<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2006-11-17 22:10:29"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E255438" ref_strand="+" ref_description="SGN-E255438 	[cLEG-30-C11]">
      <seq>ctcgatgaagagacattaatgagaattgttcctttctggagaacgtccctcagagatacaaatactccaagtcaaaagtattacattgatcattttgagatacatcctgttaaggttgtggcaagctttcttccaggggaatcttatgctaaccatagctccacgcaagagacactaagatctttacttcacagtgttataaagatacctcctgtcaaaaatatgaccgtagagctcaatggcatccttgtaactcatgcattggtcactttgcgggagttgtcaattaaatgtgcccaacattattcttggtatgcaatgagagcagtatacattgcaaagggaagtcccttgctgccaccagcttttgcttctatatttgacgacttagcttcatcatctctggatgttttctttgatccttctactggccatcttaatcttcctggcctcacaattggtactttcaaactcattcgtaagtgtattgatggtaaagagttttctggaacaaaaagatactttggcgatctagggaaaacttttaagtcagcaggatcaaatatcctgtttgctgctgtcactgaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="8349" stop="11087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8649" g_stop="8762" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8763" i_stop="8863" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.652" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8864" g_stop="8953" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="204" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8954" i_stop="9385" i_length="432">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9386" g_stop="9492" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="311" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9493" i_stop="9572" i_length="80">
            <donor d_prob="0.829" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9573" g_stop="9721" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="460" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9722" i_stop="10572" i_length="851">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10573" g_stop="10655" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="543" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="10656" i_stop="10739" i_length="84">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.752" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="10740" g_stop="10787" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="591" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E255438" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8649" e_stop="8762"/>
          <exon e_start="8864" e_stop="8953"/>
          <exon e_start="9386" e_stop="9492"/>
          <exon e_start="9573" e_stop="9721"/>
          <exon e_start="10573" e_stop="10655"/>
          <exon e_start="10740" e_stop="10787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGATGAAGAGACATTAATGAGAATTGTTCCTTTCTGGAGAACGTCCCTCAGAGATACAAATACTCCAAGTCAAAAGTATTACATTGATCATTTTGAGATACATCCTGTTAAGGTGTCTACAGAACTTTGGTTTCACTATGCGCCCCTTCCCAAGGAAGTTATTTTATCACCAAGAATTAACTCGCGTTTTCTATCCTAATAATGTTCCTAAAGGTTGTGGCAAGCTTTCTTCCAGGGGAATCTTATGCTAACCATAGCTCCACGCAAGAGACACTAAGATCTTTACTTCACAGTGTTATAAAGGTCTGATACATAGTACTTCCTCTGTCCCTTTTACGTGACACCATTTGAGTGGAATGGAGTTTAATATGTTAAGATGGCTTCTATATCACATTAAGAGAGTAGTTGAAAAGTTAGTTTCAGAGAGAACACAATATTATAGTTCAAAATTTGAACTCTTGAAACTTGTGATAGTTGAAAACAAAAATGAAGCTAATTTACTGTTCTTGTCATTATATCTATAATTGCTTCCAATAATTATGAATATATAGTGAATTTCTTGCGGAAGCCACTACTAGGATGATGTCAACTTGTCCCAGGATGGAAGGATATAATGTCAATTGATGAGGGAATATTAAAATTCATTACAGTTGTTCATACTTACTATTTGAGCAAAGGTCTTTTCTTGATTATACCTGTGGTGTAACATTCTGTTTCCGATATCTGCATTTTTAGATACCTCCTGTCAAAAATATGACCGTAGAGCTCAATGGCATCCTTGTAACTCATGCATTGGTCACTTTGCGGGAGTTGTCAATTAAATGTGCCCAACATTATTCTTGGTAAGCCTGTGTTTACTTGTTTGGCTTATGTTCTCAATAATTATTGCTCAATAGTAGCTGAAAATTGCCATTCACTCTAGGTATGCAATGAGAGCAGTATACATTGCAAAGGGAAGTCCCTTGCTGCCACCAGCTTTTGCTTCTATATTTGACGACTTAGCTTCATCATCTCTGGATGTTTTCTTTGATCCTTCTACTGGCCATCTTAATCTTCCTGGCCTCACAATTGGTATGCCCATGAAAACTCCGAAATCCTTGGCTTACTGCTTGATGCATCCATGTTTAGACTTAAGATGAGTACTGCTCATTTACGTGACCTGTGCTTCCATGGACAAGCATTTATGTGGCTAATCTCCTTTGATGCAGTGATGCTTTTACGGGGTCTTTTGTTCCAGCCCCTACTGAATTTGCCTTTGCATCAGAATACCAGGAAACGAATACTTCATGTGAAATTTAAGAAAAACTGTGTGTTTAATGGGAGACTATTTGAATATTACTGTCTTCTTATTTTGGGTTAACTTGCCTTTGCAAGGTGTGCTTCTTAGTGGAAATGATCTTGTGTTGGGGGCTGTTTTGGTACGCCATAAATCTTGTCAAAACTGAAACCTTTTTAGCAACATTATCATACTGAAGTGGCGTATTAGGCATAGGCAAGTGAAAACAGCTTGTATGTCAAGGCAAAATTGTGCATTGCTAACTCTGCCCATTTTCTTGAGCGCCTATGACGCAGAAAGTTCTTCGAATTAATGTTTAATGAGATAATTTGTAACTTAATCCAATCCAACCTGATAACTAGATAAATCTAAATCAAGGAGAGTTTTCAAACCATAAAACAGCTCGAACATTTGAATTCCAGTGCAAATAGATTATAGGATGTCAGACTTCTATGCAGTACTTTATACCCAACTCTCATGAGAGTAATGATATCAGCTGCTTTTCCGGTTCAATTTGCTTTATGATGAAGAATTAGTATGACAATCTTTGCTGCAGGTCTCTTGGAATTCACTGGCAAGTATGACTTTTCCCCTTTTATTTATGTATGTTTCCTTATCAAAGTCTCTGCTTACCTTTTGGATGAAGGTACTTTCAAACTCATTCGTAAGTGTATTGATGGTAAAGAGTTTTCTGGAACAAAAAGATACTTTGGCGATCTAGGGAAAACTGTAAGTTATATATTTTTGTTGATTTTTTTGTTCATGGTTGATTTGCAATTGTCAATGACGCTGCAAAGGGTGTTTCATATGCAGTTTAAGTCAGCAGGATCAAATATCCTGTTTGCTGCTGTCACTGAAATA</genome_strand>
        <mrna_strand>CTCGATGAAGAGACATTAATGAGAATTGTTCCTTTCTGGAGAACGTCCCTCAGAGATACAAATACTCCAAGTCAAAAGTATTACATTGATCATTTTGAGATACATCCTGTTAAG.....................................................................................................GTTGTGGCAAGCTTTCTTCCAGGGGAATCTTATGCTAACCATAGCTCCACGCAAGAGACACTAAGATCTTTACTTCACAGTGTTATAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTCCTGTCAAAAATATGACCGTAGAGCTCAATGGCATCCTTGTAACTCATGCATTGGTCACTTTGCGGGAGTTGTCAATTAAATGTGCCCAACATTATTCTTG................................................................................GTATGCAATGAGAGCAGTATACATTGCAAAGGGAAGTCCCTTGCTGCCACCAGCTTTTGCTTCTATATTTGACGACTTAGCTTCATCATCTCTGGATGTTTTCTTTGATCCTTCTACTGGCCATCTTAATCTTCCTGGCCTCACAATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTTCAAACTCATTCGTAAGTGTATTGATGGTAAAGAGTTTTCTGGAACAAAAAGATACTTTGGCGATCTAGGGAAAACT....................................................................................TTTAAGTCAGCAGGATCAAATATCCTGTTTGCTGCTGTCACTGAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E260279" ref_strand="+" ref_description="SGN-E260279 	[cLEG-53-J6]">
      <seq>ctcgatgaagagacattaatgagaattgttcctttctggagaacgtccctcagagatacaaatactccaagtcaaaagtattacattgatcattttgagatacatcctgttaaggttgtggcaagctttcttccaggggaatcttatgctaaccatagctccacgcaagagacactaagatctttacttcacagtgttataaagatacctcctgtcaaaaatatgaccgtagagctcaatggcatccttgtaactcatgcattggtcactttgcgggagttgtcaattaaatgtgcccaacattattcttggtatgcaatgagagcagtatacattgcaaagggaagtcccttgctgccaccagcttttgcttctatatttgacgacttagcttcatcatctctggatgttttctttgatccttctactggccatcttaatcttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="8349" stop="10008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8649" g_stop="8762" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8763" i_stop="8863" i_length="101">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.652" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8864" g_stop="8953" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="204" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8954" i_stop="9385" i_length="432">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9386" g_stop="9492" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="311" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9493" i_stop="9572" i_length="80">
            <donor d_prob="0.829" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9573" g_stop="9708" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="447" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E260279" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8649" e_stop="8762"/>
          <exon e_start="8864" e_stop="8953"/>
          <exon e_start="9386" e_stop="9492"/>
          <exon e_start="9573" e_stop="9708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGATGAAGAGACATTAATGAGAATTGTTCCTTTCTGGAGAACGTCCCTCAGAGATACAAATACTCCAAGTCAAAAGTATTACATTGATCATTTTGAGATACATCCTGTTAAGGTGTCTACAGAACTTTGGTTTCACTATGCGCCCCTTCCCAAGGAAGTTATTTTATCACCAAGAATTAACTCGCGTTTTCTATCCTAATAATGTTCCTAAAGGTTGTGGCAAGCTTTCTTCCAGGGGAATCTTATGCTAACCATAGCTCCACGCAAGAGACACTAAGATCTTTACTTCACAGTGTTATAAAGGTCTGATACATAGTACTTCCTCTGTCCCTTTTACGTGACACCATTTGAGTGGAATGGAGTTTAATATGTTAAGATGGCTTCTATATCACATTAAGAGAGTAGTTGAAAAGTTAGTTTCAGAGAGAACACAATATTATAGTTCAAAATTTGAACTCTTGAAACTTGTGATAGTTGAAAACAAAAATGAAGCTAATTTACTGTTCTTGTCATTATATCTATAATTGCTTCCAATAATTATGAATATATAGTGAATTTCTTGCGGAAGCCACTACTAGGATGATGTCAACTTGTCCCAGGATGGAAGGATATAATGTCAATTGATGAGGGAATATTAAAATTCATTACAGTTGTTCATACTTACTATTTGAGCAAAGGTCTTTTCTTGATTATACCTGTGGTGTAACATTCTGTTTCCGATATCTGCATTTTTAGATACCTCCTGTCAAAAATATGACCGTAGAGCTCAATGGCATCCTTGTAACTCATGCATTGGTCACTTTGCGGGAGTTGTCAATTAAATGTGCCCAACATTATTCTTGGTAAGCCTGTGTTTACTTGTTTGGCTTATGTTCTCAATAATTATTGCTCAATAGTAGCTGAAAATTGCCATTCACTCTAGGTATGCAATGAGAGCAGTATACATTGCAAAGGGAAGTCCCTTGCTGCCACCAGCTTTTGCTTCTATATTTGACGACTTAGCTTCATCATCTCTGGATGTTTTCTTTGATCCTTCTACTGGCCATCTTAATCTTCCT</genome_strand>
        <mrna_strand>CTCGATGAAGAGACATTAATGAGAATTGTTCCTTTCTGGAGAACGTCCCTCAGAGATACAAATACTCCAAGTCAAAAGTATTACATTGATCATTTTGAGATACATCCTGTTAAG.....................................................................................................GTTGTGGCAAGCTTTCTTCCAGGGGAATCTTATGCTAACCATAGCTCCACGCAAGAGACACTAAGATCTTTACTTCACAGTGTTATAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTCCTGTCAAAAATATGACCGTAGAGCTCAATGGCATCCTTGTAACTCATGCATTGGTCACTTTGCGGGAGTTGTCAATTAAATGTGCCCAACATTATTCTTG................................................................................GTATGCAATGAGAGCAGTATACATTGCAAAGGGAAGTCCCTTGCTGCCACCAGCTTTTGCTTCTATATTTGACGACTTAGCTTCATCATCTCTGGATGTTTTCTTTGATCCTTCTACTGGCCATCTTAATCTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E235595" ref_strand="+" ref_description="SGN-E235595 	[cLED-11-P20]">
      <seq>agatacctcctgtcaaaaatatgaccgtagagctcaatggcatccttgtaactcatgcattggtcactttgcgggagttgtcaattaaatgtgcccaacattattcttggtatgcaatgagagcagtatacattgcaaagggaagtcccttgctgccaccagcttttgcttctatatttgacgacttagcttcatcatctctggatgttttctttgatccttctactggccatcttaatcttcctggcctcacaattggtactttcaaactcattcgtaagtgtattgatggtaaagagttttctggaacaaaaagatactttggcgatctagggaaaacttttaagtcagcaggatcaaatatcctgtttgctgctgtcactgaaatatcagactcggttctgaaaggagcagaagctagtggtttaaatggaatggtgaatggtttccatcaaggaatacttaaattggcaatggaacctacattactggggagtgctttcatggaaggtggccctgatcgaaaaattgggcttgatcgaagtcctgaggttgatgagctatacattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="9084" stop="11413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9384" g_stop="9492" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9493" i_stop="9572" i_length="80">
            <donor d_prob="0.829" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9573" g_stop="9721" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="258" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9722" i_stop="10572" i_length="851">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10573" g_stop="10655" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="341" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10656" i_stop="10739" i_length="84">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.752" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10740" g_stop="10835" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="437" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10836" i_stop="10982" i_length="147">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10983" g_stop="11105" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="560" r_length="123" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E235595" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9384" e_stop="9492"/>
          <exon e_start="9573" e_stop="9721"/>
          <exon e_start="10573" e_stop="10655"/>
          <exon e_start="10740" e_stop="10835"/>
          <exon e_start="10983" e_stop="11105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATACCTCCTGTCAAAAATATGACCGTAGAGCTCAATGGCATCCTTGTAACTCATGCATTGGTCACTTTGCGGGAGTTGTCAATTAAATGTGCCCAACATTATTCTTGGTAAGCCTGTGTTTACTTGTTTGGCTTATGTTCTCAATAATTATTGCTCAATAGTAGCTGAAAATTGCCATTCACTCTAGGTATGCAATGAGAGCAGTATACATTGCAAAGGGAAGTCCCTTGCTGCCACCAGCTTTTGCTTCTATATTTGACGACTTAGCTTCATCATCTCTGGATGTTTTCTTTGATCCTTCTACTGGCCATCTTAATCTTCCTGGCCTCACAATTGGTATGCCCATGAAAACTCCGAAATCCTTGGCTTACTGCTTGATGCATCCATGTTTAGACTTAAGATGAGTACTGCTCATTTACGTGACCTGTGCTTCCATGGACAAGCATTTATGTGGCTAATCTCCTTTGATGCAGTGATGCTTTTACGGGGTCTTTTGTTCCAGCCCCTACTGAATTTGCCTTTGCATCAGAATACCAGGAAACGAATACTTCATGTGAAATTTAAGAAAAACTGTGTGTTTAATGGGAGACTATTTGAATATTACTGTCTTCTTATTTTGGGTTAACTTGCCTTTGCAAGGTGTGCTTCTTAGTGGAAATGATCTTGTGTTGGGGGCTGTTTTGGTACGCCATAAATCTTGTCAAAACTGAAACCTTTTTAGCAACATTATCATACTGAAGTGGCGTATTAGGCATAGGCAAGTGAAAACAGCTTGTATGTCAAGGCAAAATTGTGCATTGCTAACTCTGCCCATTTTCTTGAGCGCCTATGACGCAGAAAGTTCTTCGAATTAATGTTTAATGAGATAATTTGTAACTTAATCCAATCCAACCTGATAACTAGATAAATCTAAATCAAGGAGAGTTTTCAAACCATAAAACAGCTCGAACATTTGAATTCCAGTGCAAATAGATTATAGGATGTCAGACTTCTATGCAGTACTTTATACCCAACTCTCATGAGAGTAATGATATCAGCTGCTTTTCCGGTTCAATTTGCTTTATGATGAAGAATTAGTATGACAATCTTTGCTGCAGGTCTCTTGGAATTCACTGGCAAGTATGACTTTTCCCCTTTTATTTATGTATGTTTCCTTATCAAAGTCTCTGCTTACCTTTTGGATGAAGGTACTTTCAAACTCATTCGTAAGTGTATTGATGGTAAAGAGTTTTCTGGAACAAAAAGATACTTTGGCGATCTAGGGAAAACTGTAAGTTATATATTTTTGTTGATTTTTTTGTTCATGGTTGATTTGCAATTGTCAATGACGCTGCAAAGGGTGTTTCATATGCAGTTTAAGTCAGCAGGATCAAATATCCTGTTTGCTGCTGTCACTGAAATATCAGACTCGGTTCTGAAAGGAGCAGAAGCTAGTGGTTTAAATGGAATGGTAAGAACATCTTATCTGATAGCATTACAAATACTGTAACTACTAAGTGCCAACTTGAAGTGTTCAACCTTGATCTAGTGCTAGTTAGGTACTATTTCAGATTGTAATTTGGCTGTCACCCGAATCGATTTGATATGTTCTTTCCAGGTGAATGGTTTCCATCAAGGAATACTTAAATTGGCAATGGAACCTACATTACTGGGGAGTGCTTTCATGGAAGGTGGCCCTGATCGAAAAATTGGGCTTGATCGAAGTCCTGGGGTTGATGAG</genome_strand>
        <mrna_strand>AGATACCTCCTGTCAAAAATATGACCGTAGAGCTCAATGGCATCCTTGTAACTCATGCATTGGTCACTTTGCGGGAGTTGTCAATTAAATGTGCCCAACATTATTCTTG................................................................................GTATGCAATGAGAGCAGTATACATTGCAAAGGGAAGTCCCTTGCTGCCACCAGCTTTTGCTTCTATATTTGACGACTTAGCTTCATCATCTCTGGATGTTTTCTTTGATCCTTCTACTGGCCATCTTAATCTTCCTGGCCTCACAATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTTCAAACTCATTCGTAAGTGTATTGATGGTAAAGAGTTTTCTGGAACAAAAAGATACTTTGGCGATCTAGGGAAAACT....................................................................................TTTAAGTCAGCAGGATCAAATATCCTGTTTGCTGCTGTCACTGAAATATCAGACTCGGTTCTGAAAGGAGCAGAAGCTAGTGGTTTAAATGGAATG...................................................................................................................................................GTGAATGGTTTCCATCAAGGAATACTTAAATTGGCAATGGAACCTACATTACTGGGGAGTGCTTTCATGGAAGGTGGCCCTGATCGAAAAATTGGGCTTGATCGAAGTCCTGAGGTTGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E239490" ref_strand="+" ref_description="SGN-E239490 	[cLED-23-D4]">
      <seq>agatacctcctgtcaaaaatatgaccgtagagctcaagggcatccttgtaactcatgcattggtcactttgcgggagttgtcaattaaatgtgcccaacattattcttggtatgcaatgagagcagtatacattgcaaagggaagtcccttgctgccaccagcttttgcttctatatttgacgacttagcttcatcatctctggatgttttctttgatccttctactggccatcttaatcttcctggcctcacaattggtactttcaaactcattcgtaagtgtattgatggtaaagagttttctggaacaaaaagatactttggcgatctaaggaaaacttttaagtcagcaggatcaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="9084" stop="11061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9384" g_stop="9492" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9493" i_stop="9572" i_length="80">
            <donor d_prob="0.829" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9573" g_stop="9721" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="258" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9722" i_stop="10572" i_length="851">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.848" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10573" g_stop="10655" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="341" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10656" i_stop="10739" i_length="84">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.752" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10740" g_stop="10761" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="363" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E239490" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9384" e_stop="9492"/>
          <exon e_start="9573" e_stop="9721"/>
          <exon e_start="10573" e_stop="10655"/>
          <exon e_start="10740" e_stop="10761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATACCTCCTGTCAAAAATATGACCGTAGAGCTCAATGGCATCCTTGTAACTCATGCATTGGTCACTTTGCGGGAGTTGTCAATTAAATGTGCCCAACATTATTCTTGGTAAGCCTGTGTTTACTTGTTTGGCTTATGTTCTCAATAATTATTGCTCAATAGTAGCTGAAAATTGCCATTCACTCTAGGTATGCAATGAGAGCAGTATACATTGCAAAGGGAAGTCCCTTGCTGCCACCAGCTTTTGCTTCTATATTTGACGACTTAGCTTCATCATCTCTGGATGTTTTCTTTGATCCTTCTACTGGCCATCTTAATCTTCCTGGCCTCACAATTGGTATGCCCATGAAAACTCCGAAATCCTTGGCTTACTGCTTGATGCATCCATGTTTAGACTTAAGATGAGTACTGCTCATTTACGTGACCTGTGCTTCCATGGACAAGCATTTATGTGGCTAATCTCCTTTGATGCAGTGATGCTTTTACGGGGTCTTTTGTTCCAGCCCCTACTGAATTTGCCTTTGCATCAGAATACCAGGAAACGAATACTTCATGTGAAATTTAAGAAAAACTGTGTGTTTAATGGGAGACTATTTGAATATTACTGTCTTCTTATTTTGGGTTAACTTGCCTTTGCAAGGTGTGCTTCTTAGTGGAAATGATCTTGTGTTGGGGGCTGTTTTGGTACGCCATAAATCTTGTCAAAACTGAAACCTTTTTAGCAACATTATCATACTGAAGTGGCGTATTAGGCATAGGCAAGTGAAAACAGCTTGTATGTCAAGGCAAAATTGTGCATTGCTAACTCTGCCCATTTTCTTGAGCGCCTATGACGCAGAAAGTTCTTCGAATTAATGTTTAATGAGATAATTTGTAACTTAATCCAATCCAACCTGATAACTAGATAAATCTAAATCAAGGAGAGTTTTCAAACCATAAAACAGCTCGAACATTTGAATTCCAGTGCAAATAGATTATAGGATGTCAGACTTCTATGCAGTACTTTATACCCAACTCTCATGAGAGTAATGATATCAGCTGCTTTTCCGGTTCAATTTGCTTTATGATGAAGAATTAGTATGACAATCTTTGCTGCAGGTCTCTTGGAATTCACTGGCAAGTATGACTTTTCCCCTTTTATTTATGTATGTTTCCTTATCAAAGTCTCTGCTTACCTTTTGGATGAAGGTACTTTCAAACTCATTCGTAAGTGTATTGATGGTAAAGAGTTTTCTGGAACAAAAAGATACTTTGGCGATCTAGGGAAAACTGTAAGTTATATATTTTTGTTGATTTTTTTGTTCATGGTTGATTTGCAATTGTCAATGACGCTGCAAAGGGTGTTTCATATGCAGTTTAAGTCAGCAGGATCAAATA</genome_strand>
        <mrna_strand>AGATACCTCCTGTCAAAAATATGACCGTAGAGCTCAAGGGCATCCTTGTAACTCATGCATTGGTCACTTTGCGGGAGTTGTCAATTAAATGTGCCCAACATTATTCTTG................................................................................GTATGCAATGAGAGCAGTATACATTGCAAAGGGAAGTCCCTTGCTGCCACCAGCTTTTGCTTCTATATTTGACGACTTAGCTTCATCATCTCTGGATGTTTTCTTTGATCCTTCTACTGGCCATCTTAATCTTCCTGGCCTCACAATTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTTCAAACTCATTCGTAAGTGTATTGATGGTAAAGAGTTTTCTGGAACAAAAAGATACTTTGGCGATCTAAGGAAAACT....................................................................................TTTAAGTCAGCAGGATCAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E544991" ref_strand="+" ref_description="SGN-E544991 	[TUS-67-J19]">
      <seq>tttttttttttcatacaatgttcaatagaatgtagaaagtttctgtgctaaattcttgtgtaggcatacaggaagaccaaaaaaaaatttatttatttttgctttgttatatacatttggaataaaaacgaaaggggaaggatcatctattatcctctcatatgaacaaaatgcacttgctatttattctttttcctagaaaaagctttaagacaagaaaatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="-" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="13754" stop="12939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13454" g_stop="13239" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="225" r_length="216" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="-" ref_id="SGN-E544991" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>216</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13454" e_stop="13239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATACAATGTTCAATAGAATGTAGAAAGTTTCTGTGCTAAATTCTTGTGTAGGCATACAGGAAGACCAAAAAAAAATTTATTTATTTTTGCTTTGTTATATACATTTGGAATAAAAACGAAAGGGGAAGGATCATCTATTATCCTCTCATATGAACAAAATGCACTTGCTATTTATTCTTTTTCCTAGAAAAAGCTTTAAGACAAGAAAATGTT</genome_strand>
        <mrna_strand>TTCATACAATGTTCAATAGAATGTAGAAAGTTTCTGTGCTAAATTCTTGTGTAGGCATACAGGAAGACCAAAAAAAAATTTATTTATTTTTGCTTTGTTATATACATTTGGAATAAAAACGAAAGGGGAAGGATCATCTATTATCCTCTCATATGAACAAAATGCACTTGCTATTTATTCTTTTTCCTAGAAAAAGCTTTAAGACAAGAAAATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E544992" ref_strand="+" ref_description="SGN-E544992 	[TUS-67-J19]">
      <seq>aacattttcttgtcttaaagctttttctaggaaaaagaataaatagcaagtgcattttgttcatatgagaggataatagatgatccttcccctttcgtttttattccaaatgtatataacaaagcaaaaataaataaatttttttttggtcttcctgtatgcctacacaagaatttagcacagaaactttctacattctattgaacattgtatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="12939" stop="13754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13239" g_stop="13454" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E544992" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>216</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13239" e_stop="13454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTTTCTTGTCTTAAAGCTTTTTCTAGGAAAAAGAATAAATAGCAAGTGCATTTTGTTCATATGAGAGGATAATAGATGATCCTTCCCCTTTCGTTTTTATTCCAAATGTATATAACAAAGCAAAAATAAATAAATTTTTTTTTGGTCTTCCTGTATGCCTACACAAGAATTTAGCACAGAAACTTTCTACATTCTATTGAACATTGTATGAA</genome_strand>
        <mrna_strand>AACATTTTCTTGTCTTAAAGCTTTTTCTAGGAAAAAGAATAAATAGCAAGTGCATTTTGTTCATATGAGAGGATAATAGATGATCCTTCCCCTTTCGTTTTTATTCCAAATGTATATAACAAAGCAAAAATAAATAAATTTTTTTTTGGTCTTCCTGTATGCCTACACAAGAATTTAGCACAGAAACTTTCTACATTCTATTGAACATTGTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E308892" ref_strand="+" ref_description="SGN-E308892 	[cLEY-23-J21]">
      <seq>ttaaagctttttctaggaaaaagaataaatagcaagtgcatggtgttcatatgagaggataatagatgatccttcccctttcgtttttattccaaatgtatataacaaagcaaaaataaataaatttttttttggtcttcctgtatgcctacacaagaatttagcacagaaactttctacattctattgaacattgtatgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="12953" stop="13754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13253" g_stop="13454" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E308892" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>202</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13253" e_stop="13454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGCTTTTTCTAGGAAAAAGAATAAATAGCAAGTGCATTTTGTTCATATGAGAGGATAATAGATGATCCTTCCCCTTTCGTTTTTATTCCAAATGTATATAACAAAGCAAAAATAAATAAATTTTTTTTTGGTCTTCCTGTATGCCTACACAAGAATTTAGCACAGAAACTTTCTACATTCTATTGAACATTGTATGAA</genome_strand>
        <mrna_strand>TTAAAGCTTTTTCTAGGAAAAAGAATAAATAGCAAGTGCATGGTGTTCATATGAGAGGATAATAGATGATCCTTCCCCTTTCGTTTTTATTCCAAATGTATATAACAAAGCAAAAATAAATAAATTTTTTTTTGGTCTTCCTGTATGCCTACACAAGAATTTAGCACAGAAACTTTCTACATTCTATTGAACATTGTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E240910" ref_strand="+" ref_description="SGN-E240910 	[cLED-24-K9]">
      <seq>ttttatgttgtgagatacaaaaaaatatggcttttgcgatatccaaagagaaaataggcagtgatgatcaagatagtgtcgagacagagagagtaataagtagccaactctatttgaagtcatcgtcccatgaaaatcttgacaaaaatgttgtgctgaggagacttcgtcaccataaatacttgcaaaaggttcgtggaaatttgaagactctattggacagttattcgacaagggattattatgagcacaagtggcttgaacagggcgacgttttctgctccccttagcatatatattttccttcttgtaccaaacatccttacctctctgtctcttgagtttctgtgggcggagcctaaattttgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="13664" stop="14633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13964" g_stop="14333" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E240910" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13964" e_stop="14333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATGTTGTGAGATACAAAAAAATATGGCTTTTGCGATATCCAAAGAGAAAATAGGCAGTGATGATCAAGATAGTGTCGAGACAGAGAGAGTAATAAGTAGCCAACTCTATTTGAAGTCATCGTCCCATGAAAATCTTGACAAAAATGTTGTGCTGAGGAGACTTCGTCACCATAAATACTTGCAAAAGGTTCGTGGAAATTTGAAGACTCTATTGGACAGTTATTCGACAAGGGATTATTATGAGCACAAGTGGCTTGAACAGGGCGACGTTTTCTGCTCCCCTTAGCATATATATTTCCCTCCTTGTACCAAACATCCTTACCTCTCTGTCTCTTGAGTTTCTGTGGGCGGAGCCTAAA-TTTGAAG</genome_strand>
        <mrna_strand>TTTTATGTTGTGAGATACAAAAAAATATGGCTTTTGCGATATCCAAAGAGAAAATAGGCAGTGATGATCAAGATAGTGTCGAGACAGAGAGAGTAATAAGTAGCCAACTCTATTTGAAGTCATCGTCCCATGAAAATCTTGACAAAAATGTTGTGCTGAGGAGACTTCGTCACCATAAATACTTGCAAAAGGTTCGTGGAAATTTGAAGACTCTATTGGACAGTTATTCGACAAGGGATTATTATGAGCACAAGTGGCTTGAACAGGGCGACGTTTTCTGCTCCCCTTAGCATATATATTTTCCTTCTTGTACCAAACATCCTTACCTCTCTGTCTCTTGAGTTTCTGTGGGCGGAGCCTAAATTTTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E239522" ref_strand="+" ref_description="SGN-E239522 	[cLED-23-N22]">
      <seq>ttatgttgtgagatacaaaaaaatatggcttttgcgatatccaaagagaaaataggcagtgatgatcaagatagtgtcgagacagagagagtaataagtagccaactctatttgaagtcatcgtcccatgaaaatcttgacaaaaatgttgtgctgaggagacttcgtcaccataaatacttgcaaaaggttcgtggaaatttgaagactctattggacagttattcgacaagggattattatgagcacaagtggcttgaacagggcgacgttttctgctccccttagcatatatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="13666" stop="14563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13966" g_stop="14263" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E239522" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13966" e_stop="14263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGTTGTGAGATACAAAAAAATATGGCTTTTGCGATATCCAAAGAGAAAATAGGCAGTGATGATCAAGATAGTGTCGAGACAGAGAGAGTAATAAGTAGCCAACTCTATTTGAAGTCATCGTCCCATGAAAATCTTGACAAAAATGTTGTGCTGAGGAGACTTCGTCACCATAAATACTTGCAAAAGGTTCGTGGAAATTTGAAGACTCTATTGGACAGTTATTCGACAAGGGATTATTATGAGCACAAGTGGCTTGAACAGGGCGACGTTTTCTGCTCCCCTTAGCATATATATT</genome_strand>
        <mrna_strand>TTATGTTGTGAGATACAAAAAAATATGGCTTTTGCGATATCCAAAGAGAAAATAGGCAGTGATGATCAAGATAGTGTCGAGACAGAGAGAGTAATAAGTAGCCAACTCTATTTGAAGTCATCGTCCCATGAAAATCTTGACAAAAATGTTGTGCTGAGGAGACTTCGTCACCATAAATACTTGCAAAAGGTTCGTGGAAATTTGAAGACTCTATTGGACAGTTATTCGACAAGGGATTATTATGAGCACAAGTGGCTTGAACAGGGCGACGTTTTCTGCTCCCCTTAGCATATATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E244061" ref_strand="+" ref_description="SGN-E244061 	[cLEE-1-N23]">
      <seq>aagagcaaaaaccttcgttctctgagtctcagaatgtgaatcaaggtggcgagaatggaaactctgtaataagtagtgagctctatttgaaatcatcgactgatcaccaaaatcttgacaaaaatgttgtgttgaggagacttcgttttcacaaagttcgtgcaaagttgcagggtctattggacacaaggaattatgattattacgagcacaagtggttagaacagggcgacgttttctgctccccctaggccctctctctctctgtttttgtcttctgtgcctaagatttaaagtaatgacgagttcaattttaacatcaaatatattgcaatcatcatcatattattggttatagagaaatttcctatttctttaaggtttagtaacatatattagtataagttgaaccatgtaaatatcgcttccttttctgtttagataataatgcacttttctcgtgtttctgctcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="14802" stop="15876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15102" g_stop="15576" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E244061" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15102" e_stop="15576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGCAAAAACCTTCGTTCTCTGAGTCTCAGAATGTGAATCAAGGTGGCGAGAATGGAAACTCTGTAATAAGTAGTGAGCTCTATTTGAAATCATCGACTGATCACCAAAATCTTGACAAAAATGTTGTGTTGAGGAGACTTCGTTTTCACAAAGTTCGTGCAAAGTTGCAGGGTCTATTGGACACAAGGAATTATGATTATTACGAGCACAAGTGGTTAGAACAGGGCGACGTTTTCTGCTCCCCCTAGGCCCTCTCTCTCTCTGTTTTTGTCTTCTGTGCCTAAGATTTAAAGTAATGACGAGTTCAATTTTAACATCAAATATATTGCAATCATCATCATATTATTGGTTATAGAGAAATTTCCTATTTCTTTAAGGTTTAGTAACATATATTAGTATAAGTTGAACCATGTAAATATCGCTTCCTTTTCTGTTTAGATAATAATGCACTTTTCTCGTGTTTCTGCTCTTT</genome_strand>
        <mrna_strand>AAGAGCAAAAACCTTCGTTCTCTGAGTCTCAGAATGTGAATCAAGGTGGCGAGAATGGAAACTCTGTAATAAGTAGTGAGCTCTATTTGAAATCATCGACTGATCACCAAAATCTTGACAAAAATGTTGTGTTGAGGAGACTTCGTTTTCACAAAGTTCGTGCAAAGTTGCAGGGTCTATTGGACACAAGGAATTATGATTATTACGAGCACAAGTGGTTAGAACAGGGCGACGTTTTCTGCTCCCCCTAGGCCCTCTCTCTCTCTGTTTTTGTCTTCTGTGCCTAAGATTTAAAGTAATGACGAGTTCAATTTTAACATCAAATATATTGCAATCATCATCATATTATTGGTTATAGAGAAATTTCCTATTTCTTTAAGGTTTAGTAACATATATTAGTATAAGTTGAACCATGTAAATATCGCTTCCTTTTCTGTTTAGATAATAATGCACTTTTCTCGTGTTTCTGCTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E241363" ref_strand="+" ref_description="SGN-E241363 	[cLED-28-D7]">
      <seq>agagcaaaaaccttcgttctctgagtctcagaatgtgaatcaaggtggcgagaatggaaactctgtaataagtagtgagctctatttgaaatcatcgactgatcaccaaaatcttgacaaaaatgttgtgttgaggagacttcgttttcacaaagttcgtgcaaagttgcagggtctattggacacaaggaattatgattattacgagcacaagtggttagaacagggcgacgttttctgctccccctaggccctctctctctctgtttttgtcttctgtgcctaagatttaaagtaatgacgagttcaattttaacatcaaatatattgcaatcatcatcatattattggttatagagaaatttcctatttctttaaggtttagtaacatatattagtataagttgaaccatgtaaatatcgcttccttttctgtttagataataatgcacttttctcgtgtttctgctctttcaaataaaattgagtatcaaacttgtgttccgtcaaaccacgtacttcacataaattggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="14803" stop="15937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15103" g_stop="15637" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E241363" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15103" e_stop="15637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCAAAAACCTTCGTTCTCTGAGTCTCAGAATGTGAATCAAGGTGGCGAGAATGGAAACTCTGTAATAAGTAGTGAGCTCTATTTGAAATCATCGACTGATCACCAAAATCTTGACAAAAATGTTGTGTTGAGGAGACTTCGTTTTCACAAAGTTCGTGCAAAGTTGCAGGGTCTATTGGACACAAGGAATTATGATTATTACGAGCACAAGTGGTTAGAACAGGGCGACGTTTTCTGCTCCCCCTAGGCCCTCTCTCTCTCTGTTTTTGTCTTCTGTGCCTAAGATTTAAAGTAATGACGAGTTCAATTTTAACATCAAATATATTGCAATCATCATCATATTATTGGTTATAGAGAAATTTCCTATTTCTTTAAGGTTTAGTAACATATATTAGTATAAGTTGAACCATGTAAATATCGCTTCCTTTTCTGTTTAGATAATAATGCACTTTTCTCGTGTTTCTGCTCTTTCAAATAAAATTGAGTATCAAACTTGTGTTCCGTCAAACCACGTACTTCACATAAATTGGAA</genome_strand>
        <mrna_strand>AGAGCAAAAACCTTCGTTCTCTGAGTCTCAGAATGTGAATCAAGGTGGCGAGAATGGAAACTCTGTAATAAGTAGTGAGCTCTATTTGAAATCATCGACTGATCACCAAAATCTTGACAAAAATGTTGTGTTGAGGAGACTTCGTTTTCACAAAGTTCGTGCAAAGTTGCAGGGTCTATTGGACACAAGGAATTATGATTATTACGAGCACAAGTGGTTAGAACAGGGCGACGTTTTCTGCTCCCCCTAGGCCCTCTCTCTCTCTGTTTTTGTCTTCTGTGCCTAAGATTTAAAGTAATGACGAGTTCAATTTTAACATCAAATATATTGCAATCATCATCATATTATTGGTTATAGAGAAATTTCCTATTTCTTTAAGGTTTAGTAACATATATTAGTATAAGTTGAACCATGTAAATATCGCTTCCTTTTCTGTTTAGATAATAATGCACTTTTCTCGTGTTTCTGCTCTTTCAAATAAAATTGAGTATCAAACTTGTGTTCCGTCAAACCACGTACTTCACATAAATTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E273495" ref_strand="+" ref_description="SGN-E273495 	[cLEN-3-J12]">
      <seq>gagcaaaaaccttcgttctctgagtctcagaatgtgaatcaaggtggcgagaatggaaactctgtaataagtagtgagctctatttgaaatcatcgactgatcaccaaaatcttgacaaaaatgttgtgttgaggagacttcgttttcacaaagttcgtgcaaagttgcagggtctattggacacaaggaattatgattattacgagcacaagtggttagaacagggcgacgttttctgctccccctaggccctctctctctctgtttttgtcttctgtgcctaagatttaaagtaatgacgagttcaattttaacatcaaatatattgcaatcatcatcatattattggttatagagaaatttcctatttctttaaggtttagtaacatatattagtataagttgaaccatgtaaatatcgcttccttttctgtttagataataatgcacttttctcgtgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="14804" stop="34001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15104" g_stop="15563" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15564" i_stop="17557" i_length="1994">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17558" g_stop="17576" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="479" r_length="19" r_score="0.789"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E273495" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15104" e_stop="15563"/>
          <exon e_start="17558" e_stop="17576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAAAAACCTTCGTTCTCTGAGTCTCAGAATGTGAATCAAGGTGGCGAGAATGGAAACTCTGTAATAAGTAGTGAGCTCTATTTGAAATCATCGACTGATCACCAAAATCTTGACAAAAATGTTGTGTTGAGGAGACTTCGTTTTCACAAAGTTCGTGCAAAGTTGCAGGGTCTATTGGACACAAGGAATTATGATTATTACGAGCACAAGTGGTTAGAACAGGGCGACGTTTTCTGCTCCCCCTAGGCCCTCTCTCTCTCTGTTTTTGTCTTCTGTGCCTAAGATTTAAAGTAATGACGAGTTCAATTTTAACATCAAATATATTGCAATCATCATCATATTATTGGTTATAGAGAAATTTCCTATTTCTTTAAGGTTTAGTAACATATATTAGTATAAGTTGAACCATGTAAATATCGCTTCCTTTTCTGTTTAGATAATAATGCACTTTTCTCGTGTTTCTGCTCTTTCAAATAAAATTGAGTATCAAACTTGTGTTCCGTCAAACCACGTACTTCACATAAATTGGAACGAAAGAAATTGAGCCACGTATGCTTACAAGTTACAACATACTCCGAAGTTGGTTCATTTATGCGCAGAACATGTATTAAAGTAAAAGTGTATCACAAGTGTCAACTGAAACGAAAAAGTCACAGCAAGATCTCAACATCCATAGAATATGGTGATTTACGTAAGTCATTTAAGTGAATAATGAATAGGTGACCAATCTTTAGACTCTTGATCATTTCCTCCTGAATAATTTTACTAGATAGTTGTTTGAAAAATTATCTAAAATATTTTGTTTTAGGATTATAATATTACTCAACTTTACCTATTTTTTTAGACTGTGTGCTTATTCAAAAAATACATTCTCTCTTTTTTATTAGGATGATATGTCACATTATTTATTTTTTTATCATTAAAAAAAATGCTTCAAATCTATTAAAACGTTAGGTTGCAATATGTTTTTTAAAAAAAATATTATTTTCTATTTATATTTTTTAGATATATAAAAATAATTTTAAAAATGAACGAAAAAAGTATTTCATTTCTACAAGTAACTACTAATAGATTGATTTAAATATTTTTTAAAATAAGTTTTTTAATGATAATTATTATTTTTTTACTATAATTTTTTAATTAATTTTTAAATAATAATTATAGTTTTTTTATGGTGCATTTTTTCTTCTCCTATTTAGATAGGTATTTCTACATTTCATTTTTTTAGAGTATTTCCTTAAATCACGGAAAGTTTGATAAATATAAATTGACATTATAGTTTTTTTTATAAAATAATTCACTTTTTCAGTTTTTATTTTTTAACCTTAAAAATTGAAATTTGAAGCATTTAAAGATCTTTCATTTTTTTCTCCGTAATAGCCATTACTGTTTTTTTTTTAAAAAAAAAAGTAGCTCAATTTTAATTTTTTTTCCTTTAAAATTGAAATTAGAGGCATTTAAAAATCATCCAGTTTTTGTCTTTACAGTTTTTTTTAACAAAAGAACTTTTATTTTCTATTTAAAATAACTATATTAAAATTCCTGTTTTTTAAATTGTATTTTTAAAGCATATTTAAGATGCTTTTTGAAAAATTAAAATTCTTGAATATTAGTGGTGCTGACACGTGACACTTTTTACTTCTCCTATTAGATATAGATAGATTTTTAAATTAAAAAATATAGTTAAACCCACATATTATATCCAGTAAAAAAAATTACATCAAGAACTGTAATATGAGCTCCTTCGGTTCTTCAAGAAAATATGTGAGTTCTTTTTGTTATTTAAAAGAATTAGAAAAATATTAATAATAAATTAAAAAATATGACATGGCACCCTAGTAGGAGAAAAATAATGTATCTTTTATGTTAAGTATATATTTTAAGAAAATTAGTCAAAGTTGAATAATATTATAGTCATAAAACAAATATAAGTGATATTTTTAGATAATTTCTTAACCAGGAATGACTATACGAGGAAATTACTCTTTCCTCCTTCAAGCATCAATACTTTCACACTTTCACTAATTAATTAATTTAGAAATTGATCCTCATTAATTCATGAACCGACACGAATATCTAACATTTATATTTTAGGTAAACTATGCAAGCTTTCTTTTTTTATATATTATACGCAGTACATCTTAACATGTATGATGTATGTGCAGTACTTTTATTGTGTTAACACCTACCACCATTGACATCTTTTATAGTAAAGTTAGAGAATTTTCATTTGTCTATAGGACGTTTAACAACTTCTCTAAATTACAGAACCAAATTTATCATCACTAATAAAACCAATATATTTATTTTGTGAAGATGATTTATGTGATTAAAACAAATCAAAAGTAAGTAGGTACAAAATGTTCTTTTTGGAGGTTCTTGATTTGCAACCGTGTTAATAATTGTTTATTTGACGACAAAATCGGTTCAATTGATATTATGATCCATTACGAAGAAAAAATTAAAAAGA</genome_strand>
        <mrna_strand>GAGCAAAAACCTTCGTTCTCTGAGTCTCAGAATGTGAATCAAGGTGGCGAGAATGGAAACTCTGTAATAAGTAGTGAGCTCTATTTGAAATCATCGACTGATCACCAAAATCTTGACAAAAATGTTGTGTTGAGGAGACTTCGTTTTCACAAAGTTCGTGCAAAGTTGCAGGGTCTATTGGACACAAGGAATTATGATTATTACGAGCACAAGTGGTTAGAACAGGGCGACGTTTTCTGCTCCCCCTAGGCCCTCTCTCTCTCTGTTTTTGTCTTCTGTGCCTAAGATTTAAAGTAATGACGAGTTCAATTTTAACATCAAATATATTGCAATCATCATCATATTATTGGTTATAGAGAAATTTCCTATTTCTTTAAGGTTTAGTAACATATATTAGTATAAGTTGAACCATGTAAATATCGCTTCCTTTTCTGTTTAGATAATAATGCACTTTTCTCGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E212361" ref_strand="+" ref_description="SGN-E212361 	[cLEC-74-G8]">
      <seq>agaaattgaagaatacagggtgtggaactgtgatttcgtccatcttgattggtatggataatgatacaatgaagagttctgccatgtttatcgagtttcagacgatggaattagcgtggggattggaaggggattgtgcatgtcataacgatgcaaattgtaccaacgtttctctcccggggaaccgaaaaggtttccggtgccggtgtaaagatggattcgtcggtgatggcttcagcgacggtgatggctgccggaaagtttcaagatgtaatccttccagatacctctctggacgatgtggtggaactaccagaattggtgtgctcgttggagggattattgctggagctggtttaatggctgctttggctgttctttgctactgcattcgaagacgttctgcatctctcaagaaaagaatgagcgcaagacgccttctctctgaagctgcaggcagcaacagtgttcatgtatttcaatacaaagaaattgagagagcaacaaatagtttctctgagaaacagaggctgggcataggggcttatggcacagtttatgctggaaagctccacagtgatgaatgggttgcaattaagaaactaagacaccgggatccggatggtgttgaacaagtgatgaatgaggttaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="24648" stop="29212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24948" g_stop="25208" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25209" i_stop="28266" i_length="3058">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28267" g_stop="28341" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="336" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28342" i_stop="28594" i_length="253">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28595" g_stop="28912" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="654" r_length="318" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E212361" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24948" e_stop="25208"/>
          <exon e_start="28267" e_stop="28341"/>
          <exon e_start="28595" e_stop="28912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTGAAGAATACAGGGTGTGGAACTGTGATTTCGTCCATCTTGATTGGTATGGATAATGATACAATGAAGAGTTCTGCCATGTTTATCGAGTTTCAGACGATGGAATTAGCGTGGGGATTGGAAGGGGATTGTGCATGTCATAACGATGCAAATTGTACCAACGTTTCTCTCCCGGGGAACCGAAAAGGTTTCCGGTGCCGGTGTAAAGATGGATTCGTCGGTGATGGCTTCAGCGACGGTGATGGCTGCCGGAAAGGTTAGTTCAATTATTCTTTTCAAATGTTAAAACAGTTCACTGCAACATTATTCACGGTTAAATTGTGAGCATCATCTTAATTTAAATTTTAGAGATAAACACCTTTATTTACCGTGTGTATATATATATATATAAAAAGAGACTAAAAATTTAAATGGATATGTTAAATATAAAGTTTAAAATTTTATTTCACATAACATATGTTTCGTTATAAGTGTTAGTGCTATTAATTTCAATTGAACTCAATAAATTGAGTTTTATTTATATATATTTCGTGACAAGTGTTAACGCTATTAATTTCAATTAAACCAAATAAATTAAGTTTCATCTATAAGGTATAGGTAGATATTTTAAATTTTAGTACTCGGAGACATATCATTAATGGAAATGTCGTCGAACTCAAAATGTCTACTGAATTTGGTAAATGGCAATTCAATAGAGACAACGTTTATTATATTTAGGGGTAAAATTCAAAGTTAATTGCTAGATGGCCTAATTATTGTTTGACTAAGGGCAAAAAGTGACGTGAGAGATGATAAGATGACCAGTAGTTTTTATTATATTTGGTTTGACCAGTAGCAACACGCCACGAAGAAGGGCTGTTGTTAATTTCAATGGAGATTTACATGAATTGACTATGATTAAATTAATGATATTTTAGTGTGATTAAGTTATTTAGGAAATCCAAATATTCCACAACTTGTGTTATATGCGGCTGGTGTAGTCAATAAAGCCTTCTCTTGATTTTGATATGGTCGAATTTTGGGTTCTAAGCTGTCGACTGTTGAAGGTCTACTATATGACCTCCTCATGCGACCTGGGATTTGTTGATATTCTTTTCTTATTTGATTTTATAATTTTCAGTGGTTTTTTATTAACAAATAAAAAAAATTGTTTATAAATAAGTACAGATAAAGAAGATTAGGCTTATCTTATCATTCCTAATGTTATAATGAACTTCTAGTAATTAATGAATATGAAAAAATAGATATTTTATGATAAATTTACTAATGAGAATATCTATACAATGCAAAAATATAAAAACTAAAAAAAGGAAGGTTGAGTTTTCAATCACAAACTACCTTTAACAAATGTATATTTAACTTTTTCACATTACATCAAAAGAATTGAATTTTTTTTGGTTAAAAAATTGACTTTCTGGCCTACTGTGTTCTCCTCACCCTTTCATGTTCACCAATAGTTTCCATTCCCATTATCCTACAAATTAGTTTAGATTAAAATCGAAAGTTATTCACTATTGATTTGGTACATCTATTAAGAAACAATAAATAATAAAAATAATATTTCTATATTAACTTTTGATTTTATTAAATTTAATGTTTTGAAAAATGTATTACATGATAAATAATATTTAATAGGAAGGGTAAAAAGTGACACATAAGATAGATTATCTCTTAATTTTTTAGATTGAATAAGTATGATTAGACAATTATTTTTAGAATAATAAATAACTATTGTTGAAAGAATGAAGTACATAAACGCTTCGAATGAAATTTGATTTTCCTTGAAGAATGTATCATGATTTTTTTCTTATGATAATCGATTCAACCTGTGATAAAAAGATATATTCAGAGTAATATGAAAAATAACTTTCTTTTGTAGTAAACACACCCTTGATCTCTATTCTTTTGGTCATGTGGGACATTGGGACTTGGTCTCACTAACTTTTTCCCCACTAGGTTCCTAACTTCAGCCTGCCAGCATTTTCGCGTATTAGGCTTTAAGGTATTACTCACAGTACCTTCCACTTTCCTTTCTTCTTCCTAGCTCCTGCACATGGATCCAAGACAAATAATATTATTCTTGTGAAGATATTTGATTCCATAAGAAGCATTTTAAAAAGATTCGTGATTTTAAATGCACATTTTTGTGGATATAAAATAATGTTGTTAGCATTAAAATGAGGATTCTAATATATAGCAGTTCTTTTTTTTTTTCAAGATGTGTCATTCTTTCTTCCATATACAAGAAAGGAAATTGTTATAAAGTAGTTGTCGGTACAATGATATTTACTCTCACCAGTCACCAATGTGCCATGTCTGGTCTTTCTTAATAAGATTAAGAACCGATCTGAGTCTTTATGAAACTCTGCCGATTCGCGGTGGTATTGTAACTTATCAAAATGACAAGTTTGAGCTCGATAGCCGGAAATTTTTGTTATTTAATTGAATTGAGCGCTCAAATGAATTCGTTTTTCTTGAAGAGTTGAGCACTTCAATTAGTTTATCTTATCCAACTGCATATTACGTGACACGTTCAAAGATCTTAACTTTTTAAAACAATAAAGAAGCATTTACTTGTTTGTTCTCTGACTCGATGATGGTGAATGTGATTGATGATGTAGATTATCAATTGGACAATCCCCAGGTCAACAGATTTCAATGGTTTTCTTGCCTTGTAAGTTTATTTTAAGGGACAGCACATGGTCCTCATGTTTGAACGGGTGAAAGTCAGAGGATGAACAAGACCTGGATTGTTGATTAATTTCATATTTTATTGTTGAGTAAGCGTTATGACAATGGTAACCCTAACTGGAATCAATGCCAAGTCTTAAATTAGACGTGAAATGAGACAGTTCATTAGTATGCCAGTTTAATTTTTAAATAACTTAGTACTTCACCTGAATCAATGGCATAATTTGCAGGGATGAAAATTGAAACTGATTCATCTTCATTTTACCAGTACATTCCATGTCCAGGAAACTATCTGTAAAGACAACATCTTGACTTTTGGAGATTTAAAAAAACTTAACTGACTAGTGCTTGTGAGATTCCACGTTTTCAGTGAATTGGTTTCATATGTTGATCATGTGCTTTTTCATGACTCTGGTAGGGCATACATTTTCATTCTGACGATGTTCTAAGATATTTTATCTATATATTCAATCAATTCTATTCCCAGAAAAGAAATAATTTTATCCTCTCCCTCCACCCTAAAAATTTTGCCATATGCTCCTTCCTTCTACCTCTTTCTCTACGATTATCTTCAGTATGTCGTCTTTATACTAACTTCTTCTTTATACCTGTCTCTCAATCAGTTTCAAGATGTAATCCTTCCAGATACCTCTCTGGACGATGTGGTGGAACTACCAGAATTGGTGTGCTCGTTGGAGGTATATTTCTTTCTTTTTTGGGTTAACTTATTCAGAAAATGTCACTTCTCAACTCGTTTAATGTAACGAGCTTGCAAGCTTATCACAGATGGGTTCTGTGTTCTTCATATGTACGAAGATTTTTGCACAAGAGCTGCCGACTGATCAGTCATCACTAAACTTCCAAGCCTGCTTACTTTTACAGCCGTTTGATTTAATATAACTAGTGAGTTTGATCTCTTTCCTGGTCAAATGAAATTTCGACCACCTACAGGGATTATTGCTGGAGCTGGTTTAATGGCTGCTTTGGCTGTTCTTTGCTACTGCATTCGAAGACGTTCTGCATCTCTCAAGAAAAGAATGAGCGCAAGACGCCTTCTCTCTGAAGCTGCAGGCAGCAACAGTGTTCATGTATTTCAATACAAAGAAATTGAGAGAGCAACAAATAGTTTCTCTGAGAAACAGAGGCTGGGCATAGGGGCTTATGGCACAGTTTATGCTGGAAAGCTCCACAGTGATGAATGGGTTGCAATTAAGAAACTAAGACACCGGGATCCGGATGGTGTTGAACAAGTGATGAATGAGGTTAAGC</genome_strand>
        <mrna_strand>AGAAATTGAAGAATACAGGGTGTGGAACTGTGATTTCGTCCATCTTGATTGGTATGGATAATGATACAATGAAGAGTTCTGCCATGTTTATCGAGTTTCAGACGATGGAATTAGCGTGGGGATTGGAAGGGGATTGTGCATGTCATAACGATGCAAATTGTACCAACGTTTCTCTCCCGGGGAACCGAAAAGGTTTCCGGTGCCGGTGTAAAGATGGATTCGTCGGTGATGGCTTCAGCGACGGTGATGGCTGCCGGAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAAGATGTAATCCTTCCAGATACCTCTCTGGACGATGTGGTGGAACTACCAGAATTGGTGTGCTCGTTGGAG.............................................................................................................................................................................................................................................................GGATTATTGCTGGAGCTGGTTTAATGGCTGCTTTGGCTGTTCTTTGCTACTGCATTCGAAGACGTTCTGCATCTCTCAAGAAAAGAATGAGCGCAAGACGCCTTCTCTCTGAAGCTGCAGGCAGCAACAGTGTTCATGTATTTCAATACAAAGAAATTGAGAGAGCAACAAATAGTTTCTCTGAGAAACAGAGGCTGGGCATAGGGGCTTATGGCACAGTTTATGCTGGAAAGCTCCACAGTGATGAATGGGTTGCAATTAAGAAACTAAGACACCGGGATCCGGATGGTGTTGAACAAGTGATGAATGAGGTTAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E378893" ref_strand="+" ref_description="SGN-E378893 	[TUS-1-C3]">
      <seq>aagtttcaagatgtaatccttccagatacctctctggacgatgtggtggaactaccagaattggtgtgctcgttggagggattattgctggagctggtttaatggctgctttggctgttctttgctactgcattcgaagacgttctgcatctctcaagaaaagaatgagcgcaagacgccttctctctgaagctgcaggcagcaacagtgttcatgtatttcaatacaaagaaattgagagagcaacaaatagtttctctgagaaacagaggctgggcataggggcttatggcacagtttatgctggaaagctccacagtgatgaatgggttgcaattaagaaactaagacaccgggatccggatggtgttgaacaagtgatgaatgaggttaagcttttgtcttctgtaagtcatccaaacttagtccgcctcttgggttgttgtatagaaaatggtgaacagattcttgtttatgaatttatgcccaacggaactctagctcagcatctacagagagaaaggagttcaggacttccgtggacaatacgtctcactatcgcaacagaaactgctcatgcgattgctcaccttcactcagcaatgaatccaccaatataccacagggatatcaaatccagtaacatactattggattacaacttcaactcaaaagttgcagactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="27965" stop="29501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28264" g_stop="28341" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28342" i_stop="28594" i_length="253">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28595" g_stop="29201" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="685" r_length="607" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E378893" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28264" e_stop="28341"/>
          <exon e_start="28595" e_stop="29201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTTCAAGATGTAATCCTTCCAGATACCTCTCTGGACGATGTGGTGGAACTACCAGAATTGGTGTGCTCGTTGGAGGTATATTTCTTTCTTTTTTGGGTTAACTTATTCAGAAAATGTCACTTCTCAACTCGTTTAATGTAACGAGCTTGCAAGCTTATCACAGATGGGTTCTGTGTTCTTCATATGTACGAAGATTTTTGCACAAGAGCTGCCGACTGATCAGTCATCACTAAACTTCCAAGCCTGCTTACTTTTACAGCCGTTTGATTTAATATAACTAGTGAGTTTGATCTCTTTCCTGGTCAAATGAAATTTCGACCACCTACAGGGATTATTGCTGGAGCTGGTTTAATGGCTGCTTTGGCTGTTCTTTGCTACTGCATTCGAAGACGTTCTGCATCTCTCAAGAAAAGAATGAGCGCAAGACGCCTTCTCTCTGAAGCTGCAGGCAGCAACAGTGTTCATGTATTTCAATACAAAGAAATTGAGAGAGCAACAAATAGTTTCTCTGAGAAACAGAGGCTGGGCATAGGGGCTTATGGCACAGTTTATGCTGGAAAGCTCCACAGTGATGAATGGGTTGCAATTAAGAAACTAAGACACCGGGATCCGGATGGTGTTGAACAAGTGATGAATGAGGTTAAGCTTTTGTCTTCTGTAAGTCATCCAAACTTAGTCCGCCTCTTGGGTTGTTGTATAGAAAATGGTGAACAGATTCTTGTTTATGAATTTATGCCCAACGGAACTCTAGCTCAGCATCTACAGAGAGAAAGGAGTTCAGGACTTCCGTGGACAATACGTCTCACTATCGCAACAGAAACTGCTCATGCGATTGCTCACCTTCACTCAGCAATGAATCCACCAATATACCACAGGGATATCAAATCAAGTAACATACTATTGGATTACAACTTCAACTCAAAAGTTGCAGACTT</genome_strand>
        <mrna_strand>AAGTTTCAAGATGTAATCCTTCCAGATACCTCTCTGGACGATGTGGTGGAACTACCAGAATTGGTGTGCTCGTTGGAG.............................................................................................................................................................................................................................................................GGATTATTGCTGGAGCTGGTTTAATGGCTGCTTTGGCTGTTCTTTGCTACTGCATTCGAAGACGTTCTGCATCTCTCAAGAAAAGAATGAGCGCAAGACGCCTTCTCTCTGAAGCTGCAGGCAGCAACAGTGTTCATGTATTTCAATACAAAGAAATTGAGAGAGCAACAAATAGTTTCTCTGAGAAACAGAGGCTGGGCATAGGGGCTTATGGCACAGTTTATGCTGGAAAGCTCCACAGTGATGAATGGGTTGCAATTAAGAAACTAAGACACCGGGATCCGGATGGTGTTGAACAAGTGATGAATGAGGTTAAGCTTTTGTCTTCTGTAAGTCATCCAAACTTAGTCCGCCTCTTGGGTTGTTGTATAGAAAATGGTGAACAGATTCTTGTTTATGAATTTATGCCCAACGGAACTCTAGCTCAGCATCTACAGAGAGAAAGGAGTTCAGGACTTCCGTGGACAATACGTCTCACTATCGCAACAGAAACTGCTCATGCGATTGCTCACCTTCACTCAGCAATGAATCCACCAATATACCACAGGGATATCAAATCCAGTAACATACTATTGGATTACAACTTCAACTCAAAAGTTGCAGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E200341" ref_strand="+" ref_description="SGN-E200341 	[cLEC-1-K11]">
      <seq>aagtttcaagatgtaatccttccagatacctctctggacgatgtggtggaactaccagaattggtgtgctcgttggagggattattgctggagctggtttaatggctgctttggctgttctttgctactgcattcgaagacgttctgcatctctcaagaaaagaatgagcgcaagacgccttctctctgaagctgcaggcagcaacagtgttcatgtatttcaatacaaagaaattgagagagcaacaaatagtttctctgagaaacagaggctgggcataggggcttatggcacagtttatgctggaaagctccacagtgatgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="27965" stop="29144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28264" g_stop="28341" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28342" i_stop="28594" i_length="253">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28595" g_stop="28844" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="328" r_length="250" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E200341" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28264" e_stop="28341"/>
          <exon e_start="28595" e_stop="28844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTTCAAGATGTAATCCTTCCAGATACCTCTCTGGACGATGTGGTGGAACTACCAGAATTGGTGTGCTCGTTGGAGGTATATTTCTTTCTTTTTTGGGTTAACTTATTCAGAAAATGTCACTTCTCAACTCGTTTAATGTAACGAGCTTGCAAGCTTATCACAGATGGGTTCTGTGTTCTTCATATGTACGAAGATTTTTGCACAAGAGCTGCCGACTGATCAGTCATCACTAAACTTCCAAGCCTGCTTACTTTTACAGCCGTTTGATTTAATATAACTAGTGAGTTTGATCTCTTTCCTGGTCAAATGAAATTTCGACCACCTACAGGGATTATTGCTGGAGCTGGTTTAATGGCTGCTTTGGCTGTTCTTTGCTACTGCATTCGAAGACGTTCTGCATCTCTCAAGAAAAGAATGAGCGCAAGACGCCTTCTCTCTGAAGCTGCAGGCAGCAACAGTGTTCATGTATTTCAATACAAAGAAATTGAGAGAGCAACAAATAGTTTCTCTGAGAAACAGAGGCTGGGCATAGGGGCTTATGGCACAGTTTATGCTGGAAAGCTCCACAGTGATGAATG</genome_strand>
        <mrna_strand>AAGTTTCAAGATGTAATCCTTCCAGATACCTCTCTGGACGATGTGGTGGAACTACCAGAATTGGTGTGCTCGTTGGAG.............................................................................................................................................................................................................................................................GGATTATTGCTGGAGCTGGTTTAATGGCTGCTTTGGCTGTTCTTTGCTACTGCATTCGAAGACGTTCTGCATCTCTCAAGAAAAGAATGAGCGCAAGACGCCTTCTCTCTGAAGCTGCAGGCAGCAACAGTGTTCATGTATTTCAATACAAAGAAATTGAGAGAGCAACAAATAGTTTCTCTGAGAAACAGAGGCTGGGCATAGGGGCTTATGGCACAGTTTATGCTGGAAAGCTCCACAGTGATGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E209172" ref_strand="+" ref_description="SGN-E209172 	[cLEC-38-L13]">
      <seq>gaaacagaggctgggcataggggcttatggcacagtttatgctggaaagctccacagtgatgaatgggttgcaattaagaaactaagacaccgggatccggatggtgttgaacaagtgatgaatgaggttaagcttttgtcttctgtaagtcatccaaacttagtccgcctcttgggttgttgtatagaaaatggtgaacagattcttgtttatgaatttatgcccaacggaactctagctcagcatctacagagagaaaggagttcaggacttccgtggacaatacgtctcactatcgcaacagaaactgctcatgcgattgctcaccttctctcagcaatgaatccaccaatataccacagggatatcaaatcaagtaacatactattggattacaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="28479" stop="29479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28779" g_stop="29179" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E209172" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28779" e_stop="29179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACAGAGGCTGGGCATAGGGGCTTATGGCACAGTTTATGCTGGAAAGCTCCACAGTGATGAATGGGTTGCAATTAAGAAACTAAGACACCGGGATCCGGATGGTGTTGAACAAGTGATGAATGAGGTTAAGCTTTTGTCTTCTGTAAGTCATCCAAACTTAGTCCGCCTCTTGGGTTGTTGTATAGAAAATGGTGAACAGATTCTTGTTTATGAATTTATGCCCAACGGAACTCTAGCTCAGCATCTACAGAGAGAAAGGAGTTCAGGACTTCCGTGGACAATACGTCTCACTATCGCAACAGAAACTGCTCATGCGATTGCTCACCTTCACTCAGCAATGAATCCACCAATATACCACAGGGATATCAAATCAAGTAACATACTATTGGATTACAACT</genome_strand>
        <mrna_strand>GAAACAGAGGCTGGGCATAGGGGCTTATGGCACAGTTTATGCTGGAAAGCTCCACAGTGATGAATGGGTTGCAATTAAGAAACTAAGACACCGGGATCCGGATGGTGTTGAACAAGTGATGAATGAGGTTAAGCTTTTGTCTTCTGTAAGTCATCCAAACTTAGTCCGCCTCTTGGGTTGTTGTATAGAAAATGGTGAACAGATTCTTGTTTATGAATTTATGCCCAACGGAACTCTAGCTCAGCATCTACAGAGAGAAAGGAGTTCAGGACTTCCGTGGACAATACGTCTCACTATCGCAACAGAAACTGCTCATGCGATTGCTCACCTTCTCTCAGCAATGAATCCACCAATATACCACAGGGATATCAAATCAAGTAACATACTATTGGATTACAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E232983" ref_strand="+" ref_description="SGN-E232983 	[cLED-6-B9]">
