D  K  T  Y  P  A  G  F  M   : D  V  V  T  I  P  K  T  N  E  S  F  R  L  L  Y  D  T  K  G  R  F  R  L  H  S  L  R  D  E  E  A  K  :  F  K  L  C  K  V  R  S  V  Q  F  G  Q  K  G  I  P  Y  L  N  T  Y  D  G  R  T  I  R  Y  P  D  P  L  I  K  A  N  D  T  I  K  L  D  L  D  S  N  K  I  V  D  F  I  K  F  D  V  G  N  V  V  M  V  T  G  G  R  N  R  G  R  V  G  I  L  K  N  R  E  K  H  K  G  S  F  E  T  V  H  I  Q  D  S  L  G  H  E  F  A  T  R  L  G  N  V  F  T  L  G  K  G  S  K  P  W  V  S  L  P  K  G  K  G  I  K  L  S  I  I  E  E  A  R  K  R  M  A  A  Q  S  A  T  T  A  *  K  *  *  V  E  L  E  M  N  L  I  G  C  A  I  F  L  F  V  *  R  V  A  T  S  Y  F  W  C  C  I  S  T  S  Y  V  L  G  I  V  L  H  T  F  F  C  Q  E  K  T  M  T  E  F  R  P  I  S  C  L  F  M  *  W  Y  F  I  V  R  V  *  G  P  C  R  *  V  Y  S  L  V  S  K  *  V  F  G  C  N  I  F  K  S  N  L  L  L  Y  S  K  V  G  V  V  H  *  T  *  F  V  I  S  F  S  *  T  S  N  D  V  G  S  F  V  L  L  I  V  Q  S  N  I  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49644" stop="49709"/>
                    <exon start="50532" stop="50609"/>
                    <exon start="50704" stop="50884"/>
                    <exon start="51141" stop="51238"/>
                    <exon start="51329" stop="51763"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>855</number_coding_nucleotides>
                  <number_encoded_amino_acids>285</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RHTPLAGRRHSRQLICRKTAKMARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIILRNRLKYALTYREVISILMQRQVMVDGKVRTDKTYPAGFMDVVTIPKTNESFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNVVMVTGGRNRGRVGILKNREKHKGSFETVHIQDSLGHEFATRLGNVFTLGKGSKPWVSLPKGKGIKLSIIEEARKRMAAQSATTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="49663" e_stop="49709"/>
            <exon e_start="50530" e_stop="50609"/>
            <exon e_start="50704" e_stop="50884"/>
            <exon e_start="51141" e_stop="51238"/>
            <exon e_start="51329" e_stop="52115"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="0.957"/>
          <exon-intron don_prob="0.984" acc_prob="0.978" e_score="0.923"/>
          <exon-intron don_prob="0.998" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.968" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="49663" e_stop="49709" e_length="47"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49710" i_stop="50529" i_length="820"/>
          </intron>
          <exon e_serial="2" e_score="0.923">
            <gDNA_exon_boundary e_start="50530" e_stop="50609" e_length="80"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.978">
            <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50704" e_stop="50884" e_length="181"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.984">
            <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="51141" e_stop="51238" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.968">
            <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="0.991">
            <gDNA_exon_boundary e_start="51329" e_stop="52115" e_length="787"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49663" stop="49709"/>
              <exon start="50530" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50569" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50569" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50569" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50569" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50591" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50723" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50737" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50744" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50761" stop="50884"/>
              <exon start="51141" stop="51182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50795" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51160" stop="51238"/>
              <exon start="51329" stop="51498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51334" stop="51815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51337" stop="52115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333583" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51428" stop="52025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51442" stop="52090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51539" stop="51964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51579" stop="51970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51604" stop="51931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51604" stop="51931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51605" stop="51931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51612" stop="52011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51637" stop="52011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219868" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG : AGGCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT : GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG : ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG : TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCACCTCTTATTTTTGGTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCTTTTTTTGTCAGGAAAAAACAATGACTGAGTTTAGACCAATCAGTTGCCTTTTTATGTGATGGTATTTCATTGTAAGAGTTTAAGGACCTTGTCGATGAGTTTATTCACTTGTTTCAAAATGAGTTTTTGGTTGTAATATCTTCAAATCCAACCTGCTGTTGTATTCCAAAGTTGGTGTAGTTCACTAAACCTGATTCGTAATTTCATTTTCATAAACTTCAA</gDNA_template>
            <first_frame> V  D  V  T  L  G  S  *  S  V  G  K  P  P  K  * :   G  K  R  V  E  E  T  F  K  E  A  Q  C  A  *  A  L  D  A  *  *  T  W  R  C  F   : C  S  Q  A  F  F  W  S  T  *  I  K  G  M  F  A  I  G  Y  Y  P  E  E  Q  V  E  I  C  V  D  V  P  *  G  H  F  Y  L  D  A  T  P  S  Y  G  *  W  E  S  *  N  R  *  D  L  P  C  W  F  H  G :   R  C  Y  Y  S  K  D  E  *  E  L  P  T  S  L  *  H  *  G  S  V  P  S  T  L  T  Q  R  *  G  S  Q   : V  Q  T  L  Q  G  S  I  S  A  V  W  T  E  G  Y  P  I  S  Q  H  V  *  W  K  N  N  P  L  P  R  S  P  H  Q  G  Q  *  H  H  Q  A  G  L  R  F  Q  *  D  C  *  L  H  Q  V  *  C  W  *  C  G  Y  G  D  W  W  *  K  Q  G  T  C  W  N  S  *  E  Q  G  E  A  Q  G  *  L  *  D  S  S  H  S  G  F  P  G  A  *  V  C  Y  P  F  G  K  C  V  H  S  W  *  R  *  *  A  M  G  L  S  T  *  G  *  R  Y  Q  V  I  Y  H  *  R  G  S  Q  E  D  G  C  S  I  S  Y  N  C  L  K  M  I  G  *  T  *  D  E  F  N  R  L  R  Y  F  S  L  C  L  E  G  C  H  L  L  F  L  V  L  H  F  N  I  L  C  T  R  Y  C  F  T  Y  L  F  L  S  G  K  N  N  D  *  V  *  T  N  Q  L  P  F  Y  V  M  V  F  H  C  K  S  L  R  T  L  S  M  S  L  F  T  C  F  K  M  S  F  W  L  *  Y  L  Q  I  Q  P  A  V  V  F  Q  S  W  C  S  S  L  N  L  I  R  N  F  I  F  I  N  F   </first_frame>
            <second_frame>  *  T  S  L  S  A  A  N  L  S  E  N  R  Q  N   : E  A  R  G  L  K  K  H  L  K  R  L  N  A  P  K  H  W  M  L  D  K  L  G  G  A  F  :  A  P  K  P  S  S  G  P  H  K  S  R  E  C  L  P  L  V  I  I  L  R  N  R  L  K  Y  A  L  T  Y  R  E  V  I  S  I  L  M  Q  R  Q  V  M  V  D  G  K  V  R  T  D  K  T  Y  P  A  G  F  M   : D  V  V  T  I  P  K  T  N  E  S  F  R  L  L  Y  D  T  K  G  R  F  R  L  H  S  L  R  D  E  E  A  K  :  F  K  L  C  K  V  R  S  V  Q  F  G  Q  K  G  I  P  Y  L  N  T  Y  D  G  R  T  I  R  Y  P  D  P  L  I  K  A  N  D  T  I  K  L  D  L  D  S  N  K  I  V  D  F  I  K  F  D  V  G  N  V  V  M  V  T  G  G  R  N  R  G  R  V  G  I  L  K  N  R  E  K  H  K  G  S  F  E  T  V  H  I  Q  D  S  L  G  H  E  F  A  T  R  L  G  N  V  F  T  L  G  K  G  S  K  P  W  V  S  L  P  K  G  K  G  I  K  L  S  I  I  E  E  A  R  K  R  M  A  A  Q  S  A  T  T  A  *  K  *  *  V  E  L  E  M  N  L  I  G  C  A  I  F  L  F  V  *  R  V  A  T  S  Y  F  W  C  C  I  S  T  S  Y  V  L  G  I  V  L  H  T  F  F  C  Q  E  K  T  M  T  E  F  R  P  I  S  C  L  F  M  *  W  Y  F  I  V  R  V  *  G  P  C  R  *  V  Y  S  L  V  S  K  *  V  F  G  C  N  I  F  K  S  N  L  L  L  Y  S  K  V  G  V  V  H  *  T  *  F  V  I  S  F  S  *  T  S  </second_frame>
            <third_frame>   R  R  H  S  R  Q  L  I  C  R  K  T  A  K  M  :  R  Q  E  G  *  R  N  I  *  R  G  S  M  R  L  S  I  G  C  L  I  N  L  E  V  L  L :   L  P  S  L  L  L  V  H  I  N  Q  G  N  V  C  H  W  L  L  S  *  G  T  G  *  N  M  R  *  R  T  V  R  S  F  L  S  *  C  N  A  K  L  W  L  M  G  K  L  E  Q  I  R  L  T  L  L  V  S  W  :  T  L  L  L  F  Q  R  R  M  R  A  S  D  F  F  M  T  L  R  V  G  S  V  Y  T  H  S  E  M  R  K  P  S :   S  N  F  A  R  F  D  Q  C  S  L  D  R  R  V  S  H  I  S  T  R  M  M  E  E  Q  S  A  T  P  I  P  S  S  R  P  M  T  P  S  S  W  T  *  I  P  I  R  L  L  T  S  S  S  L  M  L  V  M  W  L  W  *  L  V  V  E  T  G  D  V  L  E  F  L  R  T  G  R  S  T  R  V  A  L  R  Q  F  T  F  R  I  P  W  G  M  S  L  L  P  V  W  E  M  C  S  L  L  V  K  V  V  S  H  G  S  L  Y  L  R  V  K  V  S  S  Y  L  S  L  K  R  L  A  R  G  W  L  L  N  Q  L  Q  L  L  K  N  D  R  L  N  L  R  *  I  *  *  V  A  L  F  F  S  L  F  R  G  L  P  P  L  I  F  G  V  A  F  Q  H  P  M  Y  S  V  L  F  Y  I  P  F  F  V  R  K  K  Q  *  L  S  L  D  Q  S  V  A  F  L  C  D  G  I  S  L  *  E  F  K  D  L  V  D  E  F  I  H  L  F  Q  N  E  F  L  V  V  I  S  S  N  P  T  C  C  C  I  P  K  L  V  *  F  T  K  P  D  S  *  F  H  F  H  K  L  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49667" stop="49709"/>
                    <exon start="50530" stop="50609"/>
                    <exon start="50704" stop="50884"/>
                    <exon start="51141" stop="51238"/>
                    <exon start="51329" stop="51763"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSLSAANLSENRQNEARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIILRNRLKYALTYREVISILMQRQVMVDGKVRTDKTYPAGFMDVVTIPKTNESFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNVVMVTGGRNRGRVGILKNREKHKGSFETVHIQDSLGHEFATRLGNVFTLGKGSKPWVSLPKGKGIKLSIIEEARKRMAAQSATTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="49645" e_stop="49709"/>
            <exon e_start="49939" e_stop="49961"/>
            <exon e_start="50532" e_stop="50609"/>
            <exon e_start="50704" e_stop="50884"/>
            <exon e_start="51141" e_stop="51238"/>
            <exon e_start="51329" e_stop="52115"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="0.969"/>
          <exon-intron don_prob="0.059" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.968" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="49645" e_stop="49709" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="49710" i_stop="49938" i_length="229"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49939" e_stop="49961" e_length="23"/>
          </exon>
          <intron i_serial="2" don_prob="0.059" acc_prob="0.996">
            <gDNA_intron_boundary i_start="49962" i_stop="50531" i_length="570"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50532" e_stop="50609" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.978">
            <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="50704" e_stop="50884" e_length="181"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.984">
            <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="51141" e_stop="51238" e_length="98"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.968">
            <gDNA_intron_boundary i_start="51239" i_stop="51328" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="0.991">
            <gDNA_exon_boundary e_start="51329" e_stop="52115" e_length="787"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49645" stop="49709"/>
              <exon start="49939" stop="49961"/>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270181" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50569" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50569" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50569" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50569" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50591" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50723" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50737" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50744" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50761" stop="50884"/>
              <exon start="51141" stop="51182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50795" stop="50884"/>
              <exon start="51141" stop="51238"/>
              <exon start="51329" stop="51817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51160" stop="51238"/>
              <exon start="51329" stop="51498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51334" stop="51815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51337" stop="52115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333583" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51428" stop="52025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51442" stop="52090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51539" stop="51964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51579" stop="51970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51604" stop="51931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51604" stop="51931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51605" stop="51931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51612" stop="52011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51637" stop="52011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219868" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG : TGGTGCTGGTTAATATCGTATGT : GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT : GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG : ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAG : TTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCACCTCTTATTTTTGGTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCTTTTTTTGTCAGGAAAAAACAATGACTGAGTTTAGACCAATCAGTTGCCTTTTTATGTGATGGTATTTCATTGTAAGAGTTTAAGGACCTTGTCGATGAGTTTATTCACTTGTTTCAAAATGAGTTTTTGGTTGTAATATCTTCAAATCCAACCTGCTGTTGTATTCCAAAGTTGGTGTAGTTCACTAAACCTGATTCGTAATTTCATTTTCATAAACTTCAA</gDNA_template>
            <first_frame> D  T  R  L  S  P  V  D  V  T  L  G  S  *  S  V  G  K  P  P  K  C :   G  A  G  *  Y  R  M   : C  K  R  V  E  E  T  F  K  E  A  Q  C  A  *  A  L  D  A  *  *  T  W  R  C  F   : C  S  Q  A  F  F  W  S  T  *  I  K  G  M  F  A  I  G  Y  Y  P  E  E  Q  V  E  I  C  V  D  V  P  *  G  H  F  Y  L  D  A  T  P  S  Y  G  *  W  E  S  *  N  R  *  D  L  P  C  W  F  H  G :   R  C  Y  Y  S  K  D  E  *  E  L  P  T  S  L  *  H  *  G  S  V  P  S  T  L  T  Q  R  *  G  S  Q   : V  Q  T  L  Q  G  S  I  S  A  V  W  T  E  G  Y  P  I  S  Q  H  V  *  W  K  N  N  P  L  P  R  S  P  H  Q  G  Q  *  H  H  Q  A  G  L  R  F  Q  *  D  C  *  L  H  Q  V  *  C  W  *  C  G  Y  G  D  W  W  *  K  Q  G  T  C  W  N  S  *  E  Q  G  E  A  Q  G  *  L  *  D  S  S  H  S  G  F  P  G  A  *  V  C  Y  P  F  G  K  C  V  H  S  W  *  R  *  *  A  M  G  L  S  T  *  G  *  R  Y  Q  V  I  Y  H  *  R  G  S  Q  E  D  G  C  S  I  S  Y  N  C  L  K  M  I  G  *  T  *  D  E  F  N  R  L  R  Y  F  S  L  C  L  E  G  C  H  L  L  F  L  V  L  H  F  N  I  L  C  T  R  Y  C  F  T  Y  L  F  L  S  G  K  N  N  D  *  V  *  T  N  Q  L  P  F  Y  V  M  V  F  H  C  K  S  L  R  T  L  S  M  S  L  F  T  C  F  K  M  S  F  W  L  *  Y  L  Q  I  Q  P  A  V  V  F  Q  S  W  C  S  S  L  N  L  I  R  N  F  I  F  I  N  F   </first_frame>
            <second_frame>  T  H  A  S  R  R  *  T  S  L  S  A  A  N  L  S  E  N  R  Q  N   : V  V  L  V  N  I  V  C  :  A  R  G  L  K  K  H  L  K  R  L  N  A  P  K  H  W  M  L  D  K  L  G  G  A  F  :  A  P  K  P  S  S  G  P  H  K  S  R  E  C  L  P  L  V  I  I  L  R  N  R  L  K  Y  A  L  T  Y  R  E  V  I  S  I  L  M  Q  R  Q  V  M  V  D  G  K  V  R  T  D  K  T  Y  P  A  G  F  M   : D  V  V  T  I  P  K  T  N  E  S  F  R  L  L  Y  D  T  K  G  R  F  R  L  H  S  L  R  D  E  E  A  K  :  F  K  L  C  K  V  R  S  V  Q  F  G  Q  K  G  I  P  Y  L  N  T  Y  D  G  R  T  I  R  Y  P  D  P  L  I  K  A  N  D  T  I  K  L  D  L  D  S  N  K  I  V  D  F  I  K  F  D  V  G  N  V  V  M  V  T  G  G  R  N  R  G  R  V  G  I  L  K  N  R  E  K  H  K  G  S  F  E  T  V  H  I  Q  D  S  L  G  H  E  F  A  T  R  L  G  N  V  F  T  L  G  K  G  S  K  P  W  V  S  L  P  K  G  K  G  I  K  L  S  I  I  E  E  A  R  K  R  M  A  A  Q  S  A  T  T  A  *  K  *  *  V  E  L  E  M  N  L  I  G  C  A  I  F  L  F  V  *  R  V  A  T  S  Y  F  W  C  C  I  S  T  S  Y  V  L  G  I  V  L  H  T  F  F  C  Q  E  K  T  M  T  E  F  R  P  I  S  C  L  F  M  *  W  Y  F  I  V  R  V  *  G  P  C  R  *  V  Y  S  L  V  S  K  *  V  F  G  C  N  I  F  K  S  N  L  L  L  Y  S  K  V  G  V  V  H  *  T  *  F  V  I  S  F  S  *  T  S  </second_frame>
            <third_frame>   H  T  P  L  A  G  R  R  H  S  R  Q  L  I  C  R  K  T  A  K  M  :  W  C  W  L  I  S  Y  V :   Q  E  G  *  R  N  I  *  R  G  S  M  R  L  S  I  G  C  L  I  N  L  E  V  L  L :   L  P  S  L  L  L  V  H  I  N  Q  G  N  V  C  H  W  L  L  S  *  G  T  G  *  N  M  R  *  R  T  V  R  S  F  L  S  *  C  N  A  K  L  W  L  M  G  K  L  E  Q  I  R  L  T  L  L  V  S  W  :  T  L  L  L  F  Q  R  R  M  R  A  S  D  F  F  M  T  L  R  V  G  S  V  Y  T  H  S  E  M  R  K  P  S :   S  N  F  A  R  F  D  Q  C  S  L  D  R  R  V  S  H  I  S  T  R  M  M  E  E  Q  S  A  T  P  I  P  S  S  R  P  M  T  P  S  S  W  T  *  I  P  I  R  L  L  T  S  S  S  L  M  L  V  M  W  L  W  *  L  V  V  E  T  G  D  V  L  E  F  L  R  T  G  R  S  T  R  V  A  L  R  Q  F  T  F  R  I  P  W  G  M  S  L  L  P  V  W  E  M  C  S  L  L  V  K  V  V  S  H  G  S  L  Y  L  R  V  K  V  S  S  Y  L  S  L  K  R  L  A  R  G  W  L  L  N  Q  L  Q  L  L  K  N  D  R  L  N  L  R  *  I  *  *  V  A  L  F  F  S  L  F  R  G  L  P  P  L  I  F  G  V  A  F  Q  H  P  M  Y  S  V  L  F  Y  I  P  F  F  V  R  K  K  Q  *  L  S  L  D  Q  S  V  A  F  L  C  D  G  I  S  L  *  E  F  K  D  L  V  D  E  F  I  H  L  F  Q  N  E  F  L  V  V  I  S  S  N  P  T  C  C  C  I  P  K  L  V  *  F  T  K  P  D  S  *  F  H  F  H  K  L  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49667" stop="49709"/>