      <seq>gatgaatgggttgcaattaagaaactaagacaccgggatccggatggtgttgaacaagtgatgaatgaggttaagcttttgtcttctgtaagtcatccaaacttagtccgcctcttgggttgttgtatagaaaatggtgaacagattcttgtttatgaatttatgcccaacggaactctagctcagcatctacagagagaaaggagttcaggacttccgtggacaatacgtctcactatcgcaacagaaactgctcatgcgattgctcaccttcactcagcaatgaatccaccaatataccacagggatatcaaatcaagtaacatactattggattacaacttcaactcaaaagttgcagactttggtctttccagatttggcatgacagatgattcccacatttctacagcaccacaaggtactccaggttatgtggatcctcagtaccatcagaattaccatctttccgataagagtgatgtgtacagcttcggggtggttcttgtagaaatcattacagcaatgaaaagtggtgatttctctagatcacacagtgagatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="28537" stop="29700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28837" g_stop="29400" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="564" r_length="564" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E232983" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28837" e_stop="29400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAATGGGTTGCAATTAAGAAACTAAGACACCGGGATCCGGATGGTGTTGAACAAGTGATGAATGAGGTTAAGCTTTTGTCTTCTGTAAGTCATCCAAACTTAGTCCGCCTCTTGGGTTGTTGTATAGAAAATGGTGAACAGATTCTTGTTTATGAATTTATGCCCAACGGAACTCTAGCTCAGCATCTACAGAGAGAAAGGAGTTCAGGACTTCCGTGGACAATACGTCTCACTATCGCAACAGAAACTGCTCATGCGATTGCTCACCTTCACTCAGCAATGAATCCACCAATATACCACAGGGATATCAAATCAAGTAACATACTATTGGATTACAACTTCAACTCAAAAGTTGCAGACTTTGGTCTTTCCAGATTTGGCATGACAGATGATTCCCACATTTCTACAGCACCACAAGGTACTCCAGGTTATGTGGATCCTCAGTACCATCAGAATTACCATCTTTCCGATAAGAGTGATGTGTACAGCTTCGGGGTGGTTCTTGTAGAAATCATTACAGCAATGAAAGTGGTTGATTTCTCTAGATCACACAGTGAGATT</genome_strand>
        <mrna_strand>GATGAATGGGTTGCAATTAAGAAACTAAGACACCGGGATCCGGATGGTGTTGAACAAGTGATGAATGAGGTTAAGCTTTTGTCTTCTGTAAGTCATCCAAACTTAGTCCGCCTCTTGGGTTGTTGTATAGAAAATGGTGAACAGATTCTTGTTTATGAATTTATGCCCAACGGAACTCTAGCTCAGCATCTACAGAGAGAAAGGAGTTCAGGACTTCCGTGGACAATACGTCTCACTATCGCAACAGAAACTGCTCATGCGATTGCTCACCTTCACTCAGCAATGAATCCACCAATATACCACAGGGATATCAAATCAAGTAACATACTATTGGATTACAACTTCAACTCAAAAGTTGCAGACTTTGGTCTTTCCAGATTTGGCATGACAGATGATTCCCACATTTCTACAGCACCACAAGGTACTCCAGGTTATGTGGATCCTCAGTACCATCAGAATTACCATCTTTCCGATAAGAGTGATGTGTACAGCTTCGGGGTGGTTCTTGTAGAAATCATTACAGCAATGAAAAGTGGTGATTTCTCTAGATCACACAGTGAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E235480" ref_strand="+" ref_description="SGN-E235480 	[cLED-11-C10]">
      <seq>gatgaatgggttgcaattaagaaactaagacaccgggatccggatggtgttgaacaagtgatgaatgaggttaagcttttgtcttctgtaagtcatccaaacttagtccgcctcttgggttgttgtatagaaaatggtgaacagattcttgtttatgaatttatgcccaacggaactctagctcagcatctacagagagaaaggagttcaggacttccgtggacaatacgtctcactatcgcaacagaaactgctcatgcgattgctcaccttcactcagcaatgaatccaccaatataccacagggatatcaaatcaagtaacatactattggattacaacttcaactcaaaagttgcagactttggtctttccagatttggcatgacagatgattcccacatttctacagcaccacaaggtactccaggttatgtggatcctcagtaccatcagaattaccatctttccgataagagtgatgtgtacagcttcggggtggttcttgtagaaatcattacagcaatgaaagtggttgatttctctagatcacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="28537" stop="29692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28837" g_stop="29392" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E235480" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28837" e_stop="29392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAATGGGTTGCAATTAAGAAACTAAGACACCGGGATCCGGATGGTGTTGAACAAGTGATGAATGAGGTTAAGCTTTTGTCTTCTGTAAGTCATCCAAACTTAGTCCGCCTCTTGGGTTGTTGTATAGAAAATGGTGAACAGATTCTTGTTTATGAATTTATGCCCAACGGAACTCTAGCTCAGCATCTACAGAGAGAAAGGAGTTCAGGACTTCCGTGGACAATACGTCTCACTATCGCAACAGAAACTGCTCATGCGATTGCTCACCTTCACTCAGCAATGAATCCACCAATATACCACAGGGATATCAAATCAAGTAACATACTATTGGATTACAACTTCAACTCAAAAGTTGCAGACTTTGGTCTTTCCAGATTTGGCATGACAGATGATTCCCACATTTCTACAGCACCACAAGGTACTCCAGGTTATGTGGATCCTCAGTACCATCAGAATTACCATCTTTCCGATAAGAGTGATGTGTACAGCTTCGGGGTGGTTCTTGTAGAAATCATTACAGCAATGAAAGTGGTTGATTTCTCTAGATCACACA</genome_strand>
        <mrna_strand>GATGAATGGGTTGCAATTAAGAAACTAAGACACCGGGATCCGGATGGTGTTGAACAAGTGATGAATGAGGTTAAGCTTTTGTCTTCTGTAAGTCATCCAAACTTAGTCCGCCTCTTGGGTTGTTGTATAGAAAATGGTGAACAGATTCTTGTTTATGAATTTATGCCCAACGGAACTCTAGCTCAGCATCTACAGAGAGAAAGGAGTTCAGGACTTCCGTGGACAATACGTCTCACTATCGCAACAGAAACTGCTCATGCGATTGCTCACCTTCACTCAGCAATGAATCCACCAATATACCACAGGGATATCAAATCAAGTAACATACTATTGGATTACAACTTCAACTCAAAAGTTGCAGACTTTGGTCTTTCCAGATTTGGCATGACAGATGATTCCCACATTTCTACAGCACCACAAGGTACTCCAGGTTATGTGGATCCTCAGTACCATCAGAATTACCATCTTTCCGATAAGAGTGATGTGTACAGCTTCGGGGTGGTTCTTGTAGAAATCATTACAGCAATGAAAGTGGTTGATTTCTCTAGATCACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E237529" ref_strand="+" ref_description="SGN-E237529 	[cLED-19-D9]">
      <seq>gatgaatgggttgcaattaagaaactaagacaccgggatccggatggtgttgaacaagtgatgaatgaggttaagcttttgtcttctgtaagtcatccaaacttagtccgcctcttgggttgttgtatagaaaatggtgaacagattcttgtttatgaatttatgcccaacggaactctagctcagcatctacagagagaaaggagttcaggacttccgtggacaatacgtctcactatcgcaacagaaactgctcatgcgattgctcaccttcactcagcaatgaatccaccaatataccacagggatatcaaatcaagtaacatactattggattacaacttcaactcaaaagttgcagactttggtctttccagatttggcatgacagatgattcccacatttctacagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="28537" stop="29550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28837" g_stop="29250" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E237529" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28837" e_stop="29250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAATGGGTTGCAATTAAGAAACTAAGACACCGGGATCCGGATGGTGTTGAACAAGTGATGAATGAGGTTAAGCTTTTGTCTTCTGTAAGTCATCCAAACTTAGTCCGCCTCTTGGGTTGTTGTATAGAAAATGGTGAACAGATTCTTGTTTATGAATTTATGCCCAACGGAACTCTAGCTCAGCATCTACAGAGAGAAAGGAGTTCAGGACTTCCGTGGACAATACGTCTCACTATCGCAACAGAAACTGCTCATGCGATTGCTCACCTTCACTCAGCAATGAATCCACCAATATACCACAGGGATATCAAATCAAGTAACATACTATTGGATTACAACTTCAACTCAAAAGTTGCAGACTTTGGTCTTTCCAGATTTGGCATGACAGATGATTCCCACATTTCTACAGCA</genome_strand>
        <mrna_strand>GATGAATGGGTTGCAATTAAGAAACTAAGACACCGGGATCCGGATGGTGTTGAACAAGTGATGAATGAGGTTAAGCTTTTGTCTTCTGTAAGTCATCCAAACTTAGTCCGCCTCTTGGGTTGTTGTATAGAAAATGGTGAACAGATTCTTGTTTATGAATTTATGCCCAACGGAACTCTAGCTCAGCATCTACAGAGAGAAAGGAGTTCAGGACTTCCGTGGACAATACGTCTCACTATCGCAACAGAAACTGCTCATGCGATTGCTCACCTTCACTCAGCAATGAATCCACCAATATACCACAGGGATATCAAATCAAGTAACATACTATTGGATTACAACTTCAACTCAAAAGTTGCAGACTTTGGTCTTTCCAGATTTGGCATGACAGATGATTCCCACATTTCTACAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E237644" ref_strand="+" ref_description="SGN-E237644 	[cLED-19-O21]">
      <seq>ccgcctcttgggttgttgtatagaaaatggtgaacagattcttgtttatgaatttatgcccaacggaactctagctcagcatctacagagagaaaggagttcaggacttccgtggacaatacgtctcactatcgcaacagaaactgctcatgcgattgctcaccttcactcagcaatgaatccaccaatataccacagggatatcaaatcaagtaacatactattggattacaacttcaactcaaaagttgcagactttggtctttccagatttggcatgacagatgattcccacatttctacagcaccacaaggtactccaggttatgtggatcctcagtaccatcagaattaccatctttccgataagagtgatgtgtacagcttcggggtggttcttgtagaaatcattacagcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="28644" stop="29664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28944" g_stop="29364" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E237644" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28944" e_stop="29364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCCTCTTGGGTTGTTGTATAGAAAATGGTGAACAGATTCTTGTTTATGAATTTATGCCCAACGGAACTCTAGCTCAGCATCTACAGAGAGAAAGGAGTTCAGGACTTCCGTGGACAATACGTCTCACTATCGCAACAGAAACTGCTCATGCGATTGCTCACCTTCACTCAGCAATGAATCCACCAATATACCACAGGGATATCAAATCAAGTAACATACTATTGGATTACAACTTCAACTCAAAAGTTGCAGACTTTGGTCTTTCCAGATTTGGCATGACAGATGATTCCCACATTTCTACAGCACCACAAGGTACTCCAGGTTATGTGGATCCTCAGTACCATCAGAATTACCATCTTTCCGATAAGAGTGATGTGTACAGCTTCGGGGTGGTTCTTGTAGAAATCATTACAGCAATG</genome_strand>
        <mrna_strand>CCGCCTCTTGGGTTGTTGTATAGAAAATGGTGAACAGATTCTTGTTTATGAATTTATGCCCAACGGAACTCTAGCTCAGCATCTACAGAGAGAAAGGAGTTCAGGACTTCCGTGGACAATACGTCTCACTATCGCAACAGAAACTGCTCATGCGATTGCTCACCTTCACTCAGCAATGAATCCACCAATATACCACAGGGATATCAAATCAAGTAACATACTATTGGATTACAACTTCAACTCAAAAGTTGCAGACTTTGGTCTTTCCAGATTTGGCATGACAGATGATTCCCACATTTCTACAGCACCACAAGGTACTCCAGGTTATGTGGATCCTCAGTACCATCAGAATTACCATCTTTCCGATAAGAGTGATGTGTACAGCTTCGGGGTGGTTCTTGTAGAAATCATTACAGCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E368013" ref_strand="+" ref_description="SGN-E368013 	[TUS-22-H3]">
      <seq>cgcctcttgggatgctgtataaaaaacggtgaacagattcttgttcatgaatttatgcccaacggaactctatctcatcatttacagagagataggatatcaggacttacgtggacagtacttgtcactatggtaacggatactgctcatgcgattgctgaccttcactcagcattgaatccaccaatataccacagggatataaaatcaggttgcatactattggattacaacttcaactcagaagttgcatactttggtctttccagatttggcatgacagatgattcccacatttctacagcaccacaaggtactccaggttatgtggatcctcagtaccatcagaattaccatctttccgataagagtgatgtgtacagcttcggggtggttcttgtagaaatcattacagcaatgaaagtggttgatttctctagatcacacagtgagattaatttggctgcacttgcaatagacagaataggtaagggtcgtgtggatgagatcatcgatccatttctagagccacacagagatgcatggactctatcatcagttcatagagttgcagagcttgcttttagatgccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="28645" stop="29839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28945" g_stop="29539" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="595" r_length="595" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E368013" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28945" e_stop="29539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCTCTTGGGTTGTTGTATAGAAAATGGTGAACAGATTCTTGTTTATGAATTTATGCCCAACGGAACTCTAGCTCAGCATCTACAGAGAGAAAGGAGTTCAGGACTTCCGTGGACAATACGTCTCACTATCGCAACAGAAACTGCTCATGCGATTGCTCACCTTCACTCAGCAATGAATCCACCAATATACCACAGGGATATCAAATCAAGTAACATACTATTGGATTACAACTTCAACTCAAAAGTTGCAGACTTTGGTCTTTCCAGATTTGGCATGACAGATGATTCCCACATTTCTACAGCACCACAAGGTACTCCAGGTTATGTGGATCCTCAGTACCATCAGAATTACCATCTTTCCGATAAGAGTGATGTGTACAGCTTCGGGGTGGTTCTTGTAGAAATCATTACAGCAATGAAAGTGGTTGATTTCTCTAGATCACACAGTGAGATTAATTTGGCTGCACTTGCAATAGACAGAATAGGTAAGGGTCGTGTGGATGAGATCATCGATCCATTTCTAGAGCCACACAGAGATGCATGGACTCTATCATCAGTTCATAGAGTTGCAGAGCTTGCTTTTAGATGCCTTG</genome_strand>
        <mrna_strand>CGCCTCTTGGGATGCTGTATAAAAAACGGTGAACAGATTCTTGTTCATGAATTTATGCCCAACGGAACTCTATCTCATCATTTACAGAGAGATAGGATATCAGGACTTACGTGGACAGTACTTGTCACTATGGTAACGGATACTGCTCATGCGATTGCTGACCTTCACTCAGCATTGAATCCACCAATATACCACAGGGATATAAAATCAGGTTGCATACTATTGGATTACAACTTCAACTCAGAAGTTGCATACTTTGGTCTTTCCAGATTTGGCATGACAGATGATTCCCACATTTCTACAGCACCACAAGGTACTCCAGGTTATGTGGATCCTCAGTACCATCAGAATTACCATCTTTCCGATAAGAGTGATGTGTACAGCTTCGGGGTGGTTCTTGTAGAAATCATTACAGCAATGAAAGTGGTTGATTTCTCTAGATCACACAGTGAGATTAATTTGGCTGCACTTGCAATAGACAGAATAGGTAAGGGTCGTGTGGATGAGATCATCGATCCATTTCTAGAGCCACACAGAGATGCATGGACTCTATCATCAGTTCATAGAGTTGCAGAGCTTGCTTTTAGATGCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E237648" ref_strand="+" ref_description="SGN-E237648 	[cLED-19-A14]">
      <seq>gcctcttgggttgttgtatagaaaatggtgaacagattcttgtttatgaatttatgcccaacggaactctagctcagcatctacagagagaaaggagttcaggacttccgtggacaatacgtctcactatcgcaacagaaactgctcatgcgattgctcaccttcactcagcaatgaatccaccaatataccacagggatatcaaatcaagtaacatactattggattacaacttcaactcaaaagttgcagactttggtctttccagatttggcatgacagatgattcccaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="28646" stop="29539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28946" g_stop="29239" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E237648" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28946" e_stop="29239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCTTGGGTTGTTGTATAGAAAATGGTGAACAGATTCTTGTTTATGAATTTATGCCCAACGGAACTCTAGCTCAGCATCTACAGAGAGAAAGGAGTTCAGGACTTCCGTGGACAATACGTCTCACTATCGCAACAGAAACTGCTCATGCGATTGCTCACCTTCACTCAGCAATGAATCCACCAATATACCACAGGGATATCAAATCAAGTAACATACTATTGGATTACAACTTCAACTCAAAAGTTGCAGACTTTGGTCTTTCCAGATTTGGCATGACAGATGATTCCCACA</genome_strand>
        <mrna_strand>GCCTCTTGGGTTGTTGTATAGAAAATGGTGAACAGATTCTTGTTTATGAATTTATGCCCAACGGAACTCTAGCTCAGCATCTACAGAGAGAAAGGAGTTCAGGACTTCCGTGGACAATACGTCTCACTATCGCAACAGAAACTGCTCATGCGATTGCTCACCTTCACTCAGCAATGAATCCACCAATATACCACAGGGATATCAAATCAAGTAACATACTATTGGATTACAACTTCAACTCAAAAGTTGCAGACTTTGGTCTTTCCAGATTTGGCATGACAGATGATTCCCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E214753" ref_strand="+" ref_description="SGN-E214753 	[cLEC-79-C7]">
      <seq>agttcaggacttccgtggacaatacgtctcactatcgcaacagaaactgctcatgcgattgctcaccttcactcagcaatgaatccaccaatataccacagggatatcaaatcaagtaacatactattggattacaacttcaactcaaaagttgcagactttggtctttccagatttggcatgacagatgattcccacatttctacagcaccacaaggtactccaggttatgtggatcctcagtaccatcagaattaccatctttccgataagagtgatgtgtacagcttcggggtggttcttgtagaaatcattacagcaatgaaagtggttgatttctctagatcacacagtgagattaatttggctgcacttgcaatagacagaataggtaagggtcgtgtggatgagatcatcgatccatttctagagccacacagagatgcatggactctatcatcagttcatagagttgcagagcttgcttttagatgccttgcatttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="28741" stop="29846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29041" g_stop="29546" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E214753" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29041" e_stop="29546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCAGGACTTCCGTGGACAATACGTCTCACTATCGCAACAGAAACTGCTCATGCGATTGCTCACCTTCACTCAGCAATGAATCCACCAATATACCACAGGGATATCAAATCAAGTAACATACTATTGGATTACAACTTCAACTCAAAAGTTGCAGACTTTGGTCTTTCCAGATTTGGCATGACAGATGATTCCCACATTTCTACAGCACCACAAGGTACTCCAGGTTATGTGGATCCTCAGTACCATCAGAATTACCATCTTTCCGATAAGAGTGATGTGTACAGCTTCGGGGTGGTTCTTGTAGAAATCATTACAGCAATGAAAGTGGTTGATTTCTCTAGATCACACAGTGAGATTAATTTGGCTGCACTTGCAATAGACAGAATAGGTAAGGGTCGTGTGGATGAGATCATCGATCCATTTCTAGAGCCACACAGAGATGCATGGACTCTATCATCAGTTCATAGAGTTGCAGAGCTTGCTTTTAGATGCCTTGCATTTCA</genome_strand>
        <mrna_strand>AGTTCAGGACTTCCGTGGACAATACGTCTCACTATCGCAACAGAAACTGCTCATGCGATTGCTCACCTTCACTCAGCAATGAATCCACCAATATACCACAGGGATATCAAATCAAGTAACATACTATTGGATTACAACTTCAACTCAAAAGTTGCAGACTTTGGTCTTTCCAGATTTGGCATGACAGATGATTCCCACATTTCTACAGCACCACAAGGTACTCCAGGTTATGTGGATCCTCAGTACCATCAGAATTACCATCTTTCCGATAAGAGTGATGTGTACAGCTTCGGGGTGGTTCTTGTAGAAATCATTACAGCAATGAAAGTGGTTGATTTCTCTAGATCACACAGTGAGATTAATTTGGCTGCACTTGCAATAGACAGAATAGGTAAGGGTCGTGTGGATGAGATCATCGATCCATTTCTAGAGCCACACAGAGATGCATGGACTCTATCATCAGTTCATAGAGTTGCAGAGCTTGCTTTTAGATGCCTTGCATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E378921" ref_strand="+" ref_description="SGN-E378921 	[TUS-1-C3]">
      <seq>attctatattctgcgtatgaagtcttaaaaattttgatacaaagagaagtgctcttctaatactctttgatattctcagtagattagaaggcaggaaaaggaggtgatagattacaggtgatccccctcagttttctacctagagcgaacttcttttttcaagtcatcatcgaccagaattacctaataatcgatttgttgaagggggactctcttcacttaaccaaggatcctgtacagaaacaggggaactgtcttttatttcctccatgattgccagtgaattcgctatcttctggggaacaatcaacctcctactccctactcctttcttagttgttgtactacgaaaagatgtctcactcatactacggggagatgagcaagaggaattcactgatgaagtcatgcatacattgtcctccaatgatgcccaactgctgagcctgatctgttccagctcgtctgccacttctgtcattgaaggcctcatatccctatgaaatgcaaggcatctaaaagcaagctctgcaactctatgaactgatgatagagtccatgcatctctgtgtggctctagaaatggatcgatgatctcatccacacgacccttacctattctgtctattgcaagtgcagccaaattaatctcactgtgtgatctagagaaatcaccactttcattgctgtaatgatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="-" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="30321" stop="29047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30047" g_stop="29347" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="699" r_length="699" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="-" ref_id="SGN-E378921" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30047" e_stop="29347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTATAATTCTGCGTATGAAGCAATAAAAATTTTGATACAAAGAGAAGTGCTCTAATAATACTCTTTGATATTCTCAGTAGATTAGAAGGCAGGAAAAGGAGGTGATAGATTACAGGTGATCCCCCTCAGTTTTCTACCTAGAGCGAACTTCTTTTTTCAAGTCATCATCGACCAGAATTACCTAATAATCGATTTGTTGAAGGGGGACTCTCTTCACTTAACCAAGGATCCTGTACAGAAACAGGGGAACTGTCTTTTATTTCCTCCATGATTGCCAGTGAATTCGCTATCTTCTGGGGAACAATCAACCTCCTACTCCCTACTCCTTTCTTAGTTGTTGTACTACGAAAAGATGTCTCACTCATACTACGGGGAGATGAGCAAGAGGAATTCACTGATGAAGTCATGCATACATTGTCCTCCAATGATGCCCAACTGCTGAGCCTGATCTGTTCCAGCTCGTCTGCCACTTCTGTCATTGAAGGCCTCATATCCCTATGAAATGCAAGGCATCTAAAAGCAAGCTCTGCAACTCTATGAACTGATGATAGAGTCCATGCATCTCTGTGTGGCTCTAGAAATGGATCGATGATCTCATCCACACGACCCTTACCTATTCTGTCTATTGCAAGTGCAGCCAAATTAATCTCACTGTGTGATCTAGAGAAATCAACCACTTTCATTGCTGTAATGATTTC</genome_strand>
        <mrna_strand>ATTCTAT-ATTCTGCGTATGAAGTCTTAAAAATTTTGATACAAAGAGAAGTGCTCTTCTAATACTCTTTGATATTCTCAGTAGATTAGAAGGCAGGAAAAGGAGGTGATAGATTACAGGTGATCCCCCTCAGTTTTCTACCTAGAGCGAACTTCTTTTTTCAAGTCATCATCGACCAGAATTACCTAATAATCGATTTGTTGAAGGGGGACTCTCTTCACTTAACCAAGGATCCTGTACAGAAACAGGGGAACTGTCTTTTATTTCCTCCATGATTGCCAGTGAATTCGCTATCTTCTGGGGAACAATCAACCTCCTACTCCCTACTCCTTTCTTAGTTGTTGTACTACGAAAAGATGTCTCACTCATACTACGGGGAGATGAGCAAGAGGAATTCACTGATGAAGTCATGCATACATTGTCCTCCAATGATGCCCAACTGCTGAGCCTGATCTGTTCCAGCTCGTCTGCCACTTCTGTCATTGAAGGCCTCATATCCCTATGAAATGCAAGGCATCTAAAAGCAAGCTCTGCAACTCTATGAACTGATGATAGAGTCCATGCATCTCTGTGTGGCTCTAGAAATGGATCGATGATCTCATCCACACGACCCTTACCTATTCTGTCTATTGCAAGTGCAGCCAAATTAATCTCACTGTGTGATCTAGAGAAATC-ACCACTTTCATTGCTGTAATGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E200342" ref_strand="+" ref_description="SGN-E200342 	[cLEC-1-K11]">
      <seq>ttttttttgcaaatactatttcacattctatatttctgcgtatgaagcaataaaatttttgatacaaagagaagtgctctaataatactctttgatattctcagtagattagaaggcaggaaaaggaggtgatagattacaggtgatccccctcagttttctacctagagcgaacttcttttttcaagtcatcatcgaccagaattacctaataatcgatttgttgaagggggactctcttcacttaaccaaggatcctgtacagaaacaggggaactgtcttttatttcctccatgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="-" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="30365" stop="29472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30071" g_stop="29772" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="-" ref_id="SGN-E200342" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30071" e_stop="29772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCATTGCAAATACTATTTCACATTCTATAATTCTGCGTATGAAGCAATAAAAATTTTGATACAAAGAGAAGTGCTCTAATAATACTCTTTGATATTCTCAGTAGATTAGAAGGCAGGAAAAGGAGGTGATAGATTACAGGTGATCCCCCTCAGTTTTCTACCTAGAGCGAACTTCTTTTTTCAAGTCATCATCGACCAGAATTACCTAATAATCGATTTGTTGAAGGGGGACTCTCTTCACTTAACCAAGGATCCTGTACAGAAACAGGGGAACTGTCTTTTATTTCCTCCATGATT</genome_strand>
        <mrna_strand>TTTTTTTTGCAAATACTATTTCACATTCTATATTTCTGCGTATGAAGCAATAAAATTTTTGATACAAAGAGAAGTGCTCTAATAATACTCTTTGATATTCTCAGTAGATTAGAAGGCAGGAAAAGGAGGTGATAGATTACAGGTGATCCCCCTCAGTTTTCTACCTAGAGCGAACTTCTTTTTTCAAGTCATCATCGACCAGAATTACCTAATAATCGATTTGTTGAAGGGGGACTCTCTTCACTTAACCAAGGATCCTGTACAGAAACAGGGGAACTGTCTTTTATTTCCTCCATGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E315105" ref_strand="+" ref_description="SGN-E315105 	[cTOA-24-I3]">
      <seq>accaaacaggcagcggtggctctccgggggcggaggcagttgatctctctggtgacggcgacaacggtagtgaaagcgctggagatgccgtccaaggctgcggacattggcctctttggactgagaaagaagcttaagaaagtagaagatgaggcagaagaattagtgaaggagggattcgaggcggcagacaagggaattgcagcggcagagaagggaattgaagcggcggagaaaggattactgacggctgagaaggggattgaagcagcggaggagaagatcgagagtacagtaagtttcggtgggttggcgcaagctggagcggtggccggagctgaatttgtcggagttttgattgccggagctgtagtcaatggtattttaggacctgaacctcaaaaatcttgaagagtttattgcttgtcatacaatttttcattgttgttatttgcaaattaagtttgatctgtgtttagctaaattcaaagcatgatcaattctattagtgtaacaattaatcctgttatataatatgtattgataaattatttaacatgtcagggtagtcaaattcttgaagatgatgtatgatgtaggattatagtcgntgtaaataacaggaaacacaacgatttcaattcatggcattgcaaatactatttcacattctataattctgcgtatgaagcaataaaaatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="-" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="31015" stop="29710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30715" g_stop="30010" g_length="706"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="705" r_length="705" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="-" ref_id="SGN-E315105" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30715" e_stop="30010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAACAGGCAGCGGTGGCTCTCCGGGGGCGGAGGCAGTTGATCTCTCTGGTGACGGCGACAACGGTAGTGAAAGCGCTGGAGATGCCGTCCAAGGCTGCGGACATTGGCCTCTTTGGACTGAGAAAGAAGCTTAAGAAAGTAGAAGATGAGGCAGAAGAATTAGTGAAGGAGGGATTCGAGGCGGCAGACAAGGGAATTGCAGCGGCAGAGAAGGGAATTGAAGCGGCGGAGAAAGGATTACTGACGGCTGAGAAGGGGATTGAAGCAGCGGAGGAGAAGATCGAGAGTACAGTAAGTTTCGGTGGGTTGGCGCAAGCTGGAGCGGTGGCCGGAGCTGAATTTGTCGGAGTTTTGATTGCCGGAGCTGTAGTCAATGGTATTTTAGGACCTGAACCTCAAAAATCTTGAAGAGTTTATTGCTTGTCATACAATTTTTCATTGTTGTTATTTGCAAATTAAGTTTGATCTGTGTTTAGCTAAATTCAAAGCATGATCAATTCTATTAGTGTAACAATTAATCCTGTTATATAATATGTATTGATAAATTATTTAACATGTCAGGGTAGTCAAATTCTTGAAGATGATGTATGATGTAGGATTATAGTCGTTGTAAATAACAGGAAACACAACGATTCAAATTCATGGCATTGCAAATACTATTTCACATTCTATAATTCTGCGTATGAAGCAATAAAAATTTTGA</genome_strand>
        <mrna_strand>ACCAAACAGGCAGCGGTGGCTCTCCGGGGGCGGAGGCAGTTGATCTCTCTGGTGACGGCGACAACGGTAGTGAAAGCGCTGGAGATGCCGTCCAAGGCTGCGGACATTGGCCTCTTTGGACTGAGAAAGAAGCTTAAGAAAGTAGAAGATGAGGCAGAAGAATTAGTGAAGGAGGGATTCGAGGCGGCAGACAAGGGAATTGCAGCGGCAGAGAAGGGAATTGAAGCGGCGGAGAAAGGATTACTGACGGCTGAGAAGGGGATTGAAGCAGCGGAGGAGAAGATCGAGAGTACAGTAAGTTTCGGTGGGTTGGCGCAAGCTGGAGCGGTGGCCGGAGCTGAATTTGTCGGAGTTTTGATTGCCGGAGCTGTAGTCAATGGTATTTTAGGACCTGAACCTCAAAAATCTTGAAGAGTTTATTGCTTGTCATACAATTTTTCATTGTTGTTATTTGCAAATTAAGTTTGATCTGTGTTTAGCTAAATTCAAAGCATGATCAATTCTATTAGTGTAACAATTAATCCTGTTATATAATATGTATTGATAAATTATTTAACATGTCAGGGTAGTCAAATTCTTGAAGATGATGTATGATGTAGGATTATAGTCGNTGTAAATAACAGGAAACACAACGATTTCAATTCATGGCATTGCAAATACTATTTCACATTCTATAATTCTGCGTATGAAGCAATAAAAA-TTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E315188" ref_strand="+" ref_description="SGN-E315188 	[cTOA-24-D2]">
      <seq>accaaacaggcagcggtggctctccgggggcggaggcagttgatctctctggtgacggcgacaacggtagtgaaagcgctggagatgccgtccaaggctgcggacattggcctctttggactgagaaagaagcttaagaaagtagaagatgaggcagaagaattagtgaaggagggattcgaggcggcagacaagggaattgcagcggcagagaagggaattgaagcggcggagaaaggattactgacggctgagaaggggattgaagcagcggaggagaagatcgagagtacagtaagtttcggtgggttggcgcaagctggagcggtggccggagctgaatttgtcggagttttgattgccggagctgtagtcaatggtattttaggacctgaacctcaaaaatcttgaagagtttattgcttgtcatacaatttttcattgttgttatttgcaaattaagtttgatctgtgtttagctaaattcaaagcatgatcaattctattagtgtaacaattaatcctgttatataatatgtattgataaattatttaacatgtcagggtagtcaaattcttgaagatgatgtatgatgtangattatagtcgttgtaataacaggaaacacaacgattcaaattcatggcattgcaaatactatttcacattctataattctgcgtatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="-" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="31015" stop="29726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30715" g_stop="30026" g_length="690"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="689" r_length="689" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="-" ref_id="SGN-E315188" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30715" e_stop="30026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAACAGGCAGCGGTGGCTCTCCGGGGGCGGAGGCAGTTGATCTCTCTGGTGACGGCGACAACGGTAGTGAAAGCGCTGGAGATGCCGTCCAAGGCTGCGGACATTGGCCTCTTTGGACTGAGAAAGAAGCTTAAGAAAGTAGAAGATGAGGCAGAAGAATTAGTGAAGGAGGGATTCGAGGCGGCAGACAAGGGAATTGCAGCGGCAGAGAAGGGAATTGAAGCGGCGGAGAAAGGATTACTGACGGCTGAGAAGGGGATTGAAGCAGCGGAGGAGAAGATCGAGAGTACAGTAAGTTTCGGTGGGTTGGCGCAAGCTGGAGCGGTGGCCGGAGCTGAATTTGTCGGAGTTTTGATTGCCGGAGCTGTAGTCAATGGTATTTTAGGACCTGAACCTCAAAAATCTTGAAGAGTTTATTGCTTGTCATACAATTTTTCATTGTTGTTATTTGCAAATTAAGTTTGATCTGTGTTTAGCTAAATTCAAAGCATGATCAATTCTATTAGTGTAACAATTAATCCTGTTATATAATATGTATTGATAAATTATTTAACATGTCAGGGTAGTCAAATTCTTGAAGATGATGTATGATGTAGGATTATAGTCGTTGTAAATAACAGGAAACACAACGATTCAAATTCATGGCATTGCAAATACTATTTCACATTCTATAATTCTGCGTATGAA</genome_strand>
        <mrna_strand>ACCAAACAGGCAGCGGTGGCTCTCCGGGGGCGGAGGCAGTTGATCTCTCTGGTGACGGCGACAACGGTAGTGAAAGCGCTGGAGATGCCGTCCAAGGCTGCGGACATTGGCCTCTTTGGACTGAGAAAGAAGCTTAAGAAAGTAGAAGATGAGGCAGAAGAATTAGTGAAGGAGGGATTCGAGGCGGCAGACAAGGGAATTGCAGCGGCAGAGAAGGGAATTGAAGCGGCGGAGAAAGGATTACTGACGGCTGAGAAGGGGATTGAAGCAGCGGAGGAGAAGATCGAGAGTACAGTAAGTTTCGGTGGGTTGGCGCAAGCTGGAGCGGTGGCCGGAGCTGAATTTGTCGGAGTTTTGATTGCCGGAGCTGTAGTCAATGGTATTTTAGGACCTGAACCTCAAAAATCTTGAAGAGTTTATTGCTTGTCATACAATTTTTCATTGTTGTTATTTGCAAATTAAGTTTGATCTGTGTTTAGCTAAATTCAAAGCATGATCAATTCTATTAGTGTAACAATTAATCCTGTTATATAATATGTATTGATAAATTATTTAACATGTCAGGGTAGTCAAATTCTTGAAGATGATGTATGATGTANGATTATAGTCGTTGT-AATAACAGGAAACACAACGATTCAAATTCATGGCATTGCAAATACTATTTCACATTCTATAATTCTGCGTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E372867" ref_strand="+" ref_description="SGN-E372867 	[TUS-32-N14]">
      <seq>tttgattgtacagagagcatagccatgtcttccacaactacttcacttacagtaaggacttacccaccccgttgtgtgctaaatgcaaacacaaatccccctaccaaacaggcagcggtggctctccgggggcggaggcagttgatctctctggtgacggcgacaacggtagtgaaagcgctggagatgccgtccaaggctgcggacattggcctctttggactgagaaagaagcttaagaaagtagaagatgaggcagaagaattagtgaaggagggattcgaggcggcagacaagggaattgcagcggcagagaagggaattgaagcggcggagaaaggattactgacggctgagaaggggattgaagcagcggaggagaagatcgagagtacagtaagtttcggtgggttggcgcaagctggagcggtggccggagctgaatttgtcggagttttgattgccggagctgtagtcaatggtattttaggacctgaacctcaaaaatcttgaagagtttattgcttgtcatacaatttttcattgttgttatttgcaaattaagtttgatctgtgtttagctaaattcaaagcatgatcaattctattagtgtaacaattaatcctgttatataatatgtattgataaattatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="-" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="31117" stop="29858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30817" g_stop="30151" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="667" r_length="667" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="-" ref_id="SGN-E372867" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30817" e_stop="30151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATTGTACAGAGAGCATAGCCATGTCTTCCACAACTACTTCACTTACAGTAAGGACTTACCCACCCCGTTGTGTGCTAAATGCAAACACAAATCCCCCTACCAAACAGGCAGCGGTGGCTCTCCGGGGGCGGAGGCAGTTGATCTCTCTGGTGACGGCGACAACGGTAGTGAAAGCGCTGGAGATGCCGTCCAAGGCTGCGGACATTGGCCTCTTTGGACTGAGAAAGAAGCTTAAGAAAGTAGAAGATGAGGCAGAAGAATTAGTGAAGGAGGGATTCGAGGCGGCAGACAAGGGAATTGCAGCGGCAGAGAAGGGAATTGAAGCGGCGGAGAAAGGATTACTGACGGCTGAGAAGGGGATTGAAGCAGCGGAGGAGAAGATCGAGAGTACAGTAAGTTTCGGTGGGTTGGCGCAAGCTGGAGCGGTGGCCGGAGCTGAATTTGTCGGAGTTTTGATTGCCGGAGCTGTAGTCAATGGTATTTTAGGACCTGAACCTCAAAAATCTTGAAGAGTTTATTGCTTGTCATACAATTTTTCATTGTTGTTATTTGCAAATTAAGTTTGATCTGTGTTTAGCTAAATTCAAAGCATGATCAATTCTATTAGTGTAACAATTAATCCTGTTATATAATATGTATTGATAAATTATTTAACATGTCAGG</genome_strand>
        <mrna_strand>TTTGATTGTACAGAGAGCATAGCCATGTCTTCCACAACTACTTCACTTACAGTAAGGACTTACCCACCCCGTTGTGTGCTAAATGCAAACACAAATCCCCCTACCAAACAGGCAGCGGTGGCTCTCCGGGGGCGGAGGCAGTTGATCTCTCTGGTGACGGCGACAACGGTAGTGAAAGCGCTGGAGATGCCGTCCAAGGCTGCGGACATTGGCCTCTTTGGACTGAGAAAGAAGCTTAAGAAAGTAGAAGATGAGGCAGAAGAATTAGTGAAGGAGGGATTCGAGGCGGCAGACAAGGGAATTGCAGCGGCAGAGAAGGGAATTGAAGCGGCGGAGAAAGGATTACTGACGGCTGAGAAGGGGATTGAAGCAGCGGAGGAGAAGATCGAGAGTACAGTAAGTTTCGGTGGGTTGGCGCAAGCTGGAGCGGTGGCCGGAGCTGAATTTGTCGGAGTTTTGATTGCCGGAGCTGTAGTCAATGGTATTTTAGGACCTGAACCTCAAAAATCTTGAAGAGTTTATTGCTTGTCATACAATTTTTCATTGTTGTTATTTGCAAATTAAGTTTGATCTGTGTTTAGCTAAATTCAAAGCATGATCAATTCTATTAGTGTAACAATTAATCCTGTTATATAATATGTATTGATAAATTATTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E285235" ref_strand="+" ref_description="SGN-E285235 	[cLER-20-F12]">
      <seq>acaactacttcacttacagtaaggacttacccaccccgttgtgtgctaaatgcaaacacaaatccccctaccaaacaggcagcggtggctctccgggggcggaggcagttgatctctctggtgacggcgacaacggtagtgaaagcgctggagatgccgtccaaggctgcggacattggcctctttggactgagaaagaagcttaagaaagtagaagatgaggcagaagaattagtgaaggagggattcgaggcggcagacaagggaattgcagcggcagagaagggaattgaagcggcggagaaaggattactgacggctgagaaggggattgaagcagcggaggagaagatcgagagtacagtaagtttcggtgggttggcgcaagctggagcggtggccggagctgaatttgtcggagttttgattgccggagctgtagtcaatggtattttaggacctgaacctcaaaaatcttgaagagtttattgcttgtcatacaatttttcattgttgttatttgcaaattaagtttgatctgtgtttagctaaattcaaagcatgatcaattctattagtgtaacaattaatcctgttatataatatgtattgataaattatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="-" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="31084" stop="29858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30784" g_stop="30152" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="-" ref_id="SGN-E285235" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30784" e_stop="30152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACTACTTCACTTACAGTAAGGACTTACCCACCCCGTTGTGTGCTAAATGCAAACACAAATCCCCCTACCAAACAGGCAGCGGTGGCTCTCCGGGGGCGGAGGCAGTTGATCTCTCTGGTGACGGCGACAACGGTAGTGAAAGCGCTGGAGATGCCGTCCAAGGCTGCGGACATTGGCCTCTTTGGACTGAGAAAGAAGCTTAAGAAAGTAGAAGATGAGGCAGAAGAATTAGTGAAGGAGGGATTCGAGGCGGCAGACAAGGGAATTGCAGCGGCAGAGAAGGGAATTGAAGCGGCGGAGAAAGGATTACTGACGGCTGAGAAGGGGATTGAAGCAGCGGAGGAGAAGATCGAGAGTACAGTAAGTTTCGGTGGGTTGGCGCAAGCTGGAGCGGTGGCCGGAGCTGAATTTGTCGGAGTTTTGATTGCCGGAGCTGTAGTCAATGGTATTTTAGGACCTGAACCTCAAAAATCTTGAAGAGTTTATTGCTTGTCATACAATTTTTCATTGTTGTTATTTGCAAATTAAGTTTGATCTGTGTTTAGCTAAATTCAAAGCATGATCAATTCTATTAGTGTAACAATTAATCCTGTTATATAATATGTATTGATAAATTATTTAACATGTCAG</genome_strand>
        <mrna_strand>ACAACTACTTCACTTACAGTAAGGACTTACCCACCCCGTTGTGTGCTAAATGCAAACACAAATCCCCCTACCAAACAGGCAGCGGTGGCTCTCCGGGGGCGGAGGCAGTTGATCTCTCTGGTGACGGCGACAACGGTAGTGAAAGCGCTGGAGATGCCGTCCAAGGCTGCGGACATTGGCCTCTTTGGACTGAGAAAGAAGCTTAAGAAAGTAGAAGATGAGGCAGAAGAATTAGTGAAGGAGGGATTCGAGGCGGCAGACAAGGGAATTGCAGCGGCAGAGAAGGGAATTGAAGCGGCGGAGAAAGGATTACTGACGGCTGAGAAGGGGATTGAAGCAGCGGAGGAGAAGATCGAGAGTACAGTAAGTTTCGGTGGGTTGGCGCAAGCTGGAGCGGTGGCCGGAGCTGAATTTGTCGGAGTTTTGATTGCCGGAGCTGTAGTCAATGGTATTTTAGGACCTGAACCTCAAAAATCTTGAAGAGTTTATTGCTTGTCATACAATTTTTCATTGTTGTTATTTGCAAATTAAGTTTGATCTGTGTTTAGCTAAATTCAAAGCATGATCAATTCTATTAGTGTAACAATTAATCCTGTTATATAATATGTATTGATAAATTATTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E372866" ref_strand="+" ref_description="SGN-E372866 	[TUS-32-N14]">
      <seq>ttttttttttaataatttatcaatacatattatataacaggattaattgttacactaatagaattgatcatgctttgaatttagctaaacacagatcaaacttaatttgcaaataacaacaatgaaaaattgtatgacaagcaataaactcttcaagatttttgaggttcaggtcctaaaataccattgactacagctccggcaatcaaaactccgacaaattcagctccggccaccgctccagcttgcgccaacccaccgaaacttactgtactctcgatcttctcctccgctgcttcaatccccttctcagccgtcagtaatcctttctccgccgcttcaattcccttctctgccgctgcaattcccttgtctgccgcctcgaatccctccttcactaattcttctgcctcatcttctactttcttaagcttctttctcagtccaaagaggccaatgtccgcagccttggacggcatctccagcgctttcactaccgttgtcgccgtcaccagagagatcaactgcctccgcccccggagagccaccgctgcctgtttggtagggggatttgtgtttgcatttagcacacaacggggtgggtaagtccttactgtaagtgaagtagttgtggaagacatggctatgctctctgtacaatcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="29858" stop="31118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30153" g_stop="30818" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E372866" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30153" e_stop="30818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACATGTTAAATAATTTATCAATACATATTATATAACAGGATTAATTGTTACACTAATAGAATTGATCATGCTTTGAATTTAGCTAAACACAGATCAAACTTAATTTGCAAATAACAACAATGAAAAATTGTATGACAAGCAATAAACTCTTCAAGATTTTTGAGGTTCAGGTCCTAAAATACCATTGACTACAGCTCCGGCAATCAAAACTCCGACAAATTCAGCTCCGGCCACCGCTCCAGCTTGCGCCAACCCACCGAAACTTACTGTACTCTCGATCTTCTCCTCCGCTGCTTCAATCCCCTTCTCAGCCGTCAGTAATCCTTTCTCCGCCGCTTCAATTCCCTTCTCTGCCGCTGCAATTCCCTTGTCTGCCGCCTCGAATCCCTCCTTCACTAATTCTTCTGCCTCATCTTCTACTTTCTTAAGCTTCTTTCTCAGTCCAAAGAGGCCAATGTCCGCAGCCTTGGACGGCATCTCCAGCGCTTTCACTACCGTTGTCGCCGTCACCAGAGAGATCAACTGCCTCCGCCCCCGGAGAGCCACCGCTGCCTGTTTGGTAGGGGGATTTGTGTTTGCATTTAGCACACAACGGGGTGGGTAAGTCCTTACTGTAAGTGAAGTAGTTGTGGAAGACATGGCTATGCTCTCTGTACAATCAAAA</genome_strand>
        <mrna_strand>TTTTTTTTTTAATAATTTATCAATACATATTATATAACAGGATTAATTGTTACACTAATAGAATTGATCATGCTTTGAATTTAGCTAAACACAGATCAAACTTAATTTGCAAATAACAACAATGAAAAATTGTATGACAAGCAATAAACTCTTCAAGATTTTTGAGGTTCAGGTCCTAAAATACCATTGACTACAGCTCCGGCAATCAAAACTCCGACAAATTCAGCTCCGGCCACCGCTCCAGCTTGCGCCAACCCACCGAAACTTACTGTACTCTCGATCTTCTCCTCCGCTGCTTCAATCCCCTTCTCAGCCGTCAGTAATCCTTTCTCCGCCGCTTCAATTCCCTTCTCTGCCGCTGCAATTCCCTTGTCTGCCGCCTCGAATCCCTCCTTCACTAATTCTTCTGCCTCATCTTCTACTTTCTTAAGCTTCTTTCTCAGTCCAAAGAGGCCAATGTCCGCAGCCTTGGACGGCATCTCCAGCGCTTTCACTACCGTTGTCGCCGTCACCAGAGAGATCAACTGCCTCCGCCCCCGGAGAGCCACCGCTGCCTGTTTGGTAGGGGGATTTGTGTTTGCATTTAGCACACAACGGGGTGGGTAAGTCCTTACTGTAAGTGAAGTAGTTGTGGAAGACATGGCTATGCTCTCTGTACAATCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E555193" ref_strand="+" ref_description="SGN-E555193 	[cTSC-6-L16]">
      <seq>cacttctttgtgattgtggtgtcaaggagtgcagacttcattttgattgtacagagagcatagccatgtcttccacaactacttcacttacagtaaggacttacccaccccgttgtgtgctaaatgcaaacacaaatccccctaccaaacaggcagcggtggctctccgggggcggaggcagttgatctctctggtgacggcgacaacggtagtgaaagcgctggagatgccgtccaaggctgcggacattggcctctttggactgagaaagaagcttaagaaagtagaagatgaggcagaagaattagtgaaggagggattcgaggcggcagacaagggaattgcagcggcagagaagggaattgaagcggcggagaaaggattactgacggctgagaaggggattgaagcagcggaggagaagatcgagagtacagtaagtttcggtgggttggcgcaagctggagcggtggccggagctgaatttgtcggagttttgattgccggagctgtagtcaatggtattttaggacctgaacctcaaaaatcttgaagagtttattgcttgtcatacaatttttcattgttgttatttgcaaattaagtttgatctgtgtttagctaaattcaaagcatgatcaattctattagtgtaacaattaatcctgttatataatatgtattgataaattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="-" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="31158" stop="29865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30858" g_stop="30157" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="702" r_length="702" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="-" ref_id="SGN-E555193" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30858" e_stop="30157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTCTTTGTGATTGTGGTGTCAAGGAGTGCAGACTTCATTTTGATTGTACAGAGAGCATAGCCATGTCTTCCACAACTACTTCACTTACAGTAAGGACTTACCCACCCCGTTGTGTGCTAAATGCAAACACAAATCCCCCTACCAAACAGGCAGCGGTGGCTCTCCGGGGGCGGAGGCAGTTGATCTCTCTGGTGACGGCGACAACGGTAGTGAAAGCGCTGGAGATGCCGTCCAAGGCTGCGGACATTGGCCTCTTTGGACTGAGAAAGAAGCTTAAGAAAGTAGAAGATGAGGCAGAAGAATTAGTGAAGGAGGGATTCGAGGCGGCAGACAAGGGAATTGCAGCGGCAGAGAAGGGAATTGAAGCGGCGGAGAAAGGATTACTGACGGCTGAGAAGGGGATTGAAGCAGCGGAGGAGAAGATCGAGAGTACAGTAAGTTTCGGTGGGTTGGCGCAAGCTGGAGCGGTGGCCGGAGCTGAATTTGTCGGAGTTTTGATTGCCGGAGCTGTAGTCAATGGTATTTTAGGACCTGAACCTCAAAAATCTTGAAGAGTTTATTGCTTGTCATACAATTTTTCATTGTTGTTATTTGCAAATTAAGTTTGATCTGTGTTTAGCTAAATTCAAAGCATGATCAATTCTATTAGTGTAACAATTAATCCTGTTATATAATATGTATTGATAAATTATTTAACAT</genome_strand>
        <mrna_strand>CACTTCTTTGTGATTGTGGTGTCAAGGAGTGCAGACTTCATTTTGATTGTACAGAGAGCATAGCCATGTCTTCCACAACTACTTCACTTACAGTAAGGACTTACCCACCCCGTTGTGTGCTAAATGCAAACACAAATCCCCCTACCAAACAGGCAGCGGTGGCTCTCCGGGGGCGGAGGCAGTTGATCTCTCTGGTGACGGCGACAACGGTAGTGAAAGCGCTGGAGATGCCGTCCAAGGCTGCGGACATTGGCCTCTTTGGACTGAGAAAGAAGCTTAAGAAAGTAGAAGATGAGGCAGAAGAATTAGTGAAGGAGGGATTCGAGGCGGCAGACAAGGGAATTGCAGCGGCAGAGAAGGGAATTGAAGCGGCGGAGAAAGGATTACTGACGGCTGAGAAGGGGATTGAAGCAGCGGAGGAGAAGATCGAGAGTACAGTAAGTTTCGGTGGGTTGGCGCAAGCTGGAGCGGTGGCCGGAGCTGAATTTGTCGGAGTTTTGATTGCCGGAGCTGTAGTCAATGGTATTTTAGGACCTGAACCTCAAAAATCTTGAAGAGTTTATTGCTTGTCATACAATTTTTCATTGTTGTTATTTGCAAATTAAGTTTGATCTGTGTTTAGCTAAATTCAAAGCATGATCAATTCTATTAGTGTAACAATTAATCCTGTTATATAATATGTATTGATAAATTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E344787" ref_strand="+" ref_description="SGN-E344787 	[cTOF-21-H2]">
      <seq>aaggacttacccaccccgttgtgtgctaaatgcaaacacaaatccccctaccaaacaggcagcggtggctctccgggggcggaggcagttgatctctctggtgacggcgacaacggtagtgaaagcgctggagatgccgtccaaggctgcggacattggcctctttggactgagaaagaagcttaagaaagtagaagatgaggcagaagaattagtgaaggagggattcgaggcggcagacaagggaattgcagcggcagagaagggaattgaagcggcggagaaaggattactgacggctgagaaggggattgaagcagcggaggagaagatcgagagtacagtaagtttcggtgggttggcgcaagctggagcggtggccggagctgaatttgtcggagttttgattgccggagctgtagtcaatggtattttaggacctgaacctcaaaaatcttgaagagtttattgcttggcatacaatttttcattggtggtatttgcaaattaagtttgatctgtgtttagcttaattcaaagcatgatcaattctattagtggaacaattaatcctggtatataatatggattgataaaatatttaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="-" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="31064" stop="29857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30764" g_stop="30157" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="-" ref_id="SGN-E344787" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30764" e_stop="30157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGACTTACCCACCCCGTTGTGTGCTAAATGCAAACACAAATCCCCCTACCAAACAGGCAGCGGTGGCTCTCCGGGGGCGGAGGCAGTTGATCTCTCTGGTGACGGCGACAACGGTAGTGAAAGCGCTGGAGATGCCGTCCAAGGCTGCGGACATTGGCCTCTTTGGACTGAGAAAGAAGCTTAAGAAAGTAGAAGATGAGGCAGAAGAATTAGTGAAGGAGGGATTCGAGGCGGCAGACAAGGGAATTGCAGCGGCAGAGAAGGGAATTGAAGCGGCGGAGAAAGGATTACTGACGGCTGAGAAGGGGATTGAAGCAGCGGAGGAGAAGATCGAGAGTACAGTAAGTTTCGGTGGGTTGGCGCAAGCTGGAGCGGTGGCCGGAGCTGAATTTGTCGGAGTTTTGATTGCCGGAGCTGTAGTCAATGGTATTTTAGGACCTGAACCTCAAAAATCTTGAAGAGTTTATTGCTTGTCATACAATTTTTCATTGTTGTTATTTGCAAATTAAGTTTGATCTGTGTTTAGCTAAATTCAAAGCATGATCAATTCTATTAGTGTAACAATTAATCCTGTTATATAATATGTATTGATAAATTATTTAACAT</genome_strand>
        <mrna_strand>AAGGACTTACCCACCCCGTTGTGTGCTAAATGCAAACACAAATCCCCCTACCAAACAGGCAGCGGTGGCTCTCCGGGGGCGGAGGCAGTTGATCTCTCTGGTGACGGCGACAACGGTAGTGAAAGCGCTGGAGATGCCGTCCAAGGCTGCGGACATTGGCCTCTTTGGACTGAGAAAGAAGCTTAAGAAAGTAGAAGATGAGGCAGAAGAATTAGTGAAGGAGGGATTCGAGGCGGCAGACAAGGGAATTGCAGCGGCAGAGAAGGGAATTGAAGCGGCGGAGAAAGGATTACTGACGGCTGAGAAGGGGATTGAAGCAGCGGAGGAGAAGATCGAGAGTACAGTAAGTTTCGGTGGGTTGGCGCAAGCTGGAGCGGTGGCCGGAGCTGAATTTGTCGGAGTTTTGATTGCCGGAGCTGTAGTCAATGGTATTTTAGGACCTGAACCTCAAAAATCTTGAAGAGTTTATTGCTTGGCATACAATTTTTCATTGGTGGTATTTGCAAATTAAGTTTGATCTGTGTTTAGCTTAATTCAAAGCATGATCAATTCTATTAGTGGAACAATTAATCCTGGTATATAATATGGATTGATAAAATATTTAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E342093" ref_strand="+" ref_description="SGN-E342093 	[cTOF-10-A21]">
      <seq>ttctttgtgattgtggtgtcaaggagtgcagacttcattttgattgtacagagagcatagccatgtcttccacaactacttcacttacagtaaggacttacccaccccgttgtgtgctaaatgcaaacacaaatccccctaccaaacaggcagcggtggctctccgggggcggaggcagttgatctctctggtgacggcgacaacggtagtgaaagcgctggagatgccgtccaaggctgcggacattggcctctttggactgagaaagaagcttaagaaagtagaagatgaggcagaagaattagtgaaggagggattcgaggcggcagacaagggaattgcagcggcagagaagggaattgaagcggcggagaaaggattactgacggctgagaaggggattgaagcagcggacgagaagatcgagagtacagtaagtttcggtgggttggcgcaagctggagcggtggccggagctgaatttgtcggagttttgattgccggagctgtagtcaatggtattttaggacctgaacctcaaaaatcttgaagagtttattgcttgtcatacaatttttcattgttgntatttgcaaattaagtttgatctgtgtttagctaaattcaaagcatgatcaattctattagtgtaacaattaatcctgttatataatatgtattgataaattattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="-" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="31155" stop="29861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30855" g_stop="30161" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="-" ref_id="SGN-E342093" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30855" e_stop="30161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTGTGATTGTGGTGTCAAGGAGTGCAGACTTCATTTTGATTGTACAGAGAGCATAGCCATGTCTTCCACAACTACTTCACTTACAGTAAGGACTTACCCACCCCGTTGTGTGCTAAATGCAAACACAAATCCCCCTACCAAACAGGCAGCGGTGGCTCTCCGGGGGCGGAGGCAGTTGATCTCTCTGGTGACGGCGACAACGGTAGTGAAAGCGCTGGAGATGCCGTCCAAGGCTGCGGACATTGGCCTCTTTGGACTGAGAAAGAAGCTTAAGAAAGTAGAAGATGAGGCAGAAGAATTAGTGAAGGAGGGATTCGAGGCGGCAGACAAGGGAATTGCAGCGGCAGAGAAGGGAATTGAAGCGGCGGAGAAAGGATTACTGACGGCTGAGAAGGGGATTGAAGCAGCGGAGGAGAAGATCGAGAGTACAGTAAGTTTCGGTGGGTTGGCGCAAGCTGGAGCGGTGGCCGGAGCTGAATTTGTCGGAGTTTTGATTGCCGGAGCTGTAGTCAATGGTATTTTAGGACCTGAACCTCAAAAATCTTGAAGAGTTTATTGCTTGTCATACAATTTTTCATTGTTGTTATTTGCAAATTAAGTTTGATCTGTGTTTAGCTAAATTCAAAGCATGATCAATTCTATTAGTGTAACAATTAATCCTGTTATATAATATGTATTGATAAATTATTTA</genome_strand>
        <mrna_strand>TTCTTTGTGATTGTGGTGTCAAGGAGTGCAGACTTCATTTTGATTGTACAGAGAGCATAGCCATGTCTTCCACAACTACTTCACTTACAGTAAGGACTTACCCACCCCGTTGTGTGCTAAATGCAAACACAAATCCCCCTACCAAACAGGCAGCGGTGGCTCTCCGGGGGCGGAGGCAGTTGATCTCTCTGGTGACGGCGACAACGGTAGTGAAAGCGCTGGAGATGCCGTCCAAGGCTGCGGACATTGGCCTCTTTGGACTGAGAAAGAAGCTTAAGAAAGTAGAAGATGAGGCAGAAGAATTAGTGAAGGAGGGATTCGAGGCGGCAGACAAGGGAATTGCAGCGGCAGAGAAGGGAATTGAAGCGGCGGAGAAAGGATTACTGACGGCTGAGAAGGGGATTGAAGCAGCGGACGAGAAGATCGAGAGTACAGTAAGTTTCGGTGGGTTGGCGCAAGCTGGAGCGGTGGCCGGAGCTGAATTTGTCGGAGTTTTGATTGCCGGAGCTGTAGTCAATGGTATTTTAGGACCTGAACCTCAAAAATCTTGAAGAGTTTATTGCTTGTCATACAATTTTTCATTGTTGNTATTTGCAAATTAAGTTTGATCTGTGTTTAGCTAAATTCAAAGCATGATCAATTCTATTAGTGTAACAATTAATCCTGTTATATAATATGTATTGATAAATTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E346895" ref_strand="+" ref_description="SGN-E346895 	[cTOF-32-O8]">
      <seq>acacacttctttgtgattgtggtgtcaaggagtgcagacttcattttgattgtacagagagcatagccatgtcttccacaactacttcacttacagtaaggacttacccaccccgttgtgtgctaaatgcaaacacaaatccccctaccaaacaggcagcggtggctctccgggggcggaggcagttgatctctctggtgacggcgacaacggtagtgaaagcgctggagatgccgtccaaggctgcggacattggcctctttggactgagaaagaagcttaagaaagtagaagatgaggcagaagaattagtgaaggagggattcgaggcggcagacaagggaattgcagcggcagagaagggaattgaagcggcggagaaaggattactgacggctgagaaggggattgaagcagcggaggagaagatcgagagtacagtaagtttcggtgggttggcgcaagctggagcggtggccggagctgaatttgtcggagttttgattgccggagctgtagtcaatggtattttaggacctgaacctcaaaaatcttgaagagtttattgcttgtcatacaatttttcattgttgttatttgcaaattaagtttgatctgtgtttagctaaattcaaagcatgatcaattctattagtgtaacaattaatcctgttatataatatgtattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="-" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="31161" stop="29873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30861" g_stop="30173" g_length="689"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="689" r_length="689" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="-" ref_id="SGN-E346895" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30861" e_stop="30173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACACTTCTTTGTGATTGTGGTGTCAAGGAGTGCAGACTTCATTTTGATTGTACAGAGAGCATAGCCATGTCTTCCACAACTACTTCACTTACAGTAAGGACTTACCCACCCCGTTGTGTGCTAAATGCAAACACAAATCCCCCTACCAAACAGGCAGCGGTGGCTCTCCGGGGGCGGAGGCAGTTGATCTCTCTGGTGACGGCGACAACGGTAGTGAAAGCGCTGGAGATGCCGTCCAAGGCTGCGGACATTGGCCTCTTTGGACTGAGAAAGAAGCTTAAGAAAGTAGAAGATGAGGCAGAAGAATTAGTGAAGGAGGGATTCGAGGCGGCAGACAAGGGAATTGCAGCGGCAGAGAAGGGAATTGAAGCGGCGGAGAAAGGATTACTGACGGCTGAGAAGGGGATTGAAGCAGCGGAGGAGAAGATCGAGAGTACAGTAAGTTTCGGTGGGTTGGCGCAAGCTGGAGCGGTGGCCGGAGCTGAATTTGTCGGAGTTTTGATTGCCGGAGCTGTAGTCAATGGTATTTTAGGACCTGAACCTCAAAAATCTTGAAGAGTTTATTGCTTGTCATACAATTTTTCATTGTTGTTATTTGCAAATTAAGTTTGATCTGTGTTTAGCTAAATTCAAAGCATGATCAATTCTATTAGTGTAACAATTAATCCTGTTATATAATATGTATTG</genome_strand>
        <mrna_strand>ACACACTTCTTTGTGATTGTGGTGTCAAGGAGTGCAGACTTCATTTTGATTGTACAGAGAGCATAGCCATGTCTTCCACAACTACTTCACTTACAGTAAGGACTTACCCACCCCGTTGTGTGCTAAATGCAAACACAAATCCCCCTACCAAACAGGCAGCGGTGGCTCTCCGGGGGCGGAGGCAGTTGATCTCTCTGGTGACGGCGACAACGGTAGTGAAAGCGCTGGAGATGCCGTCCAAGGCTGCGGACATTGGCCTCTTTGGACTGAGAAAGAAGCTTAAGAAAGTAGAAGATGAGGCAGAAGAATTAGTGAAGGAGGGATTCGAGGCGGCAGACAAGGGAATTGCAGCGGCAGAGAAGGGAATTGAAGCGGCGGAGAAAGGATTACTGACGGCTGAGAAGGGGATTGAAGCAGCGGAGGAGAAGATCGAGAGTACAGTAAGTTTCGGTGGGTTGGCGCAAGCTGGAGCGGTGGCCGGAGCTGAATTTGTCGGAGTTTTGATTGCCGGAGCTGTAGTCAATGGTATTTTAGGACCTGAACCTCAAAAATCTTGAAGAGTTTATTGCTTGTCATACAATTTTTCATTGTTGTTATTTGCAAATTAAGTTTGATCTGTGTTTAGCTAAATTCAAAGCATGATCAATTCTATTAGTGTAACAATTAATCCTGTTATATAATATGTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E211797" ref_strand="+" ref_description="SGN-E211797 	[cLEC-66-F11]">
      <seq>cacaactacttcacttacagtaaggacttacccaccccgttgtgtgctaaatgcaaacacaaatccccctaccaaacaggcagcggtggctctccgggggcggaggcagttgatctctctggtgacggcgacaacggtagtgaaagcgctggagatgccgtccaaggctgcggacattggcctctttggactgagaaagaagcttaagaaagtagaagatgaggcagaagaattagtgaaggagggattcgaggcggcagacaagggaattgcagcggcagagaagggaattgaagcggcggagaaaggattactgacggctgagaaggggattgaagcagcggaggagaagatcgagagtacagtaagtttcggtgggttggcgcaagctggagcggtggccggagctgaatttgtcggagttttgattgccggagctgtagtcaatggtattttaggacctgaacctcaaaaatcttgaagagtttattgcttgtcatacaatttttcattgttgttatttgcaaattaagtttgatctgtgtttagctaaatcaaagcatgatcaattctattagtgtaacaattatcctgttatataatatgtattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="-" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="31085" stop="29874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30785" g_stop="30173" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="-" ref_id="SGN-E211797" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30785" e_stop="30173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAACTACTTCACTTACAGTAAGGACTTACCCACCCCGTTGTGTGCTAAATGCAAACACAAATCCCCCTACCAAACAGGCAGCGGTGGCTCTCCGGGGGCGGAGGCAGTTGATCTCTCTGGTGACGGCGACAACGGTAGTGAAAGCGCTGGAGATGCCGTCCAAGGCTGCGGACATTGGCCTCTTTGGACTGAGAAAGAAGCTTAAGAAAGTAGAAGATGAGGCAGAAGAATTAGTGAAGGAGGGATTCGAGGCGGCAGACAAGGGAATTGCAGCGGCAGAGAAGGGAATTGAAGCGGCGGAGAAAGGATTACTGACGGCTGAGAAGGGGATTGAAGCAGCGGAGGAGAAGATCGAGAGTACAGTAAGTTTCGGTGGGTTGGCGCAAGCTGGAGCGGTGGCCGGAGCTGAATTTGTCGGAGTTTTGATTGCCGGAGCTGTAGTCAATGGTATTTTAGGACCTGAACCTCAAAAATCTTGAAGAGTTTATTGCTTGTCATACAATTTTTCATTGTTGTTATTTGCAAATTAAGTTTGATCTGTGTTTAGCTAAATTCAAAGCATGATCAATTCTATTAGTGTAACAATTAATCCTGTTATATAATATGTATTG</genome_strand>
        <mrna_strand>CACAACTACTTCACTTACAGTAAGGACTTACCCACCCCGTTGTGTGCTAAATGCAAACACAAATCCCCCTACCAAACAGGCAGCGGTGGCTCTCCGGGGGCGGAGGCAGTTGATCTCTCTGGTGACGGCGACAACGGTAGTGAAAGCGCTGGAGATGCCGTCCAAGGCTGCGGACATTGGCCTCTTTGGACTGAGAAAGAAGCTTAAGAAAGTAGAAGATGAGGCAGAAGAATTAGTGAAGGAGGGATTCGAGGCGGCAGACAAGGGAATTGCAGCGGCAGAGAAGGGAATTGAAGCGGCGGAGAAAGGATTACTGACGGCTGAGAAGGGGATTGAAGCAGCGGAGGAGAAGATCGAGAGTACAGTAAGTTTCGGTGGGTTGGCGCAAGCTGGAGCGGTGGCCGGAGCTGAATTTGTCGGAGTTTTGATTGCCGGAGCTGTAGTCAATGGTATTTTAGGACCTGAACCTCAAAAATCTTGAAGAGTTTATTGCTTGTCATACAATTTTTCATTGTTGTTATTTGCAAATTAAGTTTGATCTGTGTTTAGCTAAA-TCAAAGCATGATCAATTCTATTAGTGTAACAATT-ATCCTGTTATATAATATGTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E295579" ref_strand="+" ref_description="SGN-E295579 	[cLET-23-F12]">
      <seq>gatcccccgggctgcaggcttcacttacagtaaggacttacccaccccgttgtgtgctaaatgcaaacacaagtccccctaccaaacaggcagcggtggctctccgggggcggaggcagttgatctctctggtgacggcgacaacggtagtgaaagcgctggagatgccgtccaaggctgcggacattggcctctttggactgagaaagaagcttaagaaagtagaagatgaggcagaagaattagtgaaggagggattcgaggcggcagacaagggaattgcagcggcagagaagggaattgaagcggcggagaaaggattactgacggctgagaaggggattgaagcagcggaggagaagatcgagagtacagtaagtttcggtgggttggcgcaagctggagcggtggccggagctgaatttgtcggagttttgattgccggagctgtagtcaatggtattttaggacctgaacctcaaaaatcttgaagagtttattgcttgtcatacaatttttcattgttggtatttgcaaattaagtttgatctgtgttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="-" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="31077" stop="29938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30776" g_stop="30238" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="558" r_length="539" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="-" ref_id="SGN-E295579" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30776" e_stop="30238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTTACAGTAAGGACTTACCCACCCCGTTGTGTGCTAAATGCAAACACAAATCCCCCTACCAAACAGGCAGCGGTGGCTCTCCGGGGGCGGAGGCAGTTGATCTCTCTGGTGACGGCGACAACGGTAGTGAAAGCGCTGGAGATGCCGTCCAAGGCTGCGGACATTGGCCTCTTTGGACTGAGAAAGAAGCTTAAGAAAGTAGAAGATGAGGCAGAAGAATTAGTGAAGGAGGGATTCGAGGCGGCAGACAAGGGAATTGCAGCGGCAGAGAAGGGAATTGAAGCGGCGGAGAAAGGATTACTGACGGCTGAGAAGGGGATTGAAGCAGCGGAGGAGAAGATCGAGAGTACAGTAAGTTTCGGTGGGTTGGCGCAAGCTGGAGCGGTGGCCGGAGCTGAATTTGTCGGAGTTTTGATTGCCGGAGCTGTAGTCAATGGTATTTTAGGACCTGAACCTCAAAAATCTTGAAGAGTTTATTGCTTGTCATACAATTTTTCATTGTTGTTATTTGCAAATTAAGTTTGATCTGTGTTTA</genome_strand>
        <mrna_strand>TTCACTTACAGTAAGGACTTACCCACCCCGTTGTGTGCTAAATGCAAACACAAGTCCCCCTACCAAACAGGCAGCGGTGGCTCTCCGGGGGCGGAGGCAGTTGATCTCTCTGGTGACGGCGACAACGGTAGTGAAAGCGCTGGAGATGCCGTCCAAGGCTGCGGACATTGGCCTCTTTGGACTGAGAAAGAAGCTTAAGAAAGTAGAAGATGAGGCAGAAGAATTAGTGAAGGAGGGATTCGAGGCGGCAGACAAGGGAATTGCAGCGGCAGAGAAGGGAATTGAAGCGGCGGAGAAAGGATTACTGACGGCTGAGAAGGGGATTGAAGCAGCGGAGGAGAAGATCGAGAGTACAGTAAGTTTCGGTGGGTTGGCGCAAGCTGGAGCGGTGGCCGGAGCTGAATTTGTCGGAGTTTTGATTGCCGGAGCTGTAGTCAATGGTATTTTAGGACCTGAACCTCAAAAATCTTGAAGAGTTTATTGCTTGTCATACAATTTTTCATTGTTGGTATTTGCAAATTAAGTTTGATCTGTGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E295091" ref_strand="+" ref_description="SGN-E295091 	[cLET-40-M5]">
      <seq>cagacttcattttgattgtacagagagcatagccatgtcttccacaactacttcacttacagtaaggacttacccaccccgttgtgtgctaaatgcaaacacaaatccccctaccaaacaggcagcggtggctctccgggggcggaggcagttgatctctctggtgacggcgacaacggtagtgaaagcgctggagatgccgtccaaagctgcggacattggcctctttggactgagaaagaagcttaagaaagtagaagatgaggcagaagaattagtgaaggagggattcgaggcggcagacaagggaattgcagcggcagagaagggaattgaagcggcggagaaaggattactgacggctgagaaggggattgaagcagcggaggagaagatcgagagtacagtaagtttcggtgggttggcgcaagctggagcggtggccggagctgaatttgtcggagttttgattgccggagctgtagtcaatggtattttaagacctgaacctcaaaaatcttgaagagtttattgcttgtcatacaatttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="-" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="31127" stop="29976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30827" g_stop="30276" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="-" ref_id="SGN-E295091" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30827" e_stop="30276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACTTCATTTTGATTGTACAGAGAGCATAGCCATGTCTTCCACAACTACTTCACTTACAGTAAGGACTTACCCACCCCGTTGTGTGCTAAATGCAAACACAAATCCCCCTACCAAACAGGCAGCGGTGGCTCTCCGGGGGCGGAGGCAGTTGATCTCTCTGGTGACGGCGACAACGGTAGTGAAAGCGCTGGAGATGCCGTCCAAGGCTGCGGACATTGGCCTCTTTGGACTGAGAAAGAAGCTTAAGAAAGTAGAAGATGAGGCAGAAGAATTAGTGAAGGAGGGATTCGAGGCGGCAGACAAGGGAATTGCAGCGGCAGAGAAGGGAATTGAAGCGGCGGAGAAAGGATTACTGACGGCTGAGAAGGGGATTGAAGCAGCGGAGGAGAAGATCGAGAGTACAGTAAGTTTCGGTGGGTTGGCGCAAGCTGGAGCGGTGGCCGGAGCTGAATTTGTCGGAGTTTTGATTGCCGGAGCTGTAGTCAATGGTATTTTAGGACCTGAACCTCAAAAATCTTGAAGAGTTTATTGCTTGTCATACAATTTTTC</genome_strand>