                    <exon start="49939" stop="49961"/>
                    <exon start="50532" stop="50609"/>
                    <exon start="50704" stop="50884"/>
                    <exon start="51141" stop="51238"/>
                    <exon start="51329" stop="51763"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>855</number_coding_nucleotides>
                  <number_encoded_amino_acids>285</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSLSAANLSENRQNVVLVNIVCARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIILRNRLKYALTYREVISILMQRQVMVDGKVRTDKTYPAGFMDVVTIPKTNESFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNVVMVTGGRNRGRVGILKNREKHKGSFETVHIQDSLGHEFATRLGNVFTLGKGSKPWVSLPKGKGIKLSIIEEARKRMAAQSATTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="49646" e_stop="49709"/>
            <exon e_start="50532" e_stop="50609"/>
            <exon e_start="50704" e_stop="50884"/>
            <exon e_start="51141" e_stop="52115"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.978" e_score="0.987"/>
          <exon-intron don_prob="0.998" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49646" e_stop="49709" e_length="64"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="49710" i_stop="50531" i_length="822"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="50532" e_stop="50609" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.978">
            <gDNA_intron_boundary i_start="50610" i_stop="50703" i_length="94"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50704" e_stop="50884" e_length="181"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.984">
            <gDNA_intron_boundary i_start="50885" i_stop="51140" i_length="256"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="51141" e_stop="52115" e_length="975"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49646" stop="49709"/>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49648" stop="49709"/>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49648" stop="49709"/>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49652" stop="49709"/>
              <exon start="50532" stop="50609"/>
              <exon start="50704" stop="50884"/>
              <exon start="51141" stop="51194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50761" stop="50884"/>
              <exon start="51141" stop="51182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51334" stop="51815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251542" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51337" stop="52115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333583" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51428" stop="52025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51442" stop="52090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51539" stop="51964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51579" stop="51970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51604" stop="51931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51604" stop="51931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51605" stop="51931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51612" stop="52011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51637" stop="52011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219868" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACACACGCCTCTCGCCGGTAGACGTCACTCTCGGCAGCTAATCTGTCGGAAAACCGCCAAAATG : GCAAGAGGGTTGAAGAAACATTTAAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT : GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG : ACGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTACACTCACTCAGAGATGAGGAAGCCAAGGTTTGAACCTGTTTCCTGCTTCTTCTTTGTTCCGGTTTGCTTTGGATGCTGTGCTGTTAAAGTAGTGACCTTGTTTTCTGCTCTCTGCAGTTCAAACTTTGCAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGTATCCCATATCTCAACACGTATGATGGAAGAACAATCCGCTACCCCGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTGACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTTGCTACCCGTTTGGGAAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTCTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAAAAATGATAGGTTGAACTTGAGATGAATTTAATAGGTTGCGCTATTTTTCTCTTTGTTTAGAGGGTTGCCACCTCTTATTTTTGGTGTTGCATTTCAACATCCTATGTACTCGGTATTGTTTTACATACCTTTTTTTGTCAGGAAAAAACAATGACTGAGTTTAGACCAATCAGTTGCCTTTTTATGTGATGGTATTTCATTGTAAGAGTTTAAGGACCTTGTCGATGAGTTTATTCACTTGTTTCAAAATGAGTTTTTGGTTGTAATATCTTCAAATCCAACCTGCTGTTGTATTCCAAAGTTGGTGTAGTTCACTAAACCTGATTCGTAATTTCATTTTCATAAACTTCAA</gDNA_template>
            <first_frame> T  H  A  S  R  R  *  T  S  L  S  A  A  N  L  S  E  N  R  Q  N   : G  K  R  V  E  E  T  F  K  E  A  Q  C  A  *  A  L  D  A  *  *  T  W  R  C  F   : C  S  Q  A  F  F  W  S  T  *  I  K  G  M  F  A  I  G  Y  Y  P  E  E  Q  V  E  I  C  V  D  V  P  *  G  H  F  Y  L  D  A  T  P  S  Y  G  *  W  E  S  *  N  R  *  D  L  P  C  W  F  H  G :   R  C  Y  Y  S  K  D  E  *  E  L  P  T  S  L  *  H  *  G  S  V  P  S  T  L  T  Q  R  *  G  S  Q  G  L  N  L  F  P  A  S  S  L  F  R  F  A  L  D  A  V  L  L  K  *  *  P  C  F  L  L  S  A  V  Q  T  L  Q  G  S  I  S  A  V  W  T  E  G  Y  P  I  S  Q  H  V  *  W  K  N  N  P  L  P  R  S  P  H  Q  G  Q  *  H  H  Q  A  G  L  R  F  Q  *  D  C  *  L  H  Q  V  *  C  W  *  C  G  Y  G  D  W  W  *  K  Q  G  T  C  W  N  S  *  E  Q  G  E  A  Q  G  *  L  *  D  S  S  H  S  G  F  P  G  A  *  V  C  Y  P  F  G  K  C  V  H  S  W  *  R  *  *  A  M  G  L  S  T  *  G  *  R  Y  Q  V  I  Y  H  *  R  G  S  Q  E  D  G  C  S  I  S  Y  N  C  L  K  M  I  G  *  T  *  D  E  F  N  R  L  R  Y  F  S  L  C  L  E  G  C  H  L  L  F  L  V  L  H  F  N  I  L  C  T  R  Y  C  F  T  Y  L  F  L  S  G  K  N  N  D  *  V  *  T  N  Q  L  P  F  Y  V  M  V  F  H  C  K  S  L  R  T  L  S  M  S  L  F  T  C  F  K  M  S  F  W  L  *  Y  L  Q  I  Q  P  A  V  V  F  Q  S  W  C  S  S  L  N  L  I  R  N  F  I  F  I  N  F   </first_frame>
            <second_frame>  H  T  P  L  A  G  R  R  H  S  R  Q  L  I  C  R  K  T  A  K  M  :  A  R  G  L  K  K  H  L  K  R  L  N  A  P  K  H  W  M  L  D  K  L  G  G  A  F  :  A  P  K  P  S  S  G  P  H  K  S  R  E  C  L  P  L  V  I  I  L  R  N  R  L  K  Y  A  L  T  Y  R  E  V  I  S  I  L  M  Q  R  Q  V  M  V  D  G  K  V  R  T  D  K  T  Y  P  A  G  F  M   : D  V  V  T  I  P  K  T  N  E  S  F  R  L  L  Y  D  T  K  G  R  F  R  L  H  S  L  R  D  E  E  A  K  V  *  T  C  F  L  L  L  L  C  S  G  L  L  W  M  L  C  C  *  S  S  D  L  V  F  C  S  L  Q  F  K  L  C  K  V  R  S  V  Q  F  G  Q  K  G  I  P  Y  L  N  T  Y  D  G  R  T  I  R  Y  P  D  P  L  I  K  A  N  D  T  I  K  L  D  L  D  S  N  K  I  V  D  F  I  K  F  D  V  G  N  V  V  M  V  T  G  G  R  N  R  G  R  V  G  I  L  K  N  R  E  K  H  K  G  S  F  E  T  V  H  I  Q  D  S  L  G  H  E  F  A  T  R  L  G  N  V  F  T  L  G  K  G  S  K  P  W  V  S  L  P  K  G  K  G  I  K  L  S  I  I  E  E  A  R  K  R  M  A  A  Q  S  A  T  T  A  *  K  *  *  V  E  L  E  M  N  L  I  G  C  A  I  F  L  F  V  *  R  V  A  T  S  Y  F  W  C  C  I  S  T  S  Y  V  L  G  I  V  L  H  T  F  F  C  Q  E  K  T  M  T  E  F  R  P  I  S  C  L  F  M  *  W  Y  F  I  V  R  V  *  G  P  C  R  *  V  Y  S  L  V  S  K  *  V  F  G  C  N  I  F  K  S  N  L  L  L  Y  S  K  V  G  V  V  H  *  T  *  F  V  I  S  F  S  *  T  S  </second_frame>
            <third_frame>   T  R  L  S  P  V  D  V  T  L  G  S  *  S  V  G  K  P  P  K  W :   Q  E  G  *  R  N  I  *  R  G  S  M  R  L  S  I  G  C  L  I  N  L  E  V  L  L :   L  P  S  L  L  L  V  H  I  N  Q  G  N  V  C  H  W  L  L  S  *  G  T  G  *  N  M  R  *  R  T  V  R  S  F  L  S  *  C  N  A  K  L  W  L  M  G  K  L  E  Q  I  R  L  T  L  L  V  S  W  :  T  L  L  L  F  Q  R  R  M  R  A  S  D  F  F  M  T  L  R  V  G  S  V  Y  T  H  S  E  M  R  K  P  R  F  E  P  V  S  C  F  F  F  V  P  V  C  F  G  C  C  A  V  K  V  V  T  L  F  S  A  L  C  S  S  N  F  A  R  F  D  Q  C  S  L  D  R  R  V  S  H  I  S  T  R  M  M  E  E  Q  S  A  T  P  I  P  S  S  R  P  M  T  P  S  S  W  T  *  I  P  I  R  L  L  T  S  S  S  L  M  L  V  M  W  L  W  *  L  V  V  E  T  G  D  V  L  E  F  L  R  T  G  R  S  T  R  V  A  L  R  Q  F  T  F  R  I  P  W  G  M  S  L  L  P  V  W  E  M  C  S  L  L  V  K  V  V  S  H  G  S  L  Y  L  R  V  K  V  S  S  Y  L  S  L  K  R  L  A  R  G  W  L  L  N  Q  L  Q  L  L  K  N  D  R  L  N  L  R  *  I  *  *  V  A  L  F  F  S  L  F  R  G  L  P  P  L  I  F  G  V  A  F  Q  H  P  M  Y  S  V  L  F  Y  I  P  F  F  V  R  K  K  Q  *  L  S  L  D  Q  S  V  A  F  L  C  D  G  I  S  L  *  E  F  K  D  L  V  D  E  F  I  H  L  F  Q  N  E  F  L  V  V  I  S  S  N  P  T  C  C  C  I  P  K  L  V  *  F  T  K  P  D  S  *  F  H  F  H  K  L  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51299" stop="51763"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSDLVFCSLQFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNVVMVTGGRNRGRVGILKNREKHKGSFETVHIQDSLGHEFATRLGNVFTLGKGSKPWVSLPKGKGIKLSIIEEARKRMAAQSATTA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49647" stop="49709"/>
                    <exon start="50532" stop="50609"/>
                    <exon start="50704" stop="50884"/>
                    <exon start="51141" stop="51244"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HTPLAGRRHSRQLICRKTAKMARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIILRNRLKYALTYREVISILMQRQVMVDGKVRTDKTYPAGFMDVVTIPKTNESFRLLYDTKGRFRLHSLRDEEAKV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="4" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50819" stop="50884"/>
                    <exon start="51141" stop="51461"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CNAKLWLMGKLEQIRLTLLVSWTLLLFQRRMRASDFFMTLRVGSVYTHSEMRKPRFEPVSCFFFVPVCFGCCAVKVVTLFSALCSSNFARFDQCSLDRRVSHISTRMMEEQSATPIPSSRPMTPSSWT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="53163" PGL_stop="56458"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53163" e_stop="53235"/>
            <exon e_start="54020" e_stop="54097"/>
            <exon e_start="54193" e_stop="54373"/>
            <exon e_start="54642" e_stop="54739"/>
            <exon e_start="54824" e_stop="55578"/>
            <exon e_start="55914" e_stop="55924"/>
            <exon e_start="56449" e_stop="56458"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.795" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.995"/>
          <exon-intron don_prob="0.900" acc_prob="0.416" e_score="0.545"/>
          <exon-only e_score="0.700"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53163" e_stop="53235" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54020" e_stop="54097" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54193" e_stop="54373" e_length="181"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.993">
            <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="54642" e_stop="54739" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.795">
            <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="0.995">
            <gDNA_exon_boundary e_start="54824" e_stop="55578" e_length="755"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="55579" i_stop="55913" i_length="335"/>
          </intron>
          <exon e_serial="6" e_score="0.545">
            <gDNA_exon_boundary e_start="55914" e_stop="55924" e_length="11"/>
          </exon>
          <intron i_serial="6" don_prob="0.900" acc_prob="0.416">
            <gDNA_intron_boundary i_start="55925" i_stop="56448" i_length="524"/>
          </intron>
          <exon e_serial="7" e_score="0.700">
            <gDNA_exon_boundary e_start="56449" e_stop="56458" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53163" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53167" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53169" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53169" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53172" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53174" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="54917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53176" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53177" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53177" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53178" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53178" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53180" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53180" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53180" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53181" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53181" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53181" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53181" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53181" stop="53235"/>
              <exon start="54020" stop="54097"/>
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              <exon start="54824" stop="54920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53181" stop="53235"/>
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              <exon start="54824" stop="54836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53183" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
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              <exon start="54824" stop="55079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53183" stop="53235"/>
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              <exon start="54193" stop="54373"/>
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              <exon start="54824" stop="55016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53183" stop="53235"/>
              <exon start="54020" stop="54097"/>
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              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="54892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53183" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53184" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
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              <exon start="54824" stop="54845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53185" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
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              <exon start="54824" stop="54990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53185" stop="53235"/>
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              <exon start="54824" stop="54897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53186" stop="53235"/>
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              <exon start="54824" stop="54921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53186" stop="53235"/>
              <exon start="54020" stop="54097"/>
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              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="54892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53186" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53189" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53192" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
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              <exon start="54824" stop="54954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53196" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
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              <exon start="54824" stop="55121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53199" stop="53235"/>
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              <exon start="54824" stop="55128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53202" stop="53235"/>
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              <exon start="54824" stop="55424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53202" stop="53235"/>
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              <exon start="54824" stop="55230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53206" stop="53235"/>
              <exon start="54020" stop="54097"/>
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              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53206" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53207" stop="53235"/>
              <exon start="54020" stop="54097"/>
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              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53208" stop="53235"/>
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              <exon start="54824" stop="55179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53217" stop="53235"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53217" stop="53235"/>
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              <exon start="54824" stop="54995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53217" stop="53235"/>
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              <exon start="54824" stop="54864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53218" stop="53235"/>
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              <exon start="54824" stop="55045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53221" stop="53235"/>
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              <exon start="54824" stop="55146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53225" stop="53235"/>
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              <exon start="54824" stop="55212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53228" stop="53235"/>
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              <exon start="54824" stop="55265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53229" stop="53235"/>
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              <exon start="54824" stop="54922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54024" stop="54097"/>