        <mrna_strand>CAGACTTCATTTTGATTGTACAGAGAGCATAGCCATGTCTTCCACAACTACTTCACTTACAGTAAGGACTTACCCACCCCGTTGTGTGCTAAATGCAAACACAAATCCCCCTACCAAACAGGCAGCGGTGGCTCTCCGGGGGCGGAGGCAGTTGATCTCTCTGGTGACGGCGACAACGGTAGTGAAAGCGCTGGAGATGCCGTCCAAAGCTGCGGACATTGGCCTCTTTGGACTGAGAAAGAAGCTTAAGAAAGTAGAAGATGAGGCAGAAGAATTAGTGAAGGAGGGATTCGAGGCGGCAGACAAGGGAATTGCAGCGGCAGAGAAGGGAATTGAAGCGGCGGAGAAAGGATTACTGACGGCTGAGAAGGGGATTGAAGCAGCGGAGGAGAAGATCGAGAGTACAGTAAGTTTCGGTGGGTTGGCGCAAGCTGGAGCGGTGGCCGGAGCTGAATTTGTCGGAGTTTTGATTGCCGGAGCTGTAGTCAATGGTATTTTAAGACCTGAACCTCAAAAATCTTGAAGAGTTTATTGCTTGTCATACAATTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E291905" ref_strand="+" ref_description="SGN-E291905 	[cLET-7-P2]">
      <seq>tttgtgattgtggtgtcaaggagtgcagacttcattttgattgtacagagagcatagccatgtcttccacaactacttcacttacagtaaggacttacccaccccgttgtgtgctaaatgcaaacacaaatccccctaccaaacaggcagcggtggctctccgggggcggaggcagttgatctctctggtgacggcgacaacggtagtgaaagcgctggagatgccgtccaaggctgcggacattggcctctttggactgagaaagaagcttaagaaagtagaagatgaggcagaagaattagtgaaggagggattcgaggcggcagacaagggaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="-" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="31152" stop="30213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30852" g_stop="30513" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="-" ref_id="SGN-E291905" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30852" e_stop="30513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGATTGTGGTGTCAAGGAGTGCAGACTTCATTTTGATTGTACAGAGAGCATAGCCATGTCTTCCACAACTACTTCACTTACAGTAAGGACTTACCCACCCCGTTGTGTGCTAAATGCAAACACAAATCCCCCTACCAAACAGGCAGCGGTGGCTCTCCGGGGGCGGAGGCAGTTGATCTCTCTGGTGACGGCGACAACGGTAGTGAAAGCGCTGGAGATGCCGTCCAAGGCTGCGGACATTGGCCTCTTTGGACTGAGAAAGAAGCTTAAGAAAGTAGAAGATGAGGCAGAAGAATTAGTGAAGGAGGGATTCGAGGCGGCAGACAAGGGAATTGC</genome_strand>
        <mrna_strand>TTTGTGATTGTGGTGTCAAGGAGTGCAGACTTCATTTTGATTGTACAGAGAGCATAGCCATGTCTTCCACAACTACTTCACTTACAGTAAGGACTTACCCACCCCGTTGTGTGCTAAATGCAAACACAAATCCCCCTACCAAACAGGCAGCGGTGGCTCTCCGGGGGCGGAGGCAGTTGATCTCTCTGGTGACGGCGACAACGGTAGTGAAAGCGCTGGAGATGCCGTCCAAGGCTGCGGACATTGGCCTCTTTGGACTGAGAAAGAAGCTTAAGAAAGTAGAAGATGAGGCAGAAGAATTAGTGAAGGAGGGATTCGAGGCGGCAGACAAGGGAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E316817" ref_strand="+" ref_description="SGN-E316817 	[cTOB-6-I21]">
      <seq>agagaaagagagggaaaatcaagggcttataaaatttccgcttagagtagctatttctaatcaaagagacgatggctgaggaagcagtaatttcagtaacaagccctacggcggagcaaaaccagaactcggtgaacgccaccatcgaatctggtgttcagggaggcacagaatcaacttgcaacaacaataataataatgcggagagttctgcggttacttctgatgttaaccgtgaaaaatctctggagtacgcggatgagttagtggtaaaaggctccaaggcatctgaagatggagattatggagaagccgtagaatgctttagccgtgccctggaaattcgggtcgcacattttggtgaacttgctcctgaatgtatcaatgcatattataaatatgggtgtgctttgctgtacaaagctcaggatgaggctgatcctttggtttctttgccaaaaaaggacagcgggtctcaacaagattctaatagagacggctctgttaaaagtgttgttagttgtgagtcttctatttcaagcactgctgaacctggtggaagttcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="32911" stop="34950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33207" g_stop="33552" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33553" i_stop="34428" i_length="876">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34429" g_stop="34650" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="568" r_length="222" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E316817" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33207" e_stop="33552"/>
          <exon e_start="34429" e_stop="34650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAAAGAGAGGGAAAATCAAGGGCTTATAAAATTTCCGCTTAGAGTAGCTATTTCTAATCAAAGAGACGATGGCTGAGGAAGCAGTAATTTCAGTAACAAGCCCTACGGCGGAGCAAAACCAGAACTCGGTGAACGCCACCATCGAATCTGGTGTTCAGGGAGGCACAGAATCAACTTGCAACAACAATAATAATAATGCGGAGAGTTCTGCGGTTACTTCTGATGTTAACCGTGAAAAATCTCTGGAGTACGCGGATGAGTTAGTGGTAAAAGGCTCCAAGGCATCTGAAGATGGAGATTATGGAGAAGCCGTAGAATGCTTTAGCCGTGCCCTGGAAATTCGGTTAGGGTTTACCAGTTTCATTTCCGCACCTTTCTTTTTAATATCAAGGAAATTTAACTGTTTGCTTGTTTTATTTTGTTTGAAACTGTTTGATTAGTTTCTTTCGAGTTAATTGTTGTTGATGGAAATGTAAAAAAAAAAAAAAAAGATCTTTAGGCGTCTTTGGTAATAAGGCGGTAAAGATATTACGGTTCCGGGTTTAATTTACTCCGGGTGGTTGAGTGGTTCATCTTTCAAGCGATTTTGGAATTTTTTTGTGGTTTAGTTTTGATGTGCAGAATATCTCGTTAACATGGCACTAATACATAGATACAGTACAGACTCTTTTGAGTGATTATCAGATAATTAATTTCTTCATACATTTACTTTACTTGCTTATGAAGCTGCACTGCGCAAAAACGGGAAAAAGTACTTTTTTTTTGTGTGCTGTTCAAATCCTTTCCATTTGGGAATGATTGAGTTGCAGACATGAAGTATAGGGTTGAGATTTACAAGCCCTCGTGGACTCTTGGCTTTTGCTGGTGCGATCTTCTATAGCTAAAGACAGCATGGACATCTGTTTCCAAGCTTTTTAGTGGACCGATTGAAATTGGAATTACTATCCATGTCTCTGCACATTATGCACCTTCATTTCTTTCTTCTGTTACAATTGCAATGCTGTTGGTTTACTTGTATTTAACTTTCATTGTTACATGAATGCGTGGGTAGAAAGGAAATATTTCAAGAGTTCTTCAAGTTGTTTCTAGGGCATTGTTGTTCTTTGCGTCATACAATATGCATAGTTTTAGAGTTTTTCTCTCCCTATATATTAACTTTATTATTATGCCATTTCTAGTAATTCTCGTTTCACATGGATTTCTTTTGAAAAAAATTCAGGGTCGCACATTTTGGTGAACTTGCTCCTGAATGTATCAATGCATATTATAAATATGGGTGTGCTTTGCTGTACAAAGCTCAGGATGAGGCTGATCCTTTGGTTTCTTTGCCAAAAAAGGACAGCGGGTCTCAACAAGATTCTAATAGAGACGGCTCTGTTAAAAGTGTTGTTAGTTGTGAGTCTTCTATTTCAAGCACTGCTGAACCTGGTGGAAGTTCGAA</genome_strand>
        <mrna_strand>AGAGAAAGAGAGGGAAAATCAAGGGCTTATAAAATTTCCGCTTAGAGTAGCTATTTCTAATCAAAGAGACGATGGCTGAGGAAGCAGTAATTTCAGTAACAAGCCCTACGGCGGAGCAAAACCAGAACTCGGTGAACGCCACCATCGAATCTGGTGTTCAGGGAGGCACAGAATCAACTTGCAACAACAATAATAATAATGCGGAGAGTTCTGCGGTTACTTCTGATGTTAACCGTGAAAAATCTCTGGAGTACGCGGATGAGTTAGTGGTAAAAGGCTCCAAGGCATCTGAAGATGGAGATTATGGAGAAGCCGTAGAATGCTTTAGCCGTGCCCTGGAAATTCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCGCACATTTTGGTGAACTTGCTCCTGAATGTATCAATGCATATTATAAATATGGGTGTGCTTTGCTGTACAAAGCTCAGGATGAGGCTGATCCTTTGGTTTCTTTGCCAAAAAAGGACAGCGGGTCTCAACAAGATTCTAATAGAGACGGCTCTGTTAAAAGTGTTGTTAGTTGTGAGTCTTCTATTTCAAGCACTGCTGAACCTGGTGGAAGTTCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E542205" ref_strand="+" ref_description="SGN-E542205 	[TUS-63-G7]">
      <seq>ggaaaatcaagggcttataaaatttccgcttagagtagctatttctaatcaaagagacgatggctgaggaagcagtaatttcagtaacaagccctacggcggagcaaaaccagaactcggtgaacgccaccatcgaatctggtgttcagggaggcacagaatcaacttgcaacaacaataataataatgcggagagttctgcggttacttctgatgttaaccgtgaaaaatctctggagtacgcggatgagttagtggtaaaaggctccaaggcatctgaagatggagattatggagaagccgtagaatgctttagccgtgccctggaaattcgggtcgcacattttggtgaacttgctcctgaatgtatcaatgcatattataaatatgggtgtgctttgctgtacaaagctcaggatgaggctgatcctttggtttctttgccaaaaaaggacagcgggtctcaacaagattctaatagagacggctctgttaaaagtgttgttagttgtgagtcttctatttcaagcactgctgaacctggtggaagttcgaatggaaaggaaaaagtagaagatgatgaggaaaacgaagatgaaggagatgaagaagaaagtgatgacgaggacttggctgaaggtgatgaggatgaaactgacctgnatttagcctggaaactgttagatgttgcaagggcaattgctgaaaagcacgctggtgacacaatggaaaagtggatgtattatcagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="32919" stop="36757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33219" g_stop="33552" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33553" i_stop="34428" i_length="876">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34429" g_stop="34676" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="582" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34677" i_stop="36286" i_length="1610">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.245" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36287" g_stop="36457" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="752" r_length="170" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E542205" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33219" e_stop="33552"/>
          <exon e_start="34429" e_stop="34676"/>
          <exon e_start="36287" e_stop="36457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAATCAAGGGCTTATAAAATTTCCGCTTAGAGTAGCTATTTCTAATCAAAGAGACGATGGCTGAGGAAGCAGTAATTTCAGTAACAAGCCCTACGGCGGAGCAAAACCAGAACTCGGTGAACGCCACCATCGAATCTGGTGTTCAGGGAGGCACAGAATCAACTTGCAACAACAATAATAATAATGCGGAGAGTTCTGCGGTTACTTCTGATGTTAACCGTGAAAAATCTCTGGAGTACGCGGATGAGTTAGTGGTAAAAGGCTCCAAGGCATCTGAAGATGGAGATTATGGAGAAGCCGTAGAATGCTTTAGCCGTGCCCTGGAAATTCGGTTAGGGTTTACCAGTTTCATTTCCGCACCTTTCTTTTTAATATCAAGGAAATTTAACTGTTTGCTTGTTTTATTTTGTTTGAAACTGTTTGATTAGTTTCTTTCGAGTTAATTGTTGTTGATGGAAATGTAAAAAAAAAAAAAAAAGATCTTTAGGCGTCTTTGGTAATAAGGCGGTAAAGATATTACGGTTCCGGGTTTAATTTACTCCGGGTGGTTGAGTGGTTCATCTTTCAAGCGATTTTGGAATTTTTTTGTGGTTTAGTTTTGATGTGCAGAATATCTCGTTAACATGGCACTAATACATAGATACAGTACAGACTCTTTTGAGTGATTATCAGATAATTAATTTCTTCATACATTTACTTTACTTGCTTATGAAGCTGCACTGCGCAAAAACGGGAAAAAGTACTTTTTTTTTGTGTGCTGTTCAAATCCTTTCCATTTGGGAATGATTGAGTTGCAGACATGAAGTATAGGGTTGAGATTTACAAGCCCTCGTGGACTCTTGGCTTTTGCTGGTGCGATCTTCTATAGCTAAAGACAGCATGGACATCTGTTTCCAAGCTTTTTAGTGGACCGATTGAAATTGGAATTACTATCCATGTCTCTGCACATTATGCACCTTCATTTCTTTCTTCTGTTACAATTGCAATGCTGTTGGTTTACTTGTATTTAACTTTCATTGTTACATGAATGCGTGGGTAGAAAGGAAATATTTCAAGAGTTCTTCAAGTTGTTTCTAGGGCATTGTTGTTCTTTGCGTCATACAATATGCATAGTTTTAGAGTTTTTCTCTCCCTATATATTAACTTTATTATTATGCCATTTCTAGTAATTCTCGTTTCACATGGATTTCTTTTGAAAAAAATTCAGGGTCGCACATTTTGGTGAACTTGCTCCTGAATGTATCAATGCATATTATAAATATGGGTGTGCTTTGCTGTACAAAGCTCAGGATGAGGCTGATCCTTTGGTTTCTTTGCCAAAAAAGGACAGCGGGTCTCAACAAGATTCTAATAGAGACGGCTCTGTTAAAAGTGTTGTTAGTTGTGAGTCTTCTATTTCAAGCACTGCTGAACCTGGTGGAAGTTCGAATGGAAAGGAAAAAGTAGAAGATGATGGTTAGATTCCTTTGCATTATATTCTCATTTGATTTTCAACAACATTACTCGTGCTTTCTATTAGTGACATTATCTCAAAACATAATAACTGAATTGAAGAGTTTGCTAAGTAGTTACCAAAATTAGCATCGACGCAAAATGTGTCATAAAAATATATTTAGCAACATAGTAATGTGAAGCAAGGACTTTATCACCTCATGGTGAATCGATTAGCTTCTTCAAAGACCATCACTTTAGAAGTGAGGAACAGAGTAATCACAAAAAAATGGCTTGGCCTAGTGGGATTACTGATCCAGATAGAAGGTAAAGAAAACTTCATCACTTCATGGGTCTTAATGAGCTTCTTCAAAGACCATCACTTTAGAAGTGAGGAATATAGTGTCACAAAAAATGTTTATCACTTCTTGGGTGAACATTGAGCTTCTCCGAAGTCCATCACTTTAAAAGCCAGGAACAAAGTGATTAAAAAAAGTGAATTTCTCAGAGGTATAGCTATTCTAGTAGCAACCCTTGTGAAATTAGTCGAGGTGTGCACAATCTGGCCTGTACATCATGGTTATAGAACAAAAAAGAGTGAGCAATTGATCCAGCAAAAACAATTCATTTTGAACTTCACTTTAAAGGTTATGTAGGAGAGAGAGAGAGAGAGAGAGAGTTTCCTGCCATTTTAGTGCGATTACTCCTTCCCATCAGCATTTGACATTCTCTTTATCCGTTGTCTACTTCATTTATTGAGTTTGTAAAATCTCACCTTTTACTGCTTCCAGTTCCCTGTTTCTTTCGATTCTTCATTTTTTCAAACAATGACTTTTCTTTCTCTATCTGGTATATGAGTTCTATTCTTCTACAACTTCTCATTTTGAGCTTCTCTCTTTTTCTCTCTTAATACATTTTAGAGTAACTAATTATGGAATTGCATGTTGCAAATTAATTCTTTTTTTCCTCAAAATTATATAGTTGTGGAAGTTAGAAATCAATTATGCATCCAAAATCATGTGTCTGTGACCTTGTTGACATAATATTTTAAAGATGTTCAATTTTAGTTTGTGTCAATTGTACACTGGACATTGAAACTAGTGGCTTTAATGGCACTGCAATGTTATAAGAACTAAATTCATATATCCTTGTAAAGAAGTTCTAGATTCATATATGTTTGGTAATATTTATATTTTCTGTAAATGTGCACTTCATTCCTAAGAGACAGGCTCTTAGCTTCTCATTTTTGGTTTGAATGACCATGGTTCTTTTTCTTACTGCACATCTTTCTATAAAGACACAGTCTGTTACAATTTTATATTTTTGGGGGGTGGGGGATGCGGAGAGGAAATTTAGTGTACCCAGTTGATTCACATAAATATATGAGTTGCTATAGAGTCATGTGCAATCGCCTACAATATATGTCAGTTTTAGTTAAATACTGATTACTGCTCCGTCCTTTATAAAGAAGTTTCTGGAAAGATATATTATAGAAATGTAAAGATGTGCTGCTGCTGTTTTCCTGCTAATAGAAATCAGCTACGTGCAACTATTTTGTCACTAATTGAGATCAGTTATCCTCTTTAGATATGATAGTTCTTGTTGTGGCTTACACTGTTATGAGACAGCTGCAGAGGAAAACGAAGATGAAGGAGATGAAGAAGAAAGTGATGACGAGGACTTGGCTGAAGGTGATGAGGATGAAACTGACCTGGATTTAGCCTGGAAACTGTTAGATGTTGCAAGGGCAATTGCTGAAAAGCACGCTGGTGACACAATGGAAAAAGTGGATGTATTATCAGCTT</genome_strand>
        <mrna_strand>GGAAAATCAAGGGCTTATAAAATTTCCGCTTAGAGTAGCTATTTCTAATCAAAGAGACGATGGCTGAGGAAGCAGTAATTTCAGTAACAAGCCCTACGGCGGAGCAAAACCAGAACTCGGTGAACGCCACCATCGAATCTGGTGTTCAGGGAGGCACAGAATCAACTTGCAACAACAATAATAATAATGCGGAGAGTTCTGCGGTTACTTCTGATGTTAACCGTGAAAAATCTCTGGAGTACGCGGATGAGTTAGTGGTAAAAGGCTCCAAGGCATCTGAAGATGGAGATTATGGAGAAGCCGTAGAATGCTTTAGCCGTGCCCTGGAAATTCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCGCACATTTTGGTGAACTTGCTCCTGAATGTATCAATGCATATTATAAATATGGGTGTGCTTTGCTGTACAAAGCTCAGGATGAGGCTGATCCTTTGGTTTCTTTGCCAAAAAAGGACAGCGGGTCTCAACAAGATTCTAATAGAGACGGCTCTGTTAAAAGTGTTGTTAGTTGTGAGTCTTCTATTTCAAGCACTGCTGAACCTGGTGGAAGTTCGAATGGAAAGGAAAAAGTAGAAGATGATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAAAACGAAGATGAAGGAGATGAAGAAGAAAGTGATGACGAGGACTTGGCTGAAGGTGATGAGGATGAAACTGACCTGNATTTAGCCTGGAAACTGTTAGATGTTGCAAGGGCAATTGCTGAAAAGCACGCTGGTGACACAATGG-AAAAGTGGATGTATTATCAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E298043" ref_strand="+" ref_description="SGN-E298043 	[cLEW-12-C22]">
      <seq>gaaaatcaagggcttataaaatttccgcttagagtagctatttctaatcaaagagacgatggctgaggaagcagtaatttcagtaacaagccctacggcggagcaaaaccagaactcggtgaacgccaccatcgaatctggtgttcagggaggcacagaatcaacttgcaacaacaataataataatgcggagagttctgcggttacttctgatgttaaccgcgaaaaatctctggagtacgcggatgagttagtggtaaaaggctccaaggcatctgaagatggagattatggagaagccgtagaatgctttagccgtgccctggaaattcgggtcgcacattttggtgaacttgctcctgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="32920" stop="34760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33220" g_stop="33552" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33553" i_stop="34428" i_length="876">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34429" g_stop="34460" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="365" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E298043" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33220" e_stop="33552"/>
          <exon e_start="34429" e_stop="34460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCAAGGGCTTATAAAATTTCCGCTTAGAGTAGCTATTTCTAATCAAAGAGACGATGGCTGAGGAAGCAGTAATTTCAGTAACAAGCCCTACGGCGGAGCAAAACCAGAACTCGGTGAACGCCACCATCGAATCTGGTGTTCAGGGAGGCACAGAATCAACTTGCAACAACAATAATAATAATGCGGAGAGTTCTGCGGTTACTTCTGATGTTAACCGTGAAAAATCTCTGGAGTACGCGGATGAGTTAGTGGTAAAAGGCTCCAAGGCATCTGAAGATGGAGATTATGGAGAAGCCGTAGAATGCTTTAGCCGTGCCCTGGAAATTCGGTTAGGGTTTACCAGTTTCATTTCCGCACCTTTCTTTTTAATATCAAGGAAATTTAACTGTTTGCTTGTTTTATTTTGTTTGAAACTGTTTGATTAGTTTCTTTCGAGTTAATTGTTGTTGATGGAAATGTAAAAAAAAAAAAAAAAGATCTTTAGGCGTCTTTGGTAATAAGGCGGTAAAGATATTACGGTTCCGGGTTTAATTTACTCCGGGTGGTTGAGTGGTTCATCTTTCAAGCGATTTTGGAATTTTTTTGTGGTTTAGTTTTGATGTGCAGAATATCTCGTTAACATGGCACTAATACATAGATACAGTACAGACTCTTTTGAGTGATTATCAGATAATTAATTTCTTCATACATTTACTTTACTTGCTTATGAAGCTGCACTGCGCAAAAACGGGAAAAAGTACTTTTTTTTTGTGTGCTGTTCAAATCCTTTCCATTTGGGAATGATTGAGTTGCAGACATGAAGTATAGGGTTGAGATTTACAAGCCCTCGTGGACTCTTGGCTTTTGCTGGTGCGATCTTCTATAGCTAAAGACAGCATGGACATCTGTTTCCAAGCTTTTTAGTGGACCGATTGAAATTGGAATTACTATCCATGTCTCTGCACATTATGCACCTTCATTTCTTTCTTCTGTTACAATTGCAATGCTGTTGGTTTACTTGTATTTAACTTTCATTGTTACATGAATGCGTGGGTAGAAAGGAAATATTTCAAGAGTTCTTCAAGTTGTTTCTAGGGCATTGTTGTTCTTTGCGTCATACAATATGCATAGTTTTAGAGTTTTTCTCTCCCTATATATTAACTTTATTATTATGCCATTTCTAGTAATTCTCGTTTCACATGGATTTCTTTTGAAAAAAATTCAGGGTCGCACATTTTGGTGAACTTGCTCCTGAAT</genome_strand>
        <mrna_strand>GAAAATCAAGGGCTTATAAAATTTCCGCTTAGAGTAGCTATTTCTAATCAAAGAGACGATGGCTGAGGAAGCAGTAATTTCAGTAACAAGCCCTACGGCGGAGCAAAACCAGAACTCGGTGAACGCCACCATCGAATCTGGTGTTCAGGGAGGCACAGAATCAACTTGCAACAACAATAATAATAATGCGGAGAGTTCTGCGGTTACTTCTGATGTTAACCGCGAAAAATCTCTGGAGTACGCGGATGAGTTAGTGGTAAAAGGCTCCAAGGCATCTGAAGATGGAGATTATGGAGAAGCCGTAGAATGCTTTAGCCGTGCCCTGGAAATTCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCGCACATTTTGGTGAACTTGCTCCTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E205283" ref_strand="+" ref_description="SGN-E205283 	[cLEC-25-B14]">
      <seq>aagggcttataaaatttccgcttagagtagctatttctaatcaaagagacgatggctgaggaagcagtaatttcagtaacaagccctacggcggagcaaaaccagaactcggtgaacgccaccatcgaatctggtgttcagggaggcacaaaatcaacttgcaacaacaataataataatgcggagagttctgcggttacttctgatgttaaccgtgaaaaatctctggagtacgcggatgagttagtggtaaaaggctccaaggcatctgaagatggagattatggagaagccgtagaatgctttagccgtgccctggaaattcaggtcgcacattttggtgaacttgctcctgaatgtatcaatgcatattataaatatgggtgtgctttctgtacaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="32927" stop="34807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33227" g_stop="33552" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33553" i_stop="34428" i_length="876">
            <donor d_prob="0.760" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34429" g_stop="34507" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="404" r_length="78" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E205283" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33227" e_stop="33552"/>
          <exon e_start="34429" e_stop="34507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGCTTATAAAATTTCCGCTTAGAGTAGCTATTTCTAATCAAAGAGACGATGGCTGAGGAAGCAGTAATTTCAGTAACAAGCCCTACGGCGGAGCAAAACCAGAACTCGGTGAACGCCACCATCGAATCTGGTGTTCAGGGAGGCACAGAATCAACTTGCAACAACAATAATAATAATGCGGAGAGTTCTGCGGTTACTTCTGATGTTAACCGTGAAAAATCTCTGGAGTACGCGGATGAGTTAGTGGTAAAAGGCTCCAAGGCATCTGAAGATGGAGATTATGGAGAAGCCGTAGAATGCTTTAGCCGTGCCCTGGAAATTCGGTTAGGGTTTACCAGTTTCATTTCCGCACCTTTCTTTTTAATATCAAGGAAATTTAACTGTTTGCTTGTTTTATTTTGTTTGAAACTGTTTGATTAGTTTCTTTCGAGTTAATTGTTGTTGATGGAAATGTAAAAAAAAAAAAAAAAGATCTTTAGGCGTCTTTGGTAATAAGGCGGTAAAGATATTACGGTTCCGGGTTTAATTTACTCCGGGTGGTTGAGTGGTTCATCTTTCAAGCGATTTTGGAATTTTTTTGTGGTTTAGTTTTGATGTGCAGAATATCTCGTTAACATGGCACTAATACATAGATACAGTACAGACTCTTTTGAGTGATTATCAGATAATTAATTTCTTCATACATTTACTTTACTTGCTTATGAAGCTGCACTGCGCAAAAACGGGAAAAAGTACTTTTTTTTTGTGTGCTGTTCAAATCCTTTCCATTTGGGAATGATTGAGTTGCAGACATGAAGTATAGGGTTGAGATTTACAAGCCCTCGTGGACTCTTGGCTTTTGCTGGTGCGATCTTCTATAGCTAAAGACAGCATGGACATCTGTTTCCAAGCTTTTTAGTGGACCGATTGAAATTGGAATTACTATCCATGTCTCTGCACATTATGCACCTTCATTTCTTTCTTCTGTTACAATTGCAATGCTGTTGGTTTACTTGTATTTAACTTTCATTGTTACATGAATGCGTGGGTAGAAAGGAAATATTTCAAGAGTTCTTCAAGTTGTTTCTAGGGCATTGTTGTTCTTTGCGTCATACAATATGCATAGTTTTAGAGTTTTTCTCTCCCTATATATTAACTTTATTATTATGCCATTTCTAGTAATTCTCGTTTCACATGGATTTCTTTTGAAAAAAATTCAGGGTCGCACATTTTGGTGAACTTGCTCCTGAATGTATCAATGCATATTATAAATATGGGTGTGCTTTGCTGTACAAAGCT</genome_strand>
        <mrna_strand>AAGGGCTTATAAAATTTCCGCTTAGAGTAGCTATTTCTAATCAAAGAGACGATGGCTGAGGAAGCAGTAATTTCAGTAACAAGCCCTACGGCGGAGCAAAACCAGAACTCGGTGAACGCCACCATCGAATCTGGTGTTCAGGGAGGCACAAAATCAACTTGCAACAACAATAATAATAATGCGGAGAGTTCTGCGGTTACTTCTGATGTTAACCGTGAAAAATCTCTGGAGTACGCGGATGAGTTAGTGGTAAAAGGCTCCAAGGCATCTGAAGATGGAGATTATGGAGAAGCCGTAGAATGCTTTAGCCGTGCCCTGGAAATTCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCGCACATTTTGGTGAACTTGCTCCTGAATGTATCAATGCATATTATAAATATGGGTGTGCTTT-CTGTACAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E300343" ref_strand="+" ref_description="SGN-E300343 	[cLEW-17-H21]">
      <seq>atcaacttgcaacaacaataataataatgcggagagttctgcggttacttctgatgttaaccgtgaaaaatctctggagtacgcggatgagttagtggtaaaaggctccaaggcatctgaagatggagattatggagaagccgtagaatgctttagccgtgccctggaaattcgggtcgcacattttggtgaactcgctcctgaatgtatcaatgcatattataaatatgggtgtgctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="33079" stop="34795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33379" g_stop="33552" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33553" i_stop="34428" i_length="876">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34429" g_stop="34495" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="241" r_length="67" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E300343" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>241</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33379" e_stop="33552"/>
          <exon e_start="34429" e_stop="34495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAACTTGCAACAACAATAATAATAATGCGGAGAGTTCTGCGGTTACTTCTGATGTTAACCGTGAAAAATCTCTGGAGTACGCGGATGAGTTAGTGGTAAAAGGCTCCAAGGCATCTGAAGATGGAGATTATGGAGAAGCCGTAGAATGCTTTAGCCGTGCCCTGGAAATTCGGTTAGGGTTTACCAGTTTCATTTCCGCACCTTTCTTTTTAATATCAAGGAAATTTAACTGTTTGCTTGTTTTATTTTGTTTGAAACTGTTTGATTAGTTTCTTTCGAGTTAATTGTTGTTGATGGAAATGTAAAAAAAAAAAAAAAAGATCTTTAGGCGTCTTTGGTAATAAGGCGGTAAAGATATTACGGTTCCGGGTTTAATTTACTCCGGGTGGTTGAGTGGTTCATCTTTCAAGCGATTTTGGAATTTTTTTGTGGTTTAGTTTTGATGTGCAGAATATCTCGTTAACATGGCACTAATACATAGATACAGTACAGACTCTTTTGAGTGATTATCAGATAATTAATTTCTTCATACATTTACTTTACTTGCTTATGAAGCTGCACTGCGCAAAAACGGGAAAAAGTACTTTTTTTTTGTGTGCTGTTCAAATCCTTTCCATTTGGGAATGATTGAGTTGCAGACATGAAGTATAGGGTTGAGATTTACAAGCCCTCGTGGACTCTTGGCTTTTGCTGGTGCGATCTTCTATAGCTAAAGACAGCATGGACATCTGTTTCCAAGCTTTTTAGTGGACCGATTGAAATTGGAATTACTATCCATGTCTCTGCACATTATGCACCTTCATTTCTTTCTTCTGTTACAATTGCAATGCTGTTGGTTTACTTGTATTTAACTTTCATTGTTACATGAATGCGTGGGTAGAAAGGAAATATTTCAAGAGTTCTTCAAGTTGTTTCTAGGGCATTGTTGTTCTTTGCGTCATACAATATGCATAGTTTTAGAGTTTTTCTCTCCCTATATATTAACTTTATTATTATGCCATTTCTAGTAATTCTCGTTTCACATGGATTTCTTTTGAAAAAAATTCAGGGTCGCACATTTTGGTGAACTTGCTCCTGAATGTATCAATGCATATTATAAATATGGGTGTGCTTTG</genome_strand>
        <mrna_strand>ATCAACTTGCAACAACAATAATAATAATGCGGAGAGTTCTGCGGTTACTTCTGATGTTAACCGTGAAAAATCTCTGGAGTACGCGGATGAGTTAGTGGTAAAAGGCTCCAAGGCATCTGAAGATGGAGATTATGGAGAAGCCGTAGAATGCTTTAGCCGTGCCCTGGAAATTCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCGCACATTTTGGTGAACTCGCTCCTGAATGTATCAATGCATATTATAAATATGGGTGTGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E541367" ref_strand="+" ref_description="SGN-E541367 	[TUS-62-B23]">
      <seq>cagctttggctgaggtagccttggaaagagaggatattgaaacttcccttagtgattacctgaaggcattatccattttggaacgcttggttgaacctgacagtcgccatattgctgcgctcaactttaggatatgcttatgcctggaaattggttctaagcatcaggaagccataccatactgccaaaaagctattttaacttgcaagtcgcggctgcagagactcactgaggaaataaagcttttgtcagaatcaacagaaagattagctactaccgatgtagatcagattgcgagacagtcttccagtatatcacagtctgactctgtatctgctaaagaagctgaagttgaaacgctcactgaactttctgcagaattggagaagaagcttgaagatttgcagcagtgtatgtcaaatccatcatctatcctctccgatattttgggaatggtgtctgcgaaagcaagaagtctagagaatgctgatgcttctgtagctgtgaactcctcacagatgggtgttggtaccagtggtagcggaagttttgactctccaactgtttccactgcccacacaaatggtgcagctggaataacccatcttggagtagttggaagaggagtcaagagggtgcatctaaacacaaccacagaatctagtccagcgaaaaaacctgcatctgagcagccgtcagataatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="36152" stop="38998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36452" g_stop="36481" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36482" i_stop="37790" i_length="1309">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37791" g_stop="37881" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="121" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37882" i_stop="38033" i_length="152">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.835" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38034" g_stop="38304" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="392" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38305" i_stop="38384" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38385" g_stop="38698" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="706" r_length="314" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E541367" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36452" e_stop="36481"/>
          <exon e_start="37791" e_stop="37881"/>
          <exon e_start="38034" e_stop="38304"/>
          <exon e_start="38385" e_stop="38698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTTTGGCTGAGGTAGCCTTGGAAAGAGGTTTGTCTCCATTAAACAATACTTCCATTACCTCATTAGAATAGTGACGTCAGACACTTATTTTTTGTATGGGAAGTTGAAATGTCCATTGGTCTATCAACCACTTATTGTCTTGTTAACTAAAATATGTACTGTTAACCAGACTAATACGTAAATTGTCATCTCAATGAATAACTCAGTTGATTATATTCCAGCATTTTGGTTGTTTTGAATTGCAATCCCAAGCTGCAAATAGTTTCTCTAACTCAAAACTGTTCGAAACAATGGAAATAACTGTAGGAACTGGATAAAAGGATGACTGTTCAAAGTATTAAAAGGTGAGGTCTAACTAAAAAAATGCTAGGTAATTTCTGTCCACCCGTCTAAGTTTTGGTGACAGTTATCTAATATACTTGTGGTGGTGGGATGTAGCAAGTATCGGGTGAATTACTTGAGGCGCAAACATGTTGGCCCGGGACCTCTATTATCAAGAGAGTGAGATAGATAGAGACTGTTTGTGTTCTAAAAAATTTCTTATCTACATGTGCAAAACGAGGGGGTGTAATCAGACATATGAAACGGAGGTGAACTCTAGTTTTATCATCAGTGAGTTATAGATGTTGTGGAACATGCTGTGTTGAGAGGTGGACTGAGATCGAGGGAGTGACTGGTAGATTGAGGGGTGTAATCTGAGTACAGACATGAAATGGAGGTGAACTCTAGTTTTATCATCAGTGAGTTTTAGATGTTGTGGAACATGCTGTGTTGAGAGGTGGACTGAGATCGAGGAAGTGACTGATAGATTGAGAGGCATTGGAGGCAAATATTGGGGTGAGCAAGGATGGAGAAGTGATGTTAGTGACTTGACACACTGGTGGAACTTCAAGCCGCGACCGAGAGATAAGAGGGACACGATCTATGTTGCTTGTATCCTCCAAAATGCCACTGTACCCATGTTGGATCCTCTAATGGGAGGGCATATGGGTGTGATGACAATTTTAGAGGATCTGAGCAATATTACATGACTATGAGTTACGAAGCCCCTGTTCCTCCTATTAAAATCTAGCTCAACAATTTGCTAGCATTTTTAGTTGGAATCTTGTATTCACATTCTAGATTGTTATGCGCTGCTTTTTCAATGAATTCTTTTTGAAAATATTAGGTGACTGGAAATGGATTTAATAATTGAAATAAAAATGACCTAAACAAACTGATCAAACCAAATGCAAATGATTTGGACCTTTAGTTGCCTTTTTAGTAGAAACAAAATGTTTATTTCTCTTCTTCACATGCTATTAGATTTGTAAATGTTGTCCTTTTCCTTTTGCAGAGGATATTGAAACTTCCCTTAGTGATTACCTGAAGGCATTATCCATTTTGGAACGCTTGGTTGAACCTGACAGTCGCCATATTGCTGCGCTGTATCCTTAGTAACATGTAACTTATCTTTAAATTAAGGGGATTGTTTTCTGACCTACATCTAATTAGTTAAGTCTTTATAATGATTTCTTTAAGTGCCAACATTTAAGTGTTGCTTCCTCTTCCTTGCCTTGTGATCTTAACTGTATTACAGCAACTTTAGGATATGCTTATGCCTGGAAATTGGTTCTAAGCATCAGGAAGCCATACCATACTGCCAAAAAGCTATTTTAACTTGCAAGTCGCGGCTGCAGAGACTCACTGAGGAAATAAAGCTTTTGTCAGAATCAACAGAAAGATTAGCTACTACCGATGTAGATCAGATTGCGAGACAGTCTTCCAGTATATCACAGTCTGACTCTGTATCTGCTAAAGAAGCTGAAGTTGAAACGCTCACTGAACTTTCTGCAGAATTGGAGAAGAAGGCAAGTATCAATCACCAGATGAATCTTTAGTAATGTCTTAGTTCTTTCTTATTTTATAATTGTGACTCTTCCACTTGCAGCTTGAAGATTTGCAGCAGTGTATGTCAAATCCATCATCTATCCTCTCCGATATTTTGGGAATGGTGTCTGCGAAAGCAAGAAGTCTAGAGAATGCTGATGCTTCTGTAGCTGTGAACTCCTCACAGATGGGTGTTGGTACCAGTGGTAGCGGAAGTTTTGACTCTCCAACTGTTTCCACTGCCCACACAAATGGTGCAGCTGGAATAACCCATCTTGGAGTAGTTGGAAGAGGAGTCAAGAGGGTGCATCTAAACACAACCACAGAATCTAGTCCAGCGAAAAAACCTGCATCTGAGCAGCCGTCAGATAATGG</genome_strand>
        <mrna_strand>CAGCTTTGGCTGAGGTAGCCTTGGAAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATATTGAAACTTCCCTTAGTGATTACCTGAAGGCATTATCCATTTTGGAACGCTTGGTTGAACCTGACAGTCGCCATATTGCTGCGCT........................................................................................................................................................CAACTTTAGGATATGCTTATGCCTGGAAATTGGTTCTAAGCATCAGGAAGCCATACCATACTGCCAAAAAGCTATTTTAACTTGCAAGTCGCGGCTGCAGAGACTCACTGAGGAAATAAAGCTTTTGTCAGAATCAACAGAAAGATTAGCTACTACCGATGTAGATCAGATTGCGAGACAGTCTTCCAGTATATCACAGTCTGACTCTGTATCTGCTAAAGAAGCTGAAGTTGAAACGCTCACTGAACTTTCTGCAGAATTGGAGAAGAAG................................................................................CTTGAAGATTTGCAGCAGTGTATGTCAAATCCATCATCTATCCTCTCCGATATTTTGGGAATGGTGTCTGCGAAAGCAAGAAGTCTAGAGAATGCTGATGCTTCTGTAGCTGTGAACTCCTCACAGATGGGTGTTGGTACCAGTGGTAGCGGAAGTTTTGACTCTCCAACTGTTTCCACTGCCCACACAAATGGTGCAGCTGGAATAACCCATCTTGGAGTAGTTGGAAGAGGAGTCAAGAGGGTGCATCTAAACACAACCACAGAATCTAGTCCAGCGAAAAAACCTGCATCTGAGCAGCCGTCAGATAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E296016" ref_strand="+" ref_description="SGN-E296016 	[cLET-27-O20]">
      <seq>ctttggctgaggtagccttggaaagagaggatattgaaacttcccttagtgattacctgaaggcattatccattttggaacgcttggttgaacctgacagtcgccatattgctgcgctcaactttaggatatgcttatgcctggaaattggttctaagcatcaggaagccataccatactgccaaaaagctattttaacttgcaagtcgcggatgcagagactcactgaggaaataaagctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="36155" stop="38459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36455" g_stop="36481" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36482" i_stop="37790" i_length="1309">
            <donor d_prob="0.908" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37791" g_stop="37881" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="118" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37882" i_stop="38033" i_length="152">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.835" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38034" g_stop="38159" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="244" r_length="126" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E296016" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>244</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36455" e_stop="36481"/>
          <exon e_start="37791" e_stop="37881"/>
          <exon e_start="38034" e_stop="38159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGGCTGAGGTAGCCTTGGAAAGAGGTTTGTCTCCATTAAACAATACTTCCATTACCTCATTAGAATAGTGACGTCAGACACTTATTTTTTGTATGGGAAGTTGAAATGTCCATTGGTCTATCAACCACTTATTGTCTTGTTAACTAAAATATGTACTGTTAACCAGACTAATACGTAAATTGTCATCTCAATGAATAACTCAGTTGATTATATTCCAGCATTTTGGTTGTTTTGAATTGCAATCCCAAGCTGCAAATAGTTTCTCTAACTCAAAACTGTTCGAAACAATGGAAATAACTGTAGGAACTGGATAAAAGGATGACTGTTCAAAGTATTAAAAGGTGAGGTCTAACTAAAAAAATGCTAGGTAATTTCTGTCCACCCGTCTAAGTTTTGGTGACAGTTATCTAATATACTTGTGGTGGTGGGATGTAGCAAGTATCGGGTGAATTACTTGAGGCGCAAACATGTTGGCCCGGGACCTCTATTATCAAGAGAGTGAGATAGATAGAGACTGTTTGTGTTCTAAAAAATTTCTTATCTACATGTGCAAAACGAGGGGGTGTAATCAGACATATGAAACGGAGGTGAACTCTAGTTTTATCATCAGTGAGTTATAGATGTTGTGGAACATGCTGTGTTGAGAGGTGGACTGAGATCGAGGGAGTGACTGGTAGATTGAGGGGTGTAATCTGAGTACAGACATGAAATGGAGGTGAACTCTAGTTTTATCATCAGTGAGTTTTAGATGTTGTGGAACATGCTGTGTTGAGAGGTGGACTGAGATCGAGGAAGTGACTGATAGATTGAGAGGCATTGGAGGCAAATATTGGGGTGAGCAAGGATGGAGAAGTGATGTTAGTGACTTGACACACTGGTGGAACTTCAAGCCGCGACCGAGAGATAAGAGGGACACGATCTATGTTGCTTGTATCCTCCAAAATGCCACTGTACCCATGTTGGATCCTCTAATGGGAGGGCATATGGGTGTGATGACAATTTTAGAGGATCTGAGCAATATTACATGACTATGAGTTACGAAGCCCCTGTTCCTCCTATTAAAATCTAGCTCAACAATTTGCTAGCATTTTTAGTTGGAATCTTGTATTCACATTCTAGATTGTTATGCGCTGCTTTTTCAATGAATTCTTTTTGAAAATATTAGGTGACTGGAAATGGATTTAATAATTGAAATAAAAATGACCTAAACAAACTGATCAAACCAAATGCAAATGATTTGGACCTTTAGTTGCCTTTTTAGTAGAAACAAAATGTTTATTTCTCTTCTTCACATGCTATTAGATTTGTAAATGTTGTCCTTTTCCTTTTGCAGAGGATATTGAAACTTCCCTTAGTGATTACCTGAAGGCATTATCCATTTTGGAACGCTTGGTTGAACCTGACAGTCGCCATATTGCTGCGCTGTATCCTTAGTAACATGTAACTTATCTTTAAATTAAGGGGATTGTTTTCTGACCTACATCTAATTAGTTAAGTCTTTATAATGATTTCTTTAAGTGCCAACATTTAAGTGTTGCTTCCTCTTCCTTGCCTTGTGATCTTAACTGTATTACAGCAACTTTAGGATATGCTTATGCCTGGAAATTGGTTCTAAGCATCAGGAAGCCATACCATACTGCCAAAAAGCTATTTTAACTTGCAAGTCGCGGCTGCAGAGACTCACTGAGGAAATAAAGCTTTT</genome_strand>
        <mrna_strand>CTTTGGCTGAGGTAGCCTTGGAAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATATTGAAACTTCCCTTAGTGATTACCTGAAGGCATTATCCATTTTGGAACGCTTGGTTGAACCTGACAGTCGCCATATTGCTGCGCT........................................................................................................................................................CAACTTTAGGATATGCTTATGCCTGGAAATTGGTTCTAAGCATCAGGAAGCCATACCATACTGCCAAAAAGCTATTTTAACTTGCAAGTCGCGGATGCAGAGACTCACTGAGGAAATAAAGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E548675" ref_strand="-" ref_description="SGN-E548675 	[TUS-63-G7]">
      <seq>tatgcctggaaattgtttctaagcatcaggaagccataccatactgccaaaaagctattttaacttgcaagtcgcggctgcagagactcactgaggaaataaagcttttgtcagaatcaacagaaagattagctactaccgatgtagatcagattgcgagacagtcttccagtatatcacagtctgactctgtatctgctaaagaagctgaagttgaaacgctcactgaactttctgcagaattggagaagaagcttgaagatttgcagcagtgtatgtcaaatccatcatctatcctctccgatattttgggaatggtgtctgcgaaagcaagaagtctagagaatgctgatgcttctgtagctgtgaactcctcacagatgggtgttggtaccagtggtagcggaagttttgactctccaactgtttccactgcccacacaaatggtgcagctggaataacccatcttggagtagttggaagaggagtcaagagggtgcatctaaacacaaccacagaatctagtccagcgaaaaaacctgcatctgagcagccgtcagataatggagatggcactgcctcttaaagcatgtattgttggtgcttcaattaagttacggttaacatttcaatttagcttattgataacattggtggattaccttagtttgttgcattctctgttggttagctgggaagtgtgttgccacagatcgcatcagtttatttccttaaattaattaccttgtatgcatgttgactattcaaaaaaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="37751" stop="103012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38051" g_stop="38304" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38305" i_stop="38384" i_length="80">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38385" g_stop="38904" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="774" r_length="520" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38905" i_stop="39494" i_length="590">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="0.608" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39495" g_stop="39525" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="775" r_stop="805" r_length="31" r_score="0.516"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E548675" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548675" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="38051" e_stop="38304"/>
          <exon e_start="38385" e_stop="38904"/>
          <exon e_start="39495" e_stop="39525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGCCTGGAAATTGGTTCTAAGCATCAGGAAGCCATACCATACTGCCAAAAAGCTATTTTAACTTGCAAGTCGCGGCTGCAGAGACTCACTGAGGAAATAAAGCTTTTGTCAGAATCAACAGAAAGATTAGCTACTACCGATGTAGATCAGATTGCGAGACAGTCTTCCAGTATATCACAGTCTGACTCTGTATCTGCTAAAGAAGCTGAAGTTGAAACGCTCACTGAACTTTCTGCAGAATTGGAGAAGAAGGCAAGTATCAATCACCAGATGAATCTTTAGTAATGTCTTAGTTCTTTCTTATTTTATAATTGTGACTCTTCCACTTGCAGCTTGAAGATTTGCAGCAGTGTATGTCAAATCCATCATCTATCCTCTCCGATATTTTGGGAATGGTGTCTGCGAAAGCAAGAAGTCTAGAGAATGCTGATGCTTCTGTAGCTGTGAACTCCTCACAGATGGGTGTTGGTACCAGTGGTAGCGGAAGTTTTGACTCTCCAACTGTTTCCACTGCCCACACAAATGGTGCAGCTGGAATAACCCATCTTGGAGTAGTTGGAAGAGGAGTCAAGAGGGTGCATCTAAACACAACCACAGAATCTAGTCCAGCGAAAAAACCTGCATCTGAGCAGCCGTCAGATAATGGAGATGGCACTGCCTCTTAAAGCATGTATTGTTGGTGCTTCAATTAAGTTACGGTTAACATTTCAATTTAGCTTATTGATAACATTGGTGGATTACCTTAGTTTGTTGCATTCTCTGTTGGTTAGCTGGGAAGTGTGTTGCCACAGATCGCATCAGTTTATTTCCTTAAATTAATTACCTTGTATGCATGTTGACTATTCAGTATGTGTTGCTTTGCTTCTTCTGCAGTATGTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATCTACGTAAAGACTCAGAAGTTGATTACTTCTTTGAACGAAATGATAGCTGTGCTGGCAGACCAGTAATTGAACAAGTAACCACTGTCTAATTGGTTCTGAAAATCTGCTAATTAACCATCATGCAAAGTGGTAAGTATTTTATACATTTGTGTATTTATTTATAACTCTACCTTTTTGAAATTAACAGTCGTTCACCTATGCGTACTTCTTCCAGTAAATTTTTGGTTATCTGTGAGCAAGAATTTGTTCTTCTTTCACATCATTTAACAGACATTATGCTTCAAAATAACATGACCTTTTTTTTAGGCTTAGTTTGCTATTCATCTTTGCTTTGAACAGAAGTTTATTTCAGTCGAAGTGACATTAGGTGATCTTTTCGTTGCTTGGTGGGTCGAGAGTAGTGGGTATTTCATGGATTAATTGACGAGTGCGTCTAGACACCACCATTATGCATAATATGTTGTGATGTTATTCGAGAATATATTTGGGTAGGGAAAATAAAAGACAATTCAGTGGTAGAATA</genome_strand>
        <mrna_strand>TATGCCTGGAAATTGTTTCTAAGCATCAGGAAGCCATACCATACTGCCAAAAAGCTATTTTAACTTGCAAGTCGCGGCTGCAGAGACTCACTGAGGAAATAAAGCTTTTGTCAGAATCAACAGAAAGATTAGCTACTACCGATGTAGATCAGATTGCGAGACAGTCTTCCAGTATATCACAGTCTGACTCTGTATCTGCTAAAGAAGCTGAAGTTGAAACGCTCACTGAACTTTCTGCAGAATTGGAGAAGAAG................................................................................CTTGAAGATTTGCAGCAGTGTATGTCAAATCCATCATCTATCCTCTCCGATATTTTGGGAATGGTGTCTGCGAAAGCAAGAAGTCTAGAGAATGCTGATGCTTCTGTAGCTGTGAACTCCTCACAGATGGGTGTTGGTACCAGTGGTAGCGGAAGTTTTGACTCTCCAACTGTTTCCACTGCCCACACAAATGGTGCAGCTGGAATAACCCATCTTGGAGTAGTTGGAAGAGGAGTCAAGAGGGTGCATCTAAACACAACCACAGAATCTAGTCCAGCGAAAAAACCTGCATCTGAGCAGCCGTCAGATAATGGAGATGGCACTGCCTCTTAAAGCATGTATTGTTGGTGCTTCAATTAAGTTACGGTTAACATTTCAATTTAGCTTATTGATAACATTGGTGGATTACCTTAGTTTGTTGCATTCTCTGTTGGTTAGCTGGGAAGTGTGTTGCCACAGATCGCATCAGTTTATTTCCTTAAATTAATTACCTTGTATGCATGTTGACTATTCAAAAAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAACTCGAGGGGGGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E259146" ref_strand="+" ref_description="SGN-E259146 	[cLEG-41-L4]">
      <seq>ctgcagggatattttgggaatggtgtctgcgaaagcaagaagtctagagaatgctgatgcttctgtagctgtgaactcctcacagatgggtgttggtaccagtggtagcggaagttttgactctccaactgtttccactgcccacacaaatggtgcagctggaataacccatcttggagtagttggaagaggagtcaagagggtgcatctaaacacaaccacagaatctagtccagcgaaaaaacctgcatctgagcagccgtcagataatggagatggcactgcctcttaaagcatgtattgttggtgcttcaattaagttacggttaacatttcaatttagcttattgataacattggtggattaccttagtttgttgcattctctgttggttagctgggaagtgtgttgccacagatcgcatcagtttatttccttaaattaattaccttgtatgcatgttgactattcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="38133" stop="103012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38426" g_stop="38898" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38899" i_stop="39494" i_length="596">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.608" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39495" g_stop="39511" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="490" r_length="17" r_score="0.647"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E259146" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38426" e_stop="38898"/>
          <exon e_start="39495" e_stop="39511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTCCGATATTTTGGGAATGGTGTCTGCGAAAGCAAGAAGTCTAGAGAATGCTGATGCTTCTGTAGCTGTGAACTCCTCACAGATGGGTGTTGGTACCAGTGGTAGCGGAAGTTTTGACTCTCCAACTGTTTCCACTGCCCACACAAATGGTGCAGCTGGAATAACCCATCTTGGAGTAGTTGGAAGAGGAGTCAAGAGGGTGCATCTAAACACAACCACAGAATCTAGTCCAGCGAAAAAACCTGCATCTGAGCAGCCGTCAGATAATGGAGATGGCACTGCCTCTTAAAGCATGTATTGTTGGTGCTTCAATTAAGTTACGGTTAACATTTCAATTTAGCTTATTGATAACATTGGTGGATTACCTTAGTTTGTTGCATTCTCTGTTGGTTAGCTGGGAAGTGTGTTGCCACAGATCGCATCAGTTTATTTCCTTAAATTAATTACCTTGTATGCATGTTGACTATTCAGTATGTGTTGCTTTGCTTCTTCTGCAGTATGTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATCTACGTAAAGACTCAGAAGTTGATTACTTCTTTGAACGAAATGATAGCTGTGCTGGCAGACCAGTAATTGAACAAGTAACCACTGTCTAATTGGTTCTGAAAATCTGCTAATTAACCATCATGCAAAGTGGTAAGTATTTTATACATTTGTGTATTTATTTATAACTCTACCTTTTTGAAATTAACAGTCGTTCACCTATGCGTACTTCTTCCAGTAAATTTTTGGTTATCTGTGAGCAAGAATTTGTTCTTCTTTCACATCATTTAACAGACATTATGCTTCAAAATAACATGACCTTTTTTTTAGGCTTAGTTTGCTATTCATCTTTGCTTTGAACAGAAGTTTATTTCAGTCGAAGTGACATTAGGTGATCTTTTCGTTGCTTGGTGGGTCGAGAGTAGTGGGTATTTCATGGATTAATTGACGAGTGCGTCTAGACACCACCATTATGCATAATATGTTGTGATGTTATTCGAGAATATATTTGGGTAGGGAAAATAAAAGACAAT</genome_strand>
        <mrna_strand>CTGCAGGGATATTTTGGGAATGGTGTCTGCGAAAGCAAGAAGTCTAGAGAATGCTGATGCTTCTGTAGCTGTGAACTCCTCACAGATGGGTGTTGGTACCAGTGGTAGCGGAAGTTTTGACTCTCCAACTGTTTCCACTGCCCACACAAATGGTGCAGCTGGAATAACCCATCTTGGAGTAGTTGGAAGAGGAGTCAAGAGGGTGCATCTAAACACAACCACAGAATCTAGTCCAGCGAAAAAACCTGCATCTGAGCAGCCGTCAGATAATGGAGATGGCACTGCCTCTTAAAGCATGTATTGTTGGTGCTTCAATTAAGTTACGGTTAACATTTCAATTTAGCTTATTGATAACATTGGTGGATTACCTTAGTTTGTTGCATTCTCTGTTGGTTAGCTGGGAAGTGTGTTGCCACAGATCGCATCAGTTTATTTCCTTAAATTAATTACCTTGTATGCATGTTGACTATTCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E262621" ref_strand="+" ref_description="SGN-E262621 	[cLEG-63-N23]">
      <seq>ttttgggaatggtgtctgcgaaagcaagaagtctagagaatgctgatgcttctgtagctgtgaactcctcacagatgggtgttggtaccagtggtagcggaagttttgactctccaactgtttccactgcccacacaaatggtgcagctggaataacccatcttggagtagttggaagaggagtcaagagggtgcatctaaacacaaccacagaatctagtccagcgaaaaaacctgcatctgagcagccgtcagataatggagatggcactgcctcttaaagcatgtattgttggtgcttcaattaagttacggttaacatttcaatttagcttattgataacattggtggattaccttagtttgttgcattctctgttggttagctgggaagtgtgttgccacagatcgcatcagtttatttccttaaattaattaccttgtatgcatgttgactattcaaaaaaaaaaaaaaaaactcgaactttagattcttaaaacaaagctgaattatatggaggcaaataagtctatggtgaaagtgggtgctttcttgataattcttgtatcatcatgctttcaatctctcactgctcaagattttggaatcgaaagtagcgatggctttaatgtattgcaagtacatgatgtgtctcaatctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="38137" stop="77236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38437" g_stop="38898" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38899" i_stop="39494" i_length="596">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.608" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39495" g_stop="39514" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="482" r_length="20" r_score="0.650"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39515" i_stop="40606" i_length="1092">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40607" g_stop="40636" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="510" r_length="28" r_score="0.700"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40637" i_stop="40823" i_length="187">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40824" g_stop="40851" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="536" r_length="26" r_score="0.571"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40852" i_stop="42391" i_length="1540">
            <donor d_prob="0.413" d_score="0.00"/>
            <acceptor a_prob="0.831" a_score="0.60"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42392" g_stop="42444" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="584" r_length="48" r_score="0.604"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42445" i_stop="43403" i_length="959">
            <donor d_prob="0.163" d_score="0.60"/>
            <acceptor a_prob="0.539" a_score="0.55"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43404" g_stop="43485" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="664" r_length="80" r_score="0.549"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E262621" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.017" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38437" e_stop="38898"/>
          <exon e_start="39495" e_stop="39514"/>
          <exon e_start="40607" e_stop="40636"/>
          <exon e_start="40824" e_stop="40851"/>
          <exon e_start="42392" e_stop="42444"/>
          <exon e_start="43404" e_stop="43485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGGAATGGTGTCTGCGAAAGCAAGAAGTCTAGAGAATGCTGATGCTTCTGTAGCTGTGAACTCCTCACAGATGGGTGTTGGTACCAGTGGTAGCGGAAGTTTTGACTCTCCAACTGTTTCCACTGCCCACACAAATGGTGCAGCTGGAATAACCCATCTTGGAGTAGTTGGAAGAGGAGTCAAGAGGGTGCATCTAAACACAACCACAGAATCTAGTCCAGCGAAAAAACCTGCATCTGAGCAGCCGTCAGATAATGGAGATGGCACTGCCTCTTAAAGCATGTATTGTTGGTGCTTCAATTAAGTTACGGTTAACATTTCAATTTAGCTTATTGATAACATTGGTGGATTACCTTAGTTTGTTGCATTCTCTGTTGGTTAGCTGGGAAGTGTGTTGCCACAGATCGCATCAGTTTATTTCCTTAAATTAATTACCTTGTATGCATGTTGACTATTCAGTATGTGTTGCTTTGCTTCTTCTGCAGTATGTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATCTACGTAAAGACTCAGAAGTTGATTACTTCTTTGAACGAAATGATAGCTGTGCTGGCAGACCAGTAATTGAACAAGTAACCACTGTCTAATTGGTTCTGAAAATCTGCTAATTAACCATCATGCAAAGTGGTAAGTATTTTATACATTTGTGTATTTATTTATAACTCTACCTTTTTGAAATTAACAGTCGTTCACCTATGCGTACTTCTTCCAGTAAATTTTTGGTTATCTGTGAGCAAGAATTTGTTCTTCTTTCACATCATTTAACAGACATTATGCTTCAAAATAACATGACCTTTTTTTTAGGCTTAGTTTGCTATTCATCTTTGCTTTGAACAGAAGTTTATTTCAGTCGAAGTGACATTAGGTGATCTTTTCGTTGCTTGGTGGGTCGAGAGTAGTGGGTATTTCATGGATTAATTGACGAGTGCGTCTAGACACCACCATTATGCATAATATGTTGTGATGTTATTCGAGAATATATTTGGGTAGGGAAAATAAAAGACAATTCAGTGGTAGAATATTGTAAGACAACATTCCTCTGGCAGGTAAGTCGTACGAATGTTTCCGACAGTAAGCGCACTTTCATGTGAAGTAAACCTGCTCTGTGTCGTTTATATACTTCTAAAGATGCTCTTAAGCAATATTGATTTAGTGCTGAGAACCATATAGTAATAGCATGTCTTGTCTGATGATAGTATGGAAGCAGACAAACACCAAATGCCAATGTGGTACCCTAGGGCTAACAAAAGTCCCTAGTAACTTTGTCTAGGAAAAACATTTTAGGTGAATACAGAAAGAACCAATACGATACCATCAAAGGAACTTTTAACGATTGGTCGTTACCACCAAAGTTGATGGAACTTGTTTTTATAGTGGATTGGTCCAGAGTTGTGAGACAGAGAAAATGTGTTATAGAGTTGACTGCAAAAAATGCGGCAAGTACTCCTGGGGTGGGTGTGGTAAACATTTGAACACCCTCTATGGTAGCATCCAACAAGGCAATCATTGTAATTGTCGTCCTTGGCCTGGAGTTGTCATGCCCTCTTCTCAGACCATCACCCAAAACAAACAAACTGTTACCCAAAACGAATGTGATCCCACCACCACCACAGCAGGTATATACACAAATCTAGAATGAATATAACTTAACGTCACGATTCAACTTGAATGATTTAATGTAAATATTAAGTATAAAAAAGTTTGATTTTTTCTTTTAAAATTACGCTTCAATAGGAAAGTAGTACACTGCCACTTTTTATTTTGTTTATTCAAGAGTTTGGTAGACCTTTAATTTGTGATGGTCTCATTATATGTCAAGTGCCAACTAAAAAAAAGGAAGAGGAAATTCTCTCCTAAAGTTTTTCTTTTTAATATATATATTTTTAAATAACTATCCGAAGACACCGGAAATTCTAGTGTTTACAGCTTTTGACAATTTTGTTCATACTTTTTCTATTGAAAACGATTCGAAATTTTAAGCTATAATTTATTTCTTCGTTTCTCTAGATACTTCATTTTCAAAAAAGTGATTTATTTGTTGGGGTGGAGACAAGCAATGATGGTGCTTATAGATTTAATCTTATCAAACAGTACTTTTTTTAATCCTTAGATTCGAAAAACCATAATATTAACTAGATTCGCACTTCATTTAAGTCCGACTCACATCATTATCATCATATTAAACAAAAAATAAGTTAAAGCTGATTTATAAGGATCAGTGTATATTGACAATTATTCTACTACGTAGATTTGAATCGATAATGTGAGAAAGTTTATCTAAAATCGTTGATTGATTTCAAAATAATTGTTGTTTTTCAGGTACTCAACGAGGCGATGATGCCGTTGGGTAATAGCTAAACTGCTACTGGAGACCAATAAATAAAGTGTATTATTAATCAATTATATAATATATAATAACAGTCATTTGTAATAAATTAATACAAATAATGCGAATTTTAAGGTCAATACACATTGACCGAACACTCTAATTTGCTTACGAAGTTGTAAAATAAATTTTGTTTTCCAGAATTGAGTCTTCTTTTAACCTTGTGCAGGGTGTTTTGTAAATTTTTATTTATTCAATAAATATAAGTAATTAATCGTGGGTTTTGTGCCGCTTTTGGGTTTTTTCTTTATTATTCTCAAGAAGCTAGTAATGTTTTGGCCTTTCTGCCTCCATTTCTCAAATTCACTTTTGAATTTGAATATTATAGGTTCAAAATTAGAAATTTTAGTATTTGATTTATTACATTGGTAATCTATTTATCTAATGTATATAAATTAATATATATGGAAGATTTGAGTTTTTGCCTTTTAGATTTATACATATAGAGGTTGAGCCTATCATTATTTATTTTTCACCTAGGCCACATGGGCTATGATATGAATATTTGGACATCGTGGGACCAGTTCGATCAATCGAGTGTCAATTGAGCATCTTCCTTAAAGGCAAATGTCAACTTATAGTCCTATTATTAGTCACTTAATATTAAAGAATGCCCACCTAATATGGCTATAATCATGGCATTTTATTGTCATTCACTTTGGAACATGGATAGTTTTAGGGGAGGACATTCCATGGATGCACTTGTATAAAATAATGTGTCTTTTTTATAGTAGTAGCATTTTAATATTATGATTAGGAATGTTAAATAGGTAAGTGCAGAAATGTATTAAGGTGAGATGAGTTAAACAATGAATCAGATACTAGCTTAATTAGTTTTTAGATGAGTGAATTTGATGTACAAAATAGATCGAGTTAATAAACATCAATGAGTTATTAACTATTCCAAATTTAAACAGATTAAATCAATTATATTTTCACGTTGAGTCTTTGTAAGAGAATGTTTAGTTGTTTAGCAAACGTCTGCAATTTGCACCATTTAAAGTCATCACCATCTGCAGTAAGATCAAATAATTAAAAGAGTACCATAATATAAAAATCAGATCTCCTGTCTTCGTTATACTAATATTTAAATAGAATATATTATTGTCGTGTTATTTATTTTGAATTTGAAATGTTAGATAGAAGAATTAATATTGAGCAACCTCTCTTTACGTGGACCTCATAAAGTCGACACCATTTATTGCCCTACTAATAAATATAGGTATGTTTTAATTAATGGCAGGCAGTTGCCCATTTTTAAAATTTTCACGTCTCAGTTTTCCAACCAAACTTTGGTTTCCACATTGAAGAAGACTATGCAGTAAGAAAATCAAAATTAATCGATGTTTTAATACAAATATTGAATATAAGGTAAGAAATCAAAAGTGAAATTGAATTATATCACGGTATACATGTGAGCTACCAAACTCTAGAGTGTCAAATTGCTCTCAAGCTGTTATAAATTTGTTGTGCTATTTATTTTTTAATTTGATTTGAGCAGTAAATGTGGGCTTTATATTGAGTAAAATTCAAATTGTCATGGATCCTTAAAAGGTACGATAACTGGACACAGCATATATGGGCCACCTTTAGCTGGAGGCCCCTTTTGGGACCATCCATATTTAAGTCATTATAACTCCATAATCTTGATTTGAAATCGGTTGTTGCATTAGTCTTCTTTTTAACTTTTTGACTCCATTGACTTATTACTATCAAACGTGTGTGGCGAAGTGGATGAGATTGATCTTTCTTCAAGTAGAGATCTCGTATATATGTTTGTTTCAATTAATTTGAAAATGAGATACGATTCATGTATAATCAAACATACCCGTCCAATGAAACAAAGTAAATTTAAATGTTAATTATGACAACAACGTGAATACTCCTTTAATCAAGTTGCGTATGATTATAATCTCTAATTAGGCCCACCCAAATACATTATAGTAATATAATAGGGTAGTGTTGATGCAGAAAAGCAATAACGATAGTTGGCAAGCAAAGTGTGTTTTTGTTGCTTATAAACAGAGAAAAAAGGGAACAATTTAATGATGACAGTAATAATTTTTCCTGCTTGTGTGTATTCTTACAAAGTGGATTTTCAAAGTGCTTTTTGAATCCTCCACCAAGCTTTCCTCTTCTTCCTTCAAACCCTAGAGAGAGAAAAAAGAAGATTCTGATCTGATTCATCATCAAAAGGAAAGTGGGTACAAGTTTGAAGACAGAGATTTTTGGAAAAGAAAACACATCAATTTCATCATCATCAGTATATCTTTTTGCTGTTTTTCAACCTACATAATCATTTCACCTAGACTTTCTTACAAACACCTTATCTTCATGGATCTATCATAGTCCGACTTCCTTGGTGAAAGATAAACTGAAGTTTCAACTTTCTTTGTTACATTGAAGAAAAATGGCGCACACGGAGCACCCCACCACCAAAGGCCAAGCATGGTGAGTAACAATAGTATATTTTCCATTTTCTTCTTCTTCTTCTTCACGTATTGTTAACTCAGAT-TCACTGTTTTACAGGTTTTGTACTACAGGATTACCCAGTGATATCAT-CATTG-AAGTTGAAGATATGACCTTCCATCTTCA</genome_strand>
        <mrna_strand>TTTTGGGAATGGTGTCTGCGAAAGCAAGAAGTCTAGAGAATGCTGATGCTTCTGTAGCTGTGAACTCCTCACAGATGGGTGTTGGTACCAGTGGTAGCGGAAGTTTTGACTCTCCAACTGTTTCCACTGCCCACACAAATGGTGCAGCTGGAATAACCCATCTTGGAGTAGTTGGAAGAGGAGTCAAGAGGGTGCATCTAAACACAACCACAGAATCTAGTCCAGCGAAAAAACCTGCATCTGAGCAGCCGTCAGATAATGGAGATGGCACTGCCTCTTAAAGCATGTATTGTTGGTGCTTCAATTAAGTTACGGTTAACATTTCAATTTAGCTTATTGATAACATTGGTGGATTACCTTAGTTTGTTGCATTCTCTGTTGGTTAGCTGGGAAGTGTGTTGCCACAGATCGCATCAGTTTATTTCCTTAAATTAATTACCTTGTATGCATGTTGACTATTCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAACTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTTAGATTCTTAAAA-CA-AAGCTGAA...........................................................................................................................................................................................TTA-T-ATGGAGGCAAATAAGTCTATGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAGTGGGTGCTTTCTTGA-T--AATTC-TTGTATCAT-CATGCTTTCAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCACTG-CTCA-AGATTTTGGAAT-CGAAAGTAGCGATGGCTTTAATGTATTGCAAGTACATGATGTG-TC-TCAATCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E255656" ref_strand="+" ref_description="SGN-E255656 	[cLEG-36-B14]">
      <seq>ttttgggaatggtgtctgcgaaagcaagaagtctagagaatgctgatgcttctgtagctgtgaactcctcacagatgggtgttggtaccagtggtagcggaagttttgactctccaactgtttccactgcccacacaaatggtgcagctggaataacccatcttggagtagttggaagaggagtcaagagggtgcatctaaacacaaccacagaatctagtccagcgaaaaaacctgcatctgagcagccgtcagataatggagatggcactgcctcttaaagcatgtattgttggtgcttcaattaagttacggttaacatttcaatttagcttattgataacattggtggattaccttagtttgttgcattctctgttggttagctgggaagtgtgttgccacagatcgcatcagtttatttccttaaattaattaccttgtatgcatgttgactattcaaaaaaaaaaaaaaaaaactcgaactttagattcttaaaaacaaagctgaattatatggaggcaaataagtctatggtgaagttggttgctttcttgataattcttgtatcatcatgctttcaatctctcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="38137" stop="103012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38437" g_stop="38899" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="463" r_length="463" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38900" i_stop="39494" i_length="595">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.608" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39495" g_stop="39514" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="483" r_length="20" r_score="0.650"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39515" i_stop="40511" i_length="997">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.415" a_score="0.47"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40512" g_stop="40566" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="540" r_length="57" r_score="0.509"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40567" i_stop="40787" i_length="221">
            <donor d_prob="0.695" d_score="0.47"/>
            <acceptor a_prob="0.000" a_score="0.57"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40788" g_stop="40840" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="594" r_length="54" r_score="0.566"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E255656" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38437" e_stop="38899"/>
          <exon e_start="39495" e_stop="39514"/>
          <exon e_start="40512" e_stop="40566"/>
          <exon e_start="40788" e_stop="40840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGGAATGGTGTCTGCGAAAGCAAGAAGTCTAGAGAATGCTGATGCTTCTGTAGCTGTGAACTCCTCACAGATGGGTGTTGGTACCAGTGGTAGCGGAAGTTTTGACTCTCCAACTGTTTCCACTGCCCACACAAATGGTGCAGCTGGAATAACCCATCTTGGAGTAGTTGGAAGAGGAGTCAAGAGGGTGCATCTAAACACAACCACAGAATCTAGTCCAGCGAAAAAACCTGCATCTGAGCAGCCGTCAGATAATGGAGATGGCACTGCCTCTTAAAGCATGTATTGTTGGTGCTTCAATTAAGTTACGGTTAACATTTCAATTTAGCTTATTGATAACATTGGTGGATTACCTTAGTTTGTTGCATTCTCTGTTGGTTAGCTGGGAAGTGTGTTGCCACAGATCGCATCAGTTTATTTCCTTAAATTAATTACCTTGTATGCATGTTGACTATTCAGTATGTGTTGCTTTGCTTCTTCTGCAGTATGTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATCTACGTAAAGACTCAGAAGTTGATTACTTCTTTGAACGAAATGATAGCTGTGCTGGCAGACCAGTAATTGAACAAGTAACCACTGTCTAATTGGTTCTGAAAATCTGCTAATTAACCATCATGCAAAGTGGTAAGTATTTTATACATTTGTGTATTTATTTATAACTCTACCTTTTTGAAATTAACAGTCGTTCACCTATGCGTACTTCTTCCAGTAAATTTTTGGTTATCTGTGAGCAAGAATTTGTTCTTCTTTCACATCATTTAACAGACATTATGCTTCAAAATAACATGACCTTTTTTTTAGGCTTAGTTTGCTATTCATCTTTGCTTTGAACAGAAGTTTATTTCAGTCGAAGTGACATTAGGTGATCTTTTCGTTGCTTGGTGGGTCGAGAGTAGTGGGTATTTCATGGATTAATTGACGAGTGCGTCTAGACACCACCATTATGCATAATATGTTGTGATGTTATTCGAGAATATATTTGGGTAGGGAAAATAAAAGACAATTCAGTGGTAGAATATTGTAAGACAACATTCCTCTGGCAGGTAAGTCGTACGAATGTTTCCGACAGTAAGCGCACTTTCATGTGAAGTAAACCTGCTCTGTGTCGTTTATATACTTCTAAAGATGCTCTTAAGCAATATTGATTTAGTGCTGAGAACCATATAGTAATAGCATGTCTTGTCTGATGATAGTATGGAAGCAGACAAACACCAAATGCCAATGTGGTACCCTAGGGCTAACAAAAGTCCCTAGTAACTTTGTCTAGGAAAAACATTTTAGGTGAATACAGAAAGAACCAATACGATACCATCAAAGGAACTTTTAACGATTGGTCGTTACCACCAAAGTTGATGGAACTTGTTTTTATAGTGGATTGGTCCAGAGTTGTGAGACAGAGAAAATGTGTTATAGAGTTGACTGCAAAAAATGCGGCAAGTACTCCTGGGGTGGGTGTGGTAAACATTTGAACACCCTCTATGGTAGCATCCAACAAGGCAATCATTGTAATTGTCGTCCTTGGCCTGGAGTTGTCATGCCCTCTTCTCAGACCATCACCCAAAACAAACAAACTGTTACCCAAAACGAATGTGATCCCACCACCACCACAGCAGGTATATACACAAATCTAGAATGAATATAACTTAACGTCACGATTCAACTTGAATGATTTAATGTAAATATTAAGTATAAAAAAGTTTGATTTTTTCTTTTAAAATTACGCTTCAATAGGAAAGTAGTACACTGCCACTTTTTATTTTGTTTATTCAAGAGTTTGGTAGACCTTTAATTTGTGATGGTCTCATTATATGTCAAGTGCCAACTAAAAAAAAGGAAGAGGAAATTCTCTCCTAAAGTTTTTCTTTTTAATATATATATTTTTAAATAACTATCCGAAGACACCGGAAATTCTAGTGTTTACAGCTTTTGACAATTTTGTTCATACTTTTTCTATTGAAAACGATTCGAAATTTTAAGCTATAATTTATTTCTTCGTTTCTCTAGATACTTCATTTTC-AAAAAAGTGA-TTTATTTGTTGGGGTGGAGACAAG-CAATGATGGTGCTTATAGATTTAATCTTATCAAACAGTACTTTTTTTAATCCTTAGATTCGAAAAACCATAATATTAACTAGATTCGCACTTCATTTAAGTCCGACTCACATCATTATCATCATATTAAACAAAAAATAAGTTAAAGCTGATTTATAAGGATCAGTGTATATTGACAATTATTCTACTACGTAGATTTGAATCGATAATGTGAGAAAGTTTATCTAAAATCGTTGATTGATTTCAAAATAATTGTTGT-TTTTCAGGTACTCAACGAGGCGAT</genome_strand>
        <mrna_strand>TTTTGGGAATGGTGTCTGCGAAAGCAAGAAGTCTAGAGAATGCTGATGCTTCTGTAGCTGTGAACTCCTCACAGATGGGTGTTGGTACCAGTGGTAGCGGAAGTTTTGACTCTCCAACTGTTTCCACTGCCCACACAAATGGTGCAGCTGGAATAACCCATCTTGGAGTAGTTGGAAGAGGAGTCAAGAGGGTGCATCTAAACACAACCACAGAATCTAGTCCAGCGAAAAAACCTGCATCTGAGCAGCCGTCAGATAATGGAGATGGCACTGCCTCTTAAAGCATGTATTGTTGGTGCTTCAATTAAGTTACGGTTAACATTTCAATTTAGCTTATTGATAACATTGGTGGATTACCTTAGTTTGTTGCATTCTCTGTTGGTTAGCTGGGAAGTGTGTTGCCACAGATCGCATCAGTTTATTTCCTTAAATTAATTACCTTGTATGCATGTTGACTATTCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAACTCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-ACTTTAGATTCTTAAAAACAAAGCTGAATTATATGGAGGCAAATAAGTCTATGGTG.............................................................................................................................................................................................................................AAGTTGGTTGCTTTCTTGATAATTCTTGTATCATCATGCTTTCAATCTCTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E255954" ref_strand="+" ref_description="SGN-E255954 	[cLEG-35-O13]">
      <seq>ttttgggaatggtgtctgcgaaagcaagaagtctagagaatgctgatgcttctgtagctgtgaactcctcacagatgggtgttggtaccagtggtagcggaagttttgactctccaactgtttccactgcccacacaaatggtgcagctggaataacccatcttggagtagttggaagaggagtcaagagggtgcatctaaacacaaccacagaatctagtccagcgaaaaaacctgcatctgagcagccgtcagataatggagatggcactgcctcttaaagcatgtattgttggtgcttcaattaagttacggttaacatttcaatttagcttattgataacattggtggattaccttagtttgttgcattctctgttggttagctgggaagtgtgttgccacagatcgcatcagtttatttccttaaattaattaccttgtatgcatgttgactattcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="38137" stop="103012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38437" g_stop="38898" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38899" i_stop="39494" i_length="596">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.608" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39495" g_stop="39511" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="479" r_length="17" r_score="0.647"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E255954" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38437" e_stop="38898"/>
          <exon e_start="39495" e_stop="39511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGGAATGGTGTCTGCGAAAGCAAGAAGTCTAGAGAATGCTGATGCTTCTGTAGCTGTGAACTCCTCACAGATGGGTGTTGGTACCAGTGGTAGCGGAAGTTTTGACTCTCCAACTGTTTCCACTGCCCACACAAATGGTGCAGCTGGAATAACCCATCTTGGAGTAGTTGGAAGAGGAGTCAAGAGGGTGCATCTAAACACAACCACAGAATCTAGTCCAGCGAAAAAACCTGCATCTGAGCAGCCGTCAGATAATGGAGATGGCACTGCCTCTTAAAGCATGTATTGTTGGTGCTTCAATTAAGTTACGGTTAACATTTCAATTTAGCTTATTGATAACATTGGTGGATTACCTTAGTTTGTTGCATTCTCTGTTGGTTAGCTGGGAAGTGTGTTGCCACAGATCGCATCAGTTTATTTCCTTAAATTAATTACCTTGTATGCATGTTGACTATTCAGTATGTGTTGCTTTGCTTCTTCTGCAGTATGTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATCTACGTAAAGACTCAGAAGTTGATTACTTCTTTGAACGAAATGATAGCTGTGCTGGCAGACCAGTAATTGAACAAGTAACCACTGTCTAATTGGTTCTGAAAATCTGCTAATTAACCATCATGCAAAGTGGTAAGTATTTTATACATTTGTGTATTTATTTATAACTCTACCTTTTTGAAATTAACAGTCGTTCACCTATGCGTACTTCTTCCAGTAAATTTTTGGTTATCTGTGAGCAAGAATTTGTTCTTCTTTCACATCATTTAACAGACATTATGCTTCAAAATAACATGACCTTTTTTTTAGGCTTAGTTTGCTATTCATCTTTGCTTTGAACAGAAGTTTATTTCAGTCGAAGTGACATTAGGTGATCTTTTCGTTGCTTGGTGGGTCGAGAGTAGTGGGTATTTCATGGATTAATTGACGAGTGCGTCTAGACACCACCATTATGCATAATATGTTGTGATGTTATTCGAGAATATATTTGGGTAGGGAAAATAAAAGACAAT</genome_strand>
        <mrna_strand>TTTTGGGAATGGTGTCTGCGAAAGCAAGAAGTCTAGAGAATGCTGATGCTTCTGTAGCTGTGAACTCCTCACAGATGGGTGTTGGTACCAGTGGTAGCGGAAGTTTTGACTCTCCAACTGTTTCCACTGCCCACACAAATGGTGCAGCTGGAATAACCCATCTTGGAGTAGTTGGAAGAGGAGTCAAGAGGGTGCATCTAAACACAACCACAGAATCTAGTCCAGCGAAAAAACCTGCATCTGAGCAGCCGTCAGATAATGGAGATGGCACTGCCTCTTAAAGCATGTATTGTTGGTGCTTCAATTAAGTTACGGTTAACATTTCAATTTAGCTTATTGATAACATTGGTGGATTACCTTAGTTTGTTGCATTCTCTGTTGGTTAGCTGGGAAGTGTGTTGCCACAGATCGCATCAGTTTATTTCCTTAAATTAATTACCTTGTATGCATGTTGACTATTCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E243703" ref_strand="+" ref_description="SGN-E243703 	[cLED-35-G19]">
      <seq>taccaaccttcctacagagattagctcaagaacttcaacaaccacaaggattctcttcggcttattgagaacagcaaacatactaaatgcttcggaagctgctcgagctgcactagagcggaaaatcggatctcaactggagcacgccacattagacgatcttctcattccaagctactcttatctgaatgaaacgttatacgatgtcgcttgtgtggagagaatattaggatattttttaaccggattggaagagaggtctaccgctagaattcaaggcgaagaagaaaacatcagtgtcagatccacggcgctaatgttagtcggcaagttaattgacggttacttatcagaaatagcctctgataataatttactaccggaaaaattctgtgaattagctgttgcattgccggaccaagcaagactctttgatgatggcctttacagagctgtcgatgtgtatctcaaggcgcatccatggatatcggaagcggagagggagcaaatatgcggagttatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="44069" stop="45281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44369" g_stop="44840" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44841" i_stop="44928" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44929" g_stop="44981" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="525" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E243703" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44369" e_stop="44840"/>
          <exon e_start="44929" e_stop="44981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCAACCTTCCTACAGAGATTAGCTCAAGAACTTCAACAACCACAAGGATTCTCTTCGGCTTATTGAGAACAGCAAACATACTAAATGCTTCGGAAGCTGCTCGAGCTGCACTAGAGCGGAAAATCGGATCTCAACTGGAGCACGCCACATTAGACGATCTTCTCATTCCAAGCTACTCTTATCTGAATGAAACGTTATACGATGTCGCTTGTGTGGAGAGAATATTAGGATATTTTTTAACCGGATTGGAAGAGAGGTCTACCGCTAGAATTCAAGGCGAAGAAGAAAACATCAGTGTCAGATCCACGGCGCTAATGTTAGTCGGCAAGTTAATTGACGGTTACTTATCAGAAATAGCCTCTGATAATAATTTACTACCGGAAAAATTCTGTGAATTAGCTGTTGCATTGCCGGACCAAGCAAGACTCTTTGATGATGGCCTTTACAGAGCTGTCGATGTGTATCTCAAGGTAATGACATTTTCTTAATTATAGAAGTTATTCACTTTTTTAGTTCTATCATTTGTGTTTAATATTGTTAACTTAATTCCTTATGCAGGCGCATCCATGGATATCGGAAGCGGAGAGGGAGCAAATATGCGGAGTTATGGA</genome_strand>
        <mrna_strand>TACCAACCTTCCTACAGAGATTAGCTCAAGAACTTCAACAACCACAAGGATTCTCTTCGGCTTATTGAGAACAGCAAACATACTAAATGCTTCGGAAGCTGCTCGAGCTGCACTAGAGCGGAAAATCGGATCTCAACTGGAGCACGCCACATTAGACGATCTTCTCATTCCAAGCTACTCTTATCTGAATGAAACGTTATACGATGTCGCTTGTGTGGAGAGAATATTAGGATATTTTTTAACCGGATTGGAAGAGAGGTCTACCGCTAGAATTCAAGGCGAAGAAGAAAACATCAGTGTCAGATCCACGGCGCTAATGTTAGTCGGCAAGTTAATTGACGGTTACTTATCAGAAATAGCCTCTGATAATAATTTACTACCGGAAAAATTCTGTGAATTAGCTGTTGCATTGCCGGACCAAGCAAGACTCTTTGATGATGGCCTTTACAGAGCTGTCGATGTGTATCTCAAG........................................................................................GCGCATCCATGGATATCGGAAGCGGAGAGGGAGCAAATATGCGGAGTTATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E233786" ref_strand="+" ref_description="SGN-E233786 	[cLED-14-B19]">
      <seq>taccaaccttcctacagagattagctcaagaacttcaacaaccacaaggattctcttcggcttattgagaacagcaaacatactaaatgcttcggaagctgctcgagctgcactagagcggaaaatcggatctcaactggagcacgccacattagacgatcttctcattccaagctactcttatctgaatgaaacgttatacgatgtcgcttgtgtggagagaatattaggatattttttaaccggattggaagagaggtctaccgctagaattcaaggcgaagaagaaaacatcagtgtcagatccacggcgctgatgttagtcggcaagttaattgacggttacttatcagaaatagcctctgataataatttactaccggaaaaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="44069" stop="45059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44369" g_stop="44759" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E233786" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44369" e_stop="44759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCAACCTTCCTACAGAGATTAGCTCAAGAACTTCAACAACCACAAGGATTCTCTTCGGCTTATTGAGAACAGCAAACATACTAAATGCTTCGGAAGCTGCTCGAGCTGCACTAGAGCGGAAAATCGGATCTCAACTGGAGCACGCCACATTAGACGATCTTCTCATTCCAAGCTACTCTTATCTGAATGAAACGTTATACGATGTCGCTTGTGTGGAGAGAATATTAGGATATTTTTTAACCGGATTGGAAGAGAGGTCTACCGCTAGAATTCAAGGCGAAGAAGAAAACATCAGTGTCAGATCCACGGCGCTAATGTTAGTCGGCAAGTTAATTGACGGTTACTTATCAGAAATAGCCTCTGATAATAATTTACTACCGGAAAAATTC</genome_strand>
        <mrna_strand>TACCAACCTTCCTACAGAGATTAGCTCAAGAACTTCAACAACCACAAGGATTCTCTTCGGCTTATTGAGAACAGCAAACATACTAAATGCTTCGGAAGCTGCTCGAGCTGCACTAGAGCGGAAAATCGGATCTCAACTGGAGCACGCCACATTAGACGATCTTCTCATTCCAAGCTACTCTTATCTGAATGAAACGTTATACGATGTCGCTTGTGTGGAGAGAATATTAGGATATTTTTTAACCGGATTGGAAGAGAGGTCTACCGCTAGAATTCAAGGCGAAGAAGAAAACATCAGTGTCAGATCCACGGCGCTGATGTTAGTCGGCAAGTTAATTGACGGTTACTTATCAGAAATAGCCTCTGATAATAATTTACTACCGGAAAAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E239552" ref_strand="+" ref_description="SGN-E239552 	[cLED-23-K13]">
      <seq>taccaaccttcctacagagattagctcaagaacttcaacaaccacaaggattctcttcggcttattgagaacagcaaacatactaaatgcttcggaagctgctcgagctgcactagagcggaaaatcggatctcaactggagcacgccacattagacgatcttctcattccaagctactcttatctgaatgaaacgttatacgatgtcgcttgtgtggagagaatattaggatattttttaaccggattggaagagaggtctaccgctagaattcaaggcgaagaagaaaacatcagtgtcagatccacggcgctaatgttagtcggcaagttaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="44069" stop="45007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44369" g_stop="44707" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E239552" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44369" e_stop="44707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCAACCTTCCTACAGAGATTAGCTCAAGAACTTCAACAACCACAAGGATTCTCTTCGGCTTATTGAGAACAGCAAACATACTAAATGCTTCGGAAGCTGCTCGAGCTGCACTAGAGCGGAAAATCGGATCTCAACTGGAGCACGCCACATTAGACGATCTTCTCATTCCAAGCTACTCTTATCTGAATGAAACGTTATACGATGTCGCTTGTGTGGAGAGAATATTAGGATATTTTTTAACCGGATTGGAAGAGAGGTCTACCGCTAGAATTCAAGGCGAAGAAGAAAACATCAGTGTCAGATCCACGGCGCTAATGTTAGTCGGCAAGTTAATTGA</genome_strand>
        <mrna_strand>TACCAACCTTCCTACAGAGATTAGCTCAAGAACTTCAACAACCACAAGGATTCTCTTCGGCTTATTGAGAACAGCAAACATACTAAATGCTTCGGAAGCTGCTCGAGCTGCACTAGAGCGGAAAATCGGATCTCAACTGGAGCACGCCACATTAGACGATCTTCTCATTCCAAGCTACTCTTATCTGAATGAAACGTTATACGATGTCGCTTGTGTGGAGAGAATATTAGGATATTTTTTAACCGGATTGGAAGAGAGGTCTACCGCTAGAATTCAAGGCGAAGAAGAAAACATCAGTGTCAGATCCACGGCGCTAATGTTAGTCGGCAAGTTAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E302095" ref_strand="+" ref_description="SGN-E302095 	[cLEW-19-O23]">
      <seq>ccacattatacgatcttctcattccaagctactcttatctgaatgaaacgttatacgatgtcgcttgtgtggagagaatattaggatattttttaaccggattggaagagaggtctaccgctagaattcaaggcgaagaagaaaacatcagtgtcagatccacggcgctaatgttagtcggcaagttaattgacggttacttatcagaaatagcctctgataataatttactaccggaaaaattctgtgaattagctgttgcattgccggaccaagcaagactctttgatgatggcctttacagagctgtcgatgtgtatctcaaggcgcatccatggatatcggaagcggagagggagcaaatatgcggagttatggattgccaaaagttaacactagaggcgtgtacacacgcagctcagaatgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="44215" stop="45331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44515" g_stop="44840" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44841" i_stop="44928" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44929" g_stop="45031" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="429" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E302095" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44515" e_stop="44840"/>
          <exon e_start="44929" e_stop="45031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACATTAGACGATCTTCTCATTCCAAGCTACTCTTATCTGAATGAAACGTTATACGATGTCGCTTGTGTGGAGAGAATATTAGGATATTTTTTAACCGGATTGGAAGAGAGGTCTACCGCTAGAATTCAAGGCGAAGAAGAAAACATCAGTGTCAGATCCACGGCGCTAATGTTAGTCGGCAAGTTAATTGACGGTTACTTATCAGAAATAGCCTCTGATAATAATTTACTACCGGAAAAATTCTGTGAATTAGCTGTTGCATTGCCGGACCAAGCAAGACTCTTTGATGATGGCCTTTACAGAGCTGTCGATGTGTATCTCAAGGTAATGACATTTTCTTAATTATAGAAGTTATTCACTTTTTTAGTTCTATCATTTGTGTTTAATATTGTTAACTTAATTCCTTATGCAGGCGCATCCATGGATATCGGAAGCGGAGAGGGAGCAAATATGCGGAGTTATGGATTGCCAAAAGTTAACACTAGAGGCGTGTACACACGCAGCTCAGAATGAAC</genome_strand>
        <mrna_strand>CCACATTATACGATCTTCTCATTCCAAGCTACTCTTATCTGAATGAAACGTTATACGATGTCGCTTGTGTGGAGAGAATATTAGGATATTTTTTAACCGGATTGGAAGAGAGGTCTACCGCTAGAATTCAAGGCGAAGAAGAAAACATCAGTGTCAGATCCACGGCGCTAATGTTAGTCGGCAAGTTAATTGACGGTTACTTATCAGAAATAGCCTCTGATAATAATTTACTACCGGAAAAATTCTGTGAATTAGCTGTTGCATTGCCGGACCAAGCAAGACTCTTTGATGATGGCCTTTACAGAGCTGTCGATGTGTATCTCAAG........................................................................................GCGCATCCATGGATATCGGAAGCGGAGAGGGAGCAAATATGCGGAGTTATGGATTGCCAAAAGTTAACACTAGAGGCGTGTACACACGCAGCTCAGAATGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E339354" ref_strand="+" ref_description="SGN-E339354 	[cTOF-4-A21]">
      <seq>ttcttcagtagatctcttacattgcattaaggatatgattatatttttttatttctgtttttgtgtttaaatcgtgaatgttgaagtattagttcctcaatgatgaacaaacagatgacgagtctgataatccattcttttaaaataatgaagacaatcgaggcatttgtctgagaggaaatcctatttgctacttctacctcgttattactacttcgctttttggtttttgattgtttatgagattttaaatctggtatagcaatcgctcttgattatataaccaagttttcattttttaaaaaagagatttaaaagtttcattctgtagttccttttgagtttagagtaagatttgcgcttgaaatgcgtggtaacatgttaccaattccaaaaatgttttccttttgaacttttgtgagatctgtgctttcaatgtgtgattttagggcttcactccaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="47147" stop="48212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47447" g_stop="47912" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E339354" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47447" e_stop="47912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCAGTAGATCTCTTACATTGCATTAAGGATATGATTATATTTTTTTATTTCTGTTTTTGTGTTTAAATCGTGAATGTTGAAGTATTAGTTCCTCAATGATGAACAAACAGATGACGAGTCTGATAATCCATTCTTTTAAAATAATGAAGACAATCGAGGCATTTGTCTGAGAGGAAATCCTATTTGCTACTTCTACCTCGTTATTACTACTTCGCTTTTTGGTTTTTGATTGTTTATGAGATTTTAAATCTGGTATAGCAATCGCTCTTGATTATATAACCAAGTTTTCATTTTTTAAAAAAGAGATTTAAAAGTTTCATTCTGTAGTTCCTTTTGAGTTTAGAGTAAGATTTGCGCTTGAAATGCGTGGTAACATGTTACCAATTCCAAAAATGTTTTCCTTTTGAACTTTTGTGAGATCTGTGCTTTCAATGTGTGATTTTAGGGCTTCACTCCAAAACA</genome_strand>
        <mrna_strand>TTCTTCAGTAGATCTCTTACATTGCATTAAGGATATGATTATATTTTTTTATTTCTGTTTTTGTGTTTAAATCGTGAATGTTGAAGTATTAGTTCCTCAATGATGAACAAACAGATGACGAGTCTGATAATCCATTCTTTTAAAATAATGAAGACAATCGAGGCATTTGTCTGAGAGGAAATCCTATTTGCTACTTCTACCTCGTTATTACTACTTCGCTTTTTGGTTTTTGATTGTTTATGAGATTTTAAATCTGGTATAGCAATCGCTCTTGATTATATAACCAAGTTTTCATTTTTTAAAAAAGAGATTTAAAAGTTTCATTCTGTAGTTCCTTTTGAGTTTAGAGTAAGATTTGCGCTTGAAATGCGTGGTAACATGTTACCAATTCCAAAAATGTTTTCCTTTTGAACTTTTGTGAGATCTGTGCTTTCAATGTGTGATTTTAGGGCTTCACTCCAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E253375" ref_strand="+" ref_description="SGN-E253375 	[cLEG-24-E23]">
      <seq>gattttggaaacatcgaacgtaatctcttggtccctgccataaataatttggagaaagaggactgcaaagtgtgatctcaattttatgctctttctagtgagaagatgtccagaatagaggaacttgttacatgggatgtttatggttcaggtccttctgaattctattatgatggagatgatttgacacatgcaatctcatggtgaagagattcttaagaattatttgataccacgagctatgctctcctctagggtggatggtgacttacataaatggattgatgctggaagtcgaggtaaaacagatgagcttattaggaagaagaagagtacaaaaagtcattcagctcctccattttaccaaggcaagaagaagttctttgccacggctgagtcttcaagaaaggcagcaggaaataagaatattatgactgttcatgatgtgccactcatgccagctgtaaggagactgcatcattctgtagaagctatctgcttggagcttcacgacagtcatcccatcaatgtgatcaatcttccaccccaagttgcggtgacagtgaattctctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="-" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="51295" stop="50029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50995" g_stop="50535" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50534" i_stop="50445" i_length="90">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50444" g_stop="50329" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="577" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="-" ref_id="SGN-E253375" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50995" e_stop="50535"/>
          <exon e_start="50444" e_stop="50329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTGGAAACATCGAACGTAATCTCTTGGTCCCTGCCATAAATAATTTGGAGAAAGAGGACTGCAAAGTGTGATCTCAATTTTATGCTCTTTCTAGTGAGAAGATGTCCAGAATAGAGGAACTTGTTACATGGGATGTTTATGGTTCAGGTCCTTCTGAATTCTATTATGATGGAGATGATTTGACACATGCAATCTCATGGTGAAGAGATTCTTAAGAATTATTTGATACCACGAGCTATGCTCTCCTCTAGGGTGGATGGTGACTTACATAAATGGATTGATGCTGGAAGTCGAGGTAAAACAGATGAGCTTATTAGGAAGAAGAAGAGTACAAAAAGTCATTCAGCTCCTCCATTTTACCAAGGCAAGAAGAAGTTCTTTGCCACGGCTGAGTCTTCAAGAAAGGCAGCAGGAAATAAGAATATTATGACTGTTCATGATGTGCCACTCATGCCAGGTAATTGGTCCTTGAGTGCTTGTTTGTGTTAATAATGAACGATGATAGAAAATGTGTACCTAATTAATGTTTTTTCTATCGCGCGTAAAGCTGTAAGGAGACTGCATCATTCTGTAGAAGCTATCTGCTTGGAGCTTCACGACAGTCATCCCATCAATGTGATCAATCTTCCACCCCAAGTTGCGGTGACAGTGAATTCTCTGATG</genome_strand>
        <mrna_strand>GATTTTGGAAACATCGAACGTAATCTCTTGGTCCCTGCCATAAATAATTTGGAGAAAGAGGACTGCAAAGTGTGATCTCAATTTTATGCTCTTTCTAGTGAGAAGATGTCCAGAATAGAGGAACTTGTTACATGGGATGTTTATGGTTCAGGTCCTTCTGAATTCTATTATGATGGAGATGATTTGACACATGCAATCTCATGGTGAAGAGATTCTTAAGAATTATTTGATACCACGAGCTATGCTCTCCTCTAGGGTGGATGGTGACTTACATAAATGGATTGATGCTGGAAGTCGAGGTAAAACAGATGAGCTTATTAGGAAGAAGAAGAGTACAAAAAGTCATTCAGCTCCTCCATTTTACCAAGGCAAGAAGAAGTTCTTTGCCACGGCTGAGTCTTCAAGAAAGGCAGCAGGAAATAAGAATATTATGACTGTTCATGATGTGCCACTCATGCCAG..........................................................................................CTGTAAGGAGACTGCATCATTCTGTAGAAGCTATCTGCTTGGAGCTTCACGACAGTCATCCCATCAATGTGATCAATCTTCCACCCCAAGTTGCGGTGACAGTGAATTCTCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E268895" ref_strand="+" ref_description="SGN-E268895 	[cLEM-4-J9]">
      <seq>tctttcaatatttttgtatgaacttatttcagtatattttcctgaacaaagaaaatggaaactaatcgttgggagggttatttcctgttaaacatgaagctgctgtcacatatgattttggaaacatcgaacgtaatctcttggtccctgccataaataatttggagaaagaggactgcaaagtgtgatctcaattttatgctctttctagtgagaagatgtccagaatagaggaacttgttacatgggatgtttatggttcaggtccttctgaattctattatgatggagatgatttgacacatgcaatctcatggtgaagagattcttaagaattatttgataccacgagctatgctctcctctagggtggatggtgacttacataaatggattgatgctggaagtcgaggtaaaacagatgagcttattaggaagaagaagagtacaaaaagtcattcagctcctccattttaccaaggcaagaagaagttctttgccacggctgagtcttcaagaaaggcagcaggaaataagaatattatgactgttcatgatgtgccactcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="-" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="53283" stop="50239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52983" g_stop="52911" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52910" i_stop="51036" i_length="1875">
            <donor d_prob="0.577" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51035" g_stop="50539" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="570" r_length="497" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="-" ref_id="SGN-E268895" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52983" e_stop="52911"/>
          <exon e_start="51035" e_stop="50539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCAATATTTTTGTATGAACTTATTTCAGTATATTTTCCTGAACAAAGAAAATGGAAACTAATCGTTGGGGTTAGCATTCACTTTATTGAATTCTTGTTTCTCACAGTGCATTTACTATATCGGTGCTTCAGTGCTTGTTTTCAGTGGTGTTCTTGTTTTCCTTGTAATGCAGATATCAATTCAAGATTTATTTCCAAAAGACCAACACATAAATTACTTAATAACATAGAGATGAGTTTTGGTAGTGCTTCTGACATTGAGTAGCGAAATAGATCTCAGATTTTTTTTTGAGACAGTAACAACAAAATAGATCTCAGATTTATCCACTGTGTTTTTTGAACCTGAACTGCTCAAGATCTTTACATGATTTGACTTTGGAGCCTTCAATGACCTCTGTGGAACTTAAGGTGAGAGTTTTTGTTGGCAATTATTATTTAAGTGTTGTGGGATTGGGAAACGAATGTGAGTCTTTGGTTTTATTTTTGTAGAATTGAGTTTCTTAGGTTTAGTTTTGTGAGAATTGGTTTGGGTTGCTTTATGTAAAATTTATTTCAAAACACCTAATCATTTTTTGGAACTTCAATATGTGTGAAATTAATATGTTAAAATTTGCCGAACATCATTATTTATTACCAATCGTATAGGATTTCAAAGTATTAAGATGGAACCCCTAACAGTTAGAAGGCCCTTGCGGCACATCTATTCCCAGAGAACACAATAATCTCCCCTTTGTTATGGGAGAATAATGCAAAACCACGTTTCTAGCTTCCTGTGGTTGCAAAAGCAAACAGACCAATTTTAAGACGGACATATGTCATACATACTTGTTTTACTGATTGGAGTATTGAATTTTGTATAACAATGTGTTTGCTGTTCTCCAAGACTGACAATTCTTCTGGTTTGAACTTAGTCTCCTGGTTCTCTTACCCAATCATTTCTGCTTCCCTTCGAATGAATTTTGCGATTTTCCTCAAAATTTACTTGATTTTCATTTATCTAGATATTTGCTACATCAATCTTCTTGGAGCCTTGATATCTTTAGGAGATGATGACATCCAGCTTTTATTGATTTTTGAGATCAGGGTGGAGAGGTGGCTCATATTGTTAGGAGTTTCACACTTGTAGGTCAATCCTGGTCCATCTAATCCACAAAAAATTCCGTTATTCAGAAAAATTGAACCCTATCAAAAAATTTAGGTTGATTTTCATTCTTCAGTTGTGGAGGTTGGAAACACAACTTTGACCTATTAAATATGCTAATACTGTTGATCTTTGGCATCCTTCTAGAGATTCAAGAGCTTTCGAGTTTTACTTTTTTATGTGTTCTTTGTTTTCAAAAGGTATCAACTTTTACCTCCTTACTGAGTTATTATCCTTTCTCTTTTTTGAAGTAATAAATGAGAGAACAATATAAATGATTTGGATCTTAGAGAAAGTGACTTCACTTGAACATATAACACTACTCTAATGCTCTGATGTGCAGCATAACTTCCTTTTTTGGCACCATTGATACGGACTGTGTTAATCTGATAAAGCTATTTTGATGTGTTTTAAAAGAATATCTTGTGGTGACTAATTGGTTCTTAATGGTACTTTTAGGATTTGCACCCTTTCCTTTTATTGTTGAGTATACTGTCGCGAATCTCTGGACTGGAAGTCACTCTGTCGGTGAAAGCATTTGTACTCGACATTTTTATGCAACATCACTTAGGATTCATTGTACTTGATATGATTTGTACATGTAGCTTTTGTCCACTCCACATTCCCTTCCCTGTATGCTGTAGCAGTCGTCCACTTGCCTCACTTAAAGATGGGGGGGGGGGGGGGATTCTGGAGGGTGGTTAGTGGAAGAGTATGCTATCATGTAGTTTATCACTATCTTCTCTTTAGCTACTTTTGAAAAAATCTAGATAGAATAAAGATTCCTCTAATGTTTACCTACAGAGGGTTATTTCCTGTTAAACATGAGGCTGCTGTCACATATGATTTTGGAAACATCGAACGTAATCTCTTGGTCCCTGCCATAAATAATTTGGAGAAAGAGGACTGCAAAGTGTGATCTCAATTTTATGCTCTTTCTAGTGAGAAGATGTCCAGAATAGAGGAACTTGTTACATGGGATGTTTATGGTTCAGGTCCTTCTGAATTCTATTATGATGGAGATGATTTGACACATGCAATCTCATGGTGAAGAGATTCTTAAGAATTATTTGATACCACGAGCTATGCTCTCCTCTAGGGTGGATGGTGACTTACATAAATGGATTGATGCTGGAAGTCGAGGTAAAACAGATGAGCTTATTAGGAAGAAGAAGAGTACAAAAAGTCATTCAGCTCCTCCATTTTACCAAGGCAAGAAGAAGTTCTTTGCCACGGCTGAGTCTTCAAGAAAGGCAGCAGGAAATAAGAATATTATGACTGTTCATGATGTGCCACTCATG</genome_strand>
        <mrna_strand>TCTTTCAATATTTTTGTATGAACTTATTTCAGTATATTTTCCTGAACAAAGAAAATGGAAACTAATCGTTGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTTATTTCCTGTTAAACATGAAGCTGCTGTCACATATGATTTTGGAAACATCGAACGTAATCTCTTGGTCCCTGCCATAAATAATTTGGAGAAAGAGGACTGCAAAGTGTGATCTCAATTTTATGCTCTTTCTAGTGAGAAGATGTCCAGAATAGAGGAACTTGTTACATGGGATGTTTATGGTTCAGGTCCTTCTGAATTCTATTATGATGGAGATGATTTGACACATGCAATCTCATGGTGAAGAGATTCTTAAGAATTATTTGATACCACGAGCTATGCTCTCCTCTAGGGTGGATGGTGACTTACATAAATGGATTGATGCTGGAAGTCGAGGTAAAACAGATGAGCTTATTAGGAAGAAGAAGAGTACAAAAAGTCATTCAGCTCCTCCATTTTACCAAGGCAAGAAGAAGTTCTTTGCCACGGCTGAGTCTTCAAGAAAGGCAGCAGGAAATAAGAATATTATGACTGTTCATGATGTGCCACTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E246730" ref_strand="+" ref_description="SGN-E246730 	[cLEF-45-H21]">
      <seq>tgagttcccttaacaaattgaatgcaagtgatggttcatataaactctcaggatatatctctggtatgttcacacagtgaaggtctttcaatatttttgtatgaacttatttcagtatattttcctgaacaaagaaaatggaaactaatcgttgggatatcaattcaagatttatttccaaaagaccaacacataaattacttaataacatagagatgagttttggtagtgcttctgacattgagtagcgaaatagatctcagatttttttttgagacagtaacaacaaaatagatctcagatttatccactgtgttttttgaacctgaactgctcaagatctttacatgatttgactttggagccttcaatgacctctgtggaacttaagagggttatttcctgttaaacatgaggctgctgtcacatatgattttggaaacatcgaacgtaatctcttggtccctgccataaataatttggagaaagaggactgcaaagtgtgatctcaattttatgctctttctagtgagaagatgtccagaatagaggaacttgttacatgggatgtttatggttcaggtccttctgaattctattatgatggagatgatttgacacatgcaatctcatggtgaagagattcttaagaattatttgataccacgagctatgctctccntctaggtggatggtgacttacataaatggattgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="-" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="53455" stop="50408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53155" g_stop="53074" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53073" i_stop="52985" i_length="89">
            <donor d_prob="0.161" d_score="1.00"/>
            <acceptor a_prob="0.668" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52984" g_stop="52911" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="156" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52910" i_stop="52808" i_length="103">
            <donor d_prob="0.577" d_score="1.00"/>
            <acceptor a_prob="0.765" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52807" g_stop="52573" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="391" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52572" i_stop="51036" i_length="1537">
            <donor d_prob="0.599" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51035" g_stop="50708" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="719" r_length="328" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="-" ref_id="SGN-E246730" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53155" e_stop="53074"/>
          <exon e_start="52984" e_stop="52911"/>
          <exon e_start="52807" e_stop="52573"/>
          <exon e_start="51035" e_stop="50708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTTCCCTTAACAAATTGAATGCAAGTGATGGTTCATATAAACTCTCAGGATATATCTCTGGTATGTTCACACAGTGAAGGTATACAGGCTCAAGTTGATGGATAGGAGATGTGATAAGTTTATCTTTTCTACACTTTATTTCCCTGACAATCACTGTTTAATTTGCAGGTCTTTCAATATTTTTGTATGAACTTATTTCAGTATATTTTCCTGAACAAAGAAAATGGAAACTAATCGTTGGGGTTAGCATTCACTTTATTGAATTCTTGTTTCTCACAGTGCATTTACTATATCGGTGCTTCAGTGCTTGTTTTCAGTGGTGTTCTTGTTTTCCTTGTAATGCAGATATCAATTCAAGATTTATTTCCAAAAGACCAACACATAAATTACTTAATAACATAGAGATGAGTTTTGGTAGTGCTTCTGACATTGAGTAGCGAAATAGATCTCAGATTTTTTTTTGAGACAGTAACAACAAAATAGATCTCAGATTTATCCACTGTGTTTTTTGAACCTGAACTGCTCAAGATCTTTACATGATTTGACTTTGGAGCCTTCAATGACCTCTGTGGAACTTAAGGTGAGAGTTTTTGTTGGCAATTATTATTTAAGTGTTGTGGGATTGGGAAACGAATGTGAGTCTTTGGTTTTATTTTTGTAGAATTGAGTTTCTTAGGTTTAGTTTTGTGAGAATTGGTTTGGGTTGCTTTATGTAAAATTTATTTCAAAACACCTAATCATTTTTTGGAACTTCAATATGTGTGAAATTAATATGTTAAAATTTGCCGAACATCATTATTTATTACCAATCGTATAGGATTTCAAAGTATTAAGATGGAACCCCTAACAGTTAGAAGGCCCTTGCGGCACATCTATTCCCAGAGAACACAATAATCTCCCCTTTGTTATGGGAGAATAATGCAAAACCACGTTTCTAGCTTCCTGTGGTTGCAAAAGCAAACAGACCAATTTTAAGACGGACATATGTCATACATACTTGTTTTACTGATTGGAGTATTGAATTTTGTATAACAATGTGTTTGCTGTTCTCCAAGACTGACAATTCTTCTGGTTTGAACTTAGTCTCCTGGTTCTCTTACCCAATCATTTCTGCTTCCCTTCGAATGAATTTTGCGATTTTCCTCAAAATTTACTTGATTTTCATTTATCTAGATATTTGCTACATCAATCTTCTTGGAGCCTTGATATCTTTAGGAGATGATGACATCCAGCTTTTATTGATTTTTGAGATCAGGGTGGAGAGGTGGCTCATATTGTTAGGAGTTTCACACTTGTAGGTCAATCCTGGTCCATCTAATCCACAAAAAATTCCGTTATTCAGAAAAATTGAACCCTATCAAAAAATTTAGGTTGATTTTCATTCTTCAGTTGTGGAGGTTGGAAACACAACTTTGACCTATTAAATATGCTAATACTGTTGATCTTTGGCATCCTTCTAGAGATTCAAGAGCTTTCGAGTTTTACTTTTTTATGTGTTCTTTGTTTTCAAAAGGTATCAACTTTTACCTCCTTACTGAGTTATTATCCTTTCTCTTTTTTGAAGTAATAAATGAGAGAACAATATAAATGATTTGGATCTTAGAGAAAGTGACTTCACTTGAACATATAACACTACTCTAATGCTCTGATGTGCAGCATAACTTCCTTTTTTGGCACCATTGATACGGACTGTGTTAATCTGATAAAGCTATTTTGATGTGTTTTAAAAGAATATCTTGTGGTGACTAATTGGTTCTTAATGGTACTTTTAGGATTTGCACCCTTTCCTTTTATTGTTGAGTATACTGTCGCGAATCTCTGGACTGGAAGTCACTCTGTCGGTGAAAGCATTTGTACTCGACATTTTTATGCAACATCACTTAGGATTCATTGTACTTGATATGATTTGTACATGTAGCTTTTGTCCACTCCACATTCCCTTCCCTGTATGCTGTAGCAGTCGTCCACTTGCCTCACTTAAAGATGGGGGGGGGGGGGGGATTCTGGAGGGTGGTTAGTGGAAGAGTATGCTATCATGTAGTTTATCACTATCTTCTCTTTAGCTACTTTTGAAAAAATCTAGATAGAATAAAGATTCCTCTAATGTTTACCTACAGAGGGTTATTTCCTGTTAAACATGAGGCTGCTGTCACATATGATTTTGGAAACATCGAACGTAATCTCTTGGTCCCTGCCATAAATAATTTGGAGAAAGAGGACTGCAAAGTGTGATCTCAATTTTATGCTCTTTCTAGTGAGAAGATGTCCAGAATAGAGGAACTTGTTACATGGGATGTTTATGGTTCAGGTCCTTCTGAATTCTATTATGATGGAGATGATTTGACACATGCAATCTCATGGTGAAGAGATTCTTAAGAATTATTTGATACCACGAGCTATGCTCTCC-TCTAGGGTGGATGGTGACTTACATAAATGGATTGATGC</genome_strand>
        <mrna_strand>TGAGTTCCCTTAACAAATTGAATGCAAGTGATGGTTCATATAAACTCTCAGGATATATCTCTGGTATGTTCACACAGTGAAG.........................................................................................GTCTTTCAATATTTTTGTATGAACTTATTTCAGTATATTTTCCTGAACAAAGAAAATGGAAACTAATCGTTGGG.......................................................................................................ATATCAATTCAAGATTTATTTCCAAAAGACCAACACATAAATTACTTAATAACATAGAGATGAGTTTTGGTAGTGCTTCTGACATTGAGTAGCGAAATAGATCTCAGATTTTTTTTTGAGACAGTAACAACAAAATAGATCTCAGATTTATCCACTGTGTTTTTTGAACCTGAACTGCTCAAGATCTTTACATGATTTGACTTTGGAGCCTTCAATGACCTCTGTGGAACTTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTTATTTCCTGTTAAACATGAGGCTGCTGTCACATATGATTTTGGAAACATCGAACGTAATCTCTTGGTCCCTGCCATAAATAATTTGGAGAAAGAGGACTGCAAAGTGTGATCTCAATTTTATGCTCTTTCTAGTGAGAAGATGTCCAGAATAGAGGAACTTGTTACATGGGATGTTTATGGTTCAGGTCCTTCTGAATTCTATTATGATGGAGATGATTTGACACATGCAATCTCATGGTGAAGAGATTCTTAAGAATTATTTGATACCACGAGCTATGCTCTCCNTCTA-GGTGGATGGTGACTTACATAAATGGATTGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E378783" ref_strand="+" ref_description="SGN-E378783 	[TUS-34-L24]">
      <seq>aagcctgatacatgatggatcatctttgtttattccagataatgggttcgggtgtcatctgagttcccttaacaaattgaatgcaagtgatggttcatataaactctcaggatatatctctggtatgttcacacagtgaaggtctttcaatatttttgtatgaacttatttcagtatattttcctgaacaaagaaaatggaaactaatcgttgggatatcaattcaagatttatttccaaaagaccaacacataaattacttaataacatagagatgagttttggtagtgcttctgacattgagtagcgaaatagatctcagatttttttttgagacagtaacaacaaaatagatctcagatttatccactgtgttttttgaacctgaactgctcaagatctttacatgatttgactttggagccttcaatgacctctgtggaacttaaggtccttctgaattctattatgatggagatgatttgacacatgcaatctcatggtgaagagattcttaggatttatttgataccacgagctatgctctcctctagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="-" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="53624" stop="50440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53324" g_stop="53283" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53282" i_stop="53173" i_length="110">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53172" g_stop="53074" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="141" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53073" i_stop="52985" i_length="89">
            <donor d_prob="0.161" d_score="1.00"/>
            <acceptor a_prob="0.668" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52984" g_stop="52911" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="215" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52910" i_stop="52808" i_length="103">
            <donor d_prob="0.577" d_score="1.00"/>
            <acceptor a_prob="0.765" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52807" g_stop="52573" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="450" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52572" i_stop="50845" i_length="1728">
            <donor d_prob="0.599" d_score="1.00"/>
            <acceptor a_prob="0.765" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50844" g_stop="50740" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="555" r_length="105" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="-" ref_id="SGN-E378783" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53324" e_stop="53283"/>
          <exon e_start="53172" e_stop="53074"/>
          <exon e_start="52984" e_stop="52911"/>
          <exon e_start="52807" e_stop="52573"/>
          <exon e_start="50844" e_stop="50740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCTGATACATGATGGATCATCTTTGTTTATTCCAGATAAGTTGAGGATATTTCCTGTCTTATTCTCTTCAGATTTTGTTCATTTGCACGCAATGAAGATGACCTTCTTTGCACACGTGCTTGTCCTTCTCTGTTTCTGCTGTTGTCCAGTGGGTTCGGGTGTCATCTGAGTTCCCTTAACAAATTGAATGCAAGTGATGGTTCATATAAACTCTCAGGATATATCTCTGGTATGTTCACACAGTGAAGGTATACAGGCTCAAGTTGATGGATAGGAGATGTGATAAGTTTATCTTTTCTACACTTTATTTCCCTGACAATCACTGTTTAATTTGCAGGTCTTTCAATATTTTTGTATGAACTTATTTCAGTATATTTTCCTGAACAAAGAAAATGGAAACTAATCGTTGGGGTTAGCATTCACTTTATTGAATTCTTGTTTCTCACAGTGCATTTACTATATCGGTGCTTCAGTGCTTGTTTTCAGTGGTGTTCTTGTTTTCCTTGTAATGCAGATATCAATTCAAGATTTATTTCCAAAAGACCAACACATAAATTACTTAATAACATAGAGATGAGTTTTGGTAGTGCTTCTGACATTGAGTAGCGAAATAGATCTCAGATTTTTTTTTGAGACAGTAACAACAAAATAGATCTCAGATTTATCCACTGTGTTTTTTGAACCTGAACTGCTCAAGATCTTTACATGATTTGACTTTGGAGCCTTCAATGACCTCTGTGGAACTTAAGGTGAGAGTTTTTGTTGGCAATTATTATTTAAGTGTTGTGGGATTGGGAAACGAATGTGAGTCTTTGGTTTTATTTTTGTAGAATTGAGTTTCTTAGGTTTAGTTTTGTGAGAATTGGTTTGGGTTGCTTTATGTAAAATTTATTTCAAAACACCTAATCATTTTTTGGAACTTCAATATGTGTGAAATTAATATGTTAAAATTTGCCGAACATCATTATTTATTACCAATCGTATAGGATTTCAAAGTATTAAGATGGAACCCCTAACAGTTAGAAGGCCCTTGCGGCACATCTATTCCCAGAGAACACAATAATCTCCCCTTTGTTATGGGAGAATAATGCAAAACCACGTTTCTAGCTTCCTGTGGTTGCAAAAGCAAACAGACCAATTTTAAGACGGACATATGTCATACATACTTGTTTTACTGATTGGAGTATTGAATTTTGTATAACAATGTGTTTGCTGTTCTCCAAGACTGACAATTCTTCTGGTTTGAACTTAGTCTCCTGGTTCTCTTACCCAATCATTTCTGCTTCCCTTCGAATGAATTTTGCGATTTTCCTCAAAATTTACTTGATTTTCATTTATCTAGATATTTGCTACATCAATCTTCTTGGAGCCTTGATATCTTTAGGAGATGATGACATCCAGCTTTTATTGATTTTTGAGATCAGGGTGGAGAGGTGGCTCATATTGTTAGGAGTTTCACACTTGTAGGTCAATCCTGGTCCATCTAATCCACAAAAAATTCCGTTATTCAGAAAAATTGAACCCTATCAAAAAATTTAGGTTGATTTTCATTCTTCAGTTGTGGAGGTTGGAAACACAACTTTGACCTATTAAATATGCTAATACTGTTGATCTTTGGCATCCTTCTAGAGATTCAAGAGCTTTCGAGTTTTACTTTTTTATGTGTTCTTTGTTTTCAAAAGGTATCAACTTTTACCTCCTTACTGAGTTATTATCCTTTCTCTTTTTTGAAGTAATAAATGAGAGAACAATATAAATGATTTGGATCTTAGAGAAAGTGACTTCACTTGAACATATAACACTACTCTAATGCTCTGATGTGCAGCATAACTTCCTTTTTTGGCACCATTGATACGGACTGTGTTAATCTGATAAAGCTATTTTGATGTGTTTTAAAAGAATATCTTGTGGTGACTAATTGGTTCTTAATGGTACTTTTAGGATTTGCACCCTTTCCTTTTATTGTTGAGTATACTGTCGCGAATCTCTGGACTGGAAGTCACTCTGTCGGTGAAAGCATTTGTACTCGACATTTTTATGCAACATCACTTAGGATTCATTGTACTTGATATGATTTGTACATGTAGCTTTTGTCCACTCCACATTCCCTTCCCTGTATGCTGTAGCAGTCGTCCACTTGCCTCACTTAAAGATGGGGGGGGGGGGGGGATTCTGGAGGGTGGTTAGTGGAAGAGTATGCTATCATGTAGTTTATCACTATCTTCTCTTTAGCTACTTTTGAAAAAATCTAGATAGAATAAAGATTCCTCTAATGTTTACCTACAGAGGGTTATTTCCTGTTAAACATGAGGCTGCTGTCACATATGATTTTGGAAACATCGAACGTAATCTCTTGGTCCCTGCCATAAATAATTTGGAGAAAGAGGACTGCAAAGTGTGATCTCAATTTTATGCTCTTTCTAGTGAGAAGATGTCCAGAATAGAGGAACTTGTTACATGGGATGTTTATGGTTCAGGTCCTTCTGAATTCTATTATGATGGAGATGATTTGACACATGCAATCTCATGGTGAAGAGATTCTTAAGAATTATTTGATACCACGAGCTATGCTCTCCTCTAGG</genome_strand>
        <mrna_strand>AAGCCTGATACATGATGGATCATCTTTGTTTATTCCAGATAA..............................................................................................................TGGGTTCGGGTGTCATCTGAGTTCCCTTAACAAATTGAATGCAAGTGATGGTTCATATAAACTCTCAGGATATATCTCTGGTATGTTCACACAGTGAAG.........................................................................................GTCTTTCAATATTTTTGTATGAACTTATTTCAGTATATTTTCCTGAACAAAGAAAATGGAAACTAATCGTTGGG.......................................................................................................ATATCAATTCAAGATTTATTTCCAAAAGACCAACACATAAATTACTTAATAACATAGAGATGAGTTTTGGTAGTGCTTCTGACATTGAGTAGCGAAATAGATCTCAGATTTTTTTTTGAGACAGTAACAACAAAATAGATCTCAGATTTATCCACTGTGTTTTTTGAACCTGAACTGCTCAAGATCTTTACATGATTTGACTTTGGAGCCTTCAATGACCTCTGTGGAACTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTCTGAATTCTATTATGATGGAGATGATTTGACACATGCAATCTCATGGTGAAGAGATTCTTAGGATTTATTTGATACCACGAGCTATGCTCTCCTCTAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E396124" ref_strand="+" ref_description="SGN-E396124 	[TUS-19-M19]">
      <seq>gttcgttgcacagaagcctgatacatgatggatcatctttgtttattccagataatgggttcgggtgtcatctgagttcccttaacaaattgaatgcaagtgatggttcatataaactctcaggatatatctctggtatgttcacacagtgaaggtctttcaatatttttgtatgaacttatttcagtatattttcctgaacaaagaaaatggaaactaatcgttgggatatcaattcaagatttatttccaaaagaccaacacataaattacttaataacatagagatgagttttggtagtgcttctgacattgagtagcgaaatagatctcagatttttttttgagacagtaacaacaaaatagatctcagatttatccactgtgttttttgaacctgaactgctcaagatctttacatgatttgactttggagccttcaatgacctctgtggaacttaaggtccttctgaattctattatgatggagatgatttgacacatgcaatctcatggtgaaaagattcttaagaattatttgatacctcgaagctatgctctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="-" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="53637" stop="50445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53337" g_stop="53283" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53282" i_stop="53173" i_length="110">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53172" g_stop="53074" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="154" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53073" i_stop="52985" i_length="89">
            <donor d_prob="0.161" d_score="1.00"/>
            <acceptor a_prob="0.668" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52984" g_stop="52911" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="228" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52910" i_stop="52808" i_length="103">
            <donor d_prob="0.577" d_score="1.00"/>
            <acceptor a_prob="0.765" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52807" g_stop="52573" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="463" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="52572" i_stop="50845" i_length="1728">
            <donor d_prob="0.599" d_score="1.00"/>
            <acceptor a_prob="0.765" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50844" g_stop="50745" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="564" r_length="101" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="-" ref_id="SGN-E396124" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53337" e_stop="53283"/>
          <exon e_start="53172" e_stop="53074"/>
          <exon e_start="52984" e_stop="52911"/>
          <exon e_start="52807" e_stop="52573"/>
          <exon e_start="50844" e_stop="50745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGTTGCACAGAAGCCTGATACATGATGGATCATCTTTGTTTATTCCAGATAAGTTGAGGATATTTCCTGTCTTATTCTCTTCAGATTTTGTTCATTTGCACGCAATGAAGATGACCTTCTTTGCACACGTGCTTGTCCTTCTCTGTTTCTGCTGTTGTCCAGTGGGTTCGGGTGTCATCTGAGTTCCCTTAACAAATTGAATGCAAGTGATGGTTCATATAAACTCTCAGGATATATCTCTGGTATGTTCACACAGTGAAGGTATACAGGCTCAAGTTGATGGATAGGAGATGTGATAAGTTTATCTTTTCTACACTTTATTTCCCTGACAATCACTGTTTAATTTGCAGGTCTTTCAATATTTTTGTATGAACTTATTTCAGTATATTTTCCTGAACAAAGAAAATGGAAACTAATCGTTGGGGTTAGCATTCACTTTATTGAATTCTTGTTTCTCACAGTGCATTTACTATATCGGTGCTTCAGTGCTTGTTTTCAGTGGTGTTCTTGTTTTCCTTGTAATGCAGATATCAATTCAAGATTTATTTCCAAAAGACCAACACATAAATTACTTAATAACATAGAGATGAGTTTTGGTAGTGCTTCTGACATTGAGTAGCGAAATAGATCTCAGATTTTTTTTTGAGACAGTAACAACAAAATAGATCTCAGATTTATCCACTGTGTTTTTTGAACCTGAACTGCTCAAGATCTTTACATGATTTGACTTTGGAGCCTTCAATGACCTCTGTGGAACTTAAGGTGAGAGTTTTTGTTGGCAATTATTATTTAAGTGTTGTGGGATTGGGAAACGAATGTGAGTCTTTGGTTTTATTTTTGTAGAATTGAGTTTCTTAGGTTTAGTTTTGTGAGAATTGGTTTGGGTTGCTTTATGTAAAATTTATTTCAAAACACCTAATCATTTTTTGGAACTTCAATATGTGTGAAATTAATATGTTAAAATTTGCCGAACATCATTATTTATTACCAATCGTATAGGATTTCAAAGTATTAAGATGGAACCCCTAACAGTTAGAAGGCCCTTGCGGCACATCTATTCCCAGAGAACACAATAATCTCCCCTTTGTTATGGGAGAATAATGCAAAACCACGTTTCTAGCTTCCTGTGGTTGCAAAAGCAAACAGACCAATTTTAAGACGGACATATGTCATACATACTTGTTTTACTGATTGGAGTATTGAATTTTGTATAACAATGTGTTTGCTGTTCTCCAAGACTGACAATTCTTCTGGTTTGAACTTAGTCTCCTGGTTCTCTTACCCAATCATTTCTGCTTCCCTTCGAATGAATTTTGCGATTTTCCTCAAAATTTACTTGATTTTCATTTATCTAGATATTTGCTACATCAATCTTCTTGGAGCCTTGATATCTTTAGGAGATGATGACATCCAGCTTTTATTGATTTTTGAGATCAGGGTGGAGAGGTGGCTCATATTGTTAGGAGTTTCACACTTGTAGGTCAATCCTGGTCCATCTAATCCACAAAAAATTCCGTTATTCAGAAAAATTGAACCCTATCAAAAAATTTAGGTTGATTTTCATTCTTCAGTTGTGGAGGTTGGAAACACAACTTTGACCTATTAAATATGCTAATACTGTTGATCTTTGGCATCCTTCTAGAGATTCAAGAGCTTTCGAGTTTTACTTTTTTATGTGTTCTTTGTTTTCAAAAGGTATCAACTTTTACCTCCTTACTGAGTTATTATCCTTTCTCTTTTTTGAAGTAATAAATGAGAGAACAATATAAATGATTTGGATCTTAGAGAAAGTGACTTCACTTGAACATATAACACTACTCTAATGCTCTGATGTGCAGCATAACTTCCTTTTTTGGCACCATTGATACGGACTGTGTTAATCTGATAAAGCTATTTTGATGTGTTTTAAAAGAATATCTTGTGGTGACTAATTGGTTCTTAATGGTACTTTTAGGATTTGCACCCTTTCCTTTTATTGTTGAGTATACTGTCGCGAATCTCTGGACTGGAAGTCACTCTGTCGGTGAAAGCATTTGTACTCGACATTTTTATGCAACATCACTTAGGATTCATTGTACTTGATATGATTTGTACATGTAGCTTTTGTCCACTCCACATTCCCTTCCCTGTATGCTGTAGCAGTCGTCCACTTGCCTCACTTAAAGATGGGGGGGGGGGGGGGATTCTGGAGGGTGGTTAGTGGAAGAGTATGCTATCATGTAGTTTATCACTATCTTCTCTTTAGCTACTTTTGAAAAAATCTAGATAGAATAAAGATTCCTCTAATGTTTACCTACAGAGGGTTATTTCCTGTTAAACATGAGGCTGCTGTCACATATGATTTTGGAAACATCGAACGTAATCTCTTGGTCCCTGCCATAAATAATTTGGAGAAAGAGGACTGCAAAGTGTGATCTCAATTTTATGCTCTTTCTAGTGAGAAGATGTCCAGAATAGAGGAACTTGTTACATGGGATGTTTATGGTTCAGGTCCTTCTGAATTCTATTATGATGGAGATGATTTGACACATGCAATCTCATGGTGAAGAGATTCTTAAGAATTATTTGATACCACG-AGCTATGCTCTCCT</genome_strand>
        <mrna_strand>GTTCGTTGCACAGAAGCCTGATACATGATGGATCATCTTTGTTTATTCCAGATAA..............................................................................................................TGGGTTCGGGTGTCATCTGAGTTCCCTTAACAAATTGAATGCAAGTGATGGTTCATATAAACTCTCAGGATATATCTCTGGTATGTTCACACAGTGAAG.........................................................................................GTCTTTCAATATTTTTGTATGAACTTATTTCAGTATATTTTCCTGAACAAAGAAAATGGAAACTAATCGTTGGG.......................................................................................................ATATCAATTCAAGATTTATTTCCAAAAGACCAACACATAAATTACTTAATAACATAGAGATGAGTTTTGGTAGTGCTTCTGACATTGAGTAGCGAAATAGATCTCAGATTTTTTTTTGAGACAGTAACAACAAAATAGATCTCAGATTTATCCACTGTGTTTTTTGAACCTGAACTGCTCAAGATCTTTACATGATTTGACTTTGGAGCCTTCAATGACCTCTGTGGAACTTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTCTGAATTCTATTATGATGGAGATGATTTGACACATGCAATCTCATGGTGAAAAGATTCTTAAGAATTATTTGATACCTCGAAGCTATGCTCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E391823" ref_strand="+" ref_description="SGN-E391823 	[TUS-24-L19]">
      <seq>ctgagttcccttaacaaattgaatgcaagtgatggttcatataaactctcaggatatatctctggtatgttcacacagtgaaggtctttcaatatttttgtatgaacttatttcagtatattttcctgaacaaagaaaatggaaactaatcgttgggatatcaattcaagatttatttccaaaagaccaacacataaattacttaataacatagagatgagttttggtagtgcttctgacattgagtagcgaaatagatctcagatttttttttgagacagtaacaacaaaatagatctcagatttatccactgtgttttttgaacctgaactgctcaagatctttacatgatttgactttggagccttcaatgacctctgtggaacttaagagggttatttcctgttaaacatgaggctgctgtcacatatgattttggaaacatcgaacgtaatctcttggtccctgccataaataatttggagaaagaggactgcaaagtgtgatctcaattttatgctctttctagtgaaaagatgtccagaatagaggaacttgttacatgggatgtttatggttcaggtccttctgaattctattatgatggaaataatttaacacatgcaatctcatggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="-" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="53456" stop="50490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53156" g_stop="53074" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53073" i_stop="52985" i_length="89">
            <donor d_prob="0.161" d_score="1.00"/>
            <acceptor a_prob="0.668" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52984" g_stop="52911" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="157" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52910" i_stop="52808" i_length="103">
            <donor d_prob="0.577" d_score="1.00"/>
            <acceptor a_prob="0.765" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52807" g_stop="52573" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="392" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52572" i_stop="51036" i_length="1537">
            <donor d_prob="0.599" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51035" g_stop="50790" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="638" r_length="246" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="-" ref_id="SGN-E391823" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53156" e_stop="53074"/>
          <exon e_start="52984" e_stop="52911"/>
          <exon e_start="52807" e_stop="52573"/>
          <exon e_start="51035" e_stop="50790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGTTCCCTTAACAAATTGAATGCAAGTGATGGTTCATATAAACTCTCAGGATATATCTCTGGTATGTTCACACAGTGAAGGTATACAGGCTCAAGTTGATGGATAGGAGATGTGATAAGTTTATCTTTTCTACACTTTATTTCCCTGACAATCACTGTTTAATTTGCAGGTCTTTCAATATTTTTGTATGAACTTATTTCAGTATATTTTCCTGAACAAAGAAAATGGAAACTAATCGTTGGGGTTAGCATTCACTTTATTGAATTCTTGTTTCTCACAGTGCATTTACTATATCGGTGCTTCAGTGCTTGTTTTCAGTGGTGTTCTTGTTTTCCTTGTAATGCAGATATCAATTCAAGATTTATTTCCAAAAGACCAACACATAAATTACTTAATAACATAGAGATGAGTTTTGGTAGTGCTTCTGACATTGAGTAGCGAAATAGATCTCAGATTTTTTTTTGAGACAGTAACAACAAAATAGATCTCAGATTTATCCACTGTGTTTTTTGAACCTGAACTGCTCAAGATCTTTACATGATTTGACTTTGGAGCCTTCAATGACCTCTGTGGAACTTAAGGTGAGAGTTTTTGTTGGCAATTATTATTTAAGTGTTGTGGGATTGGGAAACGAATGTGAGTCTTTGGTTTTATTTTTGTAGAATTGAGTTTCTTAGGTTTAGTTTTGTGAGAATTGGTTTGGGTTGCTTTATGTAAAATTTATTTCAAAACACCTAATCATTTTTTGGAACTTCAATATGTGTGAAATTAATATGTTAAAATTTGCCGAACATCATTATTTATTACCAATCGTATAGGATTTCAAAGTATTAAGATGGAACCCCTAACAGTTAGAAGGCCCTTGCGGCACATCTATTCCCAGAGAACACAATAATCTCCCCTTTGTTATGGGAGAATAATGCAAAACCACGTTTCTAGCTTCCTGTGGTTGCAAAAGCAAACAGACCAATTTTAAGACGGACATATGTCATACATACTTGTTTTACTGATTGGAGTATTGAATTTTGTATAACAATGTGTTTGCTGTTCTCCAAGACTGACAATTCTTCTGGTTTGAACTTAGTCTCCTGGTTCTCTTACCCAATCATTTCTGCTTCCCTTCGAATGAATTTTGCGATTTTCCTCAAAATTTACTTGATTTTCATTTATCTAGATATTTGCTACATCAATCTTCTTGGAGCCTTGATATCTTTAGGAGATGATGACATCCAGCTTTTATTGATTTTTGAGATCAGGGTGGAGAGGTGGCTCATATTGTTAGGAGTTTCACACTTGTAGGTCAATCCTGGTCCATCTAATCCACAAAAAATTCCGTTATTCAGAAAAATTGAACCCTATCAAAAAATTTAGGTTGATTTTCATTCTTCAGTTGTGGAGGTTGGAAACACAACTTTGACCTATTAAATATGCTAATACTGTTGATCTTTGGCATCCTTCTAGAGATTCAAGAGCTTTCGAGTTTTACTTTTTTATGTGTTCTTTGTTTTCAAAAGGTATCAACTTTTACCTCCTTACTGAGTTATTATCCTTTCTCTTTTTTGAAGTAATAAATGAGAGAACAATATAAATGATTTGGATCTTAGAGAAAGTGACTTCACTTGAACATATAACACTACTCTAATGCTCTGATGTGCAGCATAACTTCCTTTTTTGGCACCATTGATACGGACTGTGTTAATCTGATAAAGCTATTTTGATGTGTTTTAAAAGAATATCTTGTGGTGACTAATTGGTTCTTAATGGTACTTTTAGGATTTGCACCCTTTCCTTTTATTGTTGAGTATACTGTCGCGAATCTCTGGACTGGAAGTCACTCTGTCGGTGAAAGCATTTGTACTCGACATTTTTATGCAACATCACTTAGGATTCATTGTACTTGATATGATTTGTACATGTAGCTTTTGTCCACTCCACATTCCCTTCCCTGTATGCTGTAGCAGTCGTCCACTTGCCTCACTTAAAGATGGGGGGGGGGGGGGGATTCTGGAGGGTGGTTAGTGGAAGAGTATGCTATCATGTAGTTTATCACTATCTTCTCTTTAGCTACTTTTGAAAAAATCTAGATAGAATAAAGATTCCTCTAATGTTTACCTACAGAGGGTTATTTCCTGTTAAACATGAGGCTGCTGTCACATATGATTTTGGAAACATCGAACGTAATCTCTTGGTCCCTGCCATAAATAATTTGGAGAAAGAGGACTGCAAAGTGTGATCTCAATTTTATGCTCTTTCTAGTGAGAAGATGTCCAGAATAGAGGAACTTGTTACATGGGATGTTTATGGTTCAGGTCCTTCTGAATTCTATTATGATGGAGATGATTTGACACATGCAATCTCATGGTG</genome_strand>
        <mrna_strand>CTGAGTTCCCTTAACAAATTGAATGCAAGTGATGGTTCATATAAACTCTCAGGATATATCTCTGGTATGTTCACACAGTGAAG.........................................................................................GTCTTTCAATATTTTTGTATGAACTTATTTCAGTATATTTTCCTGAACAAAGAAAATGGAAACTAATCGTTGGG.......................................................................................................ATATCAATTCAAGATTTATTTCCAAAAGACCAACACATAAATTACTTAATAACATAGAGATGAGTTTTGGTAGTGCTTCTGACATTGAGTAGCGAAATAGATCTCAGATTTTTTTTTGAGACAGTAACAACAAAATAGATCTCAGATTTATCCACTGTGTTTTTTGAACCTGAACTGCTCAAGATCTTTACATGATTTGACTTTGGAGCCTTCAATGACCTCTGTGGAACTTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTTATTTCCTGTTAAACATGAGGCTGCTGTCACATATGATTTTGGAAACATCGAACGTAATCTCTTGGTCCCTGCCATAAATAATTTGGAGAAAGAGGACTGCAAAGTGTGATCTCAATTTTATGCTCTTTCTAGTGAAAAGATGTCCAGAATAGAGGAACTTGTTACATGGGATGTTTATGGTTCAGGTCCTTCTGAATTCTATTATGATGGAAATAATTTAACACATGCAATCTCATGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E207460" ref_strand="+" ref_description="SGN-E207460 	[cLEC-36-I5]">
      <seq>tttcctgtcttattctcttcagattttgttcatttgcacgcaatgaagatgaccttctttgcacacgtgcttgtccttctctgtttctgctgttgtccagtgggttcgggtgtcatctgagttcccttaacaaattgaatgcaagtgatggttcatataaactctcaggatatatctctggtctttcaatatttttgtatgaacttatttcagtatattttcctgaacaaagaaaatggaaactaatcgttgggatatcaattcaagatttatttccaaaagaccaacacataaattacttaataacatagagatgagttttggtagtgcttctgacattgagtagcgaaatagatctcagatttttttttgagacagtaacaacaaaatagatctcagatttatccactgtgttttttgaacctgaactgctcaagatctttacatgatttgactttggagccttcaatgacctctgtggaacttaagagggttatttcctgttaaacatgaggctgctgtcacatatgattttggaaacatcgaacgtaatctcttggtccctgccataaataatttggagaaagaggactgcaaagtgtgatctcaattttatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="-" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="53572" stop="50605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53272" g_stop="53093" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53092" i_stop="52985" i_length="108">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.668" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52984" g_stop="52911" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="254" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52910" i_stop="52808" i_length="103">
            <donor d_prob="0.577" d_score="1.00"/>