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              <exon start="54824" stop="55154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54217" stop="54373"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54237" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="54942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54240" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54257" stop="54373"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54305" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54321" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54645" stop="54739"/>
              <exon start="54824" stop="55312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54645" stop="54739"/>
              <exon start="54824" stop="55265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54645" stop="54739"/>
              <exon start="54824" stop="55211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54657" stop="54739"/>
              <exon start="54824" stop="55426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54658" stop="54739"/>
              <exon start="54824" stop="55310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54883" stop="55446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54944" stop="55333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54971" stop="55424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54979" stop="55462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54983" stop="55333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54992" stop="55317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55004" stop="55446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55027" stop="55578"/>
              <exon start="55914" stop="55924"/>
              <exon start="56449" stop="56458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412717" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55049" stop="55424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55061" stop="55456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55074" stop="55479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55093" stop="55479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55106" stop="55424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55107" stop="55424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228847" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55139" stop="55474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55165" stop="55424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55179" stop="55503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55185" stop="55456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55190" stop="55503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217551" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTTGAAGAGACACACCTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATG : GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT : GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG : ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG : TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGAACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGATGCCGTTCTTATTTTTTGTGTTGCATTTCAACATCTGTGTACTTGGTACTATTTTACATACCTTTTTTTGTCAGGAAAAAAGAAAGACTCAGTTGAGATCAATCAGTTGCCTTTTATGTGATAGTATTTTATTGTTACAGTTTATGATCTTTGTCGATGAGTTTATTCACTTATTTCAAAATGTGTTTTTGGTTGTAATATCTTTAAATCCAACCTGGTGTTGGATTCCAAATTTGGTATAGTGCACTAAACTTG : AAATAAGAATC : ATAAATATAG</gDNA_template>
            <first_frame> G  L  K  R  H  T  S  R  R  L  P  S  L  A  A  V  N  Q  S  G  N  R  Q  N   : G  K  R  V  E  E  T  F  E  E  A  Q  C  A  *  A  L  D  A  *  *  T  W  R  C  F   : C  S  Q  A  F  F  W  S  T  *  I  K  G  M  F  A  I  G  Y  Y  P  E  E  Q  V  E  I  C  V  D  V  P  *  G  H  F  Y  L  D  A  T  P  S  Y  G  *  W  E  S  *  N  R  *  D  L  P  C  W  F  H  G :   C  C  Y  Y  S  K  D  K  *  E  L  P  T  S  L  *  H  *  G  S  V  P  P  P  L  T  Q  R  R  G  S  Q   : V  Q  T  L  Q  G  S  I  S  P  V  W  T  E  G  Y  P  I  S  Q  H  I  *  W  K  N  N  P  L  P  *  S  P  H  Q  G  Q  *  H  H  Q  A  G  L  R  F  Q  *  D  C  *  L  H  Q  V  *  C  W  *  C  G  Y  G  Y  W  W  *  K  Q  G  T  C  W  N  S  *  E  *  R  E  A  Q  G  *  L  *  D  S  S  H  S  G  F  P  G  A  *  V  R  Y  P  F  G  E  C  V  H  S  W  *  R  *  *  A  M  G  V  F  T  *  G  *  R  Y  Q  V  I  Y  Y  *  R  G  S  Q  E  D  G  C  S  I  S  Y  N  C  L  I  I  I  G  *  T  *  D  *  F  N  R  F  G  H  F  S  L  C  L  E  G  C  R  S  Y  F  L  C  C  I  S  T  S  V  Y  L  V  L  F  Y  I  P  F  F  V  R  K  K  E  R  L  S  *  D  Q  S  V  A  F  Y  V  I  V  F  Y  C  Y  S  L  *  S  L  S  M  S  L  F  T  Y  F  K  M  C  F  W  L  *  Y  L  *  I  Q  P  G  V  G  F  Q  I  W  Y  S  A  L  N  L  :  K  *  E  S :   *  I  * </first_frame>
            <second_frame>  V  *  R  D  T  P  L  A  G  C  R  H  S  P  Q  L  I  S  R  E  T  A  K  M  :  A  R  G  L  K  K  H  L  K  R  L  N  A  P  K  H  W  M  L  D  K  L  G  G  A  F  :  A  P  K  P  S  S  G  P  H  K  S  R  E  C  L  P  L  V  I  I  L  R  N  R  L  K  Y  A  L  T  Y  R  E  V  I  S  I  L  M  Q  R  Q  V  M  V  D  G  K  V  R  T  D  K  T  Y  P  A  G  F  M   : D  V  V  T  I  P  K  T  N  E  S  F  R  L  L  Y  D  T  K  G  R  F  R  L  H  S  L  R  D  E  E  A  K  :  F  K  L  C  K  V  R  S  V  Q  F  G  Q  K  G  I  P  Y  L  N  T  Y  D  G  R  T  I  R  Y  P  D  P  L  I  K  A  N  D  T  I  K  L  D  L  D  S  N  K  I  V  D  F  I  K  F  D  V  G  N  V  V  M  V  T  G  G  R  N  R  G  R  V  G  I  L  K  N  R  E  K  H  K  G  S  F  E  T  V  H  I  Q  D  S  L  G  H  E  F  A  T  R  L  G  N  V  F  T  L  G  K  G  S  K  P  W  V  S  L  P  K  G  K  G  I  K  L  S  I  I  E  E  A  R  K  R  M  A  A  Q  S  A  T  T  A  *  *  S  *  V  E  L  E  I  N  L  I  D  L  V  I  F  L  F  V  *  R  D  A  V  L  I  F  C  V  A  F  Q  H  L  C  T  W  Y  Y  F  T  Y  L  F  L  S  G  K  K  K  D  S  V  E  I  N  Q  L  P  F  M  *  *  Y  F  I  V  T  V  Y  D  L  C  R  *  V  Y  S  L  I  S  K  C  V  F  G  C  N  I  F  K  S  N  L  V  L  D  S  K  F  G  I  V  H  *  T  * :   N  K  N   : H  K  Y   </second_frame>
            <third_frame>   F  E  E  T  H  L  S  P  V  A  V  T  R  R  S  *  S  V  G  K  P  P  K  W :   Q  E  G  *  R  N  I  *  R  G  S  M  R  L  S  I  G  C  L  I  N  L  E  V  L  L :   L  P  S  L  L  L  V  H  I  N  Q  G  N  V  C  H  W  L  L  S  *  G  T  G  *  N  M  R  *  R  T  V  R  S  F  L  S  *  C  N  A  K  L  W  L  M  G  K  L  E  Q  I  R  L  T  L  L  V  S  W  :  M  L  L  L  F  Q  R  Q  M  R  A  S  D  F  F  M  T  L  R  V  G  S  A  S  T  H  S  E  T  R  K  P  S :   S  N  F  A  R  F  D  Q  S  S  L  D  R  R  V  S  H  I  S  T  H  M  M  E  E  Q  S  A  T  L  I  P  S  S  R  P  M  T  P  S  S  W  T  *  I  P  I  R  L  L  T  S  S  S  L  M  L  V  M  W  L  W  L  L  V  V  E  T  G  D  V  L  E  F  L  R  I  E  R  S  T  R  V  A  L  R  Q  F  T  F  R  I  P  W  G  M  S  S  L  P  V  W  G  M  C  S  L  L  V  K  V  V  S  H  G  C  L  Y  L  R  V  K  V  S  S  Y  L  L  L  K  R  L  A  R  G  W  L  L  N  Q  L  Q  L  L  N  N  H  R  L  N  L  R  L  I  *  *  I  W  S  F  F  S  L  F  R  G  M  P  F  L  F  F  V  L  H  F  N  I  C  V  L  G  T  I  L  H  T  F  F  C  Q  E  K  R  K  T  Q  L  R  S  I  S  C  L  L  C  D  S  I  L  L  L  Q  F  M  I  F  V  D  E  F  I  H  L  F  Q  N  V  F  L  V  V  I  S  L  N  P  T  W  C  W  I  P  N  L  V  *  C  T  K  L   : E  I  R  I  :  I  N  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53170" stop="53235"/>
                    <exon start="54020" stop="54097"/>
                    <exon start="54193" stop="54373"/>
                    <exon start="54642" stop="54739"/>
                    <exon start="54824" stop="55258"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>855</number_coding_nucleotides>
                  <number_encoded_amino_acids>285</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RDTPLAGCRHSPQLISRETAKMARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIILRNRLKYALTYREVISILMQRQVMVDGKVRTDKTYPAGFMDVVTIPKTNESFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNVVMVTGGRNRGRVGILKNREKHKGSFETVHIQDSLGHEFATRLGNVFTLGKGSKPWVSLPKGKGIKLSIIEEARKRMAAQSATTA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55293" stop="55565"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IWSFFSLFRGMPFLFFVLHFNICVLGTILHTFFCQEKRKTQLRSISCLLCDSILLLQFMIFVDEFIHLFQNVFLVVISLNPTWCWIPNLV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="53163" e_stop="53235"/>
            <exon e_start="54020" e_stop="54097"/>
            <exon e_start="54193" e_stop="54373"/>
            <exon e_start="54642" e_stop="54739"/>
            <exon e_start="54824" e_stop="55324"/>
            <exon e_start="55398" e_stop="55410"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.795" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.922" e_score="0.996"/>
          <exon-only e_score="0.769"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53163" e_stop="53235" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="53236" i_stop="54019" i_length="784"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54020" e_stop="54097" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.998">
            <gDNA_intron_boundary i_start="54098" i_stop="54192" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54193" e_stop="54373" e_length="181"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.993">
            <gDNA_intron_boundary i_start="54374" i_stop="54641" i_length="268"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="54642" e_stop="54739" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.980" acc_prob="0.795">
            <gDNA_intron_boundary i_start="54740" i_stop="54823" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="54824" e_stop="55324" e_length="501"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.922">
            <gDNA_intron_boundary i_start="55325" i_stop="55397" i_length="73"/>
          </intron>
          <exon e_serial="6" e_score="0.769">
            <gDNA_exon_boundary e_start="55398" e_stop="55410" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53163" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53167" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53169" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53169" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53172" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53174" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="54917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53176" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53177" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53177" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53178" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53178" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53180" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53180" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53180" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53181" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342673" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53181" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53181" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53181" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53181" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="54920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53181" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="54836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53183" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53183" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53183" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="54892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302257" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53183" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53184" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="54845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53185" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="54990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53185" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="54897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53186" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="54921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53186" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="54892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53186" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53189" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53192" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="54954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53196" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53199" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53202" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53206" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53206" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53207" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53208" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53217" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53217" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="54995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53217" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="54864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53218" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53221" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53225" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53228" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537443" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53229" stop="53235"/>
              <exon start="54020" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="54922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54024" stop="54097"/>
              <exon start="54193" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54217" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54237" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="54942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54321" stop="54373"/>
              <exon start="54642" stop="54739"/>
              <exon start="54824" stop="55171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272375" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54645" stop="54739"/>
              <exon start="54824" stop="55312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54645" stop="54739"/>
              <exon start="54824" stop="55265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54645" stop="54739"/>
              <exon start="54824" stop="55211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54658" stop="54739"/>
              <exon start="54824" stop="55310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54992" stop="55317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55029" stop="55324"/>
              <exon start="55398" stop="55410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225330" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTTGAAGAGACACACCTCTCGCCGGTTGCCGTCACTCGCCGCAGTTAATCAGTCGGGAAACCGCCAAAATG : GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT : GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGAACAGATAAGACTTACCCTGCTGGTTTCATGG : ATGTTGTTACTATTCCAAAGACAAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGCCTCCACTCACTCAGAGACGAGGAAGCCAAG : TTCAAACTTTGCAAGGTTCGATCAGTCCAGTTTGGACAGAAGGGTATCCCATATCTCAACACATATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACCATCAAGCTGGACTTAGATTCCAATAAGATTGTTGACTTCATCAAGTTTGATGTTGGTAATGTGGTTATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAATAGAGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGATTCCCTGGGGCATGAGTTCGCTACCCGTTTGGGGAATGTGTTCACTCTTGGTAAAGGTAGTAAGCCATGGGTGTCTTTACCTAAGGGTAAAGGTATCAAGTTATCTATTATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAATCAGCTACAACTGCTTAATAATCATAGGTTGAACTTGAGATTAATTTAATAGATTTGGTCATTTTTCTCTTTGTTTAGAGGGAT : GAAAAAAGAAAGA</gDNA_template>
            <first_frame> G  L  K  R  H  T  S  R  R  L  P  S  L  A  A  V  N  Q  S  G  N  R  Q  N   : G  K  R  V  E  E  T  F  E  E  A  Q  C  A  *  A  L  D  A  *  *  T  W  R  C  F   : C  S  Q  A  F  F  W  S  T  *  I  K  G  M  F  A  I  G  Y  Y  P  E  E  Q  V  E  I  C  V  D  V  P  *  G  H  F  Y  L  D  A  T  P  S  Y  G  *  W  E  S  *  N  R  *  D  L  P  C  W  F  H  G :   C  C  Y  Y  S  K  D  K  *  E  L  P  T  S  L  *  H  *  G  S  V  P  P  P  L  T  Q  R  R  G  S  Q   : V  Q  T  L  Q  G  S  I  S  P  V  W  T  E  G  Y  P  I  S  Q  H  I  *  W  K  N  N  P  L  P  *  S  P  H  Q  G  Q  *  H  H  Q  A  G  L  R  F  Q  *  D  C  *  L  H  Q  V  *  C  W  *  C  G  Y  G  Y  W  W  *  K  Q  G  T  C  W  N  S  *  E  *  R  E  A  Q  G  *  L  *  D  S  S  H  S  G  F  P  G  A  *  V  R  Y  P  F  G  E  C  V  H  S  W  *  R  *  *  A  M  G  V  F  T  *  G  *  R  Y  Q  V  I  Y  Y  *  R  G  S  Q  E  D  G  C  S  I  S  Y  N  C  L  I  I  I  G  *  T  *  D  *  F  N  R  F  G  H  F  S  L  C  L  E  G   : *  K  K  K   </first_frame>
            <second_frame>  V  *  R  D  T  P  L  A  G  C  R  H  S  P  Q  L  I  S  R  E  T  A  K  M  :  A  R  G  L  K  K  H  L  K  R  L  N  A  P  K  H  W  M  L  D  K  L  G  G  A  F  :  A  P  K  P  S  S  G  P  H  K  S  R  E  C  L  P  L  V  I  I  L  R  N  R  L  K  Y  A  L  T  Y  R  E  V  I  S  I  L  M  Q  R  Q  V  M  V  D  G  K  V  R  T  D  K  T  Y  P  A  G  F  M   : D  V  V  T  I  P  K  T  N  E  S  F  R  L  L  Y  D  T  K  G  R  F  R  L  H  S  L  R  D  E  E  A  K  :  F  K  L  C  K  V  R  S  V  Q  F  G  Q  K  G  I  P  Y  L  N  T  Y  D  G  R  T  I  R  Y  P  D  P  L  I  K  A  N  D  T  I  K  L  D  L  D  S  N  K  I  V  D  F  I  K  F  D  V  G  N  V  V  M  V  T  G  G  R  N  R  G  R  V  G  I  L  K  N  R  E  K  H  K  G  S  F  E  T  V  H  I  Q  D  S  L  G  H  E  F  A  T  R  L  G  N  V  F  T  L  G  K  G  S  K  P  W  V  S  L  P  K  G  K  G  I  K  L  S  I  I  E  E  A  R  K  R  M  A  A  Q  S  A  T  T  A  *  *  S  *  V  E  L  E  I  N  L  I  D  L  V  I  F  L  F  V  *  R  D  :  E  K  R  K  </second_frame>
            <third_frame>   F  E  E  T  H  L  S  P  V  A  V  T  R  R  S  *  S  V  G  K  P  P  K  W :   Q  E  G  *  R  N  I  *  R  G  S  M  R  L  S  I  G  C  L  I  N  L  E  V  L  L :   L  P  S  L  L  L  V  H  I  N  Q  G  N  V  C  H  W  L  L  S  *  G  T  G  *  N  M  R  *  R  T  V  R  S  F  L  S  *  C  N  A  K  L  W  L  M  G  K  L  E  Q  I  R  L  T  L  L  V  S  W  :  M  L  L  L  F  Q  R  Q  M  R  A  S  D  F  F  M  T  L  R  V  G  S  A  S  T  H  S  E  T  R  K  P  S :   S  N  F  A  R  F  D  Q  S  S  L  D  R  R  V  S  H  I  S  T  H  M  M  E  E  Q  S  A  T  L  I  P  S  S  R  P  M  T  P  S  S  W  T  *  I  P  I  R  L  L  T  S  S  S  L  M  L  V  M  W  L  W  L  L  V  V  E  T  G  D  V  L  E  F  L  R  I  E  R  S  T  R  V  A  L  R  Q  F  T  F  R  I  P  W  G  M  S  S  L  P  V  W  G  M  C  S  L  L  V  K  V  V  S  H  G  C  L  Y  L  R  V  K  V  S  S  Y  L  L  L  K  R  L  A  R  G  W  L  L  N  Q  L  Q  L  L  N  N  H  R  L  N  L  R  L  I  *  *  I  W  S  F  F  S  L  F  R  G  M :   K  K  E  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53170" stop="53235"/>
                    <exon start="54020" stop="54097"/>
                    <exon start="54193" stop="54373"/>
                    <exon start="54642" stop="54739"/>
                    <exon start="54824" stop="55258"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>855</number_coding_nucleotides>
                  <number_encoded_amino_acids>285</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RDTPLAGCRHSPQLISRETAKMARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIILRNRLKYALTYREVISILMQRQVMVDGKVRTDKTYPAGFMDVVTIPKTNESFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNVVMVTGGRNRGRVGILKNREKHKGSFETVHIQDSLGHEFATRLGNVFTLGKGSKPWVSLPKGKGIKLSIIEEARKRMAAQSATTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="55447" PGL_stop="54930"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55447" e_stop="54930"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="55447" e_stop="54930" e_length="518"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55447" stop="54930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E581771" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTATCACATAAAAGGCAACTGATTGATCTCAACTGAGTCTTTCTTTTTTCCTGACAAAAAAAGGTATGTAAAATAGTACCAAGTACACAGATGTTGAAATGCAACACAAAAAATAAGAACGGCATCCCTCTAAACAAAGAGAAAAATGACCAAATCTATTAAATTAATCTCAAGTTCAACCTATGATTATTAAGCAGTTGTAGCTGATTGAGCAGCCATCCTCTTGCGAGCCTCTTCAATAATAGATAACTTGATACCTTTACCCTTAGGTAAAGACACCCATGGCTTACTACCTTTACCAAGAGTGAACACATTCCCCAAACGGGTAGCGAACTCATGCCCCAGGGAATCCTGAATGTGAACTGTCTCAAAGCTACCCTTGTGCTTCTCTCTATTCTTAAGAATTCCAACACGTCCCCTGTTTCTACCACCAGTAACCATAACCACATTACCAACATCAAACTTGATGAAGTCAACAATCTTATTGGAATCTAAGTCCAGCTTGATGGTGTCATTGG</gDNA_template>
            <first_frame> L  S  H  K  R  Q  L  I  D  L  N  *  V  F  L  F  S  *  Q  K  K  V  C  K  I  V  P  S  T  Q  M  L  K  C  N  T  K  N  K  N  G  I  P  L  N  K  E  K  N  D  Q  I  Y  *  I  N  L  K  F  N  L  *  L  L  S  S  C  S  *  L  S  S  H  P  L  A  S  L  F  N  N  R  *  L  D  T  F  T  L  R  *  R  H  P  W  L  T  T  F  T  K  S  E  H  I  P  Q  T  G  S  E  L  M  P  Q  G  I  L  N  V  N  C  L  K  A  T  L  V  L  L  S  I  L  K  N  S  N  T  S  P  V  S  T  T  S  N  H  N  H  I  T  N  I  K  L  D  E  V  N  N  L  I  G  I  *  V  Q  L  D  G  V  I   </first_frame>
            <second_frame>  Y  H  I  K  G  N  *  L  I  S  T  E  S  F  F  F  P  D  K  K  R  Y  V  K  *  Y  Q  V  H  R  C  *  N  A  T  Q  K  I  R  T  A  S  L  *  T  K  R  K  M  T  K  S  I  K  L  I  S  S  S  T  Y  D  Y  *  A  V  V  A  D  *  A  A  I  L  L  R  A  S  S  I  I  D  N  L  I  P  L  P  L  G  K  D  T  H  G  L  L  P  L  P  R  V  N  T  F  P  K  R  V  A  N  S  C  P  R  E  S  *  M  *  T  V  S  K  L  P  L  C  F  S  L  F  L  R  I  P  T  R  P  L  F  L  P  P  V  T  I  T  T  L  P  T  S  N  L  M  K  S  T  I  L  L  E  S  K  S  S  L  M  V  S  L  </second_frame>
            <third_frame>   I  T  *  K  A  T  D  *  S  Q  L  S  L  S  F  F  L  T  K  K  G  M  *  N  S  T  K  Y  T  D  V  E  M  Q  H  K  K  *  E  R  H  P  S  K  Q  R  E  K  *  P  N  L  L  N  *  S  Q  V  Q  P  M  I  I  K  Q  L  *  L  I  E  Q  P  S  S  C  E  P  L  Q  *  *  I  T  *  Y  L  Y  P  *  V  K  T  P  M  A  Y  Y  L  Y  Q  E  *  T  H  S  P  N  G  *  R  T  H  A  P  G  N  P  E  C  E  L  S  Q  S  Y  P  C  A  S  L  Y  S  *  E  F  Q  H  V  P  C  F  Y  H  Q  *  P  *  P  H  Y  Q  H  Q  T  *  *  S  Q  Q  S  Y  W  N  L  S  P  A  *  W  C  H  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55174" stop="54953"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RHPWLTTFTKSEHIPQTGSELMPQGILNVNCLKATLVLLSILKNSNTSPVSTTSNHNHITNIKLDEVNNLIGI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="56584" PGL_stop="58940"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56584" e_stop="56655"/>
            <exon e_start="57497" e_stop="57574"/>
            <exon e_start="57670" e_stop="57850"/>
            <exon e_start="58116" e_stop="58213"/>
            <exon e_start="58303" e_stop="58940"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56584" e_stop="56655" e_length="72"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57497" e_stop="57574" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57670" e_stop="57850" e_length="181"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58116" e_stop="58213" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.987">
            <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="58303" e_stop="58940" e_length="638"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56584" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56584" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56594" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56596" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56598" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56598" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56601" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56601" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56602" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56602" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56602" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56602" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56602" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56605" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56605" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56605" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56605" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56605" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56605" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288725" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56605" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56605" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56605" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56605" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56606" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56606" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56607" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56607" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56609" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56609" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56613" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56614" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56615" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56615" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56615" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56615" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56616" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56616" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56617" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56617" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56619" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56619" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56620" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56620" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285017" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56622" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705872" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56623" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56623" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56624" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56624" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56626" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56631" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56631" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56632" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56638" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57512" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57527" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57532" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57533" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57548" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57727" stop="57850"/>
              <exon start="58116" stop="58157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57826" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561782" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57838" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577655" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57838" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600505" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58132" stop="58213"/>
              <exon start="58303" stop="58546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58149" stop="58213"/>
              <exon start="58303" stop="58875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58170" stop="58213"/>
              <exon start="58303" stop="58914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557966" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58203" stop="58213"/>
              <exon start="58303" stop="58614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58210" stop="58213"/>
              <exon start="58303" stop="58913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252809" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58306" stop="58898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58377" stop="58888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58382" stop="58898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58462" stop="58898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58464" stop="58898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58477" stop="58923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58525" stop="58898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58570" stop="58940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58584" stop="58921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222098" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTTAAGACACACACCTCTCGCCGGTAGCCGTTACTCGCCGCAGCTAATCAGTCGGAAAACCGCCAAAATG : GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT : GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG : ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG : TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTAGAGATACCAATCTCATTTTGTATGTTGAATTTTAGCAATTTTGTATTTGGTACCGTTTAACTTTGTTTTGTTGGGAAAATAGGTTTGACTGAGTTTAAGATCATTCATTTGCTTTTTATGTGATAGTGTTTTTTTGGTCGCTTA</gDNA_template>
            <first_frame> G  L  R  H  T  P  L  A  G  S  R  Y  S  P  Q  L  I  S  R  K  T  A  K  M  :  A  R  G  L  K  K  H  L  K  R  L  N  A  P  K  H  W  M  L  D  K  L  G  G  A  F  :  A  P  K  P  S  S  G  P  H  K  S  R  E  C  L  P  L  V  I  I  L  R  N  R  L  K  Y  A  L  T  Y  R  E  V  I  S  I  L  M  Q  R  Q  V  M  V  D  G  K  V  R  T  D  K  T  Y  P  A  G  F  M   : D  V  V  T  I  P  K  T  N  E  S  F  R  L  L  Y  D  T  K  G  R  F  R  L  H  S  L  R  D  E  E  A  K  :  F  K  L  C  K  V  R  S  V  Q  F  G  Q  K  G  I  P  Y  L  N  T  Y  D  G  R  T  I  R  Y  P  D  P  L  I  K  A  N  D  T  I  K  L  D  L  D  S  N  K  I  V  D  F  I  K  F  D  V  G  N  V  V  M  V  T  G  G  R  N  R  G  R  V  G  I  L  K  N  R  E  K  H  K  G  S  F  E  T  V  H  I  Q  D  S  L  G  H  E  F  A  T  R  L  G  N  V  F  T  L  G  K  G  S  K  P  W  V  S  L  P  K  G  K  G  I  K  L  S  I  I  E  E  A  R  K  R  M  A  A  Q  S  A  T  A  A  *  N  V  *  V  G  L  M  M  N  L  T  G  W  A  M  I  L  T  V  *  R  Y  Q  S  H  F  V  C  *  I  L  A  I  L  Y  L  V  P  F  N  F  V  L  L  G  K  *  V  *  L  S  L  R  S  F  I  C  F  L  C  D  S  V  F  L  V  A   </first_frame>
            <second_frame>  V  *  D  T  H  L  S  P  V  A  V  T  R  R  S  *  S  V  G  K  P  P  K  W :   Q  E  G  *  R  N  I  *  R  G  S  M  R  L  S  I  G  C  L  I  N  L  E  V  L  L :   L  P  S  L  L  L  V  H  I  N  Q  G  N  V  C  H  W  L  L  S  *  G  T  G  *  N  M  R  *  R  T  V  R  S  F  L  S  *  C  N  A  K  L  W  L  M  G  K  L  G  Q  I  R  L  T  L  L  V  S  W  :  M  L  L  L  F  Q  R  R  M  R  A  S  D  F  F  M  T  L  R  V  G  S  V  S  T  H  S  E  M  R  K  P  S :   S  N  F  V  R  F  D  Q  C  S  L  D  R  R  G  S  H  I  S  T  L  M  M  E  E  Q  S  A  T  L  I  P  S  S  R  P  M  T  L  S  S  L  T  *  I  R  T  R  L  L  T  S  S  S  L  M  L  E  M  W  S  W  L  L  V  V  E  T  G  D  V  L  E  F  L  R  T  G  R  S  T  R  V  A  L  R  Q  F  T  F  R  T  P  W  G  T  S  L  L  L  V  W  A  M  C  S  L  L  A  R  V  V  S  H  G  C  L  Y  L  R  V  K  V  S  S  Y  L  S  L  K  R  L  A  R  G  W  L  L  S  Q  L  Q  L  L  K  M  S  R  L  D  L  *  *  I  *  Q  V  G  P  *  F  S  L  F  R  D  T  N  L  I  L  Y  V  E  F  *  Q  F  C  I  W  Y  R  L  T  L  F  C  W  E  N  R  F  D  *  V  *  D  H  S  F  A  F  Y  V  I  V  F  F  W  S  L  </second_frame>
            <third_frame>   F  K  T  H  T  S  R  R  *  P  L  L  A  A  A  N  Q  S  E  N  R  Q  N   : G  K  R  V  E  E  T  F  E  E  A  Q  C  A  *  A  L  D  A  *  *  T  W  R  C  F   : C  S  Q  A  F  F  W  S  T  *  I  K  G  M  F  A  I  G  Y  Y  P  E  E  Q  V  E  I  C  V  D  V  P  *  G  H  F  Y  L  D  A  T  P  S  Y  G  *  W  E  S  *  D  R  *  D  L  P  C  W  F  H  G :   C  C  Y  Y  S  K  D  E  *  E  L  P  T  S  L  *  H  *  G  S  V  P  S  P  L  T  Q  R  *  G  S  Q   : V  Q  T  L  *  G  S  I  S  A  V  W  T  E  G  D  P  I  S  Q  H  L  *  W  K  N  N  P  L  P  *  S  P  H  Q  G  Q  *  H  Y  Q  A  *  L  R  F  E  Q  D  C  *  L  H  Q  V  *  C  W  K  C  G  H  G  Y  W  W  *  K  Q  G  T  C  W  N  S  *  E  Q  G  E  A  Q  G  *  L  *  D  S  S  H  S  G  L  P  G  A  R  V  C  Y  S  S  G  Q  C  V  H  S  W  Q  G  *  *  A  M  G  V  S  T  *  G  *  R  Y  Q  V  I  Y  H  *  R  G  S  Q  E  D  G  C  S  V  S  Y  S  C  L  K  C  L  G  W  T  Y  D  E  F  N  R  L  G  H  D  S  H  C  L  E  I  P  I  S  F  C  M  L  N  F  S  N  F  V  F  G  T  V  *  L  C  F  V  G  K  I  G  L  T  E  F  K  I  I  H  L  L  F  M  *  *  C  F  F  G  R  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56584" stop="56655"/>
                    <exon start="57497" stop="57574"/>
                    <exon start="57670" stop="57850"/>
                    <exon start="58116" stop="58213"/>
                    <exon start="58303" stop="58737"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>861</number_coding_nucleotides>
                  <number_encoded_amino_acids>287</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLRHTPLAGSRYSPQLISRKTAKMARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIILRNRLKYALTYREVISILMQRQVMVDGKVRTDKTYPAGFMDVVTIPKTNESFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNVVMVTGGRNRGRVGILKNREKHKGSFETVHIQDSLGHEFATRLGNVFTLGKGSKPWVSLPKGKGIKLSIIEEARKRMAAQSATAA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="57496" e_stop="57574"/>
            <exon e_start="57670" e_stop="57850"/>
            <exon e_start="58116" e_stop="58213"/>
            <exon e_start="58303" e_stop="58940"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="57496" e_stop="57574" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57670" e_stop="57850" e_length="181"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="57851" i_stop="58115" i_length="265"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="58116" e_stop="58213" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.987">
            <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58303" e_stop="58940" e_length="638"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57496" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57496" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57512" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57527" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57532" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57533" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57548" stop="57574"/>
              <exon start="57670" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57727" stop="57850"/>
              <exon start="58116" stop="58157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57826" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561782" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57838" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577655" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57838" stop="57850"/>
              <exon start="58116" stop="58213"/>
              <exon start="58303" stop="58891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600505" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58132" stop="58213"/>
              <exon start="58303" stop="58546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58149" stop="58213"/>
              <exon start="58303" stop="58875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58170" stop="58213"/>
              <exon start="58303" stop="58914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557966" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58203" stop="58213"/>