            <acceptor a_prob="0.765" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52807" g_stop="52573" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="489" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52572" i_stop="51036" i_length="1537">
            <donor d_prob="0.599" d_score="1.00"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51035" g_stop="50905" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="620" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="-" ref_id="SGN-E207460" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53272" e_stop="53093"/>
          <exon e_start="52984" e_stop="52911"/>
          <exon e_start="52807" e_stop="52573"/>
          <exon e_start="51035" e_stop="50905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCTGTCTTATTCTCTTCAGATTTTGTTCATTTGCACGCAATGAAGATGACCTTCTTTGCACACGTGCTTGTCCTTCTCTGTTTCTGCTGTTGTCCAGTGGGTTCGGGTGTCATCTGAGTTCCCTTAACAAATTGAATGCAAGTGATGGTTCATATAAACTCTCAGGATATATCTCTGGTATGTTCACACAGTGAAGGTATACAGGCTCAAGTTGATGGATAGGAGATGTGATAAGTTTATCTTTTCTACACTTTATTTCCCTGACAATCACTGTTTAATTTGCAGGTCTTTCAATATTTTTGTATGAACTTATTTCAGTATATTTTCCTGAACAAAGAAAATGGAAACTAATCGTTGGGGTTAGCATTCACTTTATTGAATTCTTGTTTCTCACAGTGCATTTACTATATCGGTGCTTCAGTGCTTGTTTTCAGTGGTGTTCTTGTTTTCCTTGTAATGCAGATATCAATTCAAGATTTATTTCCAAAAGACCAACACATAAATTACTTAATAACATAGAGATGAGTTTTGGTAGTGCTTCTGACATTGAGTAGCGAAATAGATCTCAGATTTTTTTTTGAGACAGTAACAACAAAATAGATCTCAGATTTATCCACTGTGTTTTTTGAACCTGAACTGCTCAAGATCTTTACATGATTTGACTTTGGAGCCTTCAATGACCTCTGTGGAACTTAAGGTGAGAGTTTTTGTTGGCAATTATTATTTAAGTGTTGTGGGATTGGGAAACGAATGTGAGTCTTTGGTTTTATTTTTGTAGAATTGAGTTTCTTAGGTTTAGTTTTGTGAGAATTGGTTTGGGTTGCTTTATGTAAAATTTATTTCAAAACACCTAATCATTTTTTGGAACTTCAATATGTGTGAAATTAATATGTTAAAATTTGCCGAACATCATTATTTATTACCAATCGTATAGGATTTCAAAGTATTAAGATGGAACCCCTAACAGTTAGAAGGCCCTTGCGGCACATCTATTCCCAGAGAACACAATAATCTCCCCTTTGTTATGGGAGAATAATGCAAAACCACGTTTCTAGCTTCCTGTGGTTGCAAAAGCAAACAGACCAATTTTAAGACGGACATATGTCATACATACTTGTTTTACTGATTGGAGTATTGAATTTTGTATAACAATGTGTTTGCTGTTCTCCAAGACTGACAATTCTTCTGGTTTGAACTTAGTCTCCTGGTTCTCTTACCCAATCATTTCTGCTTCCCTTCGAATGAATTTTGCGATTTTCCTCAAAATTTACTTGATTTTCATTTATCTAGATATTTGCTACATCAATCTTCTTGGAGCCTTGATATCTTTAGGAGATGATGACATCCAGCTTTTATTGATTTTTGAGATCAGGGTGGAGAGGTGGCTCATATTGTTAGGAGTTTCACACTTGTAGGTCAATCCTGGTCCATCTAATCCACAAAAAATTCCGTTATTCAGAAAAATTGAACCCTATCAAAAAATTTAGGTTGATTTTCATTCTTCAGTTGTGGAGGTTGGAAACACAACTTTGACCTATTAAATATGCTAATACTGTTGATCTTTGGCATCCTTCTAGAGATTCAAGAGCTTTCGAGTTTTACTTTTTTATGTGTTCTTTGTTTTCAAAAGGTATCAACTTTTACCTCCTTACTGAGTTATTATCCTTTCTCTTTTTTGAAGTAATAAATGAGAGAACAATATAAATGATTTGGATCTTAGAGAAAGTGACTTCACTTGAACATATAACACTACTCTAATGCTCTGATGTGCAGCATAACTTCCTTTTTTGGCACCATTGATACGGACTGTGTTAATCTGATAAAGCTATTTTGATGTGTTTTAAAAGAATATCTTGTGGTGACTAATTGGTTCTTAATGGTACTTTTAGGATTTGCACCCTTTCCTTTTATTGTTGAGTATACTGTCGCGAATCTCTGGACTGGAAGTCACTCTGTCGGTGAAAGCATTTGTACTCGACATTTTTATGCAACATCACTTAGGATTCATTGTACTTGATATGATTTGTACATGTAGCTTTTGTCCACTCCACATTCCCTTCCCTGTATGCTGTAGCAGTCGTCCACTTGCCTCACTTAAAGATGGGGGGGGGGGGGGGATTCTGGAGGGTGGTTAGTGGAAGAGTATGCTATCATGTAGTTTATCACTATCTTCTCTTTAGCTACTTTTGAAAAAATCTAGATAGAATAAAGATTCCTCTAATGTTTACCTACAGAGGGTTATTTCCTGTTAAACATGAGGCTGCTGTCACATATGATTTTGGAAACATCGAACGTAATCTCTTGGTCCCTGCCATAAATAATTTGGAGAAAGAGGACTGCAAAGTGTGATCTCAATTTTATGCTC</genome_strand>
        <mrna_strand>TTTCCTGTCTTATTCTCTTCAGATTTTGTTCATTTGCACGCAATGAAGATGACCTTCTTTGCACACGTGCTTGTCCTTCTCTGTTTCTGCTGTTGTCCAGTGGGTTCGGGTGTCATCTGAGTTCCCTTAACAAATTGAATGCAAGTGATGGTTCATATAAACTCTCAGGATATATCTCTG............................................................................................................GTCTTTCAATATTTTTGTATGAACTTATTTCAGTATATTTTCCTGAACAAAGAAAATGGAAACTAATCGTTGGG.......................................................................................................ATATCAATTCAAGATTTATTTCCAAAAGACCAACACATAAATTACTTAATAACATAGAGATGAGTTTTGGTAGTGCTTCTGACATTGAGTAGCGAAATAGATCTCAGATTTTTTTTTGAGACAGTAACAACAAAATAGATCTCAGATTTATCCACTGTGTTTTTTGAACCTGAACTGCTCAAGATCTTTACATGATTTGACTTTGGAGCCTTCAATGACCTCTGTGGAACTTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTTATTTCCTGTTAAACATGAGGCTGCTGTCACATATGATTTTGGAAACATCGAACGTAATCTCTTGGTCCCTGCCATAAATAATTTGGAGAAAGAGGACTGCAAAGTGTGATCTCAATTTTATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E375492" ref_strand="+" ref_description="SGN-E375492 	[TUS-34-L24]">
      <seq>ttcgttgcacagaagcctgatacatgatggatcatctttgtttattccagataatgggttcgggtgtcatctgagttcccttaacaaattgaatgcaagtgatggttcatataaactctcaggatatatctctggtatgttcacacagtgaaggtctttcaatatttttgtatgaacttatttcagtatattttcctgaacaaagaaaatggaaactaatcgttgggatatcaattcaagatttatttccaaaagaccaacacataaattacttaataacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="-" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="53636" stop="52453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53336" g_stop="53283" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53282" i_stop="53173" i_length="110">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53172" g_stop="53074" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="153" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53073" i_stop="52985" i_length="89">
            <donor d_prob="0.161" d_score="1.00"/>
            <acceptor a_prob="0.668" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52984" g_stop="52911" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="227" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52910" i_stop="52808" i_length="103">
            <donor d_prob="0.577" d_score="1.00"/>
            <acceptor a_prob="0.765" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52807" g_stop="52753" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="282" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="-" ref_id="SGN-E375492" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>282</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53336" e_stop="53283"/>
          <exon e_start="53172" e_stop="53074"/>
          <exon e_start="52984" e_stop="52911"/>
          <exon e_start="52807" e_stop="52753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTTGCACAGAAGCCTGATACATGATGGATCATCTTTGTTTATTCCAGATAAGTTGAGGATATTTCCTGTCTTATTCTCTTCAGATTTTGTTCATTTGCACGCAATGAAGATGACCTTCTTTGCACACGTGCTTGTCCTTCTCTGTTTCTGCTGTTGTCCAGTGGGTTCGGGTGTCATCTGAGTTCCCTTAACAAATTGAATGCAAGTGATGGTTCATATAAACTCTCAGGATATATCTCTGGTATGTTCACACAGTGAAGGTATACAGGCTCAAGTTGATGGATAGGAGATGTGATAAGTTTATCTTTTCTACACTTTATTTCCCTGACAATCACTGTTTAATTTGCAGGTCTTTCAATATTTTTGTATGAACTTATTTCAGTATATTTTCCTGAACAAAGAAAATGGAAACTAATCGTTGGGGTTAGCATTCACTTTATTGAATTCTTGTTTCTCACAGTGCATTTACTATATCGGTGCTTCAGTGCTTGTTTTCAGTGGTGTTCTTGTTTTCCTTGTAATGCAGATATCAATTCAAGATTTATTTCCAAAAGACCAACACATAAATTACTTAATAACAT</genome_strand>
        <mrna_strand>TTCGTTGCACAGAAGCCTGATACATGATGGATCATCTTTGTTTATTCCAGATAA..............................................................................................................TGGGTTCGGGTGTCATCTGAGTTCCCTTAACAAATTGAATGCAAGTGATGGTTCATATAAACTCTCAGGATATATCTCTGGTATGTTCACACAGTGAAG.........................................................................................GTCTTTCAATATTTTTGTATGAACTTATTTCAGTATATTTTCCTGAACAAAGAAAATGGAAACTAATCGTTGGG.......................................................................................................ATATCAATTCAAGATTTATTTCCAAAAGACCAACACATAAATTACTTAATAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E392191" ref_strand="+" ref_description="SGN-E392191 	[TUS-34-M19]">
      <seq>gttcgttgcacagactcctgatacatgatggatcatctttgtttattccagataatgggttcgggtgtcatctgagttcccttaactccttgaatgcaagtgatggttcatataaactctcaggatatatctctggtatgttcacacagtgaaggtctttcaatatttttgtatgaacttatttcagtatattttcctgaacaaagaaaatggaaactaatcgttgggatatcaattcaagatttatttccaaaagaccaacacataaattactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="-" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="53637" stop="52461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53337" g_stop="53283" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53282" i_stop="53173" i_length="110">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.925" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53172" g_stop="53074" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="154" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53073" i_stop="52985" i_length="89">
            <donor d_prob="0.161" d_score="1.00"/>
            <acceptor a_prob="0.668" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52984" g_stop="52911" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="228" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52910" i_stop="52808" i_length="103">
            <donor d_prob="0.577" d_score="1.00"/>
            <acceptor a_prob="0.765" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52807" g_stop="52761" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="275" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="-" ref_id="SGN-E392191" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>275</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53337" e_stop="53283"/>
          <exon e_start="53172" e_stop="53074"/>
          <exon e_start="52984" e_stop="52911"/>
          <exon e_start="52807" e_stop="52761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGTTGCACAGAAGCCTGATACATGATGGATCATCTTTGTTTATTCCAGATAAGTTGAGGATATTTCCTGTCTTATTCTCTTCAGATTTTGTTCATTTGCACGCAATGAAGATGACCTTCTTTGCACACGTGCTTGTCCTTCTCTGTTTCTGCTGTTGTCCAGTGGGTTCGGGTGTCATCTGAGTTCCCTTAACAAATTGAATGCAAGTGATGGTTCATATAAACTCTCAGGATATATCTCTGGTATGTTCACACAGTGAAGGTATACAGGCTCAAGTTGATGGATAGGAGATGTGATAAGTTTATCTTTTCTACACTTTATTTCCCTGACAATCACTGTTTAATTTGCAGGTCTTTCAATATTTTTGTATGAACTTATTTCAGTATATTTTCCTGAACAAAGAAAATGGAAACTAATCGTTGGGGTTAGCATTCACTTTATTGAATTCTTGTTTCTCACAGTGCATTTACTATATCGGTGCTTCAGTGCTTGTTTTCAGTGGTGTTCTTGTTTTCCTTGTAATGCAGATATCAATTCAAGATTTATTTCCAAAAGACCAACACATAAATTACTT</genome_strand>
        <mrna_strand>GTTCGTTGCACAGACTCCTGATACATGATGGATCATCTTTGTTTATTCCAGATAA..............................................................................................................TGGGTTCGGGTGTCATCTGAGTTCCCTTAACTCCTTGAATGCAAGTGATGGTTCATATAAACTCTCAGGATATATCTCTGGTATGTTCACACAGTGAAG.........................................................................................GTCTTTCAATATTTTTGTATGAACTTATTTCAGTATATTTTCCTGAACAAAGAAAATGGAAACTAATCGTTGGG.......................................................................................................ATATCAATTCAAGATTTATTTCCAAAAGACCAACACATAAATTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E375489" ref_strand="+" ref_description="SGN-E375489 	[TUS-34-L18]">
      <seq>ttcgttgcacagaagcctgatacatgatggatcatctttgtttattccagataatgggttcgggtgtcatctgagttcccttaacaaattgaatgcaagtgatggttcatataaactctcaggatatatctctggtatgttcacacagtgaaggtctttcaatatttttgtatgaacttatttcagtatattttcctgaacaaagaaaatggaaactaatcgttgggatatcaattcaagatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="-" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="53636" stop="52600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53336" g_stop="53283" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53282" i_stop="53173" i_length="110">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53172" g_stop="53074" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="153" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="53073" i_stop="52985" i_length="89">
            <donor d_prob="0.161" d_score="1.00"/>
            <acceptor a_prob="0.668" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52984" g_stop="52911" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="227" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52910" i_stop="52808" i_length="103">
            <donor d_prob="0.577" d_score="1.00"/>
            <acceptor a_prob="0.765" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52807" g_stop="52792" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="243" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="-" ref_id="SGN-E375489" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>243</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53336" e_stop="53283"/>
          <exon e_start="53172" e_stop="53074"/>
          <exon e_start="52984" e_stop="52911"/>
          <exon e_start="52807" e_stop="52792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTTGCACAGAAGCCTGATACATGATGGATCATCTTTGTTTATTCCAGATAAGTTGAGGATATTTCCTGTCTTATTCTCTTCAGATTTTGTTCATTTGCACGCAATGAAGATGACCTTCTTTGCACACGTGCTTGTCCTTCTCTGTTTCTGCTGTTGTCCAGTGGGTTCGGGTGTCATCTGAGTTCCCTTAACAAATTGAATGCAAGTGATGGTTCATATAAACTCTCAGGATATATCTCTGGTATGTTCACACAGTGAAGGTATACAGGCTCAAGTTGATGGATAGGAGATGTGATAAGTTTATCTTTTCTACACTTTATTTCCCTGACAATCACTGTTTAATTTGCAGGTCTTTCAATATTTTTGTATGAACTTATTTCAGTATATTTTCCTGAACAAAGAAAATGGAAACTAATCGTTGGGGTTAGCATTCACTTTATTGAATTCTTGTTTCTCACAGTGCATTTACTATATCGGTGCTTCAGTGCTTGTTTTCAGTGGTGTTCTTGTTTTCCTTGTAATGCAGATATCAATTCAAGATT</genome_strand>
        <mrna_strand>TTCGTTGCACAGAAGCCTGATACATGATGGATCATCTTTGTTTATTCCAGATAA..............................................................................................................TGGGTTCGGGTGTCATCTGAGTTCCCTTAACAAATTGAATGCAAGTGATGGTTCATATAAACTCTCAGGATATATCTCTGGTATGTTCACACAGTGAAG.........................................................................................GTCTTTCAATATTTTTGTATGAACTTATTTCAGTATATTTTCCTGAACAAAGAAAATGGAAACTAATCGTTGGG.......................................................................................................ATATCAATTCAAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E271380" ref_strand="+" ref_description="SGN-E271380 	[cLEM-5-O21]">
      <seq>ctcgtgccgaatcggcacgaggcaactgtcacacttgttggtttctaataaacagaaacaaacagcagcagagaactgatcagaaaaacaaaaacaaaatggcagcctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59398" stop="60629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59693" g_stop="60033" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60329" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="494" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E271380" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59693" e_stop="60033"/>
          <exon e_start="60177" e_stop="60329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTCTGCAATCTG-ACCATCCAACTGTCACACTTGTTAGTTTCTAATAAACAGAAACAAACAGCAGCAGAGAACTGATCAGAAAAACAAAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAAC</genome_strand>
        <mrna_strand>CTCGTGCCG-AATCGGCACGAGGCAACTGTCACACTTGTTGGTTTCTAATAAACAGAAACAAACAGCAGCAGAGAACTGATCAGAAAAACAAAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E295479" ref_strand="+" ref_description="SGN-E295479 	[cLET-23-E8]">
      <seq>ccaactgtcacacttgttagtttctaataaacagaaacaaacagcagcagagaactgatcagaaaaacaaaaacaaaatggcagcctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59414" stop="60605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59714" g_stop="60033" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60305" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="449" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E295479" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59714" e_stop="60033"/>
          <exon e_start="60177" e_stop="60305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTGTCACACTTGTTAGTTTCTAATAAACAGAAACAAACAGCAGCAGAGAACTGATCAGAAAAACAAAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTT</genome_strand>
        <mrna_strand>CCAACTGTCACACTTGTTAGTTTCTAATAAACAGAAACAAACAGCAGCAGAGAACTGATCAGAAAAACAAAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E270139" ref_strand="+" ref_description="SGN-E270139 	[cLEM-7-F24]">
      <seq>ggcctcgtgccgaatcggcacgaggcaactgtgcacacttgttaggttctaataaacagaaacaaacagcagcagagaactgatcagaaaaacaaaaacaaaatggcagcctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59398" stop="60630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59719" g_stop="60033" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="345" r_length="314" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60330" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="499" r_length="154" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E270139" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59719" e_stop="60033"/>
          <exon e_start="60177" e_stop="60330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCACACTTGTTAGTTTCTAATAAACAGAAACAAACAGCAGCAGAGAACTGATCAGAAAAACAAAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACG</genome_strand>
        <mrna_strand>TG-CACACTTGTTAGGTTCTAATAAACAGAAACAAACAGCAGCAGAGAACTGATCAGAAAAACAAAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E555431" ref_strand="+" ref_description="SGN-E555431 	[cTSC-3-F17]">
      <seq>cacacttgttagtttctaataaacagaaacaaacagcagcagagaactgatcagaaaaacaaaaacaaaatggcagcctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgttactgtccagcttcctggtggtgagcgtgttccgttcctcttcaccatcaaacaacttgtggcatctggaaagcctgagagcttcagtggcgacttccttgtgccatcctacagaggttcatcgtttcttgacccaaaaggcaggggtggatccactggttacgacaatgctgttgcattgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59422" stop="61013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59722" g_stop="60033" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60713" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="849" r_length="537" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E555431" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59722" e_stop="60033"/>
          <exon e_start="60177" e_stop="60713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACTTGTTAGTTTCTAATAAACAGAAACAAACAGCAGCAGAGAACTGATCAGAAAAACAAAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGACCCAAAAGGCAGGGGTGGATCCACTGGTTACGACAATGCTGTTGCATTGCCA</genome_strand>
        <mrna_strand>CACACTTGTTAGTTTCTAATAAACAGAAACAAACAGCAGCAGAGAACTGATCAGAAAAACAAAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGACCCAAAAGGCAGGGGTGGATCCACTGGTTACGACAATGCTGTTGCATTGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E554134" ref_strand="+" ref_description="SGN-E554134 	[cTSC-3-F18]">
      <seq>cacacttgttagtttctaataaacagaaacaaacagcagcagagaactgatcagaaaaacaaaaacaaaatggcagcctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgttactgtccagcttcctggtggtgagcgtgttccgttcctcttcaccatcaaacaacttgtggcatctggaaagcctgagagcttcagtggcgacttccttgtgccatcctacagaggttcatcgtttcttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59422" stop="60962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59722" g_stop="60033" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60662" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="798" r_length="486" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E554134" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59722" e_stop="60033"/>
          <exon e_start="60177" e_stop="60662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACTTGTTAGTTTCTAATAAACAGAAACAAACAGCAGCAGAGAACTGATCAGAAAAACAAAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGAC</genome_strand>
        <mrna_strand>CACACTTGTTAGTTTCTAATAAACAGAAACAAACAGCAGCAGAGAACTGATCAGAAAAACAAAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E340312" ref_strand="+" ref_description="SGN-E340312 	[cTOF-2-A16]">
      <seq>aacagaaacaaacagcagcagagaactgatcagaaaaacaaaaacaaaatggcagcctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgttactgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59443" stop="60836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59743" g_stop="60033" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60536" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="651" r_length="360" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E340312" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59743" e_stop="60033"/>
          <exon e_start="60177" e_stop="60536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGAAACAAACAGCAGCAGAGAACTGATCAGAAAAACAAAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTC</genome_strand>
        <mrna_strand>AACAGAAACAAACAGCAGCAGAGAACTGATCAGAAAAACAAAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E348223" ref_strand="+" ref_description="SGN-E348223 	[cTOF-27-M11]">
      <seq>agaaacaaacagcagcagagaactgatcagaaaaacaaaaacaaaatggcagcctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattganggaccgtttgaagtatctcctgatggcactgttaaatttgangagaaagatggaattgattacgctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59446" stop="60827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59746" g_stop="60033" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60527" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="639" r_length="351" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E348223" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59746" e_stop="60033"/>
          <exon e_start="60177" e_stop="60527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACAAACAGCAGCAGAGAACTGATCAGAAAAACAAAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCT</genome_strand>
        <mrna_strand>AGAAACAAACAGCAGCAGAGAACTGATCAGAAAAACAAAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGANGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGANGAGAAAGATGGAATTGATTACGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E345353" ref_strand="+" ref_description="SGN-E345353 	[cTOF-13-K19]">
      <seq>gaaacaaacagcagcagagaactgatcagaaaaacaaaaacaaaatggcagcctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgttactgtccagcttcctggtggtgagcgtgntccgttcctcttcacatcaaacaacttgtggcatctgggaagcctgagagcttcagtggcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59447" stop="60923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59747" g_stop="60033" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60623" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="733" r_length="446" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E345353" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59747" e_stop="60033"/>
          <exon e_start="60177" e_stop="60623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACAAACAGCAGCAGAGAACTGATCAGAAAAACAAAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGAC</genome_strand>
        <mrna_strand>GAAACAAACAGCAGCAGAGAACTGATCAGAAAAACAAAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGNTCCGTTCCTCTTCA-CATCAAACAACTTGTGGCATCTGGGAAGCCTGAGAGCTTCAGTGGCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E288265" ref_strand="+" ref_description="SGN-E288265 	[cLES-16-B21]">
      <seq>caaacagcagcagagaactgatcagaaaaacaaaaacaaaatggcagcctctctacaagcagctgctactcttatgcaaccaactaaagttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcaaaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59451" stop="60700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59751" g_stop="60033" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60400" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="507" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E288265" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59751" e_stop="60033"/>
          <exon e_start="60177" e_stop="60400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACAGCAGCAGAGAACTGATCAGAAAAACAAAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCC</genome_strand>
        <mrna_strand>CAAACAGCAGCAGAGAACTGATCAGAAAAACAAAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAAGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAAAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E339206" ref_strand="+" ref_description="SGN-E339206 	[cTOF-4-I13]">
      <seq>agcagagaactgatcagaaaaacaaaaacaaaatggcagcctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgttactgtccagcttcctggtggtgagcgtgttccgttcctcttcaccatcaaacaacttgtggcatctggaaagcctgagagcttcagtggcgacttccttgtgccatcctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59459" stop="60941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59759" g_stop="60033" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60641" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="740" r_length="465" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E339206" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59759" e_stop="60033"/>
          <exon e_start="60177" e_stop="60641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGAGAACTGATCAGAAAAACAAAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTAC</genome_strand>
        <mrna_strand>AGCAGAGAACTGATCAGAAAAACAAAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E325463" ref_strand="+" ref_description="SGN-E325463 	[cTOC-1-D2]">
      <seq>actgatcagaaaaacaaaaacaaaatggcgctctctacaagcagctgtactcttatgcaaccaactaagtgggggtcttgcaaaacaacttgccattgaggtcagctaaagttgagcaaggcatttggtcttgaaccatctgcatcaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59467" stop="60547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59767" g_stop="60033" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60247" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="325" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E325463" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.040" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59767" e_stop="60033"/>
          <exon e_start="60177" e_stop="60247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGATCAGAAAAACAAAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGT</genome_strand>
        <mrna_strand>ACTGATCAGAAAAACAAAAACAAAATGGC-G-CTCTCTACAAGCAGCTG-TACTCTTATGCAACCAACTAA-G-TGG-GG-GTCT-TG-CA-AAACAACTTGCCATTGAGGTCAGCT-AAAG-TTGAGCAAGGCATTTGGTCTTGAACCATCTGCAT-CAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E317209" ref_strand="+" ref_description="SGN-E317209 	[cTOA-28-C10]">
      <seq>tgatcagaaaaacaaaaacaaaatggcagcctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaagagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaagtgttgataacttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagaaggcgtaagcaaaaattcagccccagacttccaaaagaacaagcttatgactcgcttaacctacactttggatgagattgaaggaacgtttgaagtatctcctgatggcactggtaaatttgaagagaaagatggaattgattacgctgctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59469" stop="60830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59769" g_stop="60033" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60530" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="619" r_length="354" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E317209" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59769" e_stop="60033"/>
          <exon e_start="60177" e_stop="60530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCAGAAAAACAAAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTT</genome_strand>
        <mrna_strand>TGATCAGAAAAACAAAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................AGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAAGTGTTGATAACTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAAGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGAACAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAAGGAACGTTTGAAGTATCTCCTGATGGCACTGGTAAATTTGAAGAGAAAGATGGAATTGATTACGCTGCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E287888" ref_strand="+" ref_description="SGN-E287888 	[cLES-19-F3]">
      <seq>tgatcagaaaaacaaaaacaaaatggcagcctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59469" stop="60691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59769" g_stop="60033" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60391" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="480" r_length="215" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E287888" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59769" e_stop="60033"/>
          <exon e_start="60177" e_stop="60391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCAGAAAAACAAAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAA</genome_strand>
        <mrna_strand>TGATCAGAAAAACAAAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E277715" ref_strand="+" ref_description="SGN-E277715 	[cLEL-5-A10]">
      <seq>gcacgagcaaaaacaaaatggcagcctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59479" stop="60582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59774" g_stop="60033" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60282" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="366" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E277715" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59774" e_stop="60033"/>
          <exon e_start="60177" e_stop="60282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAACAAAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCA</genome_strand>
        <mrna_strand>GCACGAGCAAAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E299112" ref_strand="+" ref_description="SGN-E299112 	[cLET-42-M18]">
      <seq>aaaaacaaaaacaaaatggcagcctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59476" stop="60752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59776" g_stop="60033" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60452" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="534" r_length="276" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E299112" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59776" e_stop="60033"/>
          <exon e_start="60177" e_stop="60452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAG</genome_strand>
        <mrna_strand>AAAAACAAAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E299147" ref_strand="+" ref_description="SGN-E299147 	[cLET-42-P13]">
      <seq>aaaaacaaaaacaaaatggcagcctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcagggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcacgacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttaaagccaacatcattcaccgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59476" stop="60668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59776" g_stop="60033" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60368" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="450" r_length="192" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E299147" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59776" e_stop="60033"/>
          <exon e_start="60177" e_stop="60368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTC</genome_strand>
        <mrna_strand>AAAAACAAAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAGGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCACGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAAAGCCAACATCATTCACCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E317689" ref_strand="+" ref_description="SGN-E317689 	[cTOB-8-E12]">
      <seq>gaaaacaaaggcaatatggcagtctgtgtacaagcagctggtagggttatccaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcaggtcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgctctgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccatagcaagacatacatggaaggaaagggaactggaacatcaaaccagtgccctaccatagatggaggtgttgatagctttttcttcaatccacgcaaatacaacgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59522" stop="60633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59776" g_stop="60033" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60333" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E317689" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59776" e_stop="60033"/>
          <exon e_start="60177" e_stop="60333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCA</genome_strand>
        <mrna_strand>GAAAACAAAGGCAATATGGCAGTCTGTGTACAAGCAGCTGGTAGGGTTATCCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGGTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCTCTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCATAGCAAGACATACATGGAAGGAAAGGGAACTGGAACATCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTTCTTCAATCCACGCAAATACAACGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E203233" ref_strand="+" ref_description="SGN-E203233 	[cLEB-3-C13]">
      <seq>gcacgagaaaatggcagcctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59486" stop="60788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59781" g_stop="60033" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60488" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="565" r_length="312" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E203233" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59781" e_stop="60033"/>
          <exon e_start="60177" e_stop="60488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACT</genome_strand>
        <mrna_strand>GCACGAGAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E280039" ref_strand="+" ref_description="SGN-E280039 	[cLEL-7-O16]">
      <seq>gcacgagaaaatggcagcctttctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaagtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaagcaaaaggcctaagcaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59486" stop="60692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59781" g_stop="60033" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60392" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="469" r_length="216" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E280039" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59781" e_stop="60033"/>
          <exon e_start="60177" e_stop="60392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAAT</genome_strand>
        <mrna_strand>GCACGAGAAAATGGCAGCCTTTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAAGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAAGCAAAAGGCCTAAGCAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E279248" ref_strand="+" ref_description="SGN-E279248 	[cLEL-4-A12]">
      <seq>gcacgagaaaatggcagcctctctacaagcagctgctactcttatgcagccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59486" stop="60578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59781" g_stop="60033" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60278" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="355" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E279248" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59781" e_stop="60033"/>
          <exon e_start="60177" e_stop="60278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCT</genome_strand>
        <mrna_strand>GCACGAGAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAGCCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E328318" ref_strand="+" ref_description="SGN-E328318 	[cTOC-21-E1]">
      <seq>aaaaacaaaatggcagcctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgntactgtccagcttcctggtggtgagcgtgttccgttcctcttcacatcaaacaacttgtggcatctggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59482" stop="60901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59782" g_stop="60033" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60601" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="676" r_length="424" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E328318" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59782" e_stop="60033"/>
          <exon e_start="60177" e_stop="60601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAA</genome_strand>
        <mrna_strand>AAAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGNTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCA-CATCAAACAACTTGTGGCATCTGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E328612" ref_strand="+" ref_description="SGN-E328612 	[cTOC-23-B10]">
      <seq>aaaaacaaaatggcagcctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgttactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59482" stop="60835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59782" g_stop="60033" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60535" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="611" r_length="359" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E328612" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59782" e_stop="60033"/>
          <exon e_start="60177" e_stop="60535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGT</genome_strand>
        <mrna_strand>AAAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E324122" ref_strand="+" ref_description="SGN-E324122 	[cTOC-3-P17]">
      <seq>aaaacaaaatggcagcctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59483" stop="60626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59783" g_stop="60033" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60326" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="401" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E324122" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59783" e_stop="60033"/>
          <exon e_start="60177" e_stop="60326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATAC</genome_strand>
        <mrna_strand>AAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E318553" ref_strand="+" ref_description="SGN-E318553 	[cTOB-10-N12]">
      <seq>acaaaatggcagcctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59486" stop="60748"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59786" g_stop="60033" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60448" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="520" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E318553" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59786" e_stop="60033"/>
          <exon e_start="60177" e_stop="60448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGA</genome_strand>
        <mrna_strand>ACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E291040" ref_strand="+" ref_description="SGN-E291040 	[cLET-8-C9]">
      <seq>gcaaaatggcagcctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcaactcaaagtttgagcaaggcattaggtcttgaaccatctgcatacaagctttattgctctttgcaagctgatcttaaagatttttctcacaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttgtgcttagagccaacatcattcaccgtcaaggcagagggcgtaaagcaaaaatttagccccagact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59487" stop="60705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59786" g_stop="60033" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60405" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="478" r_length="230" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E291040" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59786" e_stop="60033"/>
          <exon e_start="60177" e_stop="60405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGT-AAGCAAAAATTCAGCCCCAGACT</genome_strand>
        <mrna_strand>GCAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAACTCAAAGTTTGAGCAAGGCATTAGGTCTTGAACCATCTGCATACAAGCTTTATTGCTCTTTGCAAGCTGATCTTAAAGATTTTTCTCACAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTGTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAAGCAAAAATTTAGCCCCAGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E315385" ref_strand="+" ref_description="SGN-E315385 	[cTOA-22-G23]">
      <seq>aaaatggcagcctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgttactgtccagcttcctggtggtgagcgtgttccgttcctcttcaccatcaaacaacttgtggcatctggaaagcctgagagcttcagtggcgacttccttgtgccatcctacagaaggtcatcgtttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59488" stop="60958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59788" g_stop="60033" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60658" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="728" r_length="482" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E315385" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59788" e_stop="60033"/>
          <exon e_start="60177" e_stop="60658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCT</genome_strand>
        <mrna_strand>AAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAAGGTCATCGTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E321604" ref_strand="+" ref_description="SGN-E321604 	[cTOB-25-K18]">
      <seq>aaaatggcagcctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgttactgtccagcttcctggtggtgagcgtgttccgttcctcttcacatcaaacaacttgtggcatctggaaagcctgagagcttcagtggcgacttccttgtgcatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59488" stop="60938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59788" g_stop="60033" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60638" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="706" r_length="460" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E321604" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59788" e_stop="60033"/>
          <exon e_start="60177" e_stop="60638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCC</genome_strand>
        <mrna_strand>AAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCA-CATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTG-CATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E372681" ref_strand="+" ref_description="SGN-E372681 	[TUS-31-K1]">
      <seq>aaaatggcagcctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgttactgtccagcttcctggtggtgagcgtgttccgttcctcttcaccatcaaacaacttgtggcatctggaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59488" stop="60902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59788" g_stop="60033" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60602" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="672" r_length="426" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E372681" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59788" e_stop="60033"/>
          <exon e_start="60177" e_stop="60602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAG</genome_strand>
        <mrna_strand>AAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E315173" ref_strand="+" ref_description="SGN-E315173 	[cTOA-24-L17]">
      <seq>aaaatggcagcctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgttactgtccagcttcctggtggtgagcgtgttccgttcctcttcacatcaaacaacttgtggcatctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59488" stop="60898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59788" g_stop="60033" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60598" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="667" r_length="421" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E315173" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59788" e_stop="60033"/>
          <exon e_start="60177" e_stop="60598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGG</genome_strand>
        <mrna_strand>AAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCA-CATCAAACAACTTGTGGCATCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E287147" ref_strand="+" ref_description="SGN-E287147 	[cLES-6-O14]">
      <seq>aaaatggcagcctctctacaagcagctgctactcttatgcaaccaactaagagttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgttactgtccagcttcctggtggtgagcgtgttccgttcctcttcaccatcaaacaacttgtggcatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59488" stop="60897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59788" g_stop="60033" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60597" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="668" r_length="421" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E287147" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59788" e_stop="60033"/>
          <exon e_start="60177" e_stop="60597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAG-GTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTG</genome_strand>
        <mrna_strand>AAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGAGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E322191" ref_strand="+" ref_description="SGN-E322191 	[cTOB-24-D5]">
      <seq>aaaatggcagcctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgttactgtccagcttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59488" stop="60845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59788" g_stop="60033" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60545" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="615" r_length="369" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E322191" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59788" e_stop="60033"/>
          <exon e_start="60177" e_stop="60545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCT</genome_strand>
        <mrna_strand>AAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E292123" ref_strand="+" ref_description="SGN-E292123 	[cLET-1-K13]">
      <seq>aaaatggcagcctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggaagaagatggaattgattacgctgctgttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59488" stop="60834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59788" g_stop="60033" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60534" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="604" r_length="358" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E292123" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59788" e_stop="60033"/>
          <exon e_start="60177" e_stop="60534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTG</genome_strand>
        <mrna_strand>AAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAAGAAGATGGAATTGATTACGCTGCTGTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E300569" ref_strand="+" ref_description="SGN-E300569 	[cLET-45-C20]">
      <seq>aaaatggcagcctctctacaagcagctgttactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaagaagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59488" stop="60820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59788" g_stop="60033" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60520" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="590" r_length="344" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E300569" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59788" e_stop="60033"/>
          <exon e_start="60177" e_stop="60520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTA</genome_strand>
        <mrna_strand>AAAATGGCAGCCTCTCTACAAGCAGCTGTTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGAAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E284216" ref_strand="+" ref_description="SGN-E284216 	[cLER-16-E8]">
      <seq>aaaatggcagcctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaaacttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59488" stop="60791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59788" g_stop="60033" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60491" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="561" r_length="315" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E284216" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59788" e_stop="60033"/>
          <exon e_start="60177" e_stop="60491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTT</genome_strand>
        <mrna_strand>AAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAACTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E315039" ref_strand="+" ref_description="SGN-E315039 	[cTOB-4-M6]">
      <seq>aaaatggcagcctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaagatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaagcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccggttgaagtatctcctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59488" stop="60783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59788" g_stop="60033" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60483" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="553" r_length="307" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E315039" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59788" e_stop="60033"/>
          <exon e_start="60177" e_stop="60483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATG</genome_strand>
        <mrna_strand>AAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAAGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAAGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGGTTGAAGTATCTCCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E298331" ref_strand="+" ref_description="SGN-E298331 	[cLET-41-I18]">
      <seq>aaaatggcagcctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59488" stop="60750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59788" g_stop="60033" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60450" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="520" r_length="274" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E298331" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59788" e_stop="60033"/>