              <exon start="58303" stop="58614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58210" stop="58213"/>
              <exon start="58303" stop="58913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252809" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58306" stop="58898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58377" stop="58888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58382" stop="58898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58462" stop="58898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58464" stop="58898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58477" stop="58923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58525" stop="58898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58570" stop="58940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58584" stop="58921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222098" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT : GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGG : ATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG : TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTAGAGATACCAATCTCATTTTGTATGTTGAATTTTAGCAATTTTGTATTTGGTACCGTTTAACTTTGTTTTGTTGGGAAAATAGGTTTGACTGAGTTTAAGATCATTCATTTGCTTTTTATGTGATAGTGTTTTTTTGGTCGCTTA</gDNA_template>
            <first_frame> G  K  R  V  E  E  T  F  E  E  A  Q  C  A  *  A  L  D  A  *  *  T  W  R  C  F   : C  S  Q  A  F  F  W  S  T  *  I  K  G  M  F  A  I  G  Y  Y  P  E  E  Q  V  E  I  C  V  D  V  P  *  G  H  F  Y  L  D  A  T  P  S  Y  G  *  W  E  S  *  D  R  *  D  L  P  C  W  F  H  G :   C  C  Y  Y  S  K  D  E  *  E  L  P  T  S  L  *  H  *  G  S  V  P  S  P  L  T  Q  R  *  G  S  Q   : V  Q  T  L  *  G  S  I  S  A  V  W  T  E  G  D  P  I  S  Q  H  L  *  W  K  N  N  P  L  P  *  S  P  H  Q  G  Q  *  H  Y  Q  A  *  L  R  F  E  Q  D  C  *  L  H  Q  V  *  C  W  K  C  G  H  G  Y  W  W  *  K  Q  G  T  C  W  N  S  *  E  Q  G  E  A  Q  G  *  L  *  D  S  S  H  S  G  L  P  G  A  R  V  C  Y  S  S  G  Q  C  V  H  S  W  Q  G  *  *  A  M  G  V  S  T  *  G  *  R  Y  Q  V  I  Y  H  *  R  G  S  Q  E  D  G  C  S  V  S  Y  S  C  L  K  C  L  G  W  T  Y  D  E  F  N  R  L  G  H  D  S  H  C  L  E  I  P  I  S  F  C  M  L  N  F  S  N  F  V  F  G  T  V  *  L  C  F  V  G  K  I  G  L  T  E  F  K  I  I  H  L  L  F  M  *  *  C  F  F  G  R  L </first_frame>
            <second_frame>  A  R  G  L  K  K  H  L  K  R  L  N  A  P  K  H  W  M  L  D  K  L  G  G  A  F  :  A  P  K  P  S  S  G  P  H  K  S  R  E  C  L  P  L  V  I  I  L  R  N  R  L  K  Y  A  L  T  Y  R  E  V  I  S  I  L  M  Q  R  Q  V  M  V  D  G  K  V  R  T  D  K  T  Y  P  A  G  F  M   : D  V  V  T  I  P  K  T  N  E  S  F  R  L  L  Y  D  T  K  G  R  F  R  L  H  S  L  R  D  E  E  A  K  :  F  K  L  C  K  V  R  S  V  Q  F  G  Q  K  G  I  P  Y  L  N  T  Y  D  G  R  T  I  R  Y  P  D  P  L  I  K  A  N  D  T  I  K  L  D  L  D  S  N  K  I  V  D  F  I  K  F  D  V  G  N  V  V  M  V  T  G  G  R  N  R  G  R  V  G  I  L  K  N  R  E  K  H  K  G  S  F  E  T  V  H  I  Q  D  S  L  G  H  E  F  A  T  R  L  G  N  V  F  T  L  G  K  G  S  K  P  W  V  S  L  P  K  G  K  G  I  K  L  S  I  I  E  E  A  R  K  R  M  A  A  Q  S  A  T  A  A  *  N  V  *  V  G  L  M  M  N  L  T  G  W  A  M  I  L  T  V  *  R  Y  Q  S  H  F  V  C  *  I  L  A  I  L  Y  L  V  P  F  N  F  V  L  L  G  K  *  V  *  L  S  L  R  S  F  I  C  F  L  C  D  S  V  F  L  V  A   </second_frame>
            <third_frame>   Q  E  G  *  R  N  I  *  R  G  S  M  R  L  S  I  G  C  L  I  N  L  E  V  L  L :   L  P  S  L  L  L  V  H  I  N  Q  G  N  V  C  H  W  L  L  S  *  G  T  G  *  N  M  R  *  R  T  V  R  S  F  L  S  *  C  N  A  K  L  W  L  M  G  K  L  G  Q  I  R  L  T  L  L  V  S  W  :  M  L  L  L  F  Q  R  R  M  R  A  S  D  F  F  M  T  L  R  V  G  S  V  S  T  H  S  E  M  R  K  P  S :   S  N  F  V  R  F  D  Q  C  S  L  D  R  R  G  S  H  I  S  T  L  M  M  E  E  Q  S  A  T  L  I  P  S  S  R  P  M  T  L  S  S  L  T  *  I  R  T  R  L  L  T  S  S  S  L  M  L  E  M  W  S  W  L  L  V  V  E  T  G  D  V  L  E  F  L  R  T  G  R  S  T  R  V  A  L  R  Q  F  T  F  R  T  P  W  G  T  S  L  L  L  V  W  A  M  C  S  L  L  A  R  V  V  S  H  G  C  L  Y  L  R  V  K  V  S  S  Y  L  S  L  K  R  L  A  R  G  W  L  L  S  Q  L  Q  L  L  K  M  S  R  L  D  L  *  *  I  *  Q  V  G  P  *  F  S  L  F  R  D  T  N  L  I  L  Y  V  E  F  *  Q  F  C  I  W  Y  R  L  T  L  F  C  W  E  N  R  F  D  *  V  *  D  H  S  F  A  F  Y  V  I  V  F  F  W  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57497" stop="57574"/>
                    <exon start="57670" stop="57850"/>
                    <exon start="58116" stop="58213"/>
                    <exon start="58303" stop="58737"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>789</number_coding_nucleotides>
                  <number_encoded_amino_acids>263</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIILRNRLKYALTYREVISILMQRQVMVDGKVRTDKTYPAGFMDVVTIPKTNESFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNVVMVTGGRNRGRVGILKNREKHKGSFETVHIQDSLGHEFATRLGNVFTLGKGSKPWVSLPKGKGIKLSIIEEARKRMAAQSATAA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="56623" e_stop="56655"/>
            <exon e_start="57497" e_stop="57574"/>
            <exon e_start="57670" e_stop="58213"/>
            <exon e_start="58303" e_stop="58940"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.987" e_score="0.987"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56623" e_stop="56655" e_length="33"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="56656" i_stop="57496" i_length="841"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57497" e_stop="57574" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="57575" i_stop="57669" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="57670" e_stop="58213" e_length="544"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.987">
            <gDNA_intron_boundary i_start="58214" i_stop="58302" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58303" e_stop="58940" e_length="638"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56623" stop="56655"/>
              <exon start="57497" stop="57574"/>
              <exon start="57670" stop="58142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57570" stop="57574"/>
              <exon start="57670" stop="58048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58132" stop="58213"/>
              <exon start="58303" stop="58546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58149" stop="58213"/>
              <exon start="58303" stop="58875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58170" stop="58213"/>
              <exon start="58303" stop="58914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557966" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58203" stop="58213"/>
              <exon start="58303" stop="58614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58210" stop="58213"/>
              <exon start="58303" stop="58913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252809" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58306" stop="58898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58377" stop="58888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58382" stop="58898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58462" stop="58898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58464" stop="58898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58477" stop="58923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58525" stop="58898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58570" stop="58940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58584" stop="58921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222098" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGCAGCTAATCAGTCGGAAAACCGCCAAAATG : GCAAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGATAAACTTGGAGGTGCTTTT : GCTCCCAAGCCTTCTTCTGGTCCACATAAATCAAGGGAATGTTTGCCATTGGTTATTATCCTGAGGAACAGGTTGAAATATGCGTTGACGTACCGTGAGGTCATTTCTATCTTGATGCAACGCCAAGTTATGGTTGATGGGAAAGTTAGGACAGATAAGACTTACCCTGCTGGTTTCATGGGTAAGAACAGCTCCATTAGATTGTTTTTTCATTTCATAATCTTTAGATTTTTGTTCTCCTTATTTCTGTGCTGCTTAGGTTTGTTATCTTAGTGATTCATCTATACACATGGTTTCACAGTTCCGAAGACAATTGTTGATCAGATTGTCTACAAGCTTTTTTATCAAAAACCATTGTCTCGTGTCCTTTTTCTTCTTTGTTCTCTTGTTGCTATGTTTGTTGAATTCCTTGATAAATTGGTAATGCTGTTATTTTGTTTGTGTAGATGTTGTTACTATTCCAAAGACGAATGAGAGCTTCCGACTTCTTTATGACACTAAGGGTCGGTTCCGTCTCCACTCACTCAGAGATGAGGAAGCCAAG : TTCAAACTTTGTAAGGTTCGATCAGTGCAGTTTGGACAGAAGGGGATCCCATATCTCAACACTTATGATGGAAGAACAATCCGCTACCCTGATCCCCTCATCAAGGCCAATGACACTATCAAGCTTGACTTAGATTCGAACAAGATTGTTGACTTCATCAAGTTTGATGTTGGAAATGTGGTCATGGTTACTGGTGGTAGAAACAGGGGACGTGTTGGAATTCTTAAGAACAGGGAGAAGCACAAGGGTAGCTTTGAGACAGTTCACATTCAGGACTCCCTGGGGCACGAGTTTGCTACTCGTCTGGGCAATGTGTTCACTCTTGGCAAGGGTAGTAAGCCATGGGTGTCTCTACCTAAGGGTAAAGGTATCAAGTTATCTATCATTGAAGAGGCTCGCAAGAGGATGGCTGCTCAGTCAGCTACAGCTGCTTAAAATGTCTAGGTTGGACTTATGATGAATTTAACAGGTTGGGCCATGATTCTCACTGTTTAGAGATACCAATCTCATTTTGTATGTTGAATTTTAGCAATTTTGTATTTGGTACCGTTTAACTTTGTTTTGTTGGGAAAATAGGTTTGACTGAGTTTAAGATCATTCATTTGCTTTTTATGTGATAGTGTTTTTTTGGTCGCTTA</gDNA_template>
            <first_frame> P  Q  L  I  S  R  K  T  A  K  M  :  A  R  G  L  K  K  H  L  K  R  L  N  A  P  K  H  W  M  L  D  K  L  G  G  A  F  :  A  P  K  P  S  S  G  P  H  K  S  R  E  C  L  P  L  V  I  I  L  R  N  R  L  K  Y  A  L  T  Y  R  E  V  I  S  I  L  M  Q  R  Q  V  M  V  D  G  K  V  R  T  D  K  T  Y  P  A  G  F  M  G  K  N  S  S  I  R  L  F  F  H  F  I  I  F  R  F  L  F  S  L  F  L  C  C  L  G  L  L  S  *  *  F  I  Y  T  H  G  F  T  V  P  K  T  I  V  D  Q  I  V  Y  K  L  F  Y  Q  K  P  L  S  R  V  L  F  L  L  C  S  L  V  A  M  F  V  E  F  L  D  K  L  V  M  L  L  F  C  L  C  R  C  C  Y  Y  S  K  D  E  *  E  L  P  T  S  L  *  H  *  G  S  V  P  S  P  L  T  Q  R  *  G  S  Q   : V  Q  T  L  *  G  S  I  S  A  V  W  T  E  G  D  P  I  S  Q  H  L  *  W  K  N  N  P  L  P  *  S  P  H  Q  G  Q  *  H  Y  Q  A  *  L  R  F  E  Q  D  C  *  L  H  Q  V  *  C  W  K  C  G  H  G  Y  W  W  *  K  Q  G  T  C  W  N  S  *  E  Q  G  E  A  Q  G  *  L  *  D  S  S  H  S  G  L  P  G  A  R  V  C  Y  S  S  G  Q  C  V  H  S  W  Q  G  *  *  A  M  G  V  S  T  *  G  *  R  Y  Q  V  I  Y  H  *  R  G  S  Q  E  D  G  C  S  V  S  Y  S  C  L  K  C  L  G  W  T  Y  D  E  F  N  R  L  G  H  D  S  H  C  L  E  I  P  I  S  F  C  M  L  N  F  S  N  F  V  F  G  T  V  *  L  C  F  V  G  K  I  G  L  T  E  F  K  I  I  H  L  L  F  M  *  *  C  F  F  G  R  L </first_frame>
            <second_frame>  R  S  *  S  V  G  K  P  P  K  W :   Q  E  G  *  R  N  I  *  R  G  S  M  R  L  S  I  G  C  L  I  N  L  E  V  L  L :   L  P  S  L  L  L  V  H  I  N  Q  G  N  V  C  H  W  L  L  S  *  G  T  G  *  N  M  R  *  R  T  V  R  S  F  L  S  *  C  N  A  K  L  W  L  M  G  K  L  G  Q  I  R  L  T  L  L  V  S  W  V  R  T  A  P  L  D  C  F  F  I  S  *  S  L  D  F  C  S  P  Y  F  C  A  A  *  V  C  Y  L  S  D  S  S  I  H  M  V  S  Q  F  R  R  Q  L  L  I  R  L  S  T  S  F  F  I  K  N  H  C  L  V  S  F  F  F  F  V  L  L  L  L  C  L  L  N  S  L  I  N  W  *  C  C  Y  F  V  C  V  D  V  V  T  I  P  K  T  N  E  S  F  R  L  L  Y  D  T  K  G  R  F  R  L  H  S  L  R  D  E  E  A  K  :  F  K  L  C  K  V  R  S  V  Q  F  G  Q  K  G  I  P  Y  L  N  T  Y  D  G  R  T  I  R  Y  P  D  P  L  I  K  A  N  D  T  I  K  L  D  L  D  S  N  K  I  V  D  F  I  K  F  D  V  G  N  V  V  M  V  T  G  G  R  N  R  G  R  V  G  I  L  K  N  R  E  K  H  K  G  S  F  E  T  V  H  I  Q  D  S  L  G  H  E  F  A  T  R  L  G  N  V  F  T  L  G  K  G  S  K  P  W  V  S  L  P  K  G  K  G  I  K  L  S  I  I  E  E  A  R  K  R  M  A  A  Q  S  A  T  A  A  *  N  V  *  V  G  L  M  M  N  L  T  G  W  A  M  I  L  T  V  *  R  Y  Q  S  H  F  V  C  *  I  L  A  I  L  Y  L  V  P  F  N  F  V  L  L  G  K  *  V  *  L  S  L  R  S  F  I  C  F  L  C  D  S  V  F  L  V  A   </second_frame>
            <third_frame>   A  A  N  Q  S  E  N  R  Q  N   : G  K  R  V  E  E  T  F  E  E  A  Q  C  A  *  A  L  D  A  *  *  T  W  R  C  F   : C  S  Q  A  F  F  W  S  T  *  I  K  G  M  F  A  I  G  Y  Y  P  E  E  Q  V  E  I  C  V  D  V  P  *  G  H  F  Y  L  D  A  T  P  S  Y  G  *  W  E  S  *  D  R  *  D  L  P  C  W  F  H  G  *  E  Q  L  H  *  I  V  F  S  F  H  N  L  *  I  F  V  L  L  I  S  V  L  L  R  F  V  I  L  V  I  H  L  Y  T  W  F  H  S  S  E  D  N  C  *  S  D  C  L  Q  A  F  L  S  K  T  I  V  S  C  P  F  S  S  L  F  S  C  C  Y  V  C  *  I  P  *  *  I  G  N  A  V  I  L  F  V  *  M  L  L  L  F  Q  R  R  M  R  A  S  D  F  F  M  T  L  R  V  G  S  V  S  T  H  S  E  M  R  K  P  S :   S  N  F  V  R  F  D  Q  C  S  L  D  R  R  G  S  H  I  S  T  L  M  M  E  E  Q  S  A  T  L  I  P  S  S  R  P  M  T  L  S  S  L  T  *  I  R  T  R  L  L  T  S  S  S  L  M  L  E  M  W  S  W  L  L  V  V  E  T  G  D  V  L  E  F  L  R  T  G  R  S  T  R  V  A  L  R  Q  F  T  F  R  T  P  W  G  T  S  L  L  L  V  W  A  M  C  S  L  L  A  R  V  V  S  H  G  C  L  Y  L  R  V  K  V  S  S  Y  L  S  L  K  R  L  A  R  G  W  L  L  S  Q  L  Q  L  L  K  M  S  R  L  D  L  *  *  I  *  Q  V  G  P  *  F  S  L  F  R  D  T  N  L  I  L  Y  V  E  F  *  Q  F  C  I  W  Y  R  L  T  L  F  C  W  E  N  R  F  D  *  V  *  D  H  S  F  A  F  Y  V  I  V  F  F  W  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58094" stop="58213"/>
                    <exon start="58303" stop="58737"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CCYFVCVDVVTIPKTNESFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSNKIVDFIKFDVGNVVMVTGGRNRGRVGILKNREKHKGSFETVHIQDSLGHEFATRLGNVFTLGKGSKPWVSLPKGKGIKLSIIEEARKRMAAQSATAA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56623" stop="56655"/>
                    <exon start="57497" stop="57574"/>
                    <exon start="57670" stop="57942"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PQLISRKTAKMARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIILRNRLKYALTYREVISILMQRQVMVDGKVRTDKTYPAGFMGKNSSIRLFFHFIIFRFLFSLFLCCLGLLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="58895" PGL_stop="58419"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58895" e_stop="58419"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="58895" e_stop="58419" e_length="477"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58895" stop="58419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286362" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTAAACTCAGTCAAACCTATTTTCCCAACAAAACAAAGTTAAACGGTACCAAATACAAAATTGCTAAAATTCAACATACAAAATGAGATTGGTATCTCTAAACAGTGAGAATCATGGCCCAACCTGTTAAATTCATCATAAGTCCAACCTAGACATTTTAAGCAGCTGTAGCTGACTGAGCAGCCATCCTCTTGCGAGCCTCTTCAATGATAGATAACTTGATACCTTTACCCTTAGGTAGAGACACCCATGGCTTACTACCCTTGCCAAGAGTGAACACATTGCCCAGACGAGTAGCAAACTCGTGCCCCAGGGAGTCCTGAATGTGAACTGTCTCAAAGCTACCCTTGTGCTTCTCCCTGTTCTTAAGAATTCCAACACGTCCCCTGTTTCTACCACCAGTAACCATGACCACATTTCCAACATCAAACTTGATGAAGTCAACAATCTTGTTCGAATCTAAGTCAAGCTTGATA</gDNA_template>
            <first_frame> L  K  L  S  Q  T  Y  F  P  N  K  T  K  L  N  G  T  K  Y  K  I  A  K  I  Q  H  T  K  *  D  W  Y  L  *  T  V  R  I  M  A  Q  P  V  K  F  I  I  S  P  T  *  T  F  *  A  A  V  A  D  *  A  A  I  L  L  R  A  S  S  M  I  D  N  L  I  P  L  P  L  G  R  D  T  H  G  L  L  P  L  P  R  V  N  T  L  P  R  R  V  A  N  S  C  P  R  E  S  *  M  *  T  V  S  K  L  P  L  C  F  S  L  F  L  R  I  P  T  R  P  L  F  L  P  P  V  T  M  T  T  F  P  T  S  N  L  M  K  S  T  I  L  F  E  S  K  S  S  L  I </first_frame>
            <second_frame>  L  N  S  V  K  P  I  F  P  T  K  Q  S  *  T  V  P  N  T  K  L  L  K  F  N  I  Q  N  E  I  G  I  S  K  Q  *  E  S  W  P  N  L  L  N  S  S  *  V  Q  P  R  H  F  K  Q  L  *  L  T  E  Q  P  S  S  C  E  P  L  Q  *  *  I  T  *  Y  L  Y  P  *  V  E  T  P  M  A  Y  Y  P  C  Q  E  *  T  H  C  P  D  E  *  Q  T  R  A  P  G  S  P  E  C  E  L  S  Q  S  Y  P  C  A  S  P  C  S  *  E  F  Q  H  V  P  C  F  Y  H  Q  *  P  *  P  H  F  Q  H  Q  T  *  *  S  Q  Q  S  C  S  N  L  S  Q  A  *   </second_frame>
            <third_frame>   *  T  Q  S  N  L  F  S  Q  Q  N  K  V  K  R  Y  Q  I  Q  N  C  *  N  S  T  Y  K  M  R  L  V  S  L  N  S  E  N  H  G  P  T  C  *  I  H  H  K  S  N  L  D  I  L  S  S  C  S  *  L  S  S  H  P  L  A  S  L  F  N  D  R  *  L  D  T  F  T  L  R  *  R  H  P  W  L  T  T  L  A  K  S  E  H  I  A  Q  T  S  S  K  L  V  P  Q  G  V  L  N  V  N  C  L  K  A  T  L  V  L  L  P  V  L  K  N  S  N  T  S  P  V  S  T  T  S  N  H  D  H  I  S  N  I  K  L  D  E  V  N  N  L  V  R  I  *  V  K  L  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58653" stop="58432"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RHPWLTTLAKSEHIAQTSSKLVPQGVLNVNCLKATLVLLPVLKNSNTSPVSTTSNHDHISNIKLDEVNNLVRI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="61377" PGL_stop="60918"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61377" e_stop="60918"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="61377" e_stop="60918" e_length="460"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61377" stop="60918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61377" stop="60918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436197" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAATTACAACAAGACTTCGCGGTTATAGCATCTCCTCTTGAGGATAATTTCCACACCTATTAACTCCAACCCCTCCCTTATGAATTAGCTTGGAAAATCGTTTGCAAGAAGGCGTTTCGATCATCTCAGGGGACTTGTCCTGATGAGTTGAAGGAATTCACAGAGGCTATAGTGAGAAAATGTGGAGGTTTGCCTCTTGCAATTGTAGCCATCGGAGGCTTATTGTCGTGTAAGGGAAGAAATACTCGTGTGTGGCAATCTGTTCTCGATACCTTAGATTGGGATCATAACCGAGACATTGGGCGTCTGAACAAGGCCTTGTTGTTCAGCTATAATCACCTTCCATTTTACCTTAAGTATTGTTTCCTTTATCTCGGTTTGTTCCCTGAGGACTATGAGATTGGGAGGAAAAAGCTGATCCGAATGTGGGTGGCCGAGGGGTTTGTTGAAGGAACTGCT</gDNA_template>
            <first_frame> I  I  T  T  R  L  R  G  Y  S  I  S  S  *  G  *  F  P  H  L  L  T  P  T  P  P  L  *  I  S  L  E  N  R  L  Q  E  G  V  S  I  I  S  G  D  L  S  *  *  V  E  G  I  H  R  G  Y  S  E  K  M  W  R  F  A  S  C  N  C  S  H  R  R  L  I  V  V  *  G  K  K  Y  S  C  V  A  I  C  S  R  Y  L  R  L  G  S  *  P  R  H  W  A  S  E  Q  G  L  V  V  Q  L  *  S  P  S  I  L  P  *  V  L  F  P  L  S  R  F  V  P  *  G  L  *  D  W  E  E  K  A  D  P  N  V  G  G  R  G  V  C  *  R  N  C  </first_frame>