          <exon e_start="60177" e_stop="60450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATG</genome_strand>
        <mrna_strand>AAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E299011" ref_strand="+" ref_description="SGN-E299011 	[cLET-42-L5]">
      <seq>aaaatggcagcctctctacaagcagctgctactcttatgcaaccaactaagggtggtggtgtctctgccagaaacaacttgccattgaagtcagctcaaagcttgaaacaagcatgggggcgtggaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagatttagctcataaatgcactgatgctgccaagattgcaggatccgcccttgccacttctgcccttgttgtctcacgagctaatgctgaaagagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagctgttccttcaagcctggcaaatacaacgcccagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagctgatgactcgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59488" stop="60733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59788" g_stop="60033" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60433" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="504" r_length="257" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E299011" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59788" e_stop="60033"/>
          <exon e_start="60177" e_stop="60433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTC-TTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTT</genome_strand>
        <mrna_strand>AAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGGTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAAGTCAGCTCAAAGCTTGAAACAAGCATGGGGGCGTGGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTAGCTCATAAATGCACTGATGCTGCCAAGATTGCAGGATCCGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................CGAGCTAATGCTGAAAGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTGTTCCTTCAAGCCTGGCAAATACAACGCCCAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTGATGACTCGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E292222" ref_strand="+" ref_description="SGN-E292222 	[cLET-1-B22]">
      <seq>aaaatggcagcctctctacaagcagctgctactcttatgcaaccaactaaagttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcacaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttatagccaacatcattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59488" stop="60663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59788" g_stop="60033" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60363" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="433" r_length="187" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E292222" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59788" e_stop="60033"/>
          <exon e_start="60177" e_stop="60363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCA</genome_strand>
        <mrna_strand>AAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAAGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCACAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTATAGCCAACATCATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E300568" ref_strand="+" ref_description="SGN-E300568 	[cLET-45-C8]">
      <seq>aaaatttcagcctctttactagcagctgttactcttatgcaaccaactaagggtggtggtgtctctgccataaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59488" stop="60323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59788" g_stop="60023" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E300568" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59788" e_stop="60023"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCT</genome_strand>
        <mrna_strand>AAAATTTCAGCCTCTTTACTAGCAGCTGTTACTCTTATGCAACCAACTAAGGGTGGTGGTGTCTCTGCCATAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E340331" ref_strand="+" ref_description="SGN-E340331 	[cTOF-2-K10]">
      <seq>aaatggcagcctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgttactgtccagcttcctggtggtgagcgtgttccgttcctcttcaccataaacaacttgtggcatctggaaagcctgagagcttcagtggcgacttccttgtgccatcctacagaggttcatcgtttcttgacccaaaggcaggggtggatccactggttacgacaatgctgttgcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59489" stop="61010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59789" g_stop="60033" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60710" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="777" r_length="532" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E340331" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59789" e_stop="60033"/>
          <exon e_start="60177" e_stop="60710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGACCCAAAAGGCAGGGGTGGATCCACTGGTTACGACAATGCTGTTGCATTG</genome_strand>
        <mrna_strand>AAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCAT-AAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGACCC-AAAGGCAGGGGTGGATCCACTGGTTACGACAATGCTGTTGCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E266267" ref_strand="+" ref_description="SGN-E266267 	[cLEI-3-H7]">
      <seq>atggcttcctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagaaggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59491" stop="60750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59791" g_stop="60033" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60450" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="517" r_length="274" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E266267" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59791" e_stop="60033"/>
          <exon e_start="60177" e_stop="60450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATG</genome_strand>
        <mrna_strand>ATGGCTTCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAAGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E321667" ref_strand="+" ref_description="SGN-E321667 	[cTOB-25-J2]">
      <seq>tggcagcctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagaaggcgtaagcaaaaattcagccccagacttccnnaaagacaagcttatgactcgcttaacctacactttggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59492" stop="60750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59792" g_stop="60033" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60450" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="516" r_length="274" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E321667" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59792" e_stop="60033"/>
          <exon e_start="60177" e_stop="60450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATG</genome_strand>
        <mrna_strand>TGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAAGGCGTAAGCAAAAATTCAGCCCCAGACTTCCNNAAAGACAAGCTTATGACTCGCTTAACCTACACTTTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E299309" ref_strand="+" ref_description="SGN-E299309 	[cLET-43-B6]">
      <seq>tggcagcctctctacaagcagctgctactcttatgcaaccaactaaagttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaagagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaagcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59492" stop="60750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59792" g_stop="60033" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60450" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="516" r_length="274" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E299309" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59792" e_stop="60033"/>
          <exon e_start="60177" e_stop="60450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATG</genome_strand>
        <mrna_strand>TGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAAGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................AGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAAGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E278801" ref_strand="+" ref_description="SGN-E278801 	[cLER-2-F23]">
      <seq>tggcagcctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59492" stop="60741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59792" g_stop="60033" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60441" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="507" r_length="265" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E278801" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59792" e_stop="60033"/>
          <exon e_start="60177" e_stop="60441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACA</genome_strand>
        <mrna_strand>TGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E296797" ref_strand="+" ref_description="SGN-E296797 	[cLET-26-I24]">
      <seq>tggcagcctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59492" stop="60673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59792" g_stop="60033" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60373" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="439" r_length="197" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E296797" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59792" e_stop="60033"/>
          <exon e_start="60177" e_stop="60373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGC</genome_strand>
        <mrna_strand>TGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E296858" ref_strand="+" ref_description="SGN-E296858 	[cLET-26-H18]">
      <seq>tggcagcctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59492" stop="60569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59792" g_stop="60033" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60269" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="335" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E296858" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59792" e_stop="60033"/>
          <exon e_start="60177" e_stop="60269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAAC</genome_strand>
        <mrna_strand>TGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E299141" ref_strand="+" ref_description="SGN-E299141 	[cLET-42-N11]">
      <seq>tggctgcctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcaaaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59492" stop="60555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59792" g_stop="60033" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60255" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="321" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E299141" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59792" e_stop="60033"/>
          <exon e_start="60177" e_stop="60255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAA</genome_strand>
        <mrna_strand>TGGCTGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAAAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E315356" ref_strand="+" ref_description="SGN-E315356 	[cTOA-24-L18]">
      <seq>ggcagactctctacaatcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccaaaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcatgaaccatctgcatccaaactttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaagagctaatgctgaaggagttccaaaacatctaacctttgatgagatccagagcaagacatacatggaagtatagggaactggaacagcataccagtgccctaccatagatggaggagttgatagcttttccttcaagccaggcaaatacaaagccaacaagttctgcttatagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgttactgtccatcttcctggtggcgagcgagatccgttcctcttcacatcaaacaacttgtggcatctggaaagcctgagagcttcaatggcgacttcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59493" stop="60929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59793" g_stop="60033" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60629" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="693" r_length="452" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E315356" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59793" e_stop="60033"/>
          <exon e_start="60177" e_stop="60629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTT</genome_strand>
        <mrna_strand>GGCAGACTCTCTACAATCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAAAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCATGAACCATCTGCATCCAAACTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................AGAGCTAATGCTGAAGGAGTTCCAAAACATCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTATAGGGAACTGGAACAGCATACCAGTGCCCTACCATAGATGGAGGAGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAAAGCCAACAAGTTCTGCTTATAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCATCTTCCTGGTGGCGAGCGAGATCCGTTCCTCTTCA-CATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAATGGCGACTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E347903" ref_strand="+" ref_description="SGN-E347903 	[cTOF-31-I4]">
      <seq>ggcagcctctctacaagcagctgctacctcttacgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaacccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgttactgtccagcttnctggtggtgagcgtgntccgttcctcttcccatcaaacaacttgtggcatctggaaagcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59493" stop="60906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59793" g_stop="60033" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60606" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="672" r_length="429" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E347903" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59793" e_stop="60033"/>
          <exon e_start="60177" e_stop="60606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGCCTCTCTACAAGCAGCTGCTA-CTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAA-CCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTG</genome_strand>
        <mrna_strand>GGCAGCCTCTCTACAAGCAGCTGCTACCTCTTACGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTNCTGGTGGTGAGCGTGNTCCGTTCCTCTTC-CCATCAAACAACTTGTGGCATCTGGAAAGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E288348" ref_strand="+" ref_description="SGN-E288348 	[cLES-16-C7]">
      <seq>ggcagcctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59493" stop="60834"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59793" g_stop="60033" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60534" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="599" r_length="358" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E288348" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59793" e_stop="60033"/>
          <exon e_start="60177" e_stop="60534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTG</genome_strand>
        <mrna_strand>GGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E300428" ref_strand="+" ref_description="SGN-E300428 	[cLET-45-I14]">
      <seq>ggcagcctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59493" stop="60750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59793" g_stop="60033" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60450" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="515" r_length="274" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E300428" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59793" e_stop="60033"/>
          <exon e_start="60177" e_stop="60450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATG</genome_strand>
        <mrna_strand>GGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E329490" ref_strand="+" ref_description="SGN-E329490 	[cTOD-11-L7]">
      <seq>gcagcctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59494" stop="60798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59794" g_stop="60033" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60498" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="562" r_length="322" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E329490" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59794" e_stop="60033"/>
          <exon e_start="60177" e_stop="60498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTG</genome_strand>
        <mrna_strand>GCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E279046" ref_strand="+" ref_description="SGN-E279046 	[cLEL-4-G11]">
      <seq>gcacgagtctacaagcagctgttactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaggacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59502" stop="60668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59794" g_stop="60033" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60368" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="431" r_length="192" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E279046" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59794" e_stop="60033"/>
          <exon e_start="60177" e_stop="60368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTC</genome_strand>
        <mrna_strand>GCA-CGAGTCTACAAGCAGCTGTTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAGGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E323340" ref_strand="+" ref_description="SGN-E323340 	[cTOC-10-I19]">
      <seq>cagcctctctacaagcagctgctactcttatgcaaccgactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59495" stop="60667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59795" g_stop="60033" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60367" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="430" r_length="191" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E323340" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59795" e_stop="60033"/>
          <exon e_start="60177" e_stop="60367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGT</genome_strand>
        <mrna_strand>CAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCGACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E347290" ref_strand="+" ref_description="SGN-E347290 	[cTOF-25-P16]">
      <seq>cctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59498" stop="60796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59798" g_stop="60033" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60496" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="556" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E347290" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59798" e_stop="60033"/>
          <exon e_start="60177" e_stop="60496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATT</genome_strand>
        <mrna_strand>CCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E288724" ref_strand="+" ref_description="SGN-E288724 	[cLES-8-P5]">
      <seq>cctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgaaggaccgtttgaagtatctcctgatggcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59498" stop="60788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59798" g_stop="60033" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60488" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="548" r_length="312" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E288724" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59798" e_stop="60033"/>
          <exon e_start="60177" e_stop="60488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACT</genome_strand>
        <mrna_strand>CCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAAGGACCGTTTGAAGTATCTCCTGATGGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E265145" ref_strand="+" ref_description="SGN-E265145 	[cLEI-2-C2]">
      <seq>cctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtggctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgatgtctcacgagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagaccaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaagcagagggcgtaagcaaaaattcagccccagactttcaaaagaccaagcttatgactcgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59498" stop="60732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59798" g_stop="60033" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60432" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="492" r_length="256" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E265145" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59798" e_stop="60033"/>
          <exon e_start="60177" e_stop="60432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCT</genome_strand>
        <mrna_strand>CCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGGCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGATGTCTCA...............................................................................................................................................CGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGACCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAAGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTTCAAAAGACCAAGCTTATGACTCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E295599" ref_strand="+" ref_description="SGN-E295599 	[cLET-23-N14]">
      <seq>cctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59498" stop="60702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59798" g_stop="60033" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60402" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="462" r_length="226" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E295599" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59798" e_stop="60033"/>
          <exon e_start="60177" e_stop="60402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAG</genome_strand>
        <mrna_strand>CCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E288592" ref_strand="+" ref_description="SGN-E288592 	[cLES-8-F10]">
      <seq>cctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgttcacaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59498" stop="60642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59798" g_stop="60033" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60342" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="402" r_length="166" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E288592" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59798" e_stop="60033"/>
          <exon e_start="60177" e_stop="60342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCT</genome_strand>
        <mrna_strand>CCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGTTCACAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E314491" ref_strand="+" ref_description="SGN-E314491 	[cTOB-1-C9]">
      <seq>ctctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgttactgtccagcttcctggtggtgagcgtgttccgttcctcttcaccatcaaacaacttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59499" stop="60889"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59799" g_stop="60033" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60589" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="648" r_length="413" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E314491" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59799" e_stop="60033"/>
          <exon e_start="60177" e_stop="60589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGT</genome_strand>
        <mrna_strand>CTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E296572" ref_strand="+" ref_description="SGN-E296572 	[cLET-39-C15]">
      <seq>gtctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaagagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgaaggaccgtttgaagtatctcctgatggcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59500" stop="60788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59799" g_stop="60033" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60488" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="547" r_length="312" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E296572" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59799" e_stop="60033"/>
          <exon e_start="60177" e_stop="60488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACT</genome_strand>
        <mrna_strand>GTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAAGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAAGGACCGTTTGAAGTATCTCCTGATGGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E346062" ref_strand="+" ref_description="SGN-E346062 	[cTOF-24-D6]">
      <seq>tctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgttactgtccagcttctgggtggtgagcgtggttccgttcctcttcacatcaacnaacttgtggcatctggaaagcctgagagcttcagtggcgactttccttgtgccatctaacagaggttcatcgtttcttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59500" stop="60962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59800" g_stop="60033" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60662" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="721" r_length="487" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E346062" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59800" e_stop="60033"/>
          <exon e_start="60177" e_stop="60662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGT-GTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGAC-TTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGAC</genome_strand>
        <mrna_strand>TCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCTGGGTGGTGAGCGTGGTTCCGTTCCTCTTCA-CATCAACNAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTTCCTTGTGCCATCTAACAGAGGTTCATCGTTTCTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E313858" ref_strand="+" ref_description="SGN-E313858 	[cTOA-17-B21]">
      <seq>tctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagaaggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59500" stop="60741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59800" g_stop="60033" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60441" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="499" r_length="265" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E313858" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59800" e_stop="60033"/>
          <exon e_start="60177" e_stop="60441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACA</genome_strand>
        <mrna_strand>TCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAAGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E279241" ref_strand="+" ref_description="SGN-E279241 	[cLEL-4-M23]">
      <seq>gcacgagagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccatccaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59505" stop="60692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59800" g_stop="60033" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60392" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="449" r_length="216" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E279241" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59800" e_stop="60033"/>
          <exon e_start="60177" e_stop="60392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAAT</genome_strand>
        <mrna_strand>GCACGA-GAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATCCAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E297280" ref_strand="+" ref_description="SGN-E297280 	[cLET-29-I4]">
      <seq>ctctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagactttcaaaagaccaagcttatgactcgcttaacctacacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59501" stop="60745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59801" g_stop="60033" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60445" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="502" r_length="269" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E297280" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59801" e_stop="60033"/>
          <exon e_start="60177" e_stop="60445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTT</genome_strand>
        <mrna_strand>CTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTTCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E313646" ref_strand="+" ref_description="SGN-E313646 	[cTOA-12-F13]">
      <seq>tctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtatgaagtatctcctgatggcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59502" stop="60788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59802" g_stop="60033" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60488" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="544" r_length="312" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E313646" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59802" e_stop="60033"/>
          <exon e_start="60177" e_stop="60488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACT</genome_strand>
        <mrna_strand>TCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTATGAAGTATCTCCTGATGGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E291114" ref_strand="+" ref_description="SGN-E291114 	[cLET-8-O18]">
      <seq>ctacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcgagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59503" stop="60544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59803" g_stop="60033" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60244" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="299" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E291114" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59803" e_stop="60033"/>
          <exon e_start="60177" e_stop="60244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGA</genome_strand>
        <mrna_strand>CTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCGAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E322987" ref_strand="+" ref_description="SGN-E322987 	[cTOB-30-L9]">
      <seq>tacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgttactgtccagcttcctggtggtgagcgtgttccgttcctcttcaccatcaaacaacttgtggcatctggaaagcctgagagcttcagtggcgacttccttgtgccatcctacagaggttcatcgtttcttgaccccaaagcaggggtggatccactggntacgacaatgctgttgcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59504" stop="61010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59804" g_stop="60033" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60710" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="763" r_length="533" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E322987" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59804" e_stop="60033"/>
          <exon e_start="60177" e_stop="60710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGACCCAAAAGGCAGGGGTGGATCCACTGGTTACGACAATGCTGTTGCATTG</genome_strand>
        <mrna_strand>TACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGACCCCAAA-GCAGGGGTGGATCCACTGGNTACGACAATGCTGTTGCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E322845" ref_strand="+" ref_description="SGN-E322845 	[cTOB-30-N15]">
      <seq>tacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgttactgtccagcttcctggtggtgagcgtgttccgttcctcttaccatcaaacaacttgtggcatctggaaagcctgagagcttcagtggcgacttccttgtgccatcctacagaggttcatcgtttcttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59504" stop="60962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59804" g_stop="60033" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60662" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="715" r_length="485" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E322845" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59804" e_stop="60033"/>
          <exon e_start="60177" e_stop="60662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGAC</genome_strand>
        <mrna_strand>TACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTT-ACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E322911" ref_strand="+" ref_description="SGN-E322911 	[cTOB-30-M13]">
      <seq>tacaagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgttactgtccagcttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59504" stop="60845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59804" g_stop="60033" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60545" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="599" r_length="369" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E322911" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59804" e_stop="60033"/>
          <exon e_start="60177" e_stop="60545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCT</genome_strand>
        <mrna_strand>TACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E299423" ref_strand="+" ref_description="SGN-E299423 	[cLET-43-O8]">
      <seq>tacaagcagctgctactcttatgcaaccaactaaggttgagggtgtctctggcaaaaacaacttgccattgaggtcaactcaaaggttgagcaaggcatttggtcttgaaccaaatccatacaacctttcttgctctttgcaagctgatcttaaagattttactcagaaatgcactgatgctgccaatatagaatgatatgaccttgccacttctgcccttgttgtctcaagagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59504" stop="60787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59804" g_stop="60033" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60487" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="541" r_length="311" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E299423" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59804" e_stop="60033"/>
          <exon e_start="60177" e_stop="60487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCAC</genome_strand>
        <mrna_strand>TACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGAGGGTGTCTCTGGCAAAAACAACTTGCCATTGAGGTCAACTCAAAGGTTGAGCAAGGCATTTGGTCTTGAACCAAATCCATACAACCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTACTCAGAAATGCACTGATGCTGCCAATATAGAATGATATGACCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................AGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E289276" ref_strand="+" ref_description="SGN-E289276 	[cLES-18-O12]">
      <seq>aagcagctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59507" stop="60347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59807" g_stop="60033" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60189" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="240" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E289276" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>240</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59807" e_stop="60033"/>
          <exon e_start="60177" e_stop="60189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTG</genome_strand>
        <mrna_strand>AAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E272808" ref_strand="+" ref_description="SGN-E272808 	[cLEM-21-P22]">
      <seq>ctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgttactgtccagcttcctggtggtgagcgtgttccgttcctcttcaccatcaaacaacttgtggcatctggaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59513" stop="60903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59813" g_stop="60033" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60603" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="648" r_length="427" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E272808" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59813" e_stop="60033"/>
          <exon e_start="60177" e_stop="60603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGC</genome_strand>
        <mrna_strand>CTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E285058" ref_strand="+" ref_description="SGN-E285058 	[cLER-19-F6]">
      <seq>ctgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgttactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59513" stop="60835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59813" g_stop="60033" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60535" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="580" r_length="359" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E285058" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59813" e_stop="60033"/>
          <exon e_start="60177" e_stop="60535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGT</genome_strand>
        <mrna_strand>CTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E265275" ref_strand="+" ref_description="SGN-E265275 	[cLEI-9-E24]">
      <seq>tgctactcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactggtgctgccaagattgcaggatttgcccttgccacttctgcccttgtggtctcaggagctaatgctgaatgagttccaaaacgtctaaccttcgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagctattccttcaagccaggcaaatacgacgcccagaagttctgcttagagccaacatgattcaccgtcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59514" stop="60670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59814" g_stop="60033" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60370" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="414" r_length="194" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E265275" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59814" e_stop="60033"/>
          <exon e_start="60177" e_stop="60370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAA</genome_strand>
        <mrna_strand>TGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGGTGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTGGTCTCA...............................................................................................................................................GGAGCTAATGCTGAATGAGTTCCAAAACGTCTAACCTTCGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTATTCCTTCAAGCCAGGCAAATACGACGCCCAGAAGTTCTGCTTAGAGCCAACATGATTCACCGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E284242" ref_strand="+" ref_description="SGN-E284242 	[cLER-16-M22]">
      <seq>tcttatgcaaccaactaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattganggaccgtttgaagtatcttctgatggcactgttaaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59520" stop="60797"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59820" g_stop="60033" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60497" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="535" r_length="321" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E284242" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59820" e_stop="60033"/>
          <exon e_start="60177" e_stop="60497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTT</genome_strand>
        <mrna_strand>TCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGANGGACCGTTTGAAGTATCTTCTGATGGCACTGTTAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E203266" ref_strand="+" ref_description="SGN-E203266 	[cLEB-3-G24]">
      <seq>gcacgagtaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgttactgtccagcttcctggtggtgagcgtgttccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59531" stop="60863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59826" g_stop="60033" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60563" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="593" r_length="387" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E203266" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59826" e_stop="60033"/>
          <exon e_start="60177" e_stop="60563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCG</genome_strand>
        <mrna_strand>GC-ACGA-GTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E277277" ref_strand="+" ref_description="SGN-E277277 	[cLEL-3-O22]">
      <seq>gcacgagtaaggttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaagccattcggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59531" stop="60523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59826" g_stop="60033" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60223" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="253" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E277277" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>255</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59826" e_stop="60033"/>
          <exon e_start="60177" e_stop="60223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGAT</genome_strand>
        <mrna_strand>GC-ACGA-GTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGCCATTCGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E345666" ref_strand="+" ref_description="SGN-E345666 	[cTOF-18-B9]">
      <seq>ttggtggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgttactgtccagcttcctggtggtgagcgtgttccgttcctcttcaccatcaaacaacttgtggcatctggaaagcctgagagcttcagtggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59540" stop="60921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59840" g_stop="60033" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60621" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="639" r_length="445" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E345666" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59840" e_stop="60033"/>
          <exon e_start="60177" e_stop="60621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCG</genome_strand>
        <mrna_strand>TTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E249623" ref_strand="+" ref_description="SGN-E249623 	[cLEF-56-K8]">
      <seq>ttggtggtgtctctgccagaaaccaacttgccattgaggtcagctcaaagtttgagccaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagcctgatcttaaagattttgctcagaaatgcacctgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagcctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaacctggaaccagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59540" stop="60613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59840" g_stop="60033" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60313" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="338" r_length="140" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E249623" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59840" e_stop="60033"/>
          <exon e_start="60177" e_stop="60313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTGGTGTCTCTGCCAGAAA-CAACTTGCCATTGAGGTCAGCTCAAAGTTTGAG-CAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAG-CTGATCTTAAAGATTTTGCTCAGAAATGCA-CTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAG-CTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAA-CTGGAA-CAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAA</genome_strand>
        <mrna_strand>TTGGTGGTGTCTCTGCCAGAAACCAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCCTGATCTTAAAGATTTTGCTCAGAAATGCACCTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACCTGGAACCAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E254831" ref_strand="+" ref_description="SGN-E254831 	[cLEG-33-D11]">
      <seq>tggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcggggcatgtggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgttactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59544" stop="60835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59844" g_stop="60033" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60535" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="549" r_length="359" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E254831" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59844" e_stop="60033"/>
          <exon e_start="60177" e_stop="60535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGT</genome_strand>
        <mrna_strand>TGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCGGGGCATGTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E256407" ref_strand="+" ref_description="SGN-E256407 	[cLEG-38-A4]">
      <seq>tggtgtctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgttagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59544" stop="60817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59844" g_stop="60033" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60517" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="531" r_length="341" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E256407" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59844" e_stop="60033"/>
          <exon e_start="60177" e_stop="60517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGA</genome_strand>
        <mrna_strand>TGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTTAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E321020" ref_strand="+" ref_description="SGN-E321020 	[cTOB-13-P7]">
      <seq>tctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaagagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcataccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaatgcagagggcgttagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgattacgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59549" stop="60824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59849" g_stop="60033" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60524" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="533" r_length="348" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E321020" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59849" e_stop="60033"/>
          <exon e_start="60177" e_stop="60524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCT</genome_strand>
        <mrna_strand>TCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................AGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCATACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAATGCAGAGGGCGTTAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E312090" ref_strand="+" ref_description="SGN-E312090 	[cTOA-11-M18]">
      <seq>tctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59549" stop="60798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59849" g_stop="60033" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60498" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="507" r_length="322" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E312090" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59849" e_stop="60033"/>
          <exon e_start="60177" e_stop="60498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTG</genome_strand>
        <mrna_strand>TCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E281807" ref_strand="+" ref_description="SGN-E281807 	[cLER-14-B20]">
      <seq>tctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59549" stop="60752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59849" g_stop="60033" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60452" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="461" r_length="276" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E281807" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59849" e_stop="60033"/>
          <exon e_start="60177" e_stop="60452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAG</genome_strand>
        <mrna_strand>TCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E312167" ref_strand="+" ref_description="SGN-E312167 	[cTOA-11-M22]">
      <seq>tctctgccagaaacaacttgccattgaggtcagctcaaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagtaccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagtaaaccagtgccctaccatagatggaggtgttgatagctttttcttcaagccaggcaaaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59549" stop="60626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59849" g_stop="60033" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60326" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="336" r_length="151" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E312167" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59849" e_stop="60033"/>
          <exon e_start="60177" e_stop="60326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGC-AAATAC</genome_strand>
        <mrna_strand>TCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTACCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGTAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTTCTTCAAGCCAGGCAAAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E313023" ref_strand="+" ref_description="SGN-E313023 	[cTOA-14-E3]">
      <seq>aaagtttgagcaaggcatttggtcttgaaccatctgcatccaagctttcttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59585" stop="60750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59885" g_stop="60033" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60450" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="423" r_length="274" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E313023" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59885" e_stop="60033"/>
          <exon e_start="60177" e_stop="60450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATG</genome_strand>
        <mrna_strand>AAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E249282" ref_strand="+" ref_description="SGN-E249282 	[cLEF-50-L2]">