            <second_frame>  *  L  Q  Q  D  F  A  V  I  A  S  P  L  E  D  N  F  H  T  Y  *  L  Q  P  L  P  Y  E  L  A  W  K  I  V  C  K  K  A  F  R  S  S  Q  G  T  C  P  D  E  L  K  E  F  T  E  A  I  V  R  K  C  G  G  L  P  L  A  I  V  A  I  G  G  L  L  S  C  K  G  R  N  T  R  V  W  Q  S  V  L  D  T  L  D  W  D  H  N  R  D  I  G  R  L  N  K  A  L  L  F  S  Y  N  H  L  P  F  Y  L  K  Y  C  F  L  Y  L  G  L  F  P  E  D  Y  E  I  G  R  K  K  L  I  R  M  W  V  A  E  G  F  V  E  G  T  A </second_frame>
            <third_frame>   N  Y  N  K  T  S  R  L  *  H  L  L  L  R  I  I  S  T  P  I  N  S  N  P  S  L  M  N  *  L  G  K  S  F  A  R  R  R  F  D  H  L  R  G  L  V  L  M  S  *  R  N  S  Q  R  L  *  *  E  N  V  E  V  C  L  L  Q  L  *  P  S  E  A  Y  C  R  V  R  E  E  I  L  V  C  G  N  L  F  S  I  P  *  I  G  I  I  T  E  T  L  G  V  *  T  R  P  C  C  S  A  I  I  T  F  H  F  T  L  S  I  V  S  F  I  S  V  C  S  L  R  T  M  R  L  G  G  K  S  *  S  E  C  G  W  P  R  G  L  L  K  E  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61313" stop="60918"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQPLPYELAWKIVCKKAFRSSQGTCPDELKEFTEAIVRKCGGLPLAIVAIGGLLSCKGRNTRVWQSVLDTLDWDHNRDIGRLNKALLFSYNHLPFYLKYCFLYLGLFPEDYEIGRKKLIRMWVAEGFVEGTA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="70566" PGL_stop="62644"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70566" e_stop="70473"/>
            <exon e_start="70382" e_stop="70315"/>
            <exon e_start="69463" e_stop="68795"/>
            <exon e_start="68489" e_stop="68377"/>
            <exon e_start="67447" e_stop="67188"/>
            <exon e_start="66809" e_stop="66688"/>
            <exon e_start="65356" e_stop="65288"/>
            <exon e_start="64705" e_stop="64652"/>
            <exon e_start="64498" e_stop="64397"/>
            <exon e_start="63570" e_stop="63448"/>
            <exon e_start="63006" e_stop="62644"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.931" acc_prob="0.833" e_score="0.991"/>
          <exon-intron don_prob="0.935" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.986"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.263" acc_prob="0.877" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70566" e_stop="70473" e_length="94"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="70472" i_stop="70383" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70382" e_stop="70315" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.941" acc_prob="0.000">
            <gDNA_intron_boundary i_start="70314" i_stop="69464" i_length="851"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69463" e_stop="68795" e_length="669"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68794" i_stop="68490" i_length="305"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="68489" e_stop="68377" e_length="113"/>
          </exon>
          <intron i_serial="4" don_prob="0.931" acc_prob="0.833">
            <gDNA_intron_boundary i_start="68376" i_stop="67448" i_length="929"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="67447" e_stop="67188" e_length="260"/>
          </exon>
          <intron i_serial="5" don_prob="0.935" acc_prob="0.998">
            <gDNA_intron_boundary i_start="67187" i_stop="66810" i_length="378"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="66809" e_stop="66688" e_length="122"/>
          </exon>
          <intron i_serial="6" don_prob="0.960" acc_prob="0.986">
            <gDNA_intron_boundary i_start="66687" i_stop="65357" i_length="1331"/>
          </intron>
          <exon e_serial="7" e_score="0.986">
            <gDNA_exon_boundary e_start="65356" e_stop="65288" e_length="69"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65287" i_stop="64706" i_length="582"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="64705" e_stop="64652" e_length="54"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="64651" i_stop="64499" i_length="153"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="64498" e_stop="64397" e_length="102"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.973">
            <gDNA_intron_boundary i_start="64396" i_stop="63571" i_length="826"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="63570" e_stop="63448" e_length="123"/>
          </exon>
          <intron i_serial="10" don_prob="0.263" acc_prob="0.877">
            <gDNA_intron_boundary i_start="63447" i_stop="63007" i_length="441"/>
          </intron>
          <exon e_serial="11" e_score="0.989">
            <gDNA_exon_boundary e_start="63006" e_stop="62644" e_length="363"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70566" stop="70473"/>
              <exon start="70382" stop="70315"/>
              <exon start="69463" stop="69336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70543" stop="70473"/>
              <exon start="70382" stop="70315"/>
              <exon start="69463" stop="69052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70538" stop="70473"/>
              <exon start="70382" stop="70315"/>
              <exon start="69463" stop="68846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70508" stop="70473"/>
              <exon start="70382" stop="70315"/>
              <exon start="69463" stop="68795"/>
              <exon start="68489" stop="68377"/>
              <exon start="67447" stop="67188"/>
              <exon start="66809" stop="66688"/>
              <exon start="65356" stop="65288"/>
              <exon start="64705" stop="64652"/>
              <exon start="64498" stop="64397"/>
              <exon start="63570" stop="63448"/>
              <exon start="63006" stop="62644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70494" stop="70473"/>
              <exon start="70382" stop="70315"/>
              <exon start="69463" stop="69052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70492" stop="70473"/>
              <exon start="70382" stop="70315"/>
              <exon start="69463" stop="68914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70491" stop="70473"/>
              <exon start="70382" stop="70315"/>
              <exon start="69463" stop="69048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70490" stop="70473"/>
              <exon start="70382" stop="70315"/>
              <exon start="69463" stop="68855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452390" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70487" stop="70473"/>
              <exon start="70382" stop="70315"/>
              <exon start="69463" stop="68795"/>
              <exon start="68489" stop="68398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69315" stop="68795"/>
              <exon start="68489" stop="68377"/>
              <exon start="67447" stop="67358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69111" stop="68795"/>
              <exon start="68489" stop="68377"/>
              <exon start="67447" stop="67207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67376" stop="67188"/>
              <exon start="66809" stop="66688"/>
              <exon start="65356" stop="65288"/>
              <exon start="64705" stop="64652"/>
              <exon start="64498" stop="64398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64469" stop="64397"/>
              <exon start="63570" stop="63448"/>
              <exon start="63006" stop="62656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367744" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCAAAGGACAAAGGATAAGAGGAGTTATTTATAGCAATTTCGAGTTGCCAATTTCAGCAATGGCTTCTGTATTGTCAACTTCCTTGTATCAAG : ATAGAGGACTGAGAATTGTAGCCTCTACTGATGGATTTGTGCCAACTATTTGCTGCCCCTATCGGAAG : ACCTTGTTTACAGGTACTACTCCTGTTTCAATATGGAAGCTCAAATTTGTCTCCAGTAGTCCATTTCAAAAGGCTCCTTTAGCTCCTTGTATAAAGTGTGAGAACAAGGAAAAGAATCAGGGCTCTTTTGAGCAGGTGTCTGTCGAGCGTTTTCCTTATCACAGTTATATGGACTCCACTTCTGGGCAACTTGAACCAGCATCTGGAGCTCGCGCTAGTATTCCTGGGAAGGAGTACTGGCCAGAAGGCACAGCTAGTCGAGTTCAGGCCGCCAGGGCTCCTGAACCAGATGGTATTTCAACTGGAACTCCATCTTATGGAAAAGCTCCTGGAAGTAGAAGAAAGAAGTACAAGGCATCTGCTTCCTCTTCCCAGCCTTCAGAAATCAATGTAATTTCTGATGATCCTCTGGAGACTCCAGATAGTGTACCAGAAGAGCCAAAGGATCTTTCCTCAGAGTATGTCATTTATCAGCCTGAACAAGATGAAGAAGAGCTGACAGGCTATGAGCTAGATAAAAGACATGGACGGCCCCACCCATTTATTGATCCAAAGGTAAAGAAGGAAATAGAGAAGCCGCTTACTAGTGAAGAATTATGGTGGAATTGGAGAAAGCCTGAAAAGGAGCAATGGTCTAGGTGGCAGAGGCGGCGCCCTGATGTTGAAACG : GTCTTTCTTAAAGCTATGGCAGAGACAGGACAAGTAAAGCTCTATGGTGAGCATCCTACATTGACAGAGACTGCGCTCTATAGAGCAAGGAGACATTTATATAAGGAGGAAAG : GCTACAGGCTGAAAAAGAAAAAATGGAAAAGATTGGTCCTATTGCATACTACTCAGAGTGGGTCAAAGCTTGGAAAAGAGATACTTCTCGAGATGCCATTCAAAAGCATTTTGAAGAGACTGGTGAAGATGAGAACACTCAACTCATCGAAATGTTCTCCCATCAAACAGATCGTGAATACCGGATAATGATGGGAACTGATATGCGTATTCCTCGTGACCCGTTGGCCATGAGAATGCGGGAGGATCAAATAAAACAAA : TTTGGGGTGGAGATCCAGTTTACCCGACCATTAATTACATTCAAGATCCTGATGAAGTGATTGATTTCAGGGGTCCAGACTTCCATGAACCAACACCAAATATGTTGGCCTATTTGAAAGAG : CATGGCAAAATTATATCAAGAGAGGAGCTAGAGAAAATTCTGGCGAAAGAGAAGACGGAAGAAATTGAG : GTGGCAGAAATTGATGAAGCTATGGCAAGAGCTGTTGACATTGGTGAAAATGAT : GATGAAGAAGAAGGAAGTGAGGCTGAAGGTGAAGAGGAGGATGAGAAAATTACACGCAATTGGAGTGTTTTGAAAAGTAATCCCGAGCTTAGCAAATCAAAG : GGTAAACCCAAAAAGAAAGACATGTCTCTGGAGGAAGCTGTAGACGATTCTGAAAATTTAACAGACTTCCTTATGGACTTTGACGAGGATGAGTGAGGCTAATGGACGCCCCAGGCTATCAAG : GATAAGCAAATTATTTTCATCCCCATCAACAAAGCTCTGTTGATTACAGCACCAGCATCTTCCCTATGATGGAGTCGATGAACATATATTGGATGATTGATACGATCTGGCAACAAGGCCAACTAACTTGGGAACGGTTTGTTGTTGATGCTGCTGTGACTCTTAAGCAGCATCTGCTGAAGATCTTCACCCCAGAAGAGTAGATTTTTTATAGAAAGCTTTGGGTATTATTTTTGTGGATGTAATTGGATTATCTTGTAAAGCAAATGAAAAATGGAGAATGCTAATGTAGTAGCTTGTATCCAGCACACAATGTGAACTTTTGAAGACGCGGTTGGTATACTAACCAGAAATTAGAAGCAG</gDNA_template>
            <first_frame> S  K  G  Q  R  I  R  G  V  I  Y  S  N  F  E  L  P  I  S  A  M  A  S  V  L  S  T  S  L  Y  Q   : D  R  G  L  R  I  V  A  S  T  D  G  F  V  P  T  I  C  C  P  Y  R  K  :  T  L  F  T  G  T  T  P  V  S  I  W  K  L  K  F  V  S  S  S  P  F  Q  K  A  P  L  A  P  C  I  K  C  E  N  K  E  K  N  Q  G  S  F  E  Q  V  S  V  E  R  F  P  Y  H  S  Y  M  D  S  T  S  G  Q  L  E  P  A  S  G  A  R  A  S  I  P  G  K  E  Y  W  P  E  G  T  A  S  R  V  Q  A  A  R  A  P  E  P  D  G  I  S  T  G  T  P  S  Y  G  K  A  P  G  S  R  R  K  K  Y  K  A  S  A  S  S  S  Q  P  S  E  I  N  V  I  S  D  D  P  L  E  T  P  D  S  V  P  E  E  P  K  D  L  S  S  E  Y  V  I  Y  Q  P  E  Q  D  E  E  E  L  T  G  Y  E  L  D  K  R  H  G  R  P  H  P  F  I  D  P  K  V  K  K  E  I  E  K  P  L  T  S  E  E  L  W  W  N  W  R  K  P  E  K  E  Q  W  S  R  W  Q  R  R  R  P  D  V  E  T  :  V  F  L  K  A  M  A  E  T  G  Q  V  K  L  Y  G  E  H  P  T  L  T  E  T  A  L  Y  R  A  R  R  H  L  Y  K  E  E  R :   L  Q  A  E  K  E  K  M  E  K  I  G  P  I  A  Y  Y  S  E  W  V  K  A  W  K  R  D  T  S  R  D  A  I  Q  K  H  F  E  E  T  G  E  D  E  N  T  Q  L  I  E  M  F  S  H  Q  T  D  R  E  Y  R  I  M  M  G  T  D  M  R  I  P  R  D  P  L  A  M  R  M  R  E  D  Q  I  K  Q   : I  W  G  G  D  P  V  Y  P  T  I  N  Y  I  Q  D  P  D  E  V  I  D  F  R  G  P  D  F  H  E  P  T  P  N  M  L  A  Y  L  K  E  :  H  G  K  I  I  S  R  E  E  L  E  K  I  L  A  K  E  K  T  E  E  I  E  :  V  A  E  I  D  E  A  M  A  R  A  V  D  I  G  E  N  D  :  D  E  E  E  G  S  E  A  E  G  E  E  E  D  E  K  I  T  R  N  W  S  V  L  K  S  N  P  E  L  S  K  S  K  :  G  K  P  K  K  K  D  M  S  L  E  E  A  V  D  D  S  E  N  L  T  D  F  L  M  D  F  D  E  D  E  *  G  *  W  T  P  Q  A  I  K  :  D  K  Q  I  I  F  I  P  I  N  K  A  L  L  I  T  A  P  A  S  S  L  *  W  S  R  *  T  Y  I  G  *  L  I  R  S  G  N  K  A  N  *  L  G  N  G  L  L  L  M  L  L  *  L  L  S  S  I  C  *  R  S  S  P  Q  K  S  R  F  F  I  E  S  F  G  Y  Y  F  C  G  C  N  W  I  I  L  *  S  K  *  K  M  E  N  A  N  V  V  A  C  I  Q  H  T  M  *  T  F  E  D  A  V  G  I  L  T  R  N  *  K  Q </first_frame>
            <second_frame>  A  K  D  K  G  *  E  E  L  F  I  A  I  S  S  C  Q  F  Q  Q  W  L  L  Y  C  Q  L  P  C  I  K  :  I  E  D  *  E  L  *  P  L  L  M  D  L  C  Q  L  F  A  A  P  I  G  R :   P  C  L  Q  V  L  L  L  F  Q  Y  G  S  S  N  L  S  P  V  V  H  F  K  R  L  L  *  L  L  V  *  S  V  R  T  R  K  R  I  R  A  L  L  S  R  C  L  S  S  V  F  L  I  T  V  I  W  T  P  L  L  G  N  L  N  Q  H  L  E  L  A  L  V  F  L  G  R  S  T  G  Q  K  A  Q  L  V  E  F  R  P  P  G  L  L  N  Q  M  V  F  Q  L  E  L  H  L  M  E  K  L  L  E  V  E  E  R  S  T  R  H  L  L  P  L  P  S  L  Q  K  S  M  *  F  L  M  I  L  W  R  L  Q  I  V  Y  Q  K  S  Q  R  I  F  P  Q  S  M  S  F  I  S  L  N  K  M  K  K  S  *  Q  A  M  S  *  I  K  D  M  D  G  P  T  H  L  L  I  Q  R  *  R  R  K  *  R  S  R  L  L  V  K  N  Y  G  G  I  G  E  S  L  K  R  S  N  G  L  G  G  R  G  G  A  L  M  L  K  R :   S  F  L  K  L  W  Q  R  Q  D  K  *  S  S  M  V  S  I  L  H  *  Q  R  L  R  S  I  E  Q  G  D  I  Y  I  R  R  K   : G  Y  R  L  K  K  K  K  W  K  R  L  V  L  L  H  T  T  Q  S  G  S  K  L  G  K  E  I  L  L  E  M  P  F  K  S  I  L  K  R  L  V  K  M  R  T  L  N  S  S  K  C  S  P  I  K  Q  I  V  N  T  G  *  *  W  E  L  I  C  V  F  L  V  T  R  W  P  *  E  C  G  R  I  K  *  N  K  :  F  G  V  E  I  Q  F  T  R  P  L  I  T  F  K  I  L  M  K  *  L  I  S  G  V  Q  T  S  M  N  Q  H  Q  I  C  W  P  I  *  K  S :   M  A  K  L  Y  Q  E  R  S  *  R  K  F  W  R  K  R  R  R  K  K  L  R :   W  Q  K  L  M  K  L  W  Q  E  L  L  T  L  V  K  M  M :   M  K  K  K  E  V  R  L  K  V  K  R  R  M  R  K  L  H  A  I  G  V  F  *  K  V  I  P  S  L  A  N  Q  R :   V  N  P  K  R  K  T  C  L  W  R  K  L  *  T  I  L  K  I  *  Q  T  S  L  W  T  L  T  R  M  S  E  A  N  G  R  P  R  L  S  R :   I  S  K  L  F  S  S  P  S  T  K  L  C  *  L  Q  H  Q  H  L  P  Y  D  G  V  D  E  H  I  L  D  D  *  Y  D  L  A  T  R  P  T  N  L  G  T  V  C  C  *  C  C  C  D  S  *  A  A  S  A  E  D  L  H  P  R  R  V  D  F  L  *  K  A  L  G  I  I  F  V  D  V  I  G  L  S  C  K  A  N  E  K  W  R  M  L  M  *  *  L  V  S  S  T  Q  C  E  L  L  K  T  R  L  V  Y  *  P  E  I  R  S   </second_frame>
            <third_frame>   Q  R  T  K  D  K  R  S  Y  L  *  Q  F  R  V  A  N  F  S  N  G  F  C  I  V  N  F  L  V  S  R :   *  R  T  E  N  C  S  L  Y  *  W  I  C  A  N  Y  L  L  P  L  S  E   : D  L  V  Y  R  Y  Y  S  C  F  N  M  E  A  Q  I  C  L  Q  *  S  I  S  K  G  S  F  S  S  L  Y  K  V  *  E  Q  G  K  E  S  G  L  F  *  A  G  V  C  R  A  F  S  L  S  Q  L  Y  G  L  H  F  W  A  T  *  T  S  I  W  S  S  R  *  Y  S  W  E  G  V  L  A  R  R  H  S  *  S  S  S  G  R  Q  G  S  *  T  R  W  Y  F  N  W  N  S  I  L  W  K  S  S  W  K  *  K  K  E  V  Q  G  I  C  F  L  F  P  A  F  R  N  Q  C  N  F  *  *  S  S  G  D  S  R  *  C  T  R  R  A  K  G  S  F  L  R  V  C  H  L  S  A  *  T  R  *  R  R  A  D  R  L  *  A  R  *  K  T  W  T  A  P  P  I  Y  *  S  K  G  K  E  G  N  R  E  A  A  Y  *  *  R  I  M  V  E  L  E  K  A  *  K  G  A  M  V  *  V  A  E  A  A  P  *  C  *  N   : G  L  S  *  S  Y  G  R  D  R  T  S  K  A  L  W  *  A  S  Y  I  D  R  D  C  A  L  *  S  K  E  T  F  I  *  G  G  K  :  A  T  G  *  K  R  K  N  G  K  D  W  S  Y  C  I  L  L  R  V  G  Q  S  L  E  K  R  Y  F  S  R  C  H  S  K  A  F  *  R  D  W  *  R  *  E  H  S  T  H  R  N  V  L  P  S  N  R  S  *  I  P  D  N  D  G  N  *  Y  A  Y  S  S  *  P  V  G  H  E  N  A  G  G  S  N  K  T  N :   L  G  W  R  S  S  L  P  D  H  *  L  H  S  R  S  *  *  S  D  *  F  Q  G  S  R  L  P  *  T  N  T  K  Y  V  G  L  F  E  R   : A  W  Q  N  Y  I  K  R  G  A  R  E  N  S  G  E  R  E  D  G  R  N  *   : G  G  R  N  *  *  S  Y  G  K  S  C  *  H  W  *  K  *   : *  *  R  R  R  K  *  G  *  R  *  R  G  G  *  E  N  Y  T  Q  L  E  C  F  E  K  *  S  R  A  *  Q  I  K   : G  *  T  Q  K  E  R  H  V  S  G  G  S  C  R  R  F  *  K  F  N  R  L  P  Y  G  L  *  R  G  *  V  R  L  M  D  A  P  G  Y  Q   : G  *  A  N  Y  F  H  P  H  Q  Q  S  S  V  D  Y  S  T  S  I  F  P  M  M  E  S  M  N  I  Y  W  M  I  D  T  I  W  Q  Q  G  Q  L  T  W  E  R  F  V  V  D  A  A  V  T  L  K  Q  H  L  L  K  I  F  T  P  E  E  *  I  F  Y  R  K  L  W  V  L  F  L  W  M  *  L  D  Y  L  V  K  Q  M  K  N  G  E  C  *  C  S  S  L  Y  P  A  H  N  V  N  F  *  R  R  G  W  Y  T  N  Q  K  L  E  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70566" stop="70473"/>
                    <exon start="70382" stop="70315"/>
                    <exon start="69463" stop="68795"/>
                    <exon start="68489" stop="68377"/>
                    <exon start="67447" stop="67188"/>
                    <exon start="66809" stop="66688"/>
                    <exon start="65356" stop="65288"/>
                    <exon start="64705" stop="64652"/>
                    <exon start="64498" stop="64397"/>
                    <exon start="63570" stop="63475"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1644</number_coding_nucleotides>
                  <number_encoded_amino_acids>548</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKGQRIRGVIYSNFELPISAMASVLSTSLYQDRGLRIVASTDGFVPTICCPYRKTLFTGTTPVSIWKLKFVSSSPFQKAPLAPCIKCENKEKNQGSFEQVSVERFPYHSYMDSTSGQLEPASGARASIPGKEYWPEGTASRVQAARAPEPDGISTGTPSYGKAPGSRRKKYKASASSSQPSEINVISDDPLETPDSVPEEPKDLSSEYVIYQPEQDEEELTGYELDKRHGRPHPFIDPKVKKEIEKPLTSEELWWNWRKPEKEQWSRWQRRRPDVETVFLKAMAETGQVKLYGEHPTLTETALYRARRHLYKEERLQAEKEKMEKIGPIAYYSEWVKAWKRDTSRDAIQKHFEETGEDENTQLIEMFSHQTDREYRIMMGTDMRIPRDPLAMRMREDQIKQIWGGDPVYPTINYIQDPDEVIDFRGPDFHEPTPNMLAYLKEHGKIISREELEKILAKEKTEEIEVAEIDEAMARAVDIGENDDEEEGSEAEGEEEDEKITRNWSVLKSNPELSKSKGKPKKKDMSLEEAVDDSENLTDFLMDFDEDE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63001" stop="62804"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ANYFHPHQQSSVDYSTSIFPMMESMNIYWMIDTIWQQGQLTWERFVVDAAVTLKQHLLKIFTPEE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="79045" PGL_stop="71586"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79045" e_stop="78573"/>
            <exon e_start="75756" e_stop="75524"/>
            <exon e_start="75063" e_stop="74773"/>
            <exon e_start="73066" e_stop="72938"/>
            <exon e_start="72842" e_stop="72669"/>
            <exon e_start="72563" e_stop="72456"/>
            <exon e_start="72361" e_stop="71800"/>
            <exon e_start="71599" e_stop="71586"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="0.998"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="0.991"/>
          <exon-intron don_prob="0.994" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.863" acc_prob="0.995" e_score="0.994"/>
          <exon-intron don_prob="0.996" acc_prob="0.668" e_score="1.000"/>
          <exon-intron don_prob="0.046" acc_prob="0.962" e_score="0.985"/>
          <exon-only e_score="0.643"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="79045" e_stop="78573" e_length="473"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="78572" i_stop="75757" i_length="2816"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="75756" e_stop="75524" e_length="233"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="75523" i_stop="75064" i_length="460"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75063" e_stop="74773" e_length="291"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.970">
            <gDNA_intron_boundary i_start="74772" i_stop="73067" i_length="1706"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="73066" e_stop="72938" e_length="129"/>
          </exon>
          <intron i_serial="4" don_prob="0.956" acc_prob="0.967">
            <gDNA_intron_boundary i_start="72937" i_stop="72843" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="72842" e_stop="72669" e_length="174"/>
          </exon>
          <intron i_serial="5" don_prob="0.863" acc_prob="0.995">
            <gDNA_intron_boundary i_start="72668" i_stop="72564" i_length="105"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="72563" e_stop="72456" e_length="108"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.668">
            <gDNA_intron_boundary i_start="72455" i_stop="72362" i_length="94"/>
          </intron>
          <exon e_serial="7" e_score="0.985">
            <gDNA_exon_boundary e_start="72361" e_stop="71800" e_length="562"/>
          </exon>
          <intron i_serial="7" don_prob="0.046" acc_prob="0.962">
            <gDNA_intron_boundary i_start="71799" i_stop="71600" i_length="200"/>
          </intron>
          <exon e_serial="8" e_score="0.643">
            <gDNA_exon_boundary e_start="71599" e_stop="71586" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79045" stop="78573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78701" stop="78573"/>
              <exon start="75756" stop="75524"/>
              <exon start="75063" stop="74890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75573" stop="75524"/>
              <exon start="75063" stop="74773"/>
              <exon start="73066" stop="72938"/>
              <exon start="72842" stop="72710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75572" stop="75524"/>
              <exon start="75063" stop="74773"/>
              <exon start="73066" stop="72938"/>
              <exon start="72842" stop="72779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75566" stop="75524"/>
              <exon start="75063" stop="74773"/>
              <exon start="73066" stop="72938"/>
              <exon start="72842" stop="72805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75566" stop="75524"/>
              <exon start="75063" stop="74773"/>
              <exon start="73066" stop="72938"/>
              <exon start="72842" stop="72805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75542" stop="75524"/>
              <exon start="75063" stop="74773"/>
              <exon start="73066" stop="72938"/>
              <exon start="72842" stop="72716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75001" stop="74773"/>
              <exon start="73066" stop="72938"/>
              <exon start="72842" stop="72669"/>
              <exon start="72563" stop="72456"/>
              <exon start="72361" stop="72351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75001" stop="74773"/>
              <exon start="73066" stop="73050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72824" stop="72669"/>
              <exon start="72563" stop="72456"/>
              <exon start="72361" stop="72189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72811" stop="72669"/>
              <exon start="72563" stop="72456"/>
              <exon start="72361" stop="71883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72292" stop="71800"/>
              <exon start="71599" stop="71586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427150" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGGACTCTAGGCTCGAAAGCTTGGGAAGAATTGGATAAATATGAGGAGAAAGGGATTGAGATGAATTCCATACTTGAGGGAAAGCCTGAATCATGTCCTTCATGGGTTTCTAGTAGTGGAGCACAAATTGCTAAAACAGATCATATGATGTTCCTACCTTGTGGGCTTGCAGCAGGTTCTTCTATAACACTTATTGGTACTCCTCGTTATGCTCATCATGAGTATGTACCACAGCTTGCCAAAATAAGGGCTGCTGATGCATTAGTCTTGGTTTCCCAATTTATGATTGAATTACAAGGTTTAAAATCTGTGGTTGGTGAGGATCCACCAAAGATTTTGCATCTGAATCCTAGAATAAGAGGAGATTGGAGCCGTCGACCAGTGATCGAACACAATACTTGCTATAGAATGCAATGGGGAACAGCTCACAGGTGTGATGGTTTGCCTTCAAAGTATGATGATGACATGCTTG : TTGATGGATATTTGAGATGTGAGAAGTGGATGCGGAATGACATTGTTGATACTCGAGAGTCGAAAATATTCTCATGGTTTGATCGATTCATTGGACGTGCAAAGAAGCCAGAGGTGACATGGCCTTTCCCATTTGTGGAGGGTAGGATGTTTGTTCTAACTATTCGTGCTGGTATTGATGGCTACCATATCAATGTTGGTGGGCGGCATGTGACTTCATTTCCATATCGAACT : GGCTTCACACTGGAAGATGCTACAGGGTTGGCAATCAGAGGTGACGTAGATATACATTCGGTTTATGCTACATCTCTTCCAACCTCTCATCCAAGTTTTTCTCCCCAAAGAGTGTTGGATTTCTCAGAGAAGTGGAAATCTCTTCCTTTACCCAAGAATCGCATTCAACTTTTCATTGGGGTGCTTTCTGCCACCAATCACTTTGCTGAGCGTATGGCAATCAGGAAAACATGGATGCAGGCTTCAGCAATCAAATCCTCAGACATAGCAGTCCGCTTCTTTGTTGCTTTG : AATCCACGAAAGGAGCTAAATGCTATATTGAAGAAGGAAGCAGATTACTTTGGGGACATTGTGATTGTCCCCTTTATCGATAGATACGAGCTAGTGGTTCTTAAAACTATTGCCATCTGCAAGTATGGG : GTTCAGAATGTGACAGCTGCATATATCATGAAATGTGACGATGATACTTTCATTAGGATAGATGCAGTCCTTAGAGAAATTCAACGTGTCCCTCCTAGACGATCTCTTTACATGGGCAATCTTAATCTCTTGCATAGACCACTTCGAACAGGAAAGTGGGCAGTAACTTTTGAG : GAGTGGCCAGAAGATGTATACCCCCCTTATGCTAATGGACCAGGATATATAATTACAAGTGATATTGCCAAACATATCACTTCTCAATATCGGAACCAAAGCTTGCGG : ATCTTCAAAATGGAGGATGTGAGCATGGGTATGTGGGTTGAGAGTTACAACAGTTCAACTCCTGTACAGTACTCTCACAACTGGAAGTTCTGTCAATATGGGTGTATGGAAGACTATTTCACGGCTCATTATCAGTCTCCACGACAGATGTTCTGTCTGTGGAACAATTTACTCAAGGGTAAGGCCCATTGCTGCAACTTCTAGAGTGATATGACCATTTTTCGCTGCTTGATGGACGCACAATTTGAATTGCATCATCTTCTTCCTGCCTTGAGATCTTACGCGAAGAAATGAAGGTGTGTGTTGTTGTATCTGTTCAGATGGCTGTTTTAGCTTAACATATGATTTAACATGGAACATTGGCCATCGCGATGGATTTGTACATCCGGATTTATATACTGTGTACTAGTCATTGTATAGGATTCATGCCTCTCCGCCTTGTACCATGAAGAAACATACAGCGATTTGATATTGAGCTGAGCCTCCCCACTATCATAATTTTGGGTTGGGGCCTTCACAGTTATGTTTGTCCTTTAACGCTATATATGAAGCTTTTCTTCTG : GTGGATAAATAAAA</gDNA_template>
            <first_frame> L  D  S  R  L  E  S  L  G  R  I  G  *  I  *  G  E  R  D  *  D  E  F  H  T  *  G  K  A  *  I  M  S  F  M  G  F  *  *  W  S  T  N  C  *  N  R  S  Y  D  V  P  T  L  W  A  C  S  R  F  F  Y  N  T  Y  W  Y  S  S  L  C  S  S  *  V  C  T  T  A  C  Q  N  K  G  C  *  C  I  S  L  G  F  P  I  Y  D  *  I  T  R  F  K  I  C  G  W  *  G  S  T  K  D  F  A  S  E  S  *  N  K  R  R  L  E  P  S  T  S  D  R  T  Q  Y  L  L  *  N  A  M  G  N  S  S  Q  V  *  W  F  A  F  K  V  *  *  *  H  A  C :   *  W  I  F  E  M  *  E  V  D  A  E  *  H  C  *  Y  S  R  V  E  N  I  L  M  V  *  S  I  H  W  T  C  K  E  A  R  G  D  M  A  F  P  I  C  G  G  *  D  V  C  S  N  Y  S  C  W  Y  *  W  L  P  Y  Q  C  W  W  A  A  C  D  F  I  S  I  S  N   : W  L  H  T  G  R  C  Y  R  V  G  N  Q  R  *  R  R  Y  T  F  G  L  C  Y  I  S  S  N  L  S  S  K  F  F  S  P  K  S  V  G  F  L  R  E  V  E  I  S  S  F  T  Q  E  S  H  S  T  F  H  W  G  A  F  C  H  Q  S  L  C  *  A  Y  G  N  Q  E  N  M  D  A  G  F  S  N  Q  I  L  R  H  S  S  P  L  L  C  C  F   : E  S  T  K  G  A  K  C  Y  I  E  E  G  S  R  L  L  W  G  H  C  D  C  P  L  Y  R  *  I  R  A  S  G  S  *  N  Y  C  H  L  Q  V  W   : G  S  E  C  D  S  C  I  Y  H  E  M  *  R  *  Y  F  H  *  D  R  C  S  P  *  R  N  S  T  C  P  S  *  T  I  S  L  H  G  Q  S  *  S  L  A  *  T  T  S  N  R  K  V  G  S  N  F  *   : G  V  A  R  R  C  I  P  P  L  C  *  W  T  R  I  Y  N  Y  K  *  Y  C  Q  T  Y  H  F  S  I  S  E  P  K  L  A   : D  L  Q  N  G  G  C  E  H  G  Y  V  G  *  E  L  Q  Q  F  N  S  C  T  V  L  S  Q  L  E  V  L  S  I  W  V  Y  G  R  L  F  H  G  S  L  S  V  S  T  T  D  V  L  S  V  E  Q  F  T  Q  G  *  G  P  L  L  Q  L  L  E  *  Y  D  H  F  S  L  L  D  G  R  T  I  *  I  A  S  S  S  S  C  L  E  I  L  R  E  E  M  K  V  C  V  V  V  S  V  Q  M  A  V  L  A  *  H  M  I  *  H  G  T  L  A  I  A  M  D  L  Y  I  R  I  Y  I  L  C  T  S  H  C  I  G  F  M  P  L  R  L  V  P  *  R  N  I  Q  R  F  D  I  E  L  S  L  P  T  I  I  I  L  G  W  G  L  H  S  Y  V  C  P  L  T  L  Y  M  K  L  F  F  W :   W  I  N  K  </first_frame>
            <second_frame>  W  T  L  G  S  K  A  W  E  E  L  D  K  Y  E  E  K  G  I  E  M  N  S  I  L  E  G  K  P  E  S  C  P  S  W  V  S  S  S  G  A  Q  I  A  K  T  D  H  M  M  F  L  P  C  G  L  A  A  G  S  S  I  T  L  I  G  T  P  R  Y  A  H  H  E  Y  V  P  Q  L  A  K  I  R  A  A  D  A  L  V  L  V  S  Q  F  M  I  E  L  Q  G  L  K  S  V  V  G  E  D  P  P  K  I  L  H  L  N  P  R  I  R  G  D  W  S  R  R  P  V  I  E  H  N  T  C  Y  R  M  Q  W  G  T  A  H  R  C  D  G  L  P  S  K  Y  D  D  D  M  L   : V  D  G  Y  L  R  C  E  K  W  M  R  N  D  I  V  D  T  R  E  S  K  I  F  S  W  F  D  R  F  I  G  R  A  K  K  P  E  V  T  W  P  F  P  F  V  E  G  R  M  F  V  L  T  I  R  A  G  I  D  G  Y  H  I  N  V  G  G  R  H  V  T  S  F  P  Y  R  T  :  G  F  T  L  E  D  A  T  G  L  A  I  R  G  D  V  D  I  H  S  V  Y  A  T  S  L  P  T  S  H  P  S  F  S  P  Q  R  V  L  D  F  S  E  K  W  K  S  L  P  L  P  K  N  R  I  Q  L  F  I  G  V  L  S  A  T  N  H  F  A  E  R  M  A  I  R  K  T  W  M  Q  A  S  A  I  K  S  S  D  I  A  V  R  F  F  V  A  L  :  N  P  R  K  E  L  N  A  I  L  K  K  E  A  D  Y  F  G  D  I  V  I  V  P  F  I  D  R  Y  E  L  V  V  L  K  T  I  A  I  C  K  Y  G  :  V  Q  N  V  T  A  A  Y  I  M  K  C  D  D  D  T  F  I  R  I  D  A  V  L  R  E  I  Q  R  V  P  P  R  R  S  L  Y  M  G  N  L  N  L  L  H  R  P  L  R  T  G  K  W  A  V  T  F  E  :  E  W  P  E  D  V  Y  P  P  Y  A  N  G  P  G  Y  I  I  T  S  D  I  A  K  H  I  T  S  Q  Y  R  N  Q  S  L  R  :  I  F  K  M  E  D  V  S  M  G  M  W  V  E  S  Y  N  S  S  T  P  V  Q  Y  S  H  N  W  K  F  C  Q  Y  G  C  M  E  D  Y  F  T  A  H  Y  Q  S  P  R  Q  M  F  C  L  W  N  N  L  L  K  G  K  A  H  C  C  N  F  *  S  D  M  T  I  F  R  C  L  M  D  A  Q  F  E  L  H  H  L  L  P  A  L  R  S  Y  A  K  K  *  R  C  V  L  L  Y  L  F  R  W  L  F  *  L  N  I  *  F  N  M  E  H  W  P  S  R  W  I  C  T  S  G  F  I  Y  C  V  L  V  I  V  *  D  S  C  L  S  A  L  Y  H  E  E  T  Y  S  D  L  I  L  S  *  A  S  P  L  S  *  F  W  V  G  A  F  T  V  M  F  V  L  *  R  Y  I  *  S  F  S  S   : G  G  *  I  K </second_frame>
            <third_frame>   G  L  *  A  R  K  L  G  K  N  W  I  N  M  R  R  K  G  L  R  *  I  P  Y  L  R  E  S  L  N  H  V  L  H  G  F  L  V  V  E  H  K  L  L  K  Q  I  I  *  C  S  Y  L  V  G  L  Q  Q  V  L  L  *  H  L  L  V  L  L  V  M  L  I  M  S  M  Y  H  S  L  P  K  *  G  L  L  M  H  *  S  W  F  P  N  L  *  L  N  Y  K  V  *  N  L  W  L  V  R  I  H  Q  R  F  C  I  *  I  L  E  *  E  E  I  G  A  V  D  Q  *  S  N  T  I  L  A  I  E  C  N  G  E  Q  L  T  G  V  M  V  C  L  Q  S  M  M  M  T  C  L  :  L  M  D  I  *  D  V  R  S  G  C  G  M  T  L  L  I  L  E  S  R  K  Y  S  H  G  L  I  D  S  L  D  V  Q  R  S  Q  R  *  H  G  L  S  H  L  W  R  V  G  C  L  F  *  L  F  V  L  V  L  M  A  T  I  S  M  L  V  G  G  M  *  L  H  F  H  I  E  L :   A  S  H  W  K  M  L  Q  G  W  Q  S  E  V  T  *  I  Y  I  R  F  M  L  H  L  F  Q  P  L  I  Q  V  F  L  P  K  E  C  W  I  S  Q  R  S  G  N  L  F  L  Y  P  R  I  A  F  N  F  S  L  G  C  F  L  P  P  I  T  L  L  S  V  W  Q  S  G  K  H  G  C  R  L  Q  Q  S  N  P  Q  T  *  Q  S  A  S  L  L  L  * :   I  H  E  R  S  *  M  L  Y  *  R  R  K  Q  I  T  L  G  T  L  *  L  S  P  L  S  I  D  T  S  *  W  F  L  K  L  L  P  S  A  S  M  G :   F  R  M  *  Q  L  H  I  S  *  N  V  T  M  I  L  S  L  G  *  M  Q  S  L  E  K  F  N  V  S  L  L  D  D  L  F  T  W  A  I  L  I  S  C  I  D  H  F  E  Q  E  S  G  Q  *  L  L  R :   S  G  Q  K  M  Y  T  P  L  M  L  M  D  Q  D  I  *  L  Q  V  I  L  P  N  I  S  L  L  N  I  G  T  K  A  C  G :   S  S  K  W  R  M  *  A  W  V  C  G  L  R  V  T  T  V  Q  L  L  Y  S  T  L  T  T  G  S  S  V  N  M  G  V  W  K  T  I  S  R  L  I  I  S  L  H  D  R  C  S  V  C  G  T  I  Y  S  R  V  R  P  I  A  A  T  S  R  V  I  *  P  F  F  A  A  *  W  T  H  N  L  N  C  I  I  F  F  L  P  *  D  L  T  R  R  N  E  G  V  C  C  C  I  C  S  D  G  C  F  S  L  T  Y  D  L  T  W  N  I  G  H  R  D  G  F  V  H  P  D  L  Y  T  V  Y  *  S  L  Y  R  I  H  A  S  P  P  C  T  M  K  K  H  T  A  I  *  Y  *  A  E  P  P  H  Y  H  N  F  G  L  G  P  S  Q  L  C  L  S  F  N  A  I  Y  E  A  F  L  L  :  V  D  K  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79044" stop="78573"/>
                    <exon start="75756" stop="75524"/>
                    <exon start="75063" stop="74773"/>
                    <exon start="73066" stop="72938"/>
                    <exon start="72842" stop="72669"/>
                    <exon start="72563" stop="72456"/>
                    <exon start="72361" stop="72158"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1608</number_coding_nucleotides>
                  <number_encoded_amino_acids>536</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WTLGSKAWEELDKYEEKGIEMNSILEGKPESCPSWVSSSGAQIAKTDHMMFLPCGLAAGSSITLIGTPRYAHHEYVPQLAKIRAADALVLVSQFMIELQGLKSVVGEDPPKILHLNPRIRGDWSRRPVIEHNTCYRMQWGTAHRCDGLPSKYDDDMLVDGYLRCEKWMRNDIVDTRESKIFSWFDRFIGRAKKPEVTWPFPFVEGRMFVLTIRAGIDGYHINVGGRHVTSFPYRTGFTLEDATGLAIRGDVDIHSVYATSLPTSHPSFSPQRVLDFSEKWKSLPLPKNRIQLFIGVLSATNHFAERMAIRKTWMQASAIKSSDIAVRFFVALNPRKELNAILKKEADYFGDIVIVPFIDRYELVVLKTIAICKYGVQNVTAAYIMKCDDDTFIRIDAVLREIQRVPPRRSLYMGNLNLLHRPLRTGKWAVTFEEWPEDVYPPYANGPGYIITSDIAKHITSQYRNQSLRIFKMEDVSMGMWVESYNSSTPVQYSHNWKFCQYGCMEDYFTAHYQSPRQMFCLWNNLLKGKAHCCNF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="79045" e_stop="78573"/>
            <exon e_start="75756" e_stop="75524"/>
            <exon e_start="75063" e_stop="74773"/>
            <exon e_start="73066" e_stop="72938"/>
            <exon e_start="72842" e_stop="72669"/>
            <exon e_start="72563" e_stop="72456"/>
            <exon e_start="72361" e_stop="71787"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="0.998"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="0.991"/>
          <exon-intron don_prob="0.994" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.863" acc_prob="0.995" e_score="0.994"/>
          <exon-intron don_prob="0.996" acc_prob="0.668" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="79045" e_stop="78573" e_length="473"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="78572" i_stop="75757" i_length="2816"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="75756" e_stop="75524" e_length="233"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="75523" i_stop="75064" i_length="460"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75063" e_stop="74773" e_length="291"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.970">
            <gDNA_intron_boundary i_start="74772" i_stop="73067" i_length="1706"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="73066" e_stop="72938" e_length="129"/>
          </exon>
          <intron i_serial="4" don_prob="0.956" acc_prob="0.967">
            <gDNA_intron_boundary i_start="72937" i_stop="72843" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="72842" e_stop="72669" e_length="174"/>
          </exon>
          <intron i_serial="5" don_prob="0.863" acc_prob="0.995">
            <gDNA_intron_boundary i_start="72668" i_stop="72564" i_length="105"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="72563" e_stop="72456" e_length="108"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.668">
            <gDNA_intron_boundary i_start="72455" i_stop="72362" i_length="94"/>
          </intron>
          <exon e_serial="7" e_score="0.985">
            <gDNA_exon_boundary e_start="72361" e_stop="71787" e_length="575"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79045" stop="78573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78701" stop="78573"/>
              <exon start="75756" stop="75524"/>
              <exon start="75063" stop="74890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75573" stop="75524"/>
              <exon start="75063" stop="74773"/>
              <exon start="73066" stop="72938"/>
              <exon start="72842" stop="72710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75572" stop="75524"/>
              <exon start="75063" stop="74773"/>
              <exon start="73066" stop="72938"/>
              <exon start="72842" stop="72779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75566" stop="75524"/>
              <exon start="75063" stop="74773"/>
              <exon start="73066" stop="72938"/>
              <exon start="72842" stop="72805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75566" stop="75524"/>
              <exon start="75063" stop="74773"/>
              <exon start="73066" stop="72938"/>
              <exon start="72842" stop="72805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75542" stop="75524"/>
              <exon start="75063" stop="74773"/>
              <exon start="73066" stop="72938"/>
              <exon start="72842" stop="72716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75001" stop="74773"/>
              <exon start="73066" stop="72938"/>
              <exon start="72842" stop="72669"/>
              <exon start="72563" stop="72456"/>
              <exon start="72361" stop="72351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75001" stop="74773"/>