      <seq>cttgctctttgcaagctgatcttaaagattttgctcagaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaagagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgttactgtccagcttcctggtggtgagcgtgttccgttcctcttcaccatcaaacaacttgtggcatctggaaagcctgagagcttcagtggcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59633" stop="60923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59933" g_stop="60033" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60623" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="548" r_length="447" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E249282" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59933" e_stop="60033"/>
          <exon e_start="60177" e_stop="60623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGAC</genome_strand>
        <mrna_strand>CTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................AGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E277654" ref_strand="+" ref_description="SGN-E277654 	[cLER-6-K14]">
      <seq>agaaatgcactgatgctgccaagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccgagaagttctgcttagagccaacatcattcaccgtcaatgcagagggcgtaagcaaaaattcagccccagacttgcaaatgaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgcttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59669" stop="60833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59969" g_stop="60033" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60533" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="422" r_length="357" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E277654" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59969" e_stop="60033"/>
          <exon e_start="60177" e_stop="60533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACT</genome_strand>
        <mrna_strand>AGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCGAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAATGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTGCAAATGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGCTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E296037" ref_strand="+" ref_description="SGN-E296037 	[cLET-27-J1]">
      <seq>gctgccaagattgcaggatttgcccttgccacttctgcccttgttggctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagcgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttgcaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59683" stop="60833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59983" g_stop="60033" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60533" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="408" r_length="357" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E296037" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59983" e_stop="60033"/>
          <exon e_start="60177" e_stop="60533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACT</genome_strand>
        <mrna_strand>GCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGGCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGCGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTGCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E296770" ref_strand="+" ref_description="SGN-E296770 	[cLET-26-I17]">
      <seq>aagattgcaggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgttactgtccagcttcctggtggtgagcgtgttccgttcctcttcaccatcaaacaacttgtggcatctggaaagcctgagagcttcagtggcgacttccttgtgccatcctacagaggttcatcgtttcttgacccaaaaggcaggggtggatccactggttacgacaatgctgttgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59689" stop="61009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59989" g_stop="60033" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60709" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="578" r_length="533" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E296770" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59989" e_stop="60033"/>
          <exon e_start="60177" e_stop="60709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGACCCAAAAGGCAGGGGTGGATCCACTGGTTACGACAATGCTGTTGCATT</genome_strand>
        <mrna_strand>AAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGACCCAAAAGGCAGGGGTGGATCCACTGGTTACGACAATGCTGTTGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E250429" ref_strand="+" ref_description="SGN-E250429 	[cLEG-6-D16]">
      <seq>caggatttgcccttgccacttctgcccttgttgtctcaggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggaagaaggggggatggaattgattacgctgctgttactgtccagcttcctggtggtgagcgtgttccgttcctcttcaccatcaaacaacttgtggcatctggaaagcctgagagcttcagtggcgacttccttgtgccatcctacagaggttcatcgtttcttgacccaaaaggcaggggtggatccactggttacgacaatgctgttgcattgccagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59696" stop="61016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59996" g_stop="60033" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60716" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="583" r_length="545" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E250429" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59996" e_stop="60033"/>
          <exon e_start="60177" e_stop="60716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCAGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGG-AGAA----GGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGACCCAAAAGGCAGGGGTGGATCCACTGGTTACGACAATGCTGTTGCATTGCCAGCT</genome_strand>
        <mrna_strand>CAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAAGAAGGGGGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGACCCAAAAGGCAGGGGTGGATCCACTGGTTACGACAATGCTGTTGCATTGCCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E343923" ref_strand="+" ref_description="SGN-E343923 	[cTOF-12-N6]">
      <seq>aggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgttactgtccagcttcctggtggtgagcgtgttccgttcctcttcaccatcaaacaacttgtggcatctggaaagcctgagagcttcagtggcgacttccttgtgccatcctacagaggttcatcgtttcttgacccaaaagcaggggtggatccactggttacgacaatgctgttgcattgccagctggaggcagaggagatgaggaggagctccagaaagagaacgtaaagaataccgcgtctttaacaggaaagatcacatttactgttaccaagagcaacccacaaactgntgaggtgattgggagtgtttgagagcattcagccatctgatactgatctgggggcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59877" stop="61179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60033" g_stop="60033" g_length="1"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1" r_length="1" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60177" g_stop="60879" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="704" r_length="703" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E343923" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60033" e_stop="60033"/>
          <exon e_start="60177" e_stop="60879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAAGTTAATAGTGTTTTGTTAAAACTGCTCATTTTTTGGAATGATTATCTTGTCATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGACCCAAAAGGCAGGGGTGGATCCACTGGTTACGACAATGCTGTTGCATTGCCAGCTGGAGGCAGAGGAGATGAGGAGGAGCTCCAGAAAGAGAACGTAAAGAATACCGCGTCTTTAACAGGAAAGATCACATTTACTGTTACCAAGAGCAACCCACAGACTGGTGAGGTGATT-GGAGTGTTTGAGAGCATTCAGCCATCTGATACTGATCTGGGGGCAA</genome_strand>
        <mrna_strand>A...............................................................................................................................................GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGACCCAAAA-GCAGGGGTGGATCCACTGGTTACGACAATGCTGTTGCATTGCCAGCTGGAGGCAGAGGAGATGAGGAGGAGCTCCAGAAAGAGAACGTAAAGAATACCGCGTCTTTAACAGGAAAGATCACATTTACTGTTACCAAGAGCAACCCACAAACTGNTGAGGTGATTGGGAGTGTTTGAGAGCATTCAGCCATCTGATACTGATCTGGGGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E346105" ref_strand="+" ref_description="SGN-E346105 	[cTOF-34-E7]">
      <seq>atctatagttcatgttcctttagttttgtgtccctttttcttttgatgtcctgtgtctaagagagaaatttgcaacttaatcatgtagggagctaatgctgaaggagttccaaaacgtctaacctttgatgagatccagagcaagacatacatggaagtaaagggaactggaacagcaaaccagtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgttactgtccagcttcctggtggtgagcgtgttccgttcctcttcaccatcaaacaacttgtggcatctggaaagcctgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59789" stop="60908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60089" g_stop="60608" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E346105" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60089" e_stop="60608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAG</genome_strand>
        <mrna_strand>ATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E292723" ref_strand="+" ref_description="SGN-E292723 	[cLET-11-J9]">
      <seq>aagggaactggaacagctaaccagggccctaccatagatggaggtgttgatagctttttcttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcatttaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgttactgtccagcttcctggtggtgagcgtgttccgttcctcttcaccatcaaacaacttgtggcatctggaaagcctgagagcttcagtggcgacttccttgtgccatcctacagaggttcatcgtttcttgacccaaaaggcaagggtggatccactggttacgacaatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59949" stop="61002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60249" g_stop="60702" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E292723" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60249" e_stop="60702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGACCCAAAAGGCAGGGGTGGATCCACTGGTTACGACAATGCTG</genome_strand>
        <mrna_strand>AAGGGAACTGGAACAGCTAACCAGGGCCCTACCATAGATGGAGGTGTTGATAGCTTTTTCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTTACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGACCCAAAAGGCAAGGGTGGATCCACTGGTTACGACAATGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E291965" ref_strand="+" ref_description="SGN-E291965 	[cLET-7-I8]">
      <seq>agtgccctaccatagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgttactgtccagcttcctggtggtgagcgtgttccgttcctcttcaccatcaaacaacttgtggcatctggaaagcctgagagcttcagtggcgacttccttgtgccatcctacagaggttcatcgtttcttgacccaaaaggcaggggtggatccactggttacgacaatgctgttgcattgccagctggaggcagaggagatgaggaggagctccagaaagagaacgtaaagaataccgcgtctttaacaggaaagatcacatttactgttaccaagagcaacccacagactggtgaggtgattggagtgtttgagagcattcagccatctgatactgatctgggggcaaagactcctaaggatgtaaaaatccagggtatctggtatgcccagcttgaatcatagacagatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59971" stop="61244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60271" g_stop="60944" g_length="674"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="674" r_length="674" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E291965" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60271" e_stop="60944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGACCCAAAAGGCAGGGGTGGATCCACTGGTTACGACAATGCTGTTGCATTGCCAGCTGGAGGCAGAGGAGATGAGGAGGAGCTCCAGAAAGAGAACGTAAAGAATACCGCGTCTTTAACAGGAAAGATCACATTTACTGTTACCAAGAGCAACCCACAGACTGGTGAGGTGATTGGAGTGTTTGAGAGCATTCAGCCATCTGATACTGATCTGGGGGCAAAGACTCCTAAGGATGTAAAAATCCAGGGTATCTGGTATGCCCAGCTTGAATCATAGACAGATCTT</genome_strand>
        <mrna_strand>AGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGACCCAAAAGGCAGGGGTGGATCCACTGGTTACGACAATGCTGTTGCATTGCCAGCTGGAGGCAGAGGAGATGAGGAGGAGCTCCAGAAAGAGAACGTAAAGAATACCGCGTCTTTAACAGGAAAGATCACATTTACTGTTACCAAGAGCAACCCACAGACTGGTGAGGTGATTGGAGTGTTTGAGAGCATTCAGCCATCTGATACTGATCTGGGGGCAAAGACTCCTAAGGATGTAAAAATCCAGGGTATCTGGTATGCCCAGCTTGAATCATAGACAGATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E348450" ref_strand="+" ref_description="SGN-E348450 	[cTOF-30-I23]">
      <seq>atagatggaggtgttgatagcttttccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgttactgtccagcttcctggtggtgagcgtgttccgttcctcttcaccatcaaacaacttgtggcatctggaaagcctgagagcttcagtggcgacttccttgtgccatcctacagaggttcatcgtttcttgacccaaaaggcagggggtggatccactggttacgacaatgctgttgcattgccagctggaggcagaggagatgaggaggagctccagaaagagaacgtaaagaataccgcgtctttaacaggaaagatcacatttactgttaccaagagcaacccacagactggtgaggtngattggagtgtttgagagcattcagccatctgatactgatctgggggcaaagactcctaaggatgtaaaaatccagggtnatctggtatgcccagcttgaatatagacagatcttangacttgtggatcatttcttcgtttttgattttgttataagttactacaaggtttcaactttctatgacccaattggataaagtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="59982" stop="61332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60282" g_stop="61032" g_length="751"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="753" r_length="753" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E348450" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60282" e_stop="61032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGACCCAAAAGGCA-GGGGTGGATCCACTGGTTACGACAATGCTGTTGCATTGCCAGCTGGAGGCAGAGGAGATGAGGAGGAGCTCCAGAAAGAGAACGTAAAGAATACCGCGTCTTTAACAGGAAAGATCACATTTACTGTTACCAAGAGCAACCCACAGACTGGTGAGGT-GATTGGAGTGTTTGAGAGCATTCAGCCATCTGATACTGATCTGGGGGCAAAGACTCCTAAGGATGTAAAAATCCAGGGT-ATCTGGTATGCCCAGCTTGAATCATAGACAGATCTTA-GACTTTGTGGATCATTTCTTCGTTTTTGATTTTGTTATAAGTTACTACAAGGTTTCAACTTTCTATGACCCAATTGGATAAGTAATG</genome_strand>
        <mrna_strand>ATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGACCCAAAAGGCAGGGGGTGGATCCACTGGTTACGACAATGCTGTTGCATTGCCAGCTGGAGGCAGAGGAGATGAGGAGGAGCTCCAGAAAGAGAACGTAAAGAATACCGCGTCTTTAACAGGAAAGATCACATTTACTGTTACCAAGAGCAACCCACAGACTGGTGAGGTNGATTGGAGTGTTTGAGAGCATTCAGCCATCTGATACTGATCTGGGGGCAAAGACTCCTAAGGATGTAAAAATCCAGGGTNATCTGGTATGCCCAGCTTGAAT-ATAGACAGATCTTANGAC-TTGTGGATCATTTCTTCGTTTTTGATTTTGTTATAAGTTACTACAAGGTTTCAACTTTCTATGACCCAATTGGATAAAGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E288651" ref_strand="+" ref_description="SGN-E288651 	[cLES-8-N15]">
      <seq>tccttcaagccaggcaaatacaacgccaagaagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgttactgtccagcttcctggtggtgagcgtgttccgttcctcttcaccatcaaacaacttgtggcatctggaaagcctgagagcttcagtggcgacttccttgtgccatcctacagaggttcatcgtttcttgacccaaaaggcaggggtggatccactggttacgacaatgctgttgcattgccagctggaggcagaggagatgaggaggagctccagaaagagaacgtaaagaataccgcgtctttaacaggaaagatcacatttactgttaccataagcaacccacagactggtgaggtgattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="60006" stop="61136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60306" g_stop="60836" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E288651" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60306" e_stop="60836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGACCCAAAAGGCAGGGGTGGATCCACTGGTTACGACAATGCTGTTGCATTGCCAGCTGGAGGCAGAGGAGATGAGGAGGAGCTCCAGAAAGAGAACGTAAAGAATACCGCGTCTTTAACAGGAAAGATCACATTTACTGTTACCAAGAGCAACCCACAGACTGGTGAGGTGATTGGA</genome_strand>
        <mrna_strand>TCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGACCCAAAAGGCAGGGGTGGATCCACTGGTTACGACAATGCTGTTGCATTGCCAGCTGGAGGCAGAGGAGATGAGGAGGAGCTCCAGAAAGAGAACGTAAAGAATACCGCGTCTTTAACAGGAAAGATCACATTTACTGTTACCATAAGCAACCCACAGACTGGTGAGGTGATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E286449" ref_strand="+" ref_description="SGN-E286449 	[cLES-12-I13]">
      <seq>aagttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgttactgtccagcttcctggtggtgagcgtgttccgttcctcttcaccatcaaacaacttgtggcatctggaaagcctgagagcttcagtggcgacttccttgtgccatcctacagaggttcatcgtttcttgacccaaaaggcaggggtggatccactggttacgacaatgctgttgcattgccagctggaggcagaggagatgaggaggagctccagaaagagaacgtaaagaataccgcgtctttaacaggaaagatcacatttactgttaccaagagcaacccacagactggtgaggtgattggagtgtttgagagcattcagccatctgatactgatctgggggcaaagactcctaaggatgtaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="60036" stop="61201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60336" g_stop="60901" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E286449" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60336" e_stop="60901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGACCCAAAAGGCAGGGGTGGATCCACTGGTTACGACAATGCTGTTGCATTGCCAGCTGGAGGCAGAGGAGATGAGGAGGAGCTCCAGAAAGAGAACGTAAAGAATACCGCGTCTTTAACAGGAAAGATCACATTTACTGTTACCAAGAGCAACCCACAGACTGGTGAGGTGATTGGAGTGTTTGAGAGCATTCAGCCATCTGATACTGATCTGGGGGCAAAGACTCCTAAGGATGTAAAAAT</genome_strand>
        <mrna_strand>AAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGACCCAAAAGGCAGGGGTGGATCCACTGGTTACGACAATGCTGTTGCATTGCCAGCTGGAGGCAGAGGAGATGAGGAGGAGCTCCAGAAAGAGAACGTAAAGAATACCGCGTCTTTAACAGGAAAGATCACATTTACTGTTACCAAGAGCAACCCACAGACTGGTGAGGTGATTGGAGTGTTTGAGAGCATTCAGCCATCTGATACTGATCTGGGGGCAAAGACTCCTAAGGATGTAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E295494" ref_strand="+" ref_description="SGN-E295494 	[cLET-23-I22]">
      <seq>gttctgcttagagccaacatcattcaccgtcaaggcagagggcgtaagcaaaaattcagccccagacttccaaaagaccaagcttatgactcgcttaacctacactttggatgagattgagggaccgtttgaagtatctcctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgttactgtccagcttcctggtggtgagcgtgttccgttcctcttcaccatcaaacaacttgtggcatctggaaagcctgagagcttcagtggcgacttccttgtgccatcctacagaggttcatcgtttcttgacccaaaaggcaggggtggatccactggttacgacaatgctgttgcattgccagctggaggcagaggagatgaggaggagctccagaaagagaacgtaaagaataccgcgtctttaacaggaaagatcacatttactgttaccaagagcaacccacagactggtgaggtgattggagtgtttgagagcattcagccatctgatactgatctgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="60038" stop="61175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60338" g_stop="60875" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E295494" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60338" e_stop="60875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGACCCAAAAGGCAGGGGTGGATCCACTGGTTACGACAATGCTGTTGCATTGCCAGCTGGAGGCAGAGGAGATGAGGAGGAGCTCCAGAAAGAGAACGTAAAGAATACCGCGTCTTTAACAGGAAAGATCACATTTACTGTTACCAAGAGCAACCCACAGACTGGTGAGGTGATTGGAGTGTTTGAGAGCATTCAGCCATCTGATACTGATCTGGGG</genome_strand>
        <mrna_strand>GTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGACCCAAAAGGCAGGGGTGGATCCACTGGTTACGACAATGCTGTTGCATTGCCAGCTGGAGGCAGAGGAGATGAGGAGGAGCTCCAGAAAGAGAACGTAAAGAATACCGCGTCTTTAACAGGAAAGATCACATTTACTGTTACCAAGAGCAACCCACAGACTGGTGAGGTGATTGGAGTGTTTGAGAGCATTCAGCCATCTGATACTGATCTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E577861" ref_strand="+" ref_description="SGN-E577861 	[LE08AF03]">
      <seq>tttttttttacaggaagatagttgtctcattacttatccaattgggtcatagaaagttgaaaccttgtagtaacttataacaaaatcaaaaacgaagaaatgatccacaaagtctaagatctgtctatgattcaagctgggcataccagataccctggatttttacatccttaggagtctttgcccccagatcagtatcagatggctgaatgctctcaaacactccaatcacctcaccagtctgtgggttgctcttggtaacagtaaatgtgatctttcctgttaaagacgcggtattctttacgttctctttctggagctcctcctcatctcctctgcctccagctggcaatgcaacagcattgtcgtaaccagtggatccacccctgccttttgggtcaagaaacgatgaacctctgtaggatggcacaaggaagtcgccactgaagctctcaggctttccagatgccacaagttgtttgatggtgaagaggaacggaacacgctcaccaccaggaagctggacagtaacagcagcgtaatcaattccatccttctcctcaaatttaacagtgccatcaggagatacttcaaacggtccctcaatctcatccaaagtgtaggttaagcgagtcataagcttggtcttttggaagtctggggctgaatttttgcttacgccctctgccttgacggagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="-" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="61353" stop="60058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61059" g_stop="60358" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="702" r_length="702" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="-" ref_id="SGN-E577861" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61059" e_stop="60358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATAATATACAGGAAGATAGTTGTCTCATTACTTATCCAATTGGGTCATAGAAAGTTGAAACCTTGTAGTAACTTATAACAAAATCAAAAACGAAGAAATGATCCACAAAGTCTAAGATCTGTCTATGATTCAAGCTGGGCATACCAGATACCCTGGATTTTTACATCCTTAGGAGTCTTTGCCCCCAGATCAGTATCAGATGGCTGAATGCTCTCAAACACTCCAATCACCTCACCAGTCTGTGGGTTGCTCTTGGTAACAGTAAATGTGATCTTTCCTGTTAAAGACGCGGTATTCTTTACGTTCTCTTTCTGGAGCTCCTCCTCATCTCCTCTGCCTCCAGCTGGCAATGCAACAGCATTGTCGTAACCAGTGGATCCACCCCTGCCTTTTGGGTCAAGAAACGATGAACCTCTGTAGGATGGCACAAGGAAGTCGCCACTGAAGCTCTCAGGCTTTCCAGATGCCACAAGTTGTTTGATGGTGAAGAGGAACGGAACACGCTCACCACCAGGAAGCTGGACAGTAACAGCAGCGTAATCAATTCCATCCTTCTCCTCAAATTTAACAGTGCCATCAGGAGATACTTCAAACGGTCCCTCAATCTCATCCAAAGTGTAGGTTAAGCGAGTCATAAGCTTGGTCTTTTGGAAGTCTGGGGCTGAATTTTTGCTTACGCCCTCTGCCTTGACGGTGAATG</genome_strand>
        <mrna_strand>TTTTTTTTTACAGGAAGATAGTTGTCTCATTACTTATCCAATTGGGTCATAGAAAGTTGAAACCTTGTAGTAACTTATAACAAAATCAAAAACGAAGAAATGATCCACAAAGTCTAAGATCTGTCTATGATTCAAGCTGGGCATACCAGATACCCTGGATTTTTACATCCTTAGGAGTCTTTGCCCCCAGATCAGTATCAGATGGCTGAATGCTCTCAAACACTCCAATCACCTCACCAGTCTGTGGGTTGCTCTTGGTAACAGTAAATGTGATCTTTCCTGTTAAAGACGCGGTATTCTTTACGTTCTCTTTCTGGAGCTCCTCCTCATCTCCTCTGCCTCCAGCTGGCAATGCAACAGCATTGTCGTAACCAGTGGATCCACCCCTGCCTTTTGGGTCAAGAAACGATGAACCTCTGTAGGATGGCACAAGGAAGTCGCCACTGAAGCTCTCAGGCTTTCCAGATGCCACAAGTTGTTTGATGGTGAAGAGGAACGGAACACGCTCACCACCAGGAAGCTGGACAGTAACAGCAGCGTAATCAATTCCATCCTTCTCCTCAAATTTAACAGTGCCATCAGGAGATACTTCAAACGGTCCCTCAATCTCATCCAAAGTGTAGGTTAAGCGAGTCATAAGCTTGGTCTTTTGGAAGTCTGGGGCTGAATTTTTGCTTACGCCCTCTGCCTTGACGGAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E372680" ref_strand="+" ref_description="SGN-E372680 	[TUS-31-K1]">
      <seq>tttttttttttttttttttaatggattattacttatacttgataatatacaggaagatagttgtctcattacttatccaattgggtcataaaaagttgaaaccttgtagtaacttataacaaaatcaaaaacgaagaaatgatccacaaagtctaagatctgtctatgattcaagctgggcataccaaataccctggatttttacatccttaggagtctttgcccccagatcagtatcaaatggctgaatgctctcaaacactccaatcacctcaccagtctgtgggttgctcttggtaacagtaaatgtgatctttcctgttaaagacgcggtattctttacgttctttttctggagctcctcctcatctcctctgcctccagctggcaatgcaacagcattgtcgtaaccagtggatccacccctgccttttgggtcaagaaacgatgaacctctgtaggatggcacaaggaagtcgccactgaagctctcaggctttccagatgccacaagttgtttgatggtgaagaggaacggaacacgctcaccaccaggaagctggacagtaacagcagcgtaatcaattccatccttctcctcaaatttaacagtgccatcaggagatacttcaaacggtccctcaatctcatccaaagtgtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="-" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="61385" stop="60137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61098" g_stop="60437" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="-" ref_id="SGN-E372680" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61098" e_stop="60437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCAACTCAGTATGTTAATGGATTATTACTTATACTTGATAATATACAGGAAGATAGTTGTCTCATTACTTATCCAATTGGGTCATAGAAAGTTGAAACCTTGTAGTAACTTATAACAAAATCAAAAACGAAGAAATGATCCACAAAGTCTAAGATCTGTCTATGATTCAAGCTGGGCATACCAGATACCCTGGATTTTTACATCCTTAGGAGTCTTTGCCCCCAGATCAGTATCAGATGGCTGAATGCTCTCAAACACTCCAATCACCTCACCAGTCTGTGGGTTGCTCTTGGTAACAGTAAATGTGATCTTTCCTGTTAAAGACGCGGTATTCTTTACGTTCTCTTTCTGGAGCTCCTCCTCATCTCCTCTGCCTCCAGCTGGCAATGCAACAGCATTGTCGTAACCAGTGGATCCACCCCTGCCTTTTGGGTCAAGAAACGATGAACCTCTGTAGGATGGCACAAGGAAGTCGCCACTGAAGCTCTCAGGCTTTCCAGATGCCACAAGTTGTTTGATGGTGAAGAGGAACGGAACACGCTCACCACCAGGAAGCTGGACAGTAACAGCAGCGTAATCAATTCCATCCTTCTCCTCAAATTTAACAGTGCCATCAGGAGATACTTCAAACGGTCCCTCAATCTCATCCAAAGTGTAG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTAATGGATTATTACTTATACTTGATAATATACAGGAAGATAGTTGTCTCATTACTTATCCAATTGGGTCATAAAAAGTTGAAACCTTGTAGTAACTTATAACAAAATCAAAAACGAAGAAATGATCCACAAAGTCTAAGATCTGTCTATGATTCAAGCTGGGCATACCAAATACCCTGGATTTTTACATCCTTAGGAGTCTTTGCCCCCAGATCAGTATCAAATGGCTGAATGCTCTCAAACACTCCAATCACCTCACCAGTCTGTGGGTTGCTCTTGGTAACAGTAAATGTGATCTTTCCTGTTAAAGACGCGGTATTCTTTACGTTCTTTTTCTGGAGCTCCTCCTCATCTCCTCTGCCTCCAGCTGGCAATGCAACAGCATTGTCGTAACCAGTGGATCCACCCCTGCCTTTTGGGTCAAGAAACGATGAACCTCTGTAGGATGGCACAAGGAAGTCGCCACTGAAGCTCTCAGGCTTTCCAGATGCCACAAGTTGTTTGATGGTGAAGAGGAACGGAACACGCTCACCACCAGGAAGCTGGACAGTAACAGCAGCGTAATCAATTCCATCCTTCTCCTCAAATTTAACAGTGCCATCAGGAGATACTTCAAACGGTCCCTCAATCTCATCCAAAGTGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E291760" ref_strand="+" ref_description="SGN-E291760 	[cLET-6-L8]">
      <seq>cctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgttactgtccagcttcctggtggtgagcgtgttccgttcctcttcaccatcaaacaacttgtggcatctggaaagcctgagagcttcagtggcgacttccttgtgccatcctacagaggttcatcgtttcttgacccaaaaggcaggggtggatccactggttacgacaatgctgttgcattgccagctggaggcagaggagatgaggaggagctccagaaagagaacgtaaagaataccgcgtctttaacaggaaagatcacatttactgttaccaagagcaacccacagactggtgaggtgattggagtgtttgagagcattcagccatctgatactgatctgggggcaaagactcctaaggatgtaaaaatccagggtatctggtatgcccagcttgaatcatagacagatcttagactttgtggatcatttcttcgtttttgattttgttataagttactacaaggtttcaactttctatgacccaattggataagtaatgagacaactatcttcctgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="60177" stop="61360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60477" g_stop="61060" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E291760" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60477" e_stop="61060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGACCCAAAAGGCAGGGGTGGATCCACTGGTTACGACAATGCTGTTGCATTGCCAGCTGGAGGCAGAGGAGATGAGGAGGAGCTCCAGAAAGAGAACGTAAAGAATACCGCGTCTTTAACAGGAAAGATCACATTTACTGTTACCAAGAGCAACCCACAGACTGGTGAGGTGATTGGAGTGTTTGAGAGCATTCAGCCATCTGATACTGATCTGGGGGCAAAGACTCCTAAGGATGTAAAAATCCAGGGTATCTGGTATGCCCAGCTTGAATCATAGACAGATCTTAGACTTTGTGGATCATTTCTTCGTTTTTGATTTTGTTATAAGTTACTACAAGGTTTCAACTTTCTATGACCCAATTGGATAAGTAATGAGACAACTATCTTCCTGTATATTATCAA</genome_strand>
        <mrna_strand>CCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGACCCAAAAGGCAGGGGTGGATCCACTGGTTACGACAATGCTGTTGCATTGCCAGCTGGAGGCAGAGGAGATGAGGAGGAGCTCCAGAAAGAGAACGTAAAGAATACCGCGTCTTTAACAGGAAAGATCACATTTACTGTTACCAAGAGCAACCCACAGACTGGTGAGGTGATTGGAGTGTTTGAGAGCATTCAGCCATCTGATACTGATCTGGGGGCAAAGACTCCTAAGGATGTAAAAATCCAGGGTATCTGGTATGCCCAGCTTGAATCATAGACAGATCTTAGACTTTGTGGATCATTTCTTCGTTTTTGATTTTGTTATAAGTTACTACAAGGTTTCAACTTTCTATGACCCAATTGGATAAGTAATGAGACAACTATCTTCCTGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E281078" ref_strand="+" ref_description="SGN-E281078 	[cLER-7-I13]">
      <seq>ctgatggcactgttaaatttgaggagaaggatggaattgattacgctgctgttactgtccagcttcctggtggtgagcgtgttccgttcctcttcaccatcaaacaacttgtggcatctggaaagcctgagagcttcagtggcgacttccttgtgccatcctacagaggttcatcgtttcttgacccaaaaggcaggggtggatccactggttacgacaatgctgttgcattgccagctggaggcagaggagatgaggaggagctccagaaagagaacgtaaagaataccgcgtctttaacaggaaagatcacatttactgttaccaagagcaacccacagactggtgaggtgattggagtgtttgagagcattcagccatctgatactgatctgggggcaaagactcctaaggatgtaaaaatccagggtatctggtatgcccagcttgaatcatagacagatcttagactttgtggatcatttcttcgtttttgattttgttataagttactacaaggtttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="60178" stop="61303"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60478" g_stop="61011" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E281078" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60478" e_stop="61011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGACCCAAAAGGCAGGGGTGGATCCACTGGTTACGACAATGCTGTTGCATTGCCAGCTGGAGGCAGAGGAGATGAGGAGGAGCTCCAGAAAGAGAACGTAAAGAATACCGCGTCTTTAACAGGAAAGATCACATTTACTGTTACCAAGAGCAACCCACAGACTGGTGAGGTGATTGGAGTGTTTGAGAGCATTCAGCCATCTGATACTGATCTGGGGGCAAAGACTCCTAAGGATGTAAAAATCCAGGGTATCTGGTATGCCCAGCTTGAATCATAGACAGATCTTAGACTTTGTGGATCATTTCTTCGTTTTTGATTTTGTTATAAGTTACTACAAGGTTTCAACTTTCTAT</genome_strand>
        <mrna_strand>CTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGACCCAAAAGGCAGGGGTGGATCCACTGGTTACGACAATGCTGTTGCATTGCCAGCTGGAGGCAGAGGAGATGAGGAGGAGCTCCAGAAAGAGAACGTAAAGAATACCGCGTCTTTAACAGGAAAGATCACATTTACTGTTACCAAGAGCAACCCACAGACTGGTGAGGTGATTGGAGTGTTTGAGAGCATTCAGCCATCTGATACTGATCTGGGGGCAAAGACTCCTAAGGATGTAAAAATCCAGGGTATCTGGTATGCCCAGCTTGAATCATAGACAGATCTTAGACTTTGTGGATCATTTCTTCGTTTTTGATTTTGTTATAAGTTACTACAAGGTTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E294080" ref_strand="+" ref_description="SGN-E294080 	[cLET-13-C10]">
      <seq>aaggatggtattgattacgctgctgttactgtccagcttcctggtggtgagcgtgttccgttcctcttcaccatcaaacaacttgtggcatctggaaagcctgagagcttcagtggcgacttccttgtgccatcctacagaggttcatcgtttcttgacccaaaaggcaggggtggatccactggttacgacaatgctgttgcattgccagctggaggcagaggagatgaggaggagctccagaaagagaacgtaaagaataccgcgtctttaacaggaaagatcacatttactgttaccaagagcaacccacagactggtgaggtgattggagtgtttgagagcattcagccatctaatactgatctgggggcaaagactcctaaggatgtaaaaatccagggtatctggtatgcccagcttgaatcatagacagatcttagactttgtggatcatttcttcgtttttgattttggtataagttactacaaggtttcaacttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="60204" stop="61306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60504" g_stop="61015" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E294080" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60504" e_stop="61015"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGACCCAAAAGGCAGGGGTGGATCCACTGGTTACGACAATGCTGTTGCATTGCCAGCTGGAGGCAGAGGAGATGAGGAGGAGCTCCAGAAAGAGAACGTAAAGAATACCGCGTCTTTAACAGGAAAGATCACATTTACTGTTACCAAGAGCAACCCACAGACTGGTGAGGTGATTGGAGTGTTTGAGAGCATTCAGCCATCTGATACTGATCTGGGGGCAAAGACTCCTAAGGATGTAAAAATCCAGGGTATCTGGTATGCCCAGCTTGAATCATAGACAGATCTTAGACTTTGTGGATCATTTCTTCGTTTTTGATTTTGTTATAAGTTACTACAAGGTTTCAACTTTCTATGACC</genome_strand>
        <mrna_strand>AAGGATGGTATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGACCCAAAAGGCAGGGGTGGATCCACTGGTTACGACAATGCTGTTGCATTGCCAGCTGGAGGCAGAGGAGATGAGGAGGAGCTCCAGAAAGAGAACGTAAAGAATACCGCGTCTTTAACAGGAAAGATCACATTTACTGTTACCAAGAGCAACCCACAGACTGGTGAGGTGATTGGAGTGTTTGAGAGCATTCAGCCATCTAATACTGATCTGGGGGCAAAGACTCCTAAGGATGTAAAAATCCAGGGTATCTGGTATGCCCAGCTTGAATCATAGACAGATCTTAGACTTTGTGGATCATTTCTTCGTTTTTGATTTTGGTATAAGTTACTACAAGGTTTCAACTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E265495" ref_strand="+" ref_description="SGN-E265495 	[cLEI-14-E8]">
      <seq>cgctgctgttactgtccagcttcctggtggtgagcgtgttccgttcctcttcaccatcaaacaacttgtggcatctggaaagcctgagagcttcagtggcgacttccttgtgccatcctacagaggttcatcgtttcttgacccaaaaggcaggggtggatccactggttacgacaatgctgttgcattgccagctggaggcagaggagatgaggaggagctccagaaagagaacgtaaagaataccgcgtctttaacaggaaagatcacatttactgttaccaagagcaacccacagactggtgaggtgattggagtgtttgacagcattcagccatctgatactgatctgggggcaaagactcctaaggatgtaaaaatccagggtatctggtatgcccagcttgaatcatagacagatcttatactttgtggatcatttcttcgtttttgattttgttataagttactacaaggtttcaactttctatgacccaattggataagtaatgagacaactatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="60221" stop="61345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60521" g_stop="61045" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E265495" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60521" e_stop="61045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGACCCAAAAGGCAGGGGTGGATCCACTGGTTACGACAATGCTGTTGCATTGCCAGCTGGAGGCAGAGGAGATGAGGAGGAGCTCCAGAAAGAGAACGTAAAGAATACCGCGTCTTTAACAGGAAAGATCACATTTACTGTTACCAAGAGCAACCCACAGACTGGTGAGGTGATTGGAGTGTTTGAGAGCATTCAGCCATCTGATACTGATCTGGGGGCAAAGACTCCTAAGGATGTAAAAATCCAGGGTATCTGGTATGCCCAGCTTGAATCATAGACAGATCTTAGACTTTGTGGATCATTTCTTCGTTTTTGATTTTGTTATAAGTTACTACAAGGTTTCAACTTTCTATGACCCAATTGGATAAGTAATGAGACAACTATCTT</genome_strand>
        <mrna_strand>CGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGACCCAAAAGGCAGGGGTGGATCCACTGGTTACGACAATGCTGTTGCATTGCCAGCTGGAGGCAGAGGAGATGAGGAGGAGCTCCAGAAAGAGAACGTAAAGAATACCGCGTCTTTAACAGGAAAGATCACATTTACTGTTACCAAGAGCAACCCACAGACTGGTGAGGTGATTGGAGTGTTTGACAGCATTCAGCCATCTGATACTGATCTGGGGGCAAAGACTCCTAAGGATGTAAAAATCCAGGGTATCTGGTATGCCCAGCTTGAATCATAGACAGATCTTATACTTTGTGGATCATTTCTTCGTTTTTGATTTTGTTATAAGTTACTACAAGGTTTCAACTTTCTATGACCCAATTGGATAAGTAATGAGACAACTATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E293165" ref_strand="+" ref_description="SGN-E293165 	[cLET-12-F12]">
      <seq>gcttcctggtggtgaagcgtgttccgttcctcttcaccatcaaacaacttgtggcatctggaaagcctgagagcttcagtggcgacttccttgtgccatcctacagaggttcatcgtttcttgacccaaaaggcaggggtggatccactggttacgacaatgctgttgcattgccagctggaggcagaggagatgaggaggagctccagaaagagaacgtaaagaataccgcgtctttaacaggaaagatcacatttactgttaccaagagcaacccacagactggtgaggtgattggagtgtttgagagcattcagccatctnatactgatctgggggcaaagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="60239" stop="61183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60539" g_stop="60883" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E293165" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60539" e_stop="60883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCCTGGTGGTG-AGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGACCCAAAAGGCAGGGGTGGATCCACTGGTTACGACAATGCTGTTGCATTGCCAGCTGGAGGCAGAGGAGATGAGGAGGAGCTCCAGAAAGAGAACGTAAAGAATACCGCGTCTTTAACAGGAAAGATCACATTTACTGTTACCAAGAGCAACCCACAGACTGGTGAGGTGATTGGAGTGTTTGAGAGCATTCAGCCATCTGATACTGATCTGGGGGCAAAGAC</genome_strand>
        <mrna_strand>GCTTCCTGGTGGTGAAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGACCCAAAAGGCAGGGGTGGATCCACTGGTTACGACAATGCTGTTGCATTGCCAGCTGGAGGCAGAGGAGATGAGGAGGAGCTCCAGAAAGAGAACGTAAAGAATACCGCGTCTTTAACAGGAAAGATCACATTTACTGTTACCAAGAGCAACCCACAGACTGGTGAGGTGATTGGAGTGTTTGAGAGCATTCAGCCATCTNATACTGATCTGGGGGCAAAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E299409" ref_strand="+" ref_description="SGN-E299409 	[cLET-43-I22]">
      <seq>ggtgagcgtgttccgttcctcttcaccatcaaacaacttgtggcatctggaaagcctgagagcttcagtggcgacttccttgtgccatcctacagaggttcatcgtttcttgacccaaaaggcaggggtggatccactggttacgacaatgctgttgcattgccagctggaggcagaggagatgaggaggagctccagaaagagaacgtaaagaataccgcgtctttaacaggaaagatcacatttactgttaccaagagcaacccacagactggtgaggtgattggagtgtttgagagcattcagccatctgatactgatctgggggcaaagactcctaaggatgtaaaaatccagggtatctggtatgcccagcttgaatcatagacagatcttagactttgtggatcatttcttcgtttttgattttgttataagttactacaaggtttcaactttctatgacccaattggataagtaatgagacaactatcttcctgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="60249" stop="61360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60549" g_stop="61060" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E299409" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60549" e_stop="61060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGACCCAAAAGGCAGGGGTGGATCCACTGGTTACGACAATGCTGTTGCATTGCCAGCTGGAGGCAGAGGAGATGAGGAGGAGCTCCAGAAAGAGAACGTAAAGAATACCGCGTCTTTAACAGGAAAGATCACATTTACTGTTACCAAGAGCAACCCACAGACTGGTGAGGTGATTGGAGTGTTTGAGAGCATTCAGCCATCTGATACTGATCTGGGGGCAAAGACTCCTAAGGATGTAAAAATCCAGGGTATCTGGTATGCCCAGCTTGAATCATAGACAGATCTTAGACTTTGTGGATCATTTCTTCGTTTTTGATTTTGTTATAAGTTACTACAAGGTTTCAACTTTCTATGACCCAATTGGATAAGTAATGAGACAACTATCTTCCTGTATATTATCAA</genome_strand>
        <mrna_strand>GGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGACCCAAAAGGCAGGGGTGGATCCACTGGTTACGACAATGCTGTTGCATTGCCAGCTGGAGGCAGAGGAGATGAGGAGGAGCTCCAGAAAGAGAACGTAAAGAATACCGCGTCTTTAACAGGAAAGATCACATTTACTGTTACCAAGAGCAACCCACAGACTGGTGAGGTGATTGGAGTGTTTGAGAGCATTCAGCCATCTGATACTGATCTGGGGGCAAAGACTCCTAAGGATGTAAAAATCCAGGGTATCTGGTATGCCCAGCTTGAATCATAGACAGATCTTAGACTTTGTGGATCATTTCTTCGTTTTTGATTTTGTTATAAGTTACTACAAGGTTTCAACTTTCTATGACCCAATTGGATAAGTAATGAGACAACTATCTTCCTGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E229163" ref_strand="+" ref_description="SGN-E229163 	[cLEL-29-I17]">
      <seq>ttttttttttttttttttgcaactcagtatgttaatggattattacttatacttgataatatacaggaagatagttgtctcattacttatccaattgggtcatagaaagttgaaaccttgtagtaacttataacaaaatcaaaaacgaagaaatgatccacaaagtctaagatctgtctatgattcaagctgggcataccagataccctggatttttacatccttaggagtctttgcccccagatcagtatcagatggctgaatgctctcaaacactccaatcacctcaccagtctgtgggttgctcttggtaacagtaaatgtgatctttcctgttaaagacgcggtattctttacgttctctttctggagctcctcctcatctcctctgcctccagctggcaatgcaacagcattgtcgtaacccagnggagccacccctgccttttgggtcaagaaacgatgaacctttgtaggatggcacaagggaagtcgccactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="-" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="77228" stop="60314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61112" g_stop="60614" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="-" ref_id="SGN-E229163" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61112" e_stop="60614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTACATATCAGCATTTTGCAACTCAGTATGTTAATGGATTATTACTTATACTTGATAATATACAGGAAGATAGTTGTCTCATTACTTATCCAATTGGGTCATAGAAAGTTGAAACCTTGTAGTAACTTATAACAAAATCAAAAACGAAGAAATGATCCACAAAGTCTAAGATCTGTCTATGATTCAAGCTGGGCATACCAGATACCCTGGATTTTTACATCCTTAGGAGTCTTTGCCCCCAGATCAGTATCAGATGGCTGAATGCTCTCAAACACTCCAATCACCTCACCAGTCTGTGGGTTGCTCTTGGTAACAGTAAATGTGATCTTTCCTGTTAAAGACGCGGTATTCTTTACGTTCTCTTTCTGGAGCTCCTCCTCATCTCCTCTGCCTCCAGCTGGCAATGCAACAGCATTGTCGTAA-CCAGTGGATCCACCCCTGCCTTTTGGGTCAAGAAACGATGAACCTCTGTAGGATGGCACAA-GGAAGTCGCCACTG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTGCAACTCAGTATGTTAATGGATTATTACTTATACTTGATAATATACAGGAAGATAGTTGTCTCATTACTTATCCAATTGGGTCATAGAAAGTTGAAACCTTGTAGTAACTTATAACAAAATCAAAAACGAAGAAATGATCCACAAAGTCTAAGATCTGTCTATGATTCAAGCTGGGCATACCAGATACCCTGGATTTTTACATCCTTAGGAGTCTTTGCCCCCAGATCAGTATCAGATGGCTGAATGCTCTCAAACACTCCAATCACCTCACCAGTCTGTGGGTTGCTCTTGGTAACAGTAAATGTGATCTTTCCTGTTAAAGACGCGGTATTCTTTACGTTCTCTTTCTGGAGCTCCTCCTCATCTCCTCTGCCTCCAGCTGGCAATGCAACAGCATTGTCGTAACCCAGNGGAGCCACCCCTGCCTTTTGGGTCAAGAAACGATGAACCTTTGTAGGATGGCACAAGGGAAGTCGCCACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E292305" ref_strand="-" ref_description="SGN-E292305 	[cLET-1-K13]">
      <seq>gcgacttccttgtgccatcctacagaggttcatcgtttcttgacccaaaaggcaggggtggatccactggttaagacaatgctgttgcattgccagctggaggcaaaggagatgagcaggagctccagaaagagaacgtaaagaataccgcgtctttaacaggaaagatcccatttactgttaccaaaagcaacccccagactggtgaggtgattgaagtgtttgaaagcattcagccatctgaaactgatctgggggcaaagcctcctaaggatgtaaaaatccagggtatttggtatgcccagcttgaatcatagacagatcttagactttgtggatcatttcttcgttttcgattttgttataagtgactacaaggtttcaactttctatgacccaattggataagtaatgagacaactatcttcctgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="60319" stop="61373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60619" g_stop="61050" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="433" polyA_stop="461"/>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E292305" ref_strand="-">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292305" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="60619" e_stop="61050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGACCCAAAAGGCAGGGGTGGATCCACTGGTTACGACAATGCTGTTGCATTGCCAGCTGGAGGCAGAGGAGATGAGGAGGAGCTCCAGAAAGAGAACGTAAAGAATACCGCGTCTTTAACAGGAAAGATCACATTTACTGTTACCAAGAGCAACCCACAGACTGGTGAGGTGATTGGAGTGTTTGAGAGCATTCAGCCATCTGATACTGATCTGGGGGCAAAGACTCCTAAGGATGTAAAAATCCAGGGTATCTGGTATGCCCAGCTTGAATCATAGACAGATCTTAGACTTTGTGGATCATTTCTTCGTTTTTGATTTTGTTATAAGTTACTACAAGGTTTCAACTTTCTATGACCCAATTGGATAAGTAATGAGACAACTATCTTCCTGT</genome_strand>
        <mrna_strand>GCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGACCCAAAAGGCAGGGGTGGATCCACTGGTTAAGACAATGCTGTTGCATTGCCAGCTGGAGGCAAAGGAGATGAGCAGGAGCTCCAGAAAGAGAACGTAAAGAATACCGCGTCTTTAACAGGAAAGATCCCATTTACTGTTACCAAAAGCAACCCCCAGACTGGTGAGGTGATTGAAGTGTTTGAAAGCATTCAGCCATCTGAAACTGATCTGGGGGCAAAGCCTCCTAAGGATGTAAAAATCCAGGGTATTTGGTATGCCCAGCTTGAATCATAGACAGATCTTAGACTTTGTGGATCATTTCTTCGTTTTCGATTTTGTTATAAGTGACTACAAGGTTTCAACTTTCTATGACCCAATTGGATAAGTAATGAGACAACTATCTTCCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E217740" ref_strand="-" ref_description="SGN-E217740 	[cLEL-25-K23]">
      <seq>gacaatgctgttgcattgccagctggaggcagaggagatgaggaggagctccagaaagagaacgtaaagaataccgcgtctttaacaggaaagatcacatttactgttaccaagagcaacccacagactggtgaggtgattggagtgtttgagagcattcagccatctgatactgatctgggggcaaagactcctaaggatgtaaaaatccagggtatctggtatgcccagcttgaatcatagacagatcttagactttgtggatcatttcttcgtttttgattttgttataagttactacaaggtttcaactttctatgacccaattggataagtaatgagacaactatcttcctgtaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="60393" stop="61373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60693" g_stop="61074" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E217740" ref_strand="-">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217740" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="60693" e_stop="61074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAATGCTGTTGCATTGCCAGCTGGAGGCAGAGGAGATGAGGAGGAGCTCCAGAAAGAGAACGTAAAGAATACCGCGTCTTTAACAGGAAAGATCACATTTACTGTTACCAAGAGCAACCCACAGACTGGTGAGGTGATTGGAGTGTTTGAGAGCATTCAGCCATCTGATACTGATCTGGGGGCAAAGACTCCTAAGGATGTAAAAATCCAGGGTATCTGGTATGCCCAGCTTGAATCATAGACAGATCTTAGACTTTGTGGATCATTTCTTCGTTTTTGATTTTGTTATAAGTTACTACAAGGTTTCAACTTTCTATGACCCAATTGGATAAGTAATGAGACAACTATCTTCCTGTATATTATCAAGTATAAGTAATAAT</genome_strand>
        <mrna_strand>GACAATGCTGTTGCATTGCCAGCTGGAGGCAGAGGAGATGAGGAGGAGCTCCAGAAAGAGAACGTAAAGAATACCGCGTCTTTAACAGGAAAGATCACATTTACTGTTACCAAGAGCAACCCACAGACTGGTGAGGTGATTGGAGTGTTTGAGAGCATTCAGCCATCTGATACTGATCTGGGGGCAAAGACTCCTAAGGATGTAAAAATCCAGGGTATCTGGTATGCCCAGCTTGAATCATAGACAGATCTTAGACTTTGTGGATCATTTCTTCGTTTTTGATTTTGTTATAAGTTACTACAAGGTTTCAACTTTCTATGACCCAATTGGATAAGTAATGAGACAACTATCTTCCTGTAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E228683" ref_strand="+" ref_description="SGN-E228683 	[cLEL-29-I17]">
      <seq>tttttttttttttttttggcaactcagtatgttaatggattattacttatacttgataatatacaggaagatagttgtctcattacttatccaattgggtcatagaaagttgaaaccttgtagtaacttataacaaaatcaaaaacgaagaaatgatccacaaagtctaagatctgtctatgattcaagctgggcataccagataccctggatttttacatccttaggagtctttgcccccagatcagtatcagatggctgaatgctctcaaacactccaatcacctcaccagtctgtgggttgctcttggtaacagtaaatgtgatctttcctgttaaagacgcggtattctttacgttctctttctggagctcctccttatctcctttgcctccagctggcaatgcaacagcattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="-" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="77228" stop="60394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61112" g_stop="60694" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="-" ref_id="SGN-E228683" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61112" e_stop="60694"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTACATATCAGCATTTTGCAACTCAGTATGTTAATGGATTATTACTTATACTTGATAATATACAGGAAGATAGTTGTCTCATTACTTATCCAATTGGGTCATAGAAAGTTGAAACCTTGTAGTAACTTATAACAAAATCAAAAACGAAGAAATGATCCACAAAGTCTAAGATCTGTCTATGATTCAAGCTGGGCATACCAGATACCCTGGATTTTTACATCCTTAGGAGTCTTTGCCCCCAGATCAGTATCAGATGGCTGAATGCTCTCAAACACTCCAATCACCTCACCAGTCTGTGGGTTGCTCTTGGTAACAGTAAATGTGATCTTTCCTGTTAAAGACGCGGTATTCTTTACGTTCTCTTTCTGGAGCTCCTCCTCATCTCCTCTGCCTCCAGCTGGCAATGCAACAGCATTGT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTGGCAACTCAGTATGTTAATGGATTATTACTTATACTTGATAATATACAGGAAGATAGTTGTCTCATTACTTATCCAATTGGGTCATAGAAAGTTGAAACCTTGTAGTAACTTATAACAAAATCAAAAACGAAGAAATGATCCACAAAGTCTAAGATCTGTCTATGATTCAAGCTGGGCATACCAGATACCCTGGATTTTTACATCCTTAGGAGTCTTTGCCCCCAGATCAGTATCAGATGGCTGAATGCTCTCAAACACTCCAATCACCTCACCAGTCTGTGGGTTGCTCTTGGTAACAGTAAATGTGATCTTTCCTGTTAAAGACGCGGTATTCTTTACGTTCTCTTTCTGGAGCTCCTCCTTATCTCCTTTGCCTCCAGCTGGCAATGCAACAGCATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E219397" ref_strand="-" ref_description="SGN-E219397 	[cLEL-11-J12]">
      <seq>aatgctgtttgcattgccagctggaggcagagaagatgaggaggagctccagaaagagaacgtaaagaataccgcgtctttaacaggaaagatcacatttactgttaccaagagcaacccacagactggtgaggtgattggagtgtttgagagcattcagccatctgatactgatctgggggcaaagactcctaaggatgtaaaaatccagggtatctggtatgcccagcttgaatcatagacagatcttagactttgtggatcatttcttggtttttgattttgttataagttactacaaggtttcaactttctatgacccaattggataagtaatgagacaactatcttcctgtatattaccaagtataagtaataatccattaacatatattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="60396" stop="61398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60696" g_stop="61082" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="396" polyA_stop="407"/>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E219397" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219397" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="60696" e_stop="61082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCTG-TTGCATTGCCAGCTGGAGGCAGAGGAGATGAGGAGGAGCTCCAGAAAGAGAACGTAAAGAATACCGCGTCTTTAACAGGAAAGATCACATTTACTGTTACCAAGAGCAACCCACAGACTGGTGAGGTGATTGGAGTGTTTGAGAGCATTCAGCCATCTGATACTGATCTGGGGGCAAAGACTCCTAAGGATGTAAAAATCCAGGGTATCTGGTATGCCCAGCTTGAATCATAGACAGATCTTAGACTTTGTGGATCATTTCTTCGTTTTTGATTTTGTTATAAGTTACTACAAGGTTTCAACTTTCTATGACCCAATTGGATAAGTAATGAGACAACTATCTTCCTGTATATTATCAAGTATAAGTAATAATCCATTAAC</genome_strand>
        <mrna_strand>AATGCTGTTTGCATTGCCAGCTGGAGGCAGAGAAGATGAGGAGGAGCTCCAGAAAGAGAACGTAAAGAATACCGCGTCTTTAACAGGAAAGATCACATTTACTGTTACCAAGAGCAACCCACAGACTGGTGAGGTGATTGGAGTGTTTGAGAGCATTCAGCCATCTGATACTGATCTGGGGGCAAAGACTCCTAAGGATGTAAAAATCCAGGGTATCTGGTATGCCCAGCTTGAATCATAGACAGATCTTAGACTTTGTGGATCATTTCTTGGTTTTTGATTTTGTTATAAGTTACTACAAGGTTTCAACTTTCTATGACCCAATTGGATAAGTAATGAGACAACTATCTTCCTGTATATTACCAAGTATAAGTAATAATCCATTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E217594" ref_strand="-" ref_description="SGN-E217594 	[cLEL-25-I7]">
      <seq>tgctgttgcattgccagctggaggcagaggagatgaggaggagctccagaaagagaacgtaaagaataccgcgtctttaacaggaaagatcacatttatctgttaccaagagcaacccacagactggtgaggtgattggagtgtttgagagcattcagccatctgatactgatctgggggcaaagactcctaaggatgtaaaaatccagggtatctggtatgcccagcttgaatcatagacagatcttagactttgtggatcatttcttcgtttttgattttgttataagttactacaaggtttcaactttctatgacccaattggataagtaatgagacaactatcttcctgtaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="60398" stop="61373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60698" g_stop="61050" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="355" polyA_stop="381"/>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E217594" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217594" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="60698" e_stop="61050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTGTTGCATTGCCAGCTGGAGGCAGAGGAGATGAGGAGGAGCTCCAGAAAGAGAACGTAAAGAATACCGCGTCTTTAACAGGAAAGATCACATTTA-CTGTTACCAAGAGCAACCCACAGACTGGTGAGGTGATTGGAGTGTTTGAGAGCATTCAGCCATCTGATACTGATCTGGGGGCAAAGACTCCTAAGGATGTAAAAATCCAGGGTATCTGGTATGCCCAGCTTGAATCATAGACAGATCTTAGACTTTGTGGATCATTTCTTCGTTTTTGATTTTGTTATAAGTTACTACAAGGTTTCAACTTTCTATGACCCAATTGGATAAGTAATGAGACAACTATCTTCCTGT</genome_strand>
        <mrna_strand>TGCTGTTGCATTGCCAGCTGGAGGCAGAGGAGATGAGGAGGAGCTCCAGAAAGAGAACGTAAAGAATACCGCGTCTTTAACAGGAAAGATCACATTTATCTGTTACCAAGAGCAACCCACAGACTGGTGAGGTGATTGGAGTGTTTGAGAGCATTCAGCCATCTGATACTGATCTGGGGGCAAAGACTCCTAAGGATGTAAAAATCCAGGGTATCTGGTATGCCCAGCTTGAATCATAGACAGATCTTAGACTTTGTGGATCATTTCTTCGTTTTTGATTTTGTTATAAGTTACTACAAGGTTTCAACTTTCTATGACCCAATTGGATAAGTAATGAGACAACTATCTTCCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E285572" ref_strand="+" ref_description="SGN-E285572 	[cLES-5-E19]">
      <seq>tgcattgccagctggaggcagaggagatgaggaggagctccagaaagagaacgtaaagaataccgcgtctttaacaggaaagatcacatttactgttaccaagagcaacccacagactggtgaggtgattggagtgtttgagagcattcagccatctgatactgatctgggggcaaagactcctaaggatgtaaaaatccagggtatctggtatgcccagcttgaatcatagacagatcttagactttgtggatcatttcttcgtttttgattttgttataagttactacaaggtttcaactttctatgacccaattggataagtaatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="60404" stop="61338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60704" g_stop="61042" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E285572" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60704" e_stop="61042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTGCCAGCTGGAGGCAGAGGAGATGAGGAGGAGCTCCAGAAAGAGAACGTAAAGAATACCGCGTCTTTAACAGGAAAGATCACATTTACTGTTACCAAGAGCAACCCACAGACTGGTGAGGTGATTGGAGTGTTTGAGAGCATTCAGCCATCTGATACTGATCTGGGGGCAAAGACTCCTAAGGATGTAAAAATCCAGGGTATCTGGTATGCCCAGCTTGAATCATAGACAGATCTTAGACTTTGTGGATCATTTCTTCGTTTTTGATTTTGTTATAAGTTACTACAAGGTTTCAACTTTCTATGACCCAATTGGATAAGTAATGAGACAACTAT</genome_strand>
        <mrna_strand>TGCATTGCCAGCTGGAGGCAGAGGAGATGAGGAGGAGCTCCAGAAAGAGAACGTAAAGAATACCGCGTCTTTAACAGGAAAGATCACATTTACTGTTACCAAGAGCAACCCACAGACTGGTGAGGTGATTGGAGTGTTTGAGAGCATTCAGCCATCTGATACTGATCTGGGGGCAAAGACTCCTAAGGATGTAAAAATCCAGGGTATCTGGTATGCCCAGCTTGAATCATAGACAGATCTTAGACTTTGTGGATCATTTCTTCGTTTTTGATTTTGTTATAAGTTACTACAAGGTTTCAACTTTCTATGACCCAATTGGATAAGTAATGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E218648" ref_strand="+" ref_description="SGN-E218648 	[cLEL-18-M20]">
      <seq>ttttttttttttttttttatacttgataatatacaggaagatagttgtctcattacttatccaattgggtcatagaaagttgaaaccttgtagtaacttataacaaaatcaaaaacgaagaaatgatccacaaagtctaagatctgtctatgattcaagctgggcataccagataccctggatttttacatccttaggagtctttgcccccagatcagtatcagatggctgaatgctctcaaacactccaatcacctcaccagtctgtgggttgctcttggtaacagtaaatgtgatctttcctgttaaagacgcggtattttttacgttctctttctggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="-" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="61373" stop="60440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61082" g_stop="60740" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="-" ref_id="SGN-E218648" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61082" e_stop="60740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAATGGATTATTACTTATACTTGATAATATACAGGAAGATAGTTGTCTCATTACTTATCCAATTGGGTCATAGAAAGTTGAAACCTTGTAGTAACTTATAACAAAATCAAAAACGAAGAAATGATCCACAAAGTCTAAGATCTGTCTATGATTCAAGCTGGGCATACCAGATACCCTGGATTTTTACATCCTTAGGAGTCTTTGCCCCCAGATCAGTATCAGATGGCTGAATGCTCTCAAACACTCCAATCACCTCACCAGTCTGTGGGTTGCTCTTGGTAACAGTAAATGTGATCTTTCCTGTTAAAGACGCGGTATTCTTTACGTTCTCTTTCTGGAGC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTATACTTGATAATATACAGGAAGATAGTTGTCTCATTACTTATCCAATTGGGTCATAGAAAGTTGAAACCTTGTAGTAACTTATAACAAAATCAAAAACGAAGAAATGATCCACAAAGTCTAAGATCTGTCTATGATTCAAGCTGGGCATACCAGATACCCTGGATTTTTACATCCTTAGGAGTCTTTGCCCCCAGATCAGTATCAGATGGCTGAATGCTCTCAAACACTCCAATCACCTCACCAGTCTGTGGGTTGCTCTTGGTAACAGTAAATGTGATCTTTCCTGTTAAAGACGCGGTATTTTTTACGTTCTCTTTCTGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E296850" ref_strand="+" ref_description="SGN-E296850 	[cLET-26-F12]">