              <exon start="73066" stop="73050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72824" stop="72669"/>
              <exon start="72563" stop="72456"/>
              <exon start="72361" stop="72189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72811" stop="72669"/>
              <exon start="72563" stop="72456"/>
              <exon start="72361" stop="71883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72292" stop="71787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485326" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGGACTCTAGGCTCGAAAGCTTGGGAAGAATTGGATAAATATGAGGAGAAAGGGATTGAGATGAATTCCATACTTGAGGGAAAGCCTGAATCATGTCCTTCATGGGTTTCTAGTAGTGGAGCACAAATTGCTAAAACAGATCATATGATGTTCCTACCTTGTGGGCTTGCAGCAGGTTCTTCTATAACACTTATTGGTACTCCTCGTTATGCTCATCATGAGTATGTACCACAGCTTGCCAAAATAAGGGCTGCTGATGCATTAGTCTTGGTTTCCCAATTTATGATTGAATTACAAGGTTTAAAATCTGTGGTTGGTGAGGATCCACCAAAGATTTTGCATCTGAATCCTAGAATAAGAGGAGATTGGAGCCGTCGACCAGTGATCGAACACAATACTTGCTATAGAATGCAATGGGGAACAGCTCACAGGTGTGATGGTTTGCCTTCAAAGTATGATGATGACATGCTTG : TTGATGGATATTTGAGATGTGAGAAGTGGATGCGGAATGACATTGTTGATACTCGAGAGTCGAAAATATTCTCATGGTTTGATCGATTCATTGGACGTGCAAAGAAGCCAGAGGTGACATGGCCTTTCCCATTTGTGGAGGGTAGGATGTTTGTTCTAACTATTCGTGCTGGTATTGATGGCTACCATATCAATGTTGGTGGGCGGCATGTGACTTCATTTCCATATCGAACT : GGCTTCACACTGGAAGATGCTACAGGGTTGGCAATCAGAGGTGACGTAGATATACATTCGGTTTATGCTACATCTCTTCCAACCTCTCATCCAAGTTTTTCTCCCCAAAGAGTGTTGGATTTCTCAGAGAAGTGGAAATCTCTTCCTTTACCCAAGAATCGCATTCAACTTTTCATTGGGGTGCTTTCTGCCACCAATCACTTTGCTGAGCGTATGGCAATCAGGAAAACATGGATGCAGGCTTCAGCAATCAAATCCTCAGACATAGCAGTCCGCTTCTTTGTTGCTTTG : AATCCACGAAAGGAGCTAAATGCTATATTGAAGAAGGAAGCAGATTACTTTGGGGACATTGTGATTGTCCCCTTTATCGATAGATACGAGCTAGTGGTTCTTAAAACTATTGCCATCTGCAAGTATGGG : GTTCAGAATGTGACAGCTGCATATATCATGAAATGTGACGATGATACTTTCATTAGGATAGATGCAGTCCTTAGAGAAATTCAACGTGTCCCTCCTAGACGATCTCTTTACATGGGCAATCTTAATCTCTTGCATAGACCACTTCGAACAGGAAAGTGGGCAGTAACTTTTGAG : GAGTGGCCAGAAGATGTATACCCCCCTTATGCTAATGGACCAGGATATATAATTACAAGTGATATTGCCAAACATATCACTTCTCAATATCGGAACCAAAGCTTGCGG : ATCTTCAAAATGGAGGATGTGAGCATGGGTATGTGGGTTGAGAGTTACAACAGTTCAACTCCTGTACAGTACTCTCACAACTGGAAGTTCTGTCAATATGGGTGTATGGAAGACTATTTCACGGCTCATTATCAGTCTCCACGACAGATGTTCTGTCTGTGGAACAATTTACTCAAGGGTAAGGCCCATTGCTGCAACTTCTAGAGTGATATGACCATTTTTCGCTGCTTGATGGACGCACAATTTGAATTGCATCATCTTCTTCCTGCCTTGAGATCTTACGCGAAGAAATGAAGGTGTGTGTTGTTGTATCTGTTCAGATGGCTGTTTTAGCTTAACATATGATTTAACATGGAACATTGGCCATCGCGATGGATTTGTACATCCGGATTTATATACTGTGTACTAGTCATTGTATAGGATTCATGCCTCTCCGCCTTGTACCATGAAGAAACATACAGCGATTTGATATTGAGCTGAGCCTCCCCACTATCATAATTTTGGGTTGGGGCCTTCACAGTTATGTTTGTCCTTTAACGCTATATATGAAGCTTTTCTTCTGGCAATGTCAACAT</gDNA_template>
            <first_frame> L  D  S  R  L  E  S  L  G  R  I  G  *  I  *  G  E  R  D  *  D  E  F  H  T  *  G  K  A  *  I  M  S  F  M  G  F  *  *  W  S  T  N  C  *  N  R  S  Y  D  V  P  T  L  W  A  C  S  R  F  F  Y  N  T  Y  W  Y  S  S  L  C  S  S  *  V  C  T  T  A  C  Q  N  K  G  C  *  C  I  S  L  G  F  P  I  Y  D  *  I  T  R  F  K  I  C  G  W  *  G  S  T  K  D  F  A  S  E  S  *  N  K  R  R  L  E  P  S  T  S  D  R  T  Q  Y  L  L  *  N  A  M  G  N  S  S  Q  V  *  W  F  A  F  K  V  *  *  *  H  A  C :   *  W  I  F  E  M  *  E  V  D  A  E  *  H  C  *  Y  S  R  V  E  N  I  L  M  V  *  S  I  H  W  T  C  K  E  A  R  G  D  M  A  F  P  I  C  G  G  *  D  V  C  S  N  Y  S  C  W  Y  *  W  L  P  Y  Q  C  W  W  A  A  C  D  F  I  S  I  S  N   : W  L  H  T  G  R  C  Y  R  V  G  N  Q  R  *  R  R  Y  T  F  G  L  C  Y  I  S  S  N  L  S  S  K  F  F  S  P  K  S  V  G  F  L  R  E  V  E  I  S  S  F  T  Q  E  S  H  S  T  F  H  W  G  A  F  C  H  Q  S  L  C  *  A  Y  G  N  Q  E  N  M  D  A  G  F  S  N  Q  I  L  R  H  S  S  P  L  L  C  C  F   : E  S  T  K  G  A  K  C  Y  I  E  E  G  S  R  L  L  W  G  H  C  D  C  P  L  Y  R  *  I  R  A  S  G  S  *  N  Y  C  H  L  Q  V  W   : G  S  E  C  D  S  C  I  Y  H  E  M  *  R  *  Y  F  H  *  D  R  C  S  P  *  R  N  S  T  C  P  S  *  T  I  S  L  H  G  Q  S  *  S  L  A  *  T  T  S  N  R  K  V  G  S  N  F  *   : G  V  A  R  R  C  I  P  P  L  C  *  W  T  R  I  Y  N  Y  K  *  Y  C  Q  T  Y  H  F  S  I  S  E  P  K  L  A   : D  L  Q  N  G  G  C  E  H  G  Y  V  G  *  E  L  Q  Q  F  N  S  C  T  V  L  S  Q  L  E  V  L  S  I  W  V  Y  G  R  L  F  H  G  S  L  S  V  S  T  T  D  V  L  S  V  E  Q  F  T  Q  G  *  G  P  L  L  Q  L  L  E  *  Y  D  H  F  S  L  L  D  G  R  T  I  *  I  A  S  S  S  S  C  L  E  I  L  R  E  E  M  K  V  C  V  V  V  S  V  Q  M  A  V  L  A  *  H  M  I  *  H  G  T  L  A  I  A  M  D  L  Y  I  R  I  Y  I  L  C  T  S  H  C  I  G  F  M  P  L  R  L  V  P  *  R  N  I  Q  R  F  D  I  E  L  S  L  P  T  I  I  I  L  G  W  G  L  H  S  Y  V  C  P  L  T  L  Y  M  K  L  F  F  W  Q  C  Q  H </first_frame>
            <second_frame>  W  T  L  G  S  K  A  W  E  E  L  D  K  Y  E  E  K  G  I  E  M  N  S  I  L  E  G  K  P  E  S  C  P  S  W  V  S  S  S  G  A  Q  I  A  K  T  D  H  M  M  F  L  P  C  G  L  A  A  G  S  S  I  T  L  I  G  T  P  R  Y  A  H  H  E  Y  V  P  Q  L  A  K  I  R  A  A  D  A  L  V  L  V  S  Q  F  M  I  E  L  Q  G  L  K  S  V  V  G  E  D  P  P  K  I  L  H  L  N  P  R  I  R  G  D  W  S  R  R  P  V  I  E  H  N  T  C  Y  R  M  Q  W  G  T  A  H  R  C  D  G  L  P  S  K  Y  D  D  D  M  L   : V  D  G  Y  L  R  C  E  K  W  M  R  N  D  I  V  D  T  R  E  S  K  I  F  S  W  F  D  R  F  I  G  R  A  K  K  P  E  V  T  W  P  F  P  F  V  E  G  R  M  F  V  L  T  I  R  A  G  I  D  G  Y  H  I  N  V  G  G  R  H  V  T  S  F  P  Y  R  T  :  G  F  T  L  E  D  A  T  G  L  A  I  R  G  D  V  D  I  H  S  V  Y  A  T  S  L  P  T  S  H  P  S  F  S  P  Q  R  V  L  D  F  S  E  K  W  K  S  L  P  L  P  K  N  R  I  Q  L  F  I  G  V  L  S  A  T  N  H  F  A  E  R  M  A  I  R  K  T  W  M  Q  A  S  A  I  K  S  S  D  I  A  V  R  F  F  V  A  L  :  N  P  R  K  E  L  N  A  I  L  K  K  E  A  D  Y  F  G  D  I  V  I  V  P  F  I  D  R  Y  E  L  V  V  L  K  T  I  A  I  C  K  Y  G  :  V  Q  N  V  T  A  A  Y  I  M  K  C  D  D  D  T  F  I  R  I  D  A  V  L  R  E  I  Q  R  V  P  P  R  R  S  L  Y  M  G  N  L  N  L  L  H  R  P  L  R  T  G  K  W  A  V  T  F  E  :  E  W  P  E  D  V  Y  P  P  Y  A  N  G  P  G  Y  I  I  T  S  D  I  A  K  H  I  T  S  Q  Y  R  N  Q  S  L  R  :  I  F  K  M  E  D  V  S  M  G  M  W  V  E  S  Y  N  S  S  T  P  V  Q  Y  S  H  N  W  K  F  C  Q  Y  G  C  M  E  D  Y  F  T  A  H  Y  Q  S  P  R  Q  M  F  C  L  W  N  N  L  L  K  G  K  A  H  C  C  N  F  *  S  D  M  T  I  F  R  C  L  M  D  A  Q  F  E  L  H  H  L  L  P  A  L  R  S  Y  A  K  K  *  R  C  V  L  L  Y  L  F  R  W  L  F  *  L  N  I  *  F  N  M  E  H  W  P  S  R  W  I  C  T  S  G  F  I  Y  C  V  L  V  I  V  *  D  S  C  L  S  A  L  Y  H  E  E  T  Y  S  D  L  I  L  S  *  A  S  P  L  S  *  F  W  V  G  A  F  T  V  M  F  V  L  *  R  Y  I  *  S  F  S  S  G  N  V  N   </second_frame>
            <third_frame>   G  L  *  A  R  K  L  G  K  N  W  I  N  M  R  R  K  G  L  R  *  I  P  Y  L  R  E  S  L  N  H  V  L  H  G  F  L  V  V  E  H  K  L  L  K  Q  I  I  *  C  S  Y  L  V  G  L  Q  Q  V  L  L  *  H  L  L  V  L  L  V  M  L  I  M  S  M  Y  H  S  L  P  K  *  G  L  L  M  H  *  S  W  F  P  N  L  *  L  N  Y  K  V  *  N  L  W  L  V  R  I  H  Q  R  F  C  I  *  I  L  E  *  E  E  I  G  A  V  D  Q  *  S  N  T  I  L  A  I  E  C  N  G  E  Q  L  T  G  V  M  V  C  L  Q  S  M  M  M  T  C  L  :  L  M  D  I  *  D  V  R  S  G  C  G  M  T  L  L  I  L  E  S  R  K  Y  S  H  G  L  I  D  S  L  D  V  Q  R  S  Q  R  *  H  G  L  S  H  L  W  R  V  G  C  L  F  *  L  F  V  L  V  L  M  A  T  I  S  M  L  V  G  G  M  *  L  H  F  H  I  E  L :   A  S  H  W  K  M  L  Q  G  W  Q  S  E  V  T  *  I  Y  I  R  F  M  L  H  L  F  Q  P  L  I  Q  V  F  L  P  K  E  C  W  I  S  Q  R  S  G  N  L  F  L  Y  P  R  I  A  F  N  F  S  L  G  C  F  L  P  P  I  T  L  L  S  V  W  Q  S  G  K  H  G  C  R  L  Q  Q  S  N  P  Q  T  *  Q  S  A  S  L  L  L  * :   I  H  E  R  S  *  M  L  Y  *  R  R  K  Q  I  T  L  G  T  L  *  L  S  P  L  S  I  D  T  S  *  W  F  L  K  L  L  P  S  A  S  M  G :   F  R  M  *  Q  L  H  I  S  *  N  V  T  M  I  L  S  L  G  *  M  Q  S  L  E  K  F  N  V  S  L  L  D  D  L  F  T  W  A  I  L  I  S  C  I  D  H  F  E  Q  E  S  G  Q  *  L  L  R :   S  G  Q  K  M  Y  T  P  L  M  L  M  D  Q  D  I  *  L  Q  V  I  L  P  N  I  S  L  L  N  I  G  T  K  A  C  G :   S  S  K  W  R  M  *  A  W  V  C  G  L  R  V  T  T  V  Q  L  L  Y  S  T  L  T  T  G  S  S  V  N  M  G  V  W  K  T  I  S  R  L  I  I  S  L  H  D  R  C  S  V  C  G  T  I  Y  S  R  V  R  P  I  A  A  T  S  R  V  I  *  P  F  F  A  A  *  W  T  H  N  L  N  C  I  I  F  F  L  P  *  D  L  T  R  R  N  E  G  V  C  C  C  I  C  S  D  G  C  F  S  L  T  Y  D  L  T  W  N  I  G  H  R  D  G  F  V  H  P  D  L  Y  T  V  Y  *  S  L  Y  R  I  H  A  S  P  P  C  T  M  K  K  H  T  A  I  *  Y  *  A  E  P  P  H  Y  H  N  F  G  L  G  P  S  Q  L  C  L  S  F  N  A  I  Y  E  A  F  L  L  A  M  S  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79044" stop="78573"/>
                    <exon start="75756" stop="75524"/>
                    <exon start="75063" stop="74773"/>
                    <exon start="73066" stop="72938"/>
                    <exon start="72842" stop="72669"/>
                    <exon start="72563" stop="72456"/>
                    <exon start="72361" stop="72158"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1608</number_coding_nucleotides>
                  <number_encoded_amino_acids>536</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WTLGSKAWEELDKYEEKGIEMNSILEGKPESCPSWVSSSGAQIAKTDHMMFLPCGLAAGSSITLIGTPRYAHHEYVPQLAKIRAADALVLVSQFMIELQGLKSVVGEDPPKILHLNPRIRGDWSRRPVIEHNTCYRMQWGTAHRCDGLPSKYDDDMLVDGYLRCEKWMRNDIVDTRESKIFSWFDRFIGRAKKPEVTWPFPFVEGRMFVLTIRAGIDGYHINVGGRHVTSFPYRTGFTLEDATGLAIRGDVDIHSVYATSLPTSHPSFSPQRVLDFSEKWKSLPLPKNRIQLFIGVLSATNHFAERMAIRKTWMQASAIKSSDIAVRFFVALNPRKELNAILKKEADYFGDIVIVPFIDRYELVVLKTIAICKYGVQNVTAAYIMKCDDDTFIRIDAVLREIQRVPPRRSLYMGNLNLLHRPLRTGKWAVTFEEWPEDVYPPYANGPGYIITSDIAKHITSQYRNQSLRIFKMEDVSMGMWVESYNSSTPVQYSHNWKFCQYGCMEDYFTAHYQSPRQMFCLWNNLLKGKAHCCNF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="87184" PGL_stop="84929"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87184" e_stop="86793"/>
            <exon e_start="85976" e_stop="85842"/>
            <exon e_start="85731" e_stop="85654"/>
            <exon e_start="84997" e_stop="84929"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="0.997"/>
          <exon-intron don_prob="0.957" acc_prob="0.986" e_score="0.993"/>
          <exon-intron don_prob="0.950" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="87184" e_stop="86793" e_length="392"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="86792" i_stop="85977" i_length="816"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="85976" e_stop="85842" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.957" acc_prob="0.986">
            <gDNA_intron_boundary i_start="85841" i_stop="85732" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85731" e_stop="85654" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="0.950" acc_prob="0.986">
            <gDNA_intron_boundary i_start="85653" i_stop="84998" i_length="656"/>
          </intron>
          <exon e_serial="4" e_score="0.971">
            <gDNA_exon_boundary e_start="84997" e_stop="84929" e_length="69"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87184" stop="86793"/>
              <exon start="85976" stop="85842"/>
              <exon start="85731" stop="85654"/>
              <exon start="84997" stop="84929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87184" stop="86793"/>
              <exon start="85976" stop="85857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203148" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACACAATTTATAGCAAATATGATCAACGATCATTTTCTAATGAGTTTAATACAACAAACATCAGATTTCATTGATTTAGTGAAAACAAAATCAATCGAAGTCGTGGCACAACACGATGAACGTTTATTAATAACAATTTTAATGTTATTATTTGTGTGTTATATATTAATATTTTTTTCAGGTCGTTTATGGAAGAAGAGAAAAAATAAAAAATTGAAAAAAGTATTAACAAGATCAATGTCAATTGGACTTTTACATGGAGGTGAATTGGCTCTAAAAAGGTTAATTGATTATCATAAAGCTAAGGCTGATTTTATATCATTGAATTCAGCTGAGACAGATCTTGATGCTTTGCTCAATGAGGAGCAACCCCATTTCAAGAAACTACAA : AGGTGTATTGCAAAGATGGAAATGAGTGGAAAAGAAAGCCAAGCAGTGAGGAAATTAGAGAATGCAATAAAAAATGCTGAACCACATAAAGCTTATGAGTTTGAAATGCAACTTGTGGAAACACTTATTTACCAG : GGAGAATACAATAACGCCCTACGTTGCAAATGTTTAGACGAAAAATTAATTACCGATGCAAGGCGTCCACTTTATAAG : GCTATAATATACATCTCACTTGGGAGCCGTAGAAATGAAGAAGAAGCCGTAAATTACTGGAAAGAATTC</gDNA_template>
            <first_frame> S  H  N  L  *  Q  I  *  S  T  I  I  F  *  *  V  *  Y  N  K  H  Q  I  S  L  I  *  *  K  Q  N  Q  S  K  S  W  H  N  T  M  N  V  Y  *  *  Q  F  *  C  Y  Y  L  C  V  I  Y  *  Y  F  F  Q  V  V  Y  G  R  R  E  K  I  K  N  *  K  K  Y  *  Q  D  Q  C  Q  L  D  F  Y  M  E  V  N  W  L  *  K  G  *  L  I  I  I  K  L  R  L  I  L  Y  H  *  I  Q  L  R  Q  I  L  M  L  C  S  M  R  S  N  P  I  S  R  N  Y  K :   G  V  L  Q  R  W  K  *  V  E  K  K  A  K  Q  *  G  N  *  R  M  Q  *  K  M  L  N  H  I  K  L  M  S  L  K  C  N  L  W  K  H  L  F  T  R :   E  N  T  I  T  P  Y  V  A  N  V  *  T  K  N  *  L  P  M  Q  G  V  H  F  I  R :   L  *  Y  T  S  H  L  G  A  V  E  M  K  K  K  P  *  I  T  G  K  N   </first_frame>
            <second_frame>  H  T  I  Y  S  K  Y  D  Q  R  S  F  S  N  E  F  N  T  T  N  I  R  F  H  *  F  S  E  N  K  I  N  R  S  R  G  T  T  R  *  T  F  I  N  N  N  F  N  V  I  I  C  V  L  Y  I  N  I  F  F  R  S  F  M  E  E  E  K  K  *  K  I  E  K  S  I  N  K  I  N  V  N  W  T  F  T  W  R  *  I  G  S  K  K  V  N  *  L  S  *  S  *  G  *  F  Y  I  I  E  F  S  *  D  R  S  *  C  F  A  Q  *  G  A  T  P  F  Q  E  T  T   : K  V  Y  C  K  D  G  N  E  W  K  R  K  P  S  S  E  E  I  R  E  C  N  K  K  C  *  T  T  *  S  L  *  V  *  N  A  T  C  G  N  T  Y  L  P   : G  R  I  Q  *  R  P  T  L  Q  M  F  R  R  K  I  N  Y  R  C  K  A  S  T  L  *   : G  Y  N  I  H  L  T  W  E  P  *  K  *  R  R  S  R  K  L  L  E  R  I  </second_frame>
            <third_frame>   T  Q  F  I  A  N  M  I  N  D  H  F  L  M  S  L  I  Q  Q  T  S  D  F  I  D  L  V  K  T  K  S  I  E  V  V  A  Q  H  D  E  R  L  L  I  T  I  L  M  L  L  F  V  C  Y  I  L  I  F  F  S  G  R  L  W  K  K  R  K  N  K  K  L  K  K  V  L  T  R  S  M  S  I  G  L  L  H  G  G  E  L  A  L  K  R  L  I  D  Y  H  K  A  K  A  D  F  I  S  L  N  S  A  E  T  D  L  D  A  L  L  N  E  E  Q  P  H  F  K  K  L  Q  :  R  C  I  A  K  M  E  M  S  G  K  E  S  Q  A  V  R  K  L  E  N  A  I  K  N  A  E  P  H  K  A  Y  E  F  E  M  Q  L  V  E  T  L  I  Y  Q  :  G  E  Y  N  N  A  L  R  C  K  C  L  D  E  K  L  I  T  D  A  R  R  P  L  Y  K  :  A  I  I  Y  I  S  L  G  S  R  R  N  E  E  E  A  V  N  Y  W  K  E  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87182" stop="86793"/>
                    <exon start="85976" stop="85842"/>
                    <exon start="85731" stop="85654"/>
                    <exon start="84997" stop="84929"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>672</number_coding_nucleotides>
                  <number_encoded_amino_acids>224</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TQFIANMINDHFLMSLIQQTSDFIDLVKTKSIEVVAQHDERLLITILMLLFVCYILIFFSGRLWKKRKNKKLKKVLTRSMSIGLLHGGELALKRLIDYHKAKADFISLNSAETDLDALLNEEQPHFKKLQRCIAKMEMSGKESQAVRKLENAIKNAEPHKAYEFEMQLVETLIYQGEYNNALRCKCLDEKLITDARRPLYKAIIYISLGSRRNEEEAVNYWKEF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="86806" PGL_stop="87184"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86806" e_stop="87184"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="86806" e_stop="87184" e_length="379"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86806" stop="87184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277130" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATGGGGTTGCTCCTCATTGAGCAAAGCATCAAGATCTGTCTCAGCTGAATTCAATGATATAAAATCAGCCTTAGCTTTATGATAATCAATTAACCTTTTTAGAGCCAATTCACCTCCATGTAAAAGTCCAATTGACATTGATCTTGTTAATACTTTTTTCAATTTTTTATTTTTTCTCTTCTTCCATAAACGACCTGAAAAAAATATTAATATATAACACACAAATAATAACATTAAAATTGTTATTAATAAACGTTCATCGTGTTGTGCCACGACTTCGATTGATTTTGTTTTCACTAAATCAATGAAATCTGATGTTTGTTGTATTAAACTCATTAGAAAATGATCGTTGATCATATTTGCTATAAATTGTGTGA</gDNA_template>
            <first_frame> K  W  G  C  S  S  L  S  K  A  S  R  S  V  S  A  E  F  N  D  I  K  S  A  L  A  L  *  *  S  I  N  L  F  R  A  N  S  P  P  C  K  S  P  I  D  I  D  L  V  N  T  F  F  N  F  L  F  F  L  F  F  H  K  R  P  E  K  N  I  N  I  *  H  T  N  N  N  I  K  I  V  I  N  K  R  S  S  C  C  A  T  T  S  I  D  F  V  F  T  K  S  M  K  S  D  V  C  C  I  K  L  I  R  K  *  S  L  I  I  F  A  I  N  C  V  </first_frame>
            <second_frame>  N  G  V  A  P  H  *  A  K  H  Q  D  L  S  Q  L  N  S  M  I  *  N  Q  P  *  L  Y  D  N  Q  L  T  F  L  E  P  I  H  L  H  V  K  V  Q  L  T  L  I  L  L  I  L  F  S  I  F  Y  F  F  S  S  S  I  N  D  L  K  K  I  L  I  Y  N  T  Q  I  I  T  L  K  L  L  L  I  N  V  H  R  V  V  P  R  L  R  L  I  L  F  S  L  N  Q  *  N  L  M  F  V  V  L  N  S  L  E  N  D  R  *  S  Y  L  L  *  I  V  * </second_frame>
            <third_frame>   M  G  L  L  L  I  E  Q  S  I  K  I  C  L  S  *  I  Q  *  Y  K  I  S  L  S  F  M  I  I  N  *  P  F  *  S  Q  F  T  S  M  *  K  S  N  *  H  *  S  C  *  Y  F  F  Q  F  F  I  F  S  L  L  P  *  T  T  *  K  K  Y  *  Y  I  T  H  K  *  *  H  *  N  C  Y  *  *  T  F  I  V  L  C  H  D  F  D  *  F  C  F  H  *  I  N  E  I  *  C  L  L  Y  *  T  H  *  K  M  I  V  D  H  I  C  Y  K  L  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0064G08.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86882" stop="87115"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYDNQLTFLEPIHLHVKVQLTLILLILFSIFYFFSSSINDLKKILIYNTQIITLKLLLINVHRVVPRLRLILFSLNQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 657 chains have been computed
$ 
$ memory statistics:
$ 2364464 bytes spliced alignments in total
$ 454 spliced alignments have been stored
$ 5208 bytes was the average size of a spliced alignment
$ 37048 bytes predicted gene locations in total
$ 18 predicted gene locations have been stored
$ 2058 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 691 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:33:45
-->