      <seq>ttttttttacaggaagatagttgtctcattacttatccaattgggtcatagaaagttgaaaccttgtagtaacttataacaaaatcaaaaacgaagaaatgatccacaaagtctaagatctgtctatgattcaagctgggcataccagataccctggatttttacatccttaggagtctttgcccccagatcagtatcagatggctgaatgctctcaaacactccaatcacctcaccagtctgtgggttgctcttggtaacagtaaatgtgatctttcctgttaaagacgcggtattctttacgttctctttctggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="-" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="61353" stop="60440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61058" g_stop="60740" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="-" ref_id="SGN-E296850" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61058" e_stop="60740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAATATACAGGAAGATAGTTGTCTCATTACTTATCCAATTGGGTCATAGAAAGTTGAAACCTTGTAGTAACTTATAACAAAATCAAAAACGAAGAAATGATCCACAAAGTCTAAGATCTGTCTATGATTCAAGCTGGGCATACCAGATACCCTGGATTTTTACATCCTTAGGAGTCTTTGCCCCCAGATCAGTATCAGATGGCTGAATGCTCTCAAACACTCCAATCACCTCACCAGTCTGTGGGTTGCTCTTGGTAACAGTAAATGTGATCTTTCCTGTTAAAGACGCGGTATTCTTTACGTTCTCTTTCTGGAGC</genome_strand>
        <mrna_strand>TTTTTTTTACAGGAAGATAGTTGTCTCATTACTTATCCAATTGGGTCATAGAAAGTTGAAACCTTGTAGTAACTTATAACAAAATCAAAAACGAAGAAATGATCCACAAAGTCTAAGATCTGTCTATGATTCAAGCTGGGCATACCAGATACCCTGGATTTTTACATCCTTAGGAGTCTTTGCCCCCAGATCAGTATCAGATGGCTGAATGCTCTCAAACACTCCAATCACCTCACCAGTCTGTGGGTTGCTCTTGGTAACAGTAAATGTGATCTTTCCTGTTAAAGACGCGGTATTCTTTACGTTCTCTTTCTGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E277227" ref_strand="+" ref_description="SGN-E277227 	[cLEL-3-I5]">
      <seq>ttttttttttttttttttgtttttgggggaggattatagttgtctcattcgttatccaattgggtcatagaaagttgaaaccttgtagtaacttataacaaaatcaaaaacgaagaaatgatccacaaagtctaagatctgtctatgattcaagctgggcataccagataccctggatttttacatccttaggagtctttgcccccagatcagtatcagatggctgaatgctctcaaacactccaatcacctcaccagtctgtgggttgctcttggtaacagtaaatgtgatctttcctgttaaagacgcggtattcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="-" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="80248" stop="60457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61344" g_stop="61319" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.500"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61318" i_stop="61259" i_length="60">
            <donor d_prob="0.745" d_score="0.00"/>
            <acceptor a_prob="0.935" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61258" g_stop="61254" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="31" r_length="5" r_score="0.400"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61253" i_stop="61047" i_length="207">
            <donor d_prob="0.821" d_score="0.00"/>
            <acceptor a_prob="0.876" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61046" g_stop="60757" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="321" r_length="290" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="-" ref_id="SGN-E277227" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61344" e_stop="61319"/>
          <exon e_start="61258" e_stop="61254"/>
          <exon e_start="61046" e_stop="60757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTCAATTGTCAGATTGGTACTTGGTAAGGATCACCATTTCATAGCCTTATCTGGATGTAGTAGTATTTGACATCTCTCAACAGGATGGGTAAGTGTCTGAGACTCATTAGATGGATCACTCAACAATACTTACCGCTGCCAAATACAGAGACAGATTCGACGATTATATCAGAGTCTAGGCAAGCATACAACTTTTTACTTTCTTGAGATGGAACGCTTAGCAAATCTAAGTACATATCAGCATTTTGCAACTCAGTATGTTAATGGATTATTACTTATACTTGATAATATACAGGAAGATAGTTGTCTCATTACTTATCCAATTGGGTCATAGAAAGTTGAAACCTTGTAGTAACTTATAACAAAATCAAAAACGAAGAAATGATCCACAAAGTCTAAGATCTGTCTATGATTCAAGCTGGGCATACCAGATACCCTGGATTTTTACATCCTTAGGAGTCTTTGCCCCCAGATCAGTATCAGATGGCTGAATGCTCTCAAACACTCCAATCACCTCACCAGTCTGTGGGTTGCTCTTGGTAACAGTAAATGTGATCTTTCCTGTTAAAGACGCGGTATTCTTTA</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTGTTTTTGG............................................................GGGAG...............................................................................................................................................................................................................GATTATAGTTGTCTCATTCGTTATCCAATTGGGTCATAGAAAGTTGAAACCTTGTAGTAACTTATAACAAAATCAAAAACGAAGAAATGATCCACAAAGTCTAAGATCTGTCTATGATTCAAGCTGGGCATACCAGATACCCTGGATTTTTACATCCTTAGGAGTCTTTGCCCCCAGATCAGTATCAGATGGCTGAATGCTCTCAAACACTCCAATCACCTCACCAGTCTGTGGGTTGCTCTTGGTAACAGTAAATGTGATCTTTCCTGTTAAAGACGCGGTATTCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E297863" ref_strand="+" ref_description="SGN-E297863 	[cLET-38-N4]">
      <seq>cacatttactgttaccaagagcaacccacagactggtgaggtgattggagtgtttgagagcattcagccatctgatactgatctgggggcaaagactcctaaggatgtaaaaatccagggtatctggtatgcccagcttgaatcatagacagatcttagactttgtggatcatttcttcgtttttgattttgttataagttactacaaggtttcaactttctatgacccaattggataagtaatgagacaactatcttcctgtatattatcaagtataagtaataatccattaacatactgagttgcnnaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="60488" stop="61398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60788" g_stop="61097" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="311" polyA_stop="322"/>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E297863" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>310</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60788" e_stop="61097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATTTACTGTTACCAAGAGCAACCCACAGACTGGTGAGGTGATTGGAGTGTTTGAGAGCATTCAGCCATCTGATACTGATCTGGGGGCAAAGACTCCTAAGGATGTAAAAATCCAGGGTATCTGGTATGCCCAGCTTGAATCATAGACAGATCTTAGACTTTGTGGATCATTTCTTCGTTTTTGATTTTGTTATAAGTTACTACAAGGTTTCAACTTTCTATGACCCAATTGGATAAGTAATGAGACAACTATCTTCCTGTATATTATCAAGTATAAGTAATAATCCATTAACATACTGAGTTGCAAA</genome_strand>
        <mrna_strand>CACATTTACTGTTACCAAGAGCAACCCACAGACTGGTGAGGTGATTGGAGTGTTTGAGAGCATTCAGCCATCTGATACTGATCTGGGGGCAAAGACTCCTAAGGATGTAAAAATCCAGGGTATCTGGTATGCCCAGCTTGAATCATAGACAGATCTTAGACTTTGTGGATCATTTCTTCGTTTTTGATTTTGTTATAAGTTACTACAAGGTTTCAACTTTCTATGACCCAATTGGATAAGTAATGAGACAACTATCTTCCTGTATATTATCAAGTATAAGTAATAATCCATTAACATACTGAGTTGCNNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E293199" ref_strand="+" ref_description="SGN-E293199 	[cLET-12-O3]">
      <seq>cacatttactgttaccaagagcaacccacagactggtgaggtgattggagtgtttgagagcattcagccatctgatactgatctgggggcaaagactcctaaggatgtaaaaatccagggtatctggtatgcccagcttgaatcatagacagatcttagactttgtggatcatttcttggtttttgattttgttataagttactacaaggttttaactttctatgacccaattggataagtaatgagacaactatcttcctgtatattatcaagtataagtaataatccattaacatactgagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="60488" stop="61393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60788" g_stop="61093" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E293199" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60788" e_stop="61093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATTTACTGTTACCAAGAGCAACCCACAGACTGGTGAGGTGATTGGAGTGTTTGAGAGCATTCAGCCATCTGATACTGATCTGGGGGCAAAGACTCCTAAGGATGTAAAAATCCAGGGTATCTGGTATGCCCAGCTTGAATCATAGACAGATCTTAGACTTTGTGGATCATTTCTTCGTTTTTGATTTTGTTATAAGTTACTACAAGGTTTCAACTTTCTATGACCCAATTGGATAAGTAATGAGACAACTATCTTCCTGTATATTATCAAGTATAAGTAATAATCCATTAACATACTGAGTTG</genome_strand>
        <mrna_strand>CACATTTACTGTTACCAAGAGCAACCCACAGACTGGTGAGGTGATTGGAGTGTTTGAGAGCATTCAGCCATCTGATACTGATCTGGGGGCAAAGACTCCTAAGGATGTAAAAATCCAGGGTATCTGGTATGCCCAGCTTGAATCATAGACAGATCTTAGACTTTGTGGATCATTTCTTGGTTTTTGATTTTGTTATAAGTTACTACAAGGTTTTAACTTTCTATGACCCAATTGGATAAGTAATGAGACAACTATCTTCCTGTATATTATCAAGTATAAGTAATAATCCATTAACATACTGAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E225724" ref_strand="-" ref_description="SGN-E225724 	[cLEL-17-D12]">
      <seq>ggtgattggagtgtttgagagcattcagccatctgatactgatctgggggcaaagactcctaaggatgtaaaaatccagggtatctggtatgcccagcttgaatcatagacagatcttagactttgtggatcatttcttcgtttttgattttgttataagttactacaaggtttcaactttctatgacccaattggataagtaatgagacaactatcttcctgtatattatcaagtataagtaataatccattaacatactgagttgcaaaatgctgatatgtacttagatttgctaagcgttccatctcaagaaagtaaaaagttgtatgcttgcctagactctgatataatcgtcgaatctgtctctgtatttggcagcggtaagtattgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="60527" stop="61519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60827" g_stop="61208" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="394" polyA_stop="410"/>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E225724" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225724" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="60827" e_stop="61208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGATTGGAGTGTTTGAGAGCATTCAGCCATCTGATACTGATCTGGGGGCAAAGACTCCTAAGGATGTAAAAATCCAGGGTATCTGGTATGCCCAGCTTGAATCATAGACAGATCTTAGACTTTGTGGATCATTTCTTCGTTTTTGATTTTGTTATAAGTTACTACAAGGTTTCAACTTTCTATGACCCAATTGGATAAGTAATGAGACAACTATCTTCCTGTATATTATCAAGTATAAGTAATAATCCATTAACATACTGAGTTGCAAAATGCTGATATGTACTTAGATTTGCTAAGCGTTCCATCTCAAGAAAGTAAAAAGTTGTATGCTTGCCTAGACTCTGATATAATCGTCGAATCTGTCTCTGTATTTGGCAGCG</genome_strand>
        <mrna_strand>GGTGATTGGAGTGTTTGAGAGCATTCAGCCATCTGATACTGATCTGGGGGCAAAGACTCCTAAGGATGTAAAAATCCAGGGTATCTGGTATGCCCAGCTTGAATCATAGACAGATCTTAGACTTTGTGGATCATTTCTTCGTTTTTGATTTTGTTATAAGTTACTACAAGGTTTCAACTTTCTATGACCCAATTGGATAAGTAATGAGACAACTATCTTCCTGTATATTATCAAGTATAAGTAATAATCCATTAACATACTGAGTTGCAAAATGCTGATATGTACTTAGATTTGCTAAGCGTTCCATCTCAAGAAAGTAAAAAGTTGTATGCTTGCCTAGACTCTGATATAATCGTCGAATCTGTCTCTGTATTTGGCAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E540546" ref_strand="+" ref_description="SGN-E540546 	[TUS-60-O1]">
      <seq>ctcgtggctgaaactgtagaaagcttgtctatttcactgtttttttttaattaattatacattaattctgtagtttgtagtttgttgaatggggagtattgctgcatattgtggtggattgctatgttgttcggagttacgatcgagcaattcaaggatagtttcgggcttatcggtgttggaacaggtggataaggagttgacgaagggagatgaaagggctgctttgtctcttgtcaaggatttgcagggaaaacctggtggccttcggtgttttggcgctgctagacaggtaccacagaggctgtattccttagatgaattgaagttgaatggaatagaagccatatctcttctgtcaccagttgatgctacccttggagcaattgaaagaaatctgcaaattgctgctatattaagtggttctgcagcatggtatgcgcttgatttgagcccacaacagatcctttttgtttctctgggggttctgtttctgtggactctggacttggtttctttcaatggaggagttggtactttggtccttgacacaattggccatacattcagtcagaagtaccataacagggttattcaacatgaagctgggcatttcttgattgcctacttgctgggtattcttcccaaggggtatacactcaccagtttggatgctttgaagaaggaaggatcgttgaacatccaagcaggaacagcctttgtggacttagaatttattgaggaagtaaatagaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="-" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="65688" stop="62635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65388" g_stop="65097" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65096" i_stop="64597" i_length="500">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64596" g_stop="64378" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="511" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64377" i_stop="63567" i_length="811">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63566" g_stop="63480" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="598" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63479" i_stop="63090" i_length="390">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63089" g_stop="62943" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="745" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62942" i_stop="62778" i_length="165">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="62777" g_stop="62765" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="746" r_stop="758" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="-" ref_id="SGN-E540546" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65388" e_stop="65097"/>
          <exon e_start="64596" e_stop="64378"/>
          <exon e_start="63566" e_stop="63480"/>
          <exon e_start="63089" e_stop="62943"/>
          <exon e_start="62777" e_stop="62765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTGGCTGAAACTGTAGAAAGCTTGTCTATTTCACTGTTTTTTTTTAATTAATTATACATTAATTCTGTAGTTTGTAGTTTGTTGAATGGGGAGTATTGCTGCATATTGTGGTGGATTGCTATGTTGTTCGGAGTTACGATCGAGCAATTCAAGGATAGTTTCGGGCTTATCGGTGTTGGAACAGGTGGATAAGGAGTTGACGAAGGGAGATGAAAGGGCTGCTTTGTCTCTTGTCAAGGATTTGCAGGGAAAACCTGGTGGCCTTCGGTGTTTTGGCGCTGCTAGACAGGTTTGTTTTTGCAATGTTCTCTTCATCCGGATCAATTCAGTAGGCACAGTCCCTACAAATTCACGTTTGATAGGTTTTCACTGTTTTTATTCTACCTATTGCATAGTTTTAAGCTGATGGCACAGCTTTGGTATGGGTTACACTGACTACGTTGTTGTTCTGATTTTAAGGCATTGTTGTATAAATGAGTATAATCTACTTTCCTTTTGTTGATTAATCTTTTTGCATTTGTTATAAAGTTTTTAGTTATATATAGAGATATAAATGGTTTGTAAGAAAGGGTGAAATCTTACTTAGTTGTTAGTGATTAGCCGGGCTTAGTGGTAAACTACATCTAGTTAGGTTGAATAATTAATCGTTATGATTTTATTGGACAGACATTGGTCTTGTTATTCTCAGAAATCTGCTTTAAGTTTACAAGTTTATTGAAGAAACATTTGCCTTGTTTCTCTGAGCTTATGTAGGAAAACTGGTTTAACTTTATGTGTAGGCTCATGCAGGTACCACAGAGGCTGTATTCCTTAGATGAATTGAAGTTGAATGGAATAGAAGCCATATCTCTTCTGTCACCAGTTGATGCTACCCTTGGAGCAATTGAAAGAAATCTGCAAATTGCTGCTATATTAAGTGGTTCTGCAGCATGGTATGCGCTTGATTTGAGCCCACAACAGATCCTTTTTGTTTCTCTGGGGGTTCTGTTTCTGTGGACTCTGGACTTGGTAAACTCTTAAGATGCCTGTCAATTTGTCTTCTGGAATTTCTCTATGGCTGTTCATAGAGCAATTTTTGTATCTTTTCGTTAGAAACTTCTTGAAAATTTGTTCCGAAGGTTAGAGTCATGTTATTCACCAAGCAATTGATTTGCTGTGAGTTTTACAAGATTGATTGCTGCTTTTCTTCCATAGAAACTCAAAATTTAGTTTTACTTTAAACAAATTGCTAGGAACAAAAACCGCATTTATAGTAGTTACCAGCTTTAATTTTCTTTTATAGAAGATATTCTGAAAGAGATAAATCTACAACAGATAAGTTAAAAAGAAAATCTACAACAGAAGAGGGCAAGAACTGAATACCAACTGACATAAGAAAAATCACCAATATGAGCAAAGTCTCCAATATAGTGCTGCGATAGCTTTACTCCAAAAAGGGTTGTCAAAGACTAACTTATCACATGCATGTCAATTTATGAAATCACTCTGTAAGAACTAAGCTTTCATGAAACAGTCACTATTGACATATCCAGATAAAAAACACTTTTTCTTTCCCCGTGTTGCCATTTCTCTACGTTTGAAAATCACACTGGGGACATGGTCATGATAATTTGCTAGTTTCATGTTATGTCATATTTCAGGAATATAAAGGAGAACAATCTTAACCCTGTGATAACAGTTTACACTCTTGTTTATGTATATTTGACTGTTAGTCTACTTAGTGAGTCAACAGAGGTGAAAGTAAGAAGTGTAAAATATGGAGTTATGTGTTCTGAGACATTTCAAACATGATAACTGAGTTATCCATATTTGTGCATAGGTTTCTTTCAATGGAGGAGTTGGTACTTTGGTCCTTGACACAATTGGCCATACATTCAGTCAGAAGTACCATAACAGGGTTATTCAAGTGAGATTCATCACTCTCATTCTCTCTCTGTCTCCCTCTCTTCACCTACACATACGAACACACACTACAGAGTATTTAGTTTTCAACTTTTTCTCGAAAAAACAACTAAATAGGTTCTAGTTTTCAACTTCCTTTGATTGTAACATCTTGCAAAAGACTTACAGATTGATTGATATTCAGAATTTGTTTCTTCATTTTCACTTTCTTGCTTCTTCTCAAAAAAAAAAAATAATTCATGTTCCTGCTAATTGCAATGTCCTTCATACACAAGTATTTAATTTCCTTATCATTTACCTCTACTTTTCTCTTTCTGAAAATCATTATTAGTTTGGCTTTTCTTTTCTGTGACTTGTCTTGTAACAAGCTGTTGATTCCCCAATTCTGTTCTAGCATGAAGCTGGGCATTTCTTGATTGCCTACTTGCTGGGTATTCTTCCCAAGGGGTATACACTCACCAGTTTGGATGCTTTGAAGAAGGAAGGATCGTTGAACATCCAAGCAGGAACAGCCTTTGTGGACTTAGAATTTATTGAGGAAGTAGGTAGTCTCCTATCAATTTTTTTAACCTCCAGTAAAGCTTTTCAGTTTTGGTTGTTCCTTGAATATTACTCTTTCTTCTCCTTTAAGCTTTCTGGGCTGGGCAATAATGATTTGTGTATAATTATTCTTTTTCTAGTTTGACCCTGATTCATTGCCGTGCAGGTAAATAGAGGAA</genome_strand>
        <mrna_strand>CTCGTGGCTGAAACTGTAGAAAGCTTGTCTATTTCACTGTTTTTTTTTAATTAATTATACATTAATTCTGTAGTTTGTAGTTTGTTGAATGGGGAGTATTGCTGCATATTGTGGTGGATTGCTATGTTGTTCGGAGTTACGATCGAGCAATTCAAGGATAGTTTCGGGCTTATCGGTGTTGGAACAGGTGGATAAGGAGTTGACGAAGGGAGATGAAAGGGCTGCTTTGTCTCTTGTCAAGGATTTGCAGGGAAAACCTGGTGGCCTTCGGTGTTTTGGCGCTGCTAGACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACAGAGGCTGTATTCCTTAGATGAATTGAAGTTGAATGGAATAGAAGCCATATCTCTTCTGTCACCAGTTGATGCTACCCTTGGAGCAATTGAAAGAAATCTGCAAATTGCTGCTATATTAAGTGGTTCTGCAGCATGGTATGCGCTTGATTTGAGCCCACAACAGATCCTTTTTGTTTCTCTGGGGGTTCTGTTTCTGTGGACTCTGGACTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTTTCAATGGAGGAGTTGGTACTTTGGTCCTTGACACAATTGGCCATACATTCAGTCAGAAGTACCATAACAGGGTTATTCAA......................................................................................................................................................................................................................................................................................................................................................................................................CATGAAGCTGGGCATTTCTTGATTGCCTACTTGCTGGGTATTCTTCCCAAGGGGTATACACTCACCAGTTTGGATGCTTTGAAGAAGGAAGGATCGTTGAACATCCAAGCAGGAACAGCCTTTGTGGACTTAGAATTTATTGAGGAA.....................................................................................................................................................................GTAAATAGAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E291317" ref_strand="+" ref_description="SGN-E291317 	[cLET-2-C16]">
      <seq>tcgtggctgaaactgtagaaagcttgtctatttcactgtttttttttaattaattatacattaattctgtagtttgtagtttgttgaatggggagtattgctgcatattgtggtggattgctatgttgttcggagttacgatcgagcaattcaaggatagtttcgggcttatcggtgttggaacaggtggataaggagttgacgaagggagatgaaagggctgctttgtctcttgtcaaggatttgccgggaaaacctggaggccttcggtgttttggcgctgctagacaggtaccacataggctgtattccttaaatgaattgaagctgaatggaatagaagccatatctcttctgtcaccagttgatgctacccttggagcaattgaaagaaatctgcaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="-" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="65687" stop="64182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65387" g_stop="65097" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65096" i_stop="64597" i_length="500">
            <donor d_prob="0.928" d_score="0.96"/>
            <acceptor a_prob="0.983" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64596" g_stop="64482" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="406" r_length="115" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="-" ref_id="SGN-E291317" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65387" e_stop="65097"/>
          <exon e_start="64596" e_stop="64482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGGCTGAAACTGTAGAAAGCTTGTCTATTTCACTGTTTTTTTTTAATTAATTATACATTAATTCTGTAGTTTGTAGTTTGTTGAATGGGGAGTATTGCTGCATATTGTGGTGGATTGCTATGTTGTTCGGAGTTACGATCGAGCAATTCAAGGATAGTTTCGGGCTTATCGGTGTTGGAACAGGTGGATAAGGAGTTGACGAAGGGAGATGAAAGGGCTGCTTTGTCTCTTGTCAAGGATTTGCAGGGAAAACCTGGTGGCCTTCGGTGTTTTGGCGCTGCTAGACAGGTTTGTTTTTGCAATGTTCTCTTCATCCGGATCAATTCAGTAGGCACAGTCCCTACAAATTCACGTTTGATAGGTTTTCACTGTTTTTATTCTACCTATTGCATAGTTTTAAGCTGATGGCACAGCTTTGGTATGGGTTACACTGACTACGTTGTTGTTCTGATTTTAAGGCATTGTTGTATAAATGAGTATAATCTACTTTCCTTTTGTTGATTAATCTTTTTGCATTTGTTATAAAGTTTTTAGTTATATATAGAGATATAAATGGTTTGTAAGAAAGGGTGAAATCTTACTTAGTTGTTAGTGATTAGCCGGGCTTAGTGGTAAACTACATCTAGTTAGGTTGAATAATTAATCGTTATGATTTTATTGGACAGACATTGGTCTTGTTATTCTCAGAAATCTGCTTTAAGTTTACAAGTTTATTGAAGAAACATTTGCCTTGTTTCTCTGAGCTTATGTAGGAAAACTGGTTTAACTTTATGTGTAGGCTCATGCAGGTACCACAGAGGCTGTATTCCTTAGATGAATTGAAGTTGAATGGAATAGAAGCCATATCTCTTCTGTCACCAGTTGATGCTACCCTTGGAGCAATTGAAAGAAATCTGCAAATTG</genome_strand>
        <mrna_strand>TCGTGGCTGAAACTGTAGAAAGCTTGTCTATTTCACTGTTTTTTTTTAATTAATTATACATTAATTCTGTAGTTTGTAGTTTGTTGAATGGGGAGTATTGCTGCATATTGTGGTGGATTGCTATGTTGTTCGGAGTTACGATCGAGCAATTCAAGGATAGTTTCGGGCTTATCGGTGTTGGAACAGGTGGATAAGGAGTTGACGAAGGGAGATGAAAGGGCTGCTTTGTCTCTTGTCAAGGATTTGCCGGGAAAACCTGGAGGCCTTCGGTGTTTTGGCGCTGCTAGACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATAGGCTGTATTCCTTAAATGAATTGAAGCTGAATGGAATAGAAGCCATATCTCTTCTGTCACCAGTTGATGCTACCCTTGGAGCAATTGAAAGAAATCTGCAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E351159" ref_strand="+" ref_description="SGN-E351159 	[cTOS-6-E11]">
      <seq>ttaatttctatcggaaattagggcaaattctttgcttaagtcttcgagagaaagcatccgaggcttctccctcttctacttgtgggttcaggttatttgcaattgtcatgattgataaaaaaattgacagtaaagatgtggaagctctacagcagaatggagatgagagtagatctcttcaaataaagtttctgtttttcgcccgtgctagagatctgactggcatgactgaaatgccattggaagtttcttatggtagtactgccggtgactgcttgaataaggtcatttctcactttccacggttggaagagatacgtgggtgcatgcttcttgcccggaatgaggaatacacagccgaatccaccactgttaaagatggagatgaattggccattatacctcctattagtggaggctaactcagttcctgaactgcaattatcggaactctattttacttgtatttatgtgtgtgatcatattactaagctgtgttatttattccctaataatacaagaacaaaattctcttgctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="67903" stop="70863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68203" g_stop="68293" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68294" i_stop="70112" i_length="1819">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70570" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="549" r_length="458" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E351159" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68203" e_stop="68293"/>
          <exon e_start="70113" e_stop="70570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTTCTATCGGAAATTAGGGCAAATTCTTTGCTTAAGTCTTCGAGAGAAAGCATCCGAGGCTTCTCCCTCTTCTACTTGTGGGTTCAGGTATATTCGACCTTCTGTAATTCCTCTTTGACCAGTTCTTATGTGAATACAGTTTTTTGGTTTTGGGTGAATTCTCAAATTATCATACGAAGAGGCAATGAAAATTGCTCTATAAGTTGATTCAGCTCTTAGAAAATTGGACAATTTGCTAAAATCACATGTTTCAGAGAATTTGACCTTATTCTGAAAGATGCTAATTAACTACTCTCTTGTTATTATATACTTTGCTTATACTTAGATGCCTAAAACAGAATTATATGTTCCAGTTACTTGGAGAATACATGTTCATTGAGGAGTCACGTAGATTGTTTATGGATTTAACTTGAATCTATTTACCAGTTTGACACAAAACATCCAAAAAAAAATTGAAAAAAAAGGAAAGAAATCGAAAAGATGATCATCAGATTGGAACAGAAATTTCGTAGGTAGTTGTGCAAATGTCTTAGCTGATAAACACACATATACTCGGTTTTAGGCAACAGATTAAAAGAAAATAAAAAATAAATTAAGAACTAAGAAGAGAATCTTTTCGGTGCTCTCTTAATTTAGTGTTTACTTCCCTATTTGGGAGGTTTGTGGGGGCTGAGGGGAGGTGTAGCCTGCCATGAATCCCATTGATCTATAAACAAGGACAGCAGACATGAGCCTTATCAGGATGACAACAACAACAACGTACCCAGTGAGCCTTACCAGGATGATTAGTTCTTAACGACAGTTATCGAACTTATATTTTCTTTCAATCCAAATCAAAGTTAAATTGAATAGATACTCATGTCTTCTTTTGAAATGGTTCATAACCAAATTTTGTGTAAATTAAGCTTGAAACTTTATTTGGAATTCAACAAGTTAATGGATTAGTATATGAGTGAAATCTGGAAGCGTAGTCTGATTGTATCTATAACATAGCATAGTCGGGTGTTATGCCTTCAACAAATTGGTGTATCTTTATCCTATCTACTTCCTGATGTGGTTAGCTGTTTGCTATGCTTTCTCCTTCTTTTTTGGGGGGGTGGGGCGGGGTGGGGCTGTGTTTTGACTGAATCCTATAAATTGATCTTAGCTTCCAAAAAAATATGCTGTGTCATCTTTTATCATTTGTTTCTCAAGTAAGTTTGTCACTTTTTGTTGTTACTAGGAAATACAACTCTTCGATACTCTTTTAGTCTGTGCCAATTTTTCTAGTTTCTTTCTTACTTAAGTTTTATTTTGCTGTTACTAGGAAATCCAATACTTCTATACTATTTTAGTTTGTGTCATTTTTCTCATTTCTTTCTTAAATAAGTTTGTGACTTTCTGCCGTTACTTGGAAATCCAACTCTTCTATACTCTTTACAAGTTTATCTTAACCATAATGTAAGTACATACATGGATGTAGTGAACTTGGCTTGAATTTACCCTTTCTTTTTAGTTCTCTTGACTCATTTTAAAATGACTGTTAATTCTGCATTGAACTTAATGTTGTAAAAGAAGGAACATCATTTTCTTTCACTGTGAAGTGTGTGGACATGGGTTAATGGTTTTGGTCAATTGCAAATGCATTGTTTTCCATTACATAAGATGTTGGTCACTTTTGGTCATGTTAACATAGTTCTAAATTCAATTCTATTTTTGTGTCTTTAGTTAGTCTACTTATAGTCAGTGTTTAACTTACTTTTAGATTTCAACTTCTTGTAGAAGTTTAATTATTTAGTTGTATTTTCTTAGGAAAAAGTAACAGATCCTTTTAAATACTCAGTTATTCTTTAATTCTAGAGGGCGAATAGTCATTGTCGGAGCATAACTGATAGACGTTACCCCTACTGTTGAATATACTGGACAGGTTATTTGCAATTGTCATGATTGATAAAAAAATTGACAGTAAAGATGTGGAAGCTCTACAGCAGAATGGAGATGAGAGTAGATCTCTTCAAATAAAGTTTCTGTTTTTCGCCCGTGCTAGAGATCTGACTGGCATGACTGAAATGCCATTGGAAGTTTCTTATGGTAGTACTGCCGGTGACTGCTTGAATAAGGTCATTTCTCACTTTCCACGGTTGGAAGAGATACGTGGGTGCATGCTTCTTGCCCGGAATGAGGAATACACAGCCGAATCCACCACTGTTAAAGATGGAGATGAATTGGCCATTATACCTCCTATTAGTGGAGGCTAACTCAGTTCCTGAACTGCAATTATCGGAACTCTATTTTACTTGTATTTATGTGTGTGATCATATTACTAAGCTGTGTTATTTATTCCCTAATAATACAAGAACAAAATTCTCTTGCTAAAATCATTGA</genome_strand>
        <mrna_strand>TTAATTTCTATCGGAAATTAGGGCAAATTCTTTGCTTAAGTCTTCGAGAGAAAGCATCCGAGGCTTCTCCCTCTTCTACTTGTGGGTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTGCAATTGTCATGATTGATAAAAAAATTGACAGTAAAGATGTGGAAGCTCTACAGCAGAATGGAGATGAGAGTAGATCTCTTCAAATAAAGTTTCTGTTTTTCGCCCGTGCTAGAGATCTGACTGGCATGACTGAAATGCCATTGGAAGTTTCTTATGGTAGTACTGCCGGTGACTGCTTGAATAAGGTCATTTCTCACTTTCCACGGTTGGAAGAGATACGTGGGTGCATGCTTCTTGCCCGGAATGAGGAATACACAGCCGAATCCACCACTGTTAAAGATGGAGATGAATTGGCCATTATACCTCCTATTAGTGGAGGCTAACTCAGTTCCTGAACTGCAATTATCGGAACTCTATTTTACTTGTATTTATGTGTGTGATCATATTACTAAGCTGTGTTATTTATTCCCTAATAATACAAGAACAAAATTCTCTTGCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E349895" ref_strand="+" ref_description="SGN-E349895 	[cTOS-3-I5]">
      <seq>ttaatttctatcggaaattagggcaaattctttgcttaagtcttcgagagaaagcatccgaggcttctccctcttctacttgtgggttcaggttatttgcaattgtcatgattgataaaaaaattgacagtaaagatgtggaagctctacagcagaatggagatgagagtagatctcttcaaataaagtttctgtttttcgcccgtgctagagatctgactggcatgactgaaatgccattggaagtttcttatggtagtactgccggtgactgcttgaataaggtcatttctcactttccacggttggaagagatacgtgggtgcatgcttcttgcccggaatgaggaatacacagccgaatccaccactgttaaagatggagatgaattggccattatacctcctattagtggaggctaactcagttcctgaactgcaattatcggaactctattttacttgtatttatgtgtgtgatcatattactaagctgtgttatttattccctaataaatacagaancaaattctcttgctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="67903" stop="70863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68203" g_stop="68293" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68294" i_stop="70112" i_length="1819">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70113" g_stop="70568" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="547" r_length="456" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E349895" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68203" e_stop="68293"/>
          <exon e_start="70113" e_stop="70568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTTCTATCGGAAATTAGGGCAAATTCTTTGCTTAAGTCTTCGAGAGAAAGCATCCGAGGCTTCTCCCTCTTCTACTTGTGGGTTCAGGTATATTCGACCTTCTGTAATTCCTCTTTGACCAGTTCTTATGTGAATACAGTTTTTTGGTTTTGGGTGAATTCTCAAATTATCATACGAAGAGGCAATGAAAATTGCTCTATAAGTTGATTCAGCTCTTAGAAAATTGGACAATTTGCTAAAATCACATGTTTCAGAGAATTTGACCTTATTCTGAAAGATGCTAATTAACTACTCTCTTGTTATTATATACTTTGCTTATACTTAGATGCCTAAAACAGAATTATATGTTCCAGTTACTTGGAGAATACATGTTCATTGAGGAGTCACGTAGATTGTTTATGGATTTAACTTGAATCTATTTACCAGTTTGACACAAAACATCCAAAAAAAAATTGAAAAAAAAGGAAAGAAATCGAAAAGATGATCATCAGATTGGAACAGAAATTTCGTAGGTAGTTGTGCAAATGTCTTAGCTGATAAACACACATATACTCGGTTTTAGGCAACAGATTAAAAGAAAATAAAAAATAAATTAAGAACTAAGAAGAGAATCTTTTCGGTGCTCTCTTAATTTAGTGTTTACTTCCCTATTTGGGAGGTTTGTGGGGGCTGAGGGGAGGTGTAGCCTGCCATGAATCCCATTGATCTATAAACAAGGACAGCAGACATGAGCCTTATCAGGATGACAACAACAACAACGTACCCAGTGAGCCTTACCAGGATGATTAGTTCTTAACGACAGTTATCGAACTTATATTTTCTTTCAATCCAAATCAAAGTTAAATTGAATAGATACTCATGTCTTCTTTTGAAATGGTTCATAACCAAATTTTGTGTAAATTAAGCTTGAAACTTTATTTGGAATTCAACAAGTTAATGGATTAGTATATGAGTGAAATCTGGAAGCGTAGTCTGATTGTATCTATAACATAGCATAGTCGGGTGTTATGCCTTCAACAAATTGGTGTATCTTTATCCTATCTACTTCCTGATGTGGTTAGCTGTTTGCTATGCTTTCTCCTTCTTTTTTGGGGGGGTGGGGCGGGGTGGGGCTGTGTTTTGACTGAATCCTATAAATTGATCTTAGCTTCCAAAAAAATATGCTGTGTCATCTTTTATCATTTGTTTCTCAAGTAAGTTTGTCACTTTTTGTTGTTACTAGGAAATACAACTCTTCGATACTCTTTTAGTCTGTGCCAATTTTTCTAGTTTCTTTCTTACTTAAGTTTTATTTTGCTGTTACTAGGAAATCCAATACTTCTATACTATTTTAGTTTGTGTCATTTTTCTCATTTCTTTCTTAAATAAGTTTGTGACTTTCTGCCGTTACTTGGAAATCCAACTCTTCTATACTCTTTACAAGTTTATCTTAACCATAATGTAAGTACATACATGGATGTAGTGAACTTGGCTTGAATTTACCCTTTCTTTTTAGTTCTCTTGACTCATTTTAAAATGACTGTTAATTCTGCATTGAACTTAATGTTGTAAAAGAAGGAACATCATTTTCTTTCACTGTGAAGTGTGTGGACATGGGTTAATGGTTTTGGTCAATTGCAAATGCATTGTTTTCCATTACATAAGATGTTGGTCACTTTTGGTCATGTTAACATAGTTCTAAATTCAATTCTATTTTTGTGTCTTTAGTTAGTCTACTTATAGTCAGTGTTTAACTTACTTTTAGATTTCAACTTCTTGTAGAAGTTTAATTATTTAGTTGTATTTTCTTAGGAAAAAGTAACAGATCCTTTTAAATACTCAGTTATTCTTTAATTCTAGAGGGCGAATAGTCATTGTCGGAGCATAACTGATAGACGTTACCCCTACTGTTGAATATACTGGACAGGTTATTTGCAATTGTCATGATTGATAAAAAAATTGACAGTAAAGATGTGGAAGCTCTACAGCAGAATGGAGATGAGAGTAGATCTCTTCAAATAAAGTTTCTGTTTTTCGCCCGTGCTAGAGATCTGACTGGCATGACTGAAATGCCATTGGAAGTTTCTTATGGTAGTACTGCCGGTGACTGCTTGAATAAGGTCATTTCTCACTTTCCACGGTTGGAAGAGATACGTGGGTGCATGCTTCTTGCCCGGAATGAGGAATACACAGCCGAATCCACCACTGTTAAAGATGGAGATGAATTGGCCATTATACCTCCTATTAGTGGAGGCTAACTCAGTTCCTGAACTGCAATTATCGGAACTCTATTTTACTTGTATTTATGTGTGTGATCATATTACTAAGCTGTGTTATTTATTCCCTAATAATACAAGAACAAAATTCTCTTGCTAAAATCATT</genome_strand>
        <mrna_strand>TTAATTTCTATCGGAAATTAGGGCAAATTCTTTGCTTAAGTCTTCGAGAGAAAGCATCCGAGGCTTCTCCCTCTTCTACTTGTGGGTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTGCAATTGTCATGATTGATAAAAAAATTGACAGTAAAGATGTGGAAGCTCTACAGCAGAATGGAGATGAGAGTAGATCTCTTCAAATAAAGTTTCTGTTTTTCGCCCGTGCTAGAGATCTGACTGGCATGACTGAAATGCCATTGGAAGTTTCTTATGGTAGTACTGCCGGTGACTGCTTGAATAAGGTCATTTCTCACTTTCCACGGTTGGAAGAGATACGTGGGTGCATGCTTCTTGCCCGGAATGAGGAATACACAGCCGAATCCACCACTGTTAAAGATGGAGATGAATTGGCCATTATACCTCCTATTAGTGGAGGCTAACTCAGTTCCTGAACTGCAATTATCGGAACTCTATTTTACTTGTATTTATGTGTGTGATCATATTACTAAGCTGTGTTATTTATTCCCTAATAAATACAGAANCAAATTCTCTTGCTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E270641" ref_strand="+" ref_description="SGN-E270641 	[cLEM-6-K1]">
      <seq>tgaatctacatctattgctacagcaaaattgatactacaagacggaagattacaagagtttccttatccagtaaaggcgtcttacctgttacagaaagatccgtcaatattcatatgtaattccgatgaaatggatttcggtgatgtcgtttccgccataagcgctgatgaagagcttcaacccggtcaactttactttgcgttgccgttaagcaatctgaaacgtaggcttaaggcggaggaaatggcagcattagctgtaaaagctagttctgcattgaacaattgtggcactgagaaatacggttgtcgccgtaaaggttcagatttcttagtagaaaaaaaggggaaaaggagagataataacgattccgccgccgctgcggaattgagaagagcgaggagtagtggtggtagtgggaggagaggtaagtttacggcgaggttaactgcaatacctgagtagatttaacttttggggaaaatcaaactgttcattttaatagttttttttacaattttgtgaatatagtagaaaattagttgaggttaatattcaagatctgctctcggattagtgagtagttcgaaattcggcatcaaactttttttttaatttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="81431" stop="82652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81731" g_stop="82352" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E270641" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81731" e_stop="82352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATCTACATCTATTGCTACAGCAAAATTGATACTACAAGACGGAAGATTACAAGAGTTTCCTTATCCAGTAAAGGCGTCTTACCTGTTACAGAAAGATCCGTCAATATTCATATGTAATTCCGATGAAATGGATTTCGGTGATGTCGTTTCCGCCATAAGCGCTGATGAAGAGCTTCAACCCGGTCAACTTTACTTTGCGTTGCCGTTAAGCAATCTGAAACGTAGGCTTAAGGCGGAGGAAATGGCAGCATTAGCTGTAAAAGCTAGTTCTGCATTGAACAATTGTGGCACTGAGAAATACGGTTGTCGCCGTAAAGGTTCAGATTTCTTAGTAGAAAAAAAGGGGAAAAGGAGAGATAATAACGATTCCGCCGCCGCTGCGGAATTGAGAAGAGCGAGGAGTAGTGGTGGTAGTGGGAGGAGAGGTAAGTTTACGGCGAGGTTAACTGCAATACCTGAGTAGATTTAACTTTTGGGGAAAATCAAACTGTTCATTTTAATAGTTTTTTTTACAATTTTGTGAATATAGTAGAAAATTAGTTGAGGTTAATATTCAAGATCTGCTCTCGGATTAGTGAGTAGTTCGAAATTCGGCATCAAACTTTTTTTTTAATTTTTT</genome_strand>
        <mrna_strand>TGAATCTACATCTATTGCTACAGCAAAATTGATACTACAAGACGGAAGATTACAAGAGTTTCCTTATCCAGTAAAGGCGTCTTACCTGTTACAGAAAGATCCGTCAATATTCATATGTAATTCCGATGAAATGGATTTCGGTGATGTCGTTTCCGCCATAAGCGCTGATGAAGAGCTTCAACCCGGTCAACTTTACTTTGCGTTGCCGTTAAGCAATCTGAAACGTAGGCTTAAGGCGGAGGAAATGGCAGCATTAGCTGTAAAAGCTAGTTCTGCATTGAACAATTGTGGCACTGAGAAATACGGTTGTCGCCGTAAAGGTTCAGATTTCTTAGTAGAAAAAAAGGGGAAAAGGAGAGATAATAACGATTCCGCCGCCGCTGCGGAATTGAGAAGAGCGAGGAGTAGTGGTGGTAGTGGGAGGAGAGGTAAGTTTACGGCGAGGTTAACTGCAATACCTGAGTAGATTTAACTTTTGGGGAAAATCAAACTGTTCATTTTAATAGTTTTTTTTACAATTTTGTGAATATAGTAGAAAATTAGTTGAGGTTAATATTCAAGATCTGCTCTCGGATTAGTGAGTAGTTCGAAATTCGGCATCAAACTTTTTTTTTAATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E281579" ref_strand="-" ref_description="SGN-E281579 	[cLEL-1-L20]">
      <seq>attctggcctatgtcctgccggtgtgttagagatgatccagcaatctttgccggaatctcttagaaagagcattaagaagattccacagggaaagggccgcaagaacattgaatggattcctcataattttgctttccggtatctaataatgaaggacctggtgaaatgatgatggtatgttaagattaatcgaagaatgtggttgtttctttcttttttttctttgaaagaagtctcaattctttttcccatcacttgtgtatacatgaatggtagttttcagttagaatggaggatgatcaaagttcctgtaattgtgtctttgtggaagtgcccctcaattctttggctatttctatttgagcaaagcctagttgtgtgctctaagaagaagcaaattctgtgtttcgggcacgtatataaatctaaatctcatctccattggttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="-" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="87765" stop="86717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87465" g_stop="87021" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="449" polyA_stop="466"/>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="-" ref_id="SGN-E281579" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281579" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="87465" e_stop="87021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTGGCCTATGTCCTGCCGGTGTGTTAGAGATGATCCAGCAATCTTTGCCGGAATCTCTTAGAAAGAGCATTAAGAAGATTCCACAGGGAAAGGGCCGCAAGAACATTGAATGGATTCCTCATAATTTTGCTTTCCGGTATCTAATAATGAAGGACCTGGTGAAATGATGATGGTATGTTAAGATTAATCGAAGAATGTGGTTGTTTCTTTCTTTTTTTTCTTTGAAAGAAGTCTCAATTCTTTTTCCCATCACTTGTGTATACATGAATGGTAGTTTTCAGTTAGAATGGAGGATGATCAAAGTTCCTGTAATTGTGTCTTTGTGGAAGTGCCCCTCAATTCTTTGGCTATTTCTATTTGAGCAAAGCCTAGTTGTGTGCTCTAAGAAGAAGCAAATTCTGTGTTTCAGGCACGTATATAAATCTAAATCTCATCTCCATTG</genome_strand>
        <mrna_strand>ATTCTGGCCTATGTCCTGCCGGTGTGTTAGAGATGATCCAGCAATCTTTGCCGGAATCTCTTAGAAAGAGCATTAAGAAGATTCCACAGGGAAAGGGCCGCAAGAACATTGAATGGATTCCTCATAATTTTGCTTTCCGGTATCTAATAATGAAGGACCTGGTGAAATGATGATGGTATGTTAAGATTAATCGAAGAATGTGGTTGTTTCTTTCTTTTTTTTCTTTGAAAGAAGTCTCAATTCTTTTTCCCATCACTTGTGTATACATGAATGGTAGTTTTCAGTTAGAATGGAGGATGATCAAAGTTCCTGTAATTGTGTCTTTGTGGAAGTGCCCCTCAATTCTTTGGCTATTTCTATTTGAGCAAAGCCTAGTTGTGTGCTCTAAGAAGAAGCAAATTCTGTGTTTCGGGCACGTATATAAATCTAAATCTCATCTCCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E325241" ref_strand="+" ref_description="SGN-E325241 	[cTOC-1-E2]">
      <seq>gtgccgaattcggcacgagggtcgagcagagcctccccaccggaagagacactcggcaaaacattgcgtgcctgtcattctcaaccgttatctatgatggagtatgcacaaaatgcttcttcaaatgtaatcagtttggcagagcatctaggcacccgtatctctgatcacgttcctgatacaccaaacaagctgtccgaggatatgataaagtgcatgtgcaccatatatagcaagcttgctgatcctccactgacaaatcccggtctttcatcgccaacctcatccttgtcttccataagtgcattttccccaaaagacatatggagtccaggatttaggaatgattcatcttttgatgttcggctggacaatccttttcatgtagaagggttgaaggagttcagtggaccttacagcacaatgattgaagtacagtgtgtatatagagatactcagaaattgggcgatattgaaccgatgttacagcacttcaggtcacttatttctcgcctagaacaaattgatccacgaaagttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="-" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="89635" stop="88264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89335" g_stop="89254" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="102" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89253" i_stop="89088" i_length="166">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89087" g_stop="88693" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="497" r_length="395" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88692" i_stop="88608" i_length="85">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88607" g_stop="88564" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="541" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="-" ref_id="SGN-E325241" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89335" e_stop="89254"/>
          <exon e_start="89087" e_stop="88693"/>
          <exon e_start="88607" e_stop="88564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGAGCAGAGCCTCCCCACCGGAAGAGACACTCGGCAAAACATTGCGTGCCTGTCATTCTCAACCGTTATCTATGATGGAGGTAATTTGCAATCACGGAGATGAATTTTCGTTGCACTTTCTGCTATTTGAGGGACGGATTATTTTTATTATTGTTGCATCTAGATATATGATGACTCAGAAGTGTTCTTTTAAAAAACAATTAACAGCTTAAAAATTTGAGTCTCTCTTTTACGACTTCTTTGCAGTATGCACAAAATGCTTCTTCAAATGTAATCAGTTTGGCAGAGCATCTAGGCACCCGTATCTCTGATCACGTTCCTGATACACCAAACAAGCTGTCCGAGGATATGATAAAGTGCATGTGCACCATATATAGCAAGCTTGCTGATCCTCCACTGACAAATCCCGGTCTTTCATCGCCAACCTCATCCTTGTCTTCCATAAGTGCATTTTCCCCAAAAGACATATGGAGTCCAGGATTTAGGAATGATTCATCTTTTGATGTTCGGCTGGACAATCCTTTTCATGTAGAAGGGTTGAAGGAGTTCAGTGGACCTTACAGCACAATGATTGAAGTACAGTGTGTATATAGAGATACTCAGAAATTGGGCGATATTGAACCGATGTTACAGCACTTCAGGTAAGAACATATGAGATTCAGGCACCTCATATCATGAGCTTAACCTTTATTGACGTATGGTGCTCCTTGAGGTGTCATATTGCAGGTCACTTATTTCTCGCCTAGAACAAATTGATCCACGAAAGTTGA</genome_strand>
        <mrna_strand>GTCGAGCAGAGCCTCCCCACCGGAAGAGACACTCGGCAAAACATTGCGTGCCTGTCATTCTCAACCGTTATCTATGATGGAG......................................................................................................................................................................TATGCACAAAATGCTTCTTCAAATGTAATCAGTTTGGCAGAGCATCTAGGCACCCGTATCTCTGATCACGTTCCTGATACACCAAACAAGCTGTCCGAGGATATGATAAAGTGCATGTGCACCATATATAGCAAGCTTGCTGATCCTCCACTGACAAATCCCGGTCTTTCATCGCCAACCTCATCCTTGTCTTCCATAAGTGCATTTTCCCCAAAAGACATATGGAGTCCAGGATTTAGGAATGATTCATCTTTTGATGTTCGGCTGGACAATCCTTTTCATGTAGAAGGGTTGAAGGAGTTCAGTGGACCTTACAGCACAATGATTGAAGTACAGTGTGTATATAGAGATACTCAGAAATTGGGCGATATTGAACCGATGTTACAGCACTTCAG.....................................................................................GTCACTTATTTCTCGCCTAGAACAAATTGATCCACGAAAGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E342542" ref_strand="+" ref_description="SGN-E342542 	[cTOF-8-P6]">
      <seq>ctacttacactttcaactcctggtcaaaaggagggctgccttttcttgtccatttgagactttatgcaaagacaagttgggggttttatttcaagctgaggtttttgaggcctgttttgggtctttaggaccagtgggtctgtttccattttccaaatatttgatctttgatagttacctgtttgaagtatgtactgatatggattttgaagggtttagcaccagtaaatttccagaaaatagagtgacatcatctaaacacacgcgttccaagagcttcccagttaaaccagaacaagaggagaatatcgtggatcattctgtagagacctctaatcgattgaagttggatacgagtcacgggaatgactgtaacgtgagcgagaagaaaccatcatcctcggctgaaatacaaagttctctgaggcaagagataatgcagctggagagaagattacatgatcaagttgcagttcgatgtgctcttgagaaagcattaggttataaatcttcttctcaagatgtcaatgaagtgaccgcaatgcctaagccagcaacagaactgatcagagatattgcagtactagaattggaagttgggcatttggaacagtatcttctctcactatacaggaaagcatttgatcaacaagtctcatccttatctgctcccacaaaagatgatnaactaaaatctcctattagtaccccaaggaggcgtcttgatttctccaatnctgatgtgatattgaaaagggaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="-" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="92382" stop="89164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92082" g_stop="91886" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91885" i_stop="91788" i_length="98">
            <donor d_prob="0.424" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91787" g_stop="91709" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="276" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91708" i_stop="91214" i_length="495">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91213" g_stop="91141" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="349" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91140" i_stop="90867" i_length="274">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90866" g_stop="90783" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="433" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90782" i_stop="90694" i_length="89">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90693" g_stop="90577" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="550" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90576" i_stop="89677" i_length="900">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89676" g_stop="89464" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="763" r_length="213" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="-" ref_id="SGN-E342542" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92082" e_stop="91886"/>
          <exon e_start="91787" e_stop="91709"/>
          <exon e_start="91213" e_stop="91141"/>
          <exon e_start="90866" e_stop="90783"/>
          <exon e_start="90693" e_stop="90577"/>
          <exon e_start="89676" e_stop="89464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTTACACTTTCAACTCCTGGTCAAAAGGAGGGCTGCCTTTTCTTGTCCATTTGAGACTTTATGCAAAGACAAGTTGGGGGTTTTATTTCAAGCTGAGGTTTTTGAGGCCTGTTTTGGGTCTTTAGGACCAGTGGGTCTGTTTCCATTTTCCAAATATTTGATCTTTGATAGTTACCTGTTTGAAGTATGTACTGGTAAGTATACTCTGATCCAGTTTTGCTGTTCCCATTTACGAAAAATTGGTTCTTGATGGCTAATGGCAAGCTTTTCATTCACATTGAGTGAGCTGCAGATATGGATTTTGAAGGGTTTAGCACCAGTAAATTTCCAGAAAATAGAGTGACATCATCTAAACACACGCGTTCCAAGAGGTAGACTTTGGATTTATTCTTGTCTAGAATTCTCTCTCTTTCTCCCTTCATCGCTTTGGGGTCTGCTTAACTAGAAAAAATTGCTTATTGGGTGTATTCCTCGTGGTAGATTTTGTAGTGGTTTTTACGAATAAAACCCCTCTAAATCACATCTGTGCAACTATGTGCTTGCTTGACAAACTGTTGTTTCGTGTACCAATGTGCTCTGCGTTACTGCAAAAATTGGAAAGCTCTGTAGCAAGAGTGGGAAAGGGGAAAAGGGCTTTTTCTTATATGACATGGAGTACTGAATCTAAGCATTCATGCCGTTTACTTCTGTTCTTATATCCTACTACTTCTTCAGTTCCTTTGCACAAAGCAATTTGTTTATTTTAGAAGTCTTTGTGCAATCCAGATTTTAACCCGTGGCTAAATCTTTCCTACATGTGATTTGTTGAGTGCTGTCTTACTGCTTCATTCAATCTTAGTCTTTTTGTGTGATTTCTGCAATGGCAGCTTCCCAGTTAAACCAGAACAAGAGGAGAATATCGTGGATCATTCTGTAGAGACCTCTAATCGATTGAAGTTGGTAAGGACGCTTCGTTCTCGCGTTTTGATGTTAAAAGTAGCCCCCAAGCTATAGTGTCACAATTTCAAATGTTGGAAAAGGAAATAAAAGTAGATCAGAATGGATGATCTTCTACCTAGCTTCCTATATCCCTTTTCCTTCCCTGTAGTCTTGTTTTCTGATATGTCTATGATCCAATTTGCTAGTTCTATCTTCTGAAAAGGTAAAGAAGAACAAAGACCTCAAAGTACTGAGCTTTTGCAACTATTTGAGAATAATATTTTATTTACACTAGGATACGAGTCACGGGAATGACTGTAACGTGAGCGAGAAGAAACCATCATCCTCGGCTGAAATACAAAGTTCTCTGAGGCAAGAGGTAGTCTAACATAGATGATATATCTGCTCATGTTGGTAAATTGGAAAGATTCTTAATGTTTATAGTGGTTTAAGCCATATCCTTTGCAGATAATGCAGCTGGAGAGAAGATTACATGATCAAGTTGCAGTTCGATGTGCTCTTGAGAAAGCATTAGGTTATAAATCTTCTTCTCAAGATGTCAATGAAGTGACCGCAATGCCTAAGGTACCTCCTTCTGCTCTGTGTAGTTTTTTAATGAACTATACTATGTTGTAATCTTTAGCATCCTCTAACGAAGTTTCTCACTTTAGTTGATCTCAAACAAGAACTAAGATATTGTAATGACCCTTCTTGTCATTTTTAGTGTTTTATCTTCTGTGCATCGTTTAGAGCGTTCCTATAGCGATCCCAAGTCATTTATGACTTGCTGGGACTAACAGATCGGTCACCTGGTCGTTCGTTTGGTTATTGTGTGAGCTTTAGTATTTTTGAAGTCAAACTTAGCCTTTAACTTAAAGTTAAAACACCTAATCACACCAACTCACATTGAAAACTTCGGGAGTCATGTCAACAATGCTACTAGCCTAAAATGACCCTTCTGGAACTGATGGAATCGTCAGAATTGGATTCTGATGTCATCTTCTTGAACTTTTGATCGAAAATGATCGTTCAAGGTTCATAAGCTCCAAAAATACTAAAGCTCACACAATAACCAAACTAACGACCAGGTGACCGATCTGTCAGTCCCAGCAAGTCATAAATGACTTGGGATCGCTATAGGAACGCTCTAAACGATGCACAGAAGATAAAACACTAAAAATGACAAGAAGAGTCATTACATATATGCTATATATATGAGATACTTTTGAAGAGGTTGATTTTAGATATGTGATAATGCAAATATGTTAGCTTTACATATGCTCTCTGAGTTTGTGTAAACTTGGGAACTTCACACATTAATTTCTTTGTGAAGCTGATTTAGTAGTGTAAGCCTCAAATAGTCTATTTTTAGTTCCGAGTTTCTGCTAGGCTCATTGTTGTTGTTGGGTTATTTCCTTATATCTTAATTGATTGTTAACTGTATTTCTGTCTTATGTTGATTGTACTCTTCTCAACTATTTCCAGCCAGCAACAGAACTGATCAGAGATATTGCAGTACTAGAATTGGAAGTTGGGCATTTGGAACAGTATCTTCTCTCACTATACAGGAAAGCATTTGATCAACAAGTCTCATCCTTATCTCCTCCCACAAAAGATGATAAACTAAAATCTCCTATAAGTACCCCAAGGAGGCGTCTTGATTTCTCCAATTCTGATGTGATATTGAAAAGGGAAAAA</genome_strand>
        <mrna_strand>CTACTTACACTTTCAACTCCTGGTCAAAAGGAGGGCTGCCTTTTCTTGTCCATTTGAGACTTTATGCAAAGACAAGTTGGGGGTTTTATTTCAAGCTGAGGTTTTTGAGGCCTGTTTTGGGTCTTTAGGACCAGTGGGTCTGTTTCCATTTTCCAAATATTTGATCTTTGATAGTTACCTGTTTGAAGTATGTACTG..................................................................................................ATATGGATTTTGAAGGGTTTAGCACCAGTAAATTTCCAGAAAATAGAGTGACATCATCTAAACACACGCGTTCCAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCCAGTTAAACCAGAACAAGAGGAGAATATCGTGGATCATTCTGTAGAGACCTCTAATCGATTGAAGTTG..................................................................................................................................................................................................................................................................................GATACGAGTCACGGGAATGACTGTAACGTGAGCGAGAAGAAACCATCATCCTCGGCTGAAATACAAAGTTCTCTGAGGCAAGAG.........................................................................................ATAATGCAGCTGGAGAGAAGATTACATGATCAAGTTGCAGTTCGATGTGCTCTTGAGAAAGCATTAGGTTATAAATCTTCTTCTCAAGATGTCAATGAAGTGACCGCAATGCCTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCAACAGAACTGATCAGAGATATTGCAGTACTAGAATTGGAAGTTGGGCATTTGGAACAGTATCTTCTCTCACTATACAGGAAAGCATTTGATCAACAAGTCTCATCCTTATCTGCTCCCACAAAAGATGATNAACTAAAATCTCCTATTAGTACCCCAAGGAGGCGTCTTGATTTCTCCAATNCTGATGTGATATTGAAAAGGGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E316044" ref_strand="+" ref_description="SGN-E316044 	[cTOA-23-K2]">
      <seq>tcttcaccttcccctctattgcacaaagctatattgggaatgtgggagtaacagatttttggagcaaaagtgagcatctgctacttacactttcaactcctggtcaaaaggagggctgccttttcttgtccatttgagactttatgcaaagacaagttgggggttttatttcaagctgaggtttttgaggcctgttttgggtctttaggaccagtgggtctgtttccattttccaaatatttgatctttgatagttacctgtttgaagtatgtactgatatggattttgaagggtttagcaccagtaaatttccagaaaatagagtgacatcatctaaacacacgcgttccaagagcttcccagttaaaccagaacaagaggagaatatcgtggatcattctgtagagacctctaatcgattgaagttggatacgagtcacgggaatgactgtaacgtgagcgagaagaaaccatcatcctcggctgaaatacaaagttctctgaggcaagagataatgcagctggagagaagattacatgatcaagttgcagttcgatgtgctcttgagaaagcattaggttataaatcttcttctcaagatgtcaatgaagtgaccgcaatgcctaagccagcaacagaactgatcagagatattgcagtactagaattggaagttgggcatttggaacagtatcttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="-" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="92462" stop="89304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92162" g_stop="91886" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91885" i_stop="91788" i_length="98">
            <donor d_prob="0.424" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91787" g_stop="91709" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="356" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91708" i_stop="91214" i_length="495">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91213" g_stop="91141" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="429" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91140" i_stop="90867" i_length="274">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90866" g_stop="90783" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="513" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90782" i_stop="90694" i_length="89">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90693" g_stop="90577" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="630" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90576" i_stop="89677" i_length="900">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="89676" g_stop="89604" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="703" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="-" ref_id="SGN-E316044" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92162" e_stop="91886"/>
          <exon e_start="91787" e_stop="91709"/>
          <exon e_start="91213" e_stop="91141"/>
          <exon e_start="90866" e_stop="90783"/>
          <exon e_start="90693" e_stop="90577"/>
          <exon e_start="89676" e_stop="89604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCACCTTCCCCTCTATTGCACAAAGCTATATTGGGAATGTGGGAGTAACAGATTTTTGGAGCAAAAGTGAGCATCTGCTACTTACACTTTCAACTCCTGGTCAAAAGGAGGGCTGCCTTTTCTTGTCCATTTGAGACTTTATGCAAAGACAAGTTGGGGGTTTTATTTCAAGCTGAGGTTTTTGAGGCCTGTTTTGGGTCTTTAGGACCAGTGGGTCTGTTTCCATTTTCCAAATATTTGATCTTTGATAGTTACCTGTTTGAAGTATGTACTGGTAAGTATACTCTGATCCAGTTTTGCTGTTCCCATTTACGAAAAATTGGTTCTTGATGGCTAATGGCAAGCTTTTCATTCACATTGAGTGAGCTGCAGATATGGATTTTGAAGGGTTTAGCACCAGTAAATTTCCAGAAAATAGAGTGACATCATCTAAACACACGCGTTCCAAGAGGTAGACTTTGGATTTATTCTTGTCTAGAATTCTCTCTCTTTCTCCCTTCATCGCTTTGGGGTCTGCTTAACTAGAAAAAATTGCTTATTGGGTGTATTCCTCGTGGTAGATTTTGTAGTGGTTTTTACGAATAAAACCCCTCTAAATCACATCTGTGCAACTATGTGCTTGCTTGACAAACTGTTGTTTCGTGTACCAATGTGCTCTGCGTTACTGCAAAAATTGGAAAGCTCTGTAGCAAGAGTGGGAAAGGGGAAAAGGGCTTTTTCTTATATGACATGGAGTACTGAATCTAAGCATTCATGCCGTTTACTTCTGTTCTTATATCCTACTACTTCTTCAGTTCCTTTGCACAAAGCAATTTGTTTATTTTAGAAGTCTTTGTGCAATCCAGATTTTAACCCGTGGCTAAATCTTTCCTACATGTGATTTGTTGAGTGCTGTCTTACTGCTTCATTCAATCTTAGTCTTTTTGTGTGATTTCTGCAATGGCAGCTTCCCAGTTAAACCAGAACAAGAGGAGAATATCGTGGATCATTCTGTAGAGACCTCTAATCGATTGAAGTTGGTAAGGACGCTTCGTTCTCGCGTTTTGATGTTAAAAGTAGCCCCCAAGCTATAGTGTCACAATTTCAAATGTTGGAAAAGGAAATAAAAGTAGATCAGAATGGATGATCTTCTACCTAGCTTCCTATATCCCTTTTCCTTCCCTGTAGTCTTGTTTTCTGATATGTCTATGATCCAATTTGCTAGTTCTATCTTCTGAAAAGGTAAAGAAGAACAAAGACCTCAAAGTACTGAGCTTTTGCAACTATTTGAGAATAATATTTTATTTACACTAGGATACGAGTCACGGGAATGACTGTAACGTGAGCGAGAAGAAACCATCATCCTCGGCTGAAATACAAAGTTCTCTGAGGCAAGAGGTAGTCTAACATAGATGATATATCTGCTCATGTTGGTAAATTGGAAAGATTCTTAATGTTTATAGTGGTTTAAGCCATATCCTTTGCAGATAATGCAGCTGGAGAGAAGATTACATGATCAAGTTGCAGTTCGATGTGCTCTTGAGAAAGCATTAGGTTATAAATCTTCTTCTCAAGATGTCAATGAAGTGACCGCAATGCCTAAGGTACCTCCTTCTGCTCTGTGTAGTTTTTTAATGAACTATACTATGTTGTAATCTTTAGCATCCTCTAACGAAGTTTCTCACTTTAGTTGATCTCAAACAAGAACTAAGATATTGTAATGACCCTTCTTGTCATTTTTAGTGTTTTATCTTCTGTGCATCGTTTAGAGCGTTCCTATAGCGATCCCAAGTCATTTATGACTTGCTGGGACTAACAGATCGGTCACCTGGTCGTTCGTTTGGTTATTGTGTGAGCTTTAGTATTTTTGAAGTCAAACTTAGCCTTTAACTTAAAGTTAAAACACCTAATCACACCAACTCACATTGAAAACTTCGGGAGTCATGTCAACAATGCTACTAGCCTAAAATGACCCTTCTGGAACTGATGGAATCGTCAGAATTGGATTCTGATGTCATCTTCTTGAACTTTTGATCGAAAATGATCGTTCAAGGTTCATAAGCTCCAAAAATACTAAAGCTCACACAATAACCAAACTAACGACCAGGTGACCGATCTGTCAGTCCCAGCAAGTCATAAATGACTTGGGATCGCTATAGGAACGCTCTAAACGATGCACAGAAGATAAAACACTAAAAATGACAAGAAGAGTCATTACATATATGCTATATATATGAGATACTTTTGAAGAGGTTGATTTTAGATATGTGATAATGCAAATATGTTAGCTTTACATATGCTCTCTGAGTTTGTGTAAACTTGGGAACTTCACACATTAATTTCTTTGTGAAGCTGATTTAGTAGTGTAAGCCTCAAATAGTCTATTTTTAGTTCCGAGTTTCTGCTAGGCTCATTGTTGTTGTTGGGTTATTTCCTTATATCTTAATTGATTGTTAACTGTATTTCTGTCTTATGTTGATTGTACTCTTCTCAACTATTTCCAGCCAGCAACAGAACTGATCAGAGATATTGCAGTACTAGAATTGGAAGTTGGGCATTTGGAACAGTATCTTCTCT</genome_strand>
        <mrna_strand>TCTTCACCTTCCCCTCTATTGCACAAAGCTATATTGGGAATGTGGGAGTAACAGATTTTTGGAGCAAAAGTGAGCATCTGCTACTTACACTTTCAACTCCTGGTCAAAAGGAGGGCTGCCTTTTCTTGTCCATTTGAGACTTTATGCAAAGACAAGTTGGGGGTTTTATTTCAAGCTGAGGTTTTTGAGGCCTGTTTTGGGTCTTTAGGACCAGTGGGTCTGTTTCCATTTTCCAAATATTTGATCTTTGATAGTTACCTGTTTGAAGTATGTACTG..................................................................................................ATATGGATTTTGAAGGGTTTAGCACCAGTAAATTTCCAGAAAATAGAGTGACATCATCTAAACACACGCGTTCCAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCCAGTTAAACCAGAACAAGAGGAGAATATCGTGGATCATTCTGTAGAGACCTCTAATCGATTGAAGTTG..................................................................................................................................................................................................................................................................................GATACGAGTCACGGGAATGACTGTAACGTGAGCGAGAAGAAACCATCATCCTCGGCTGAAATACAAAGTTCTCTGAGGCAAGAG.........................................................................................ATAATGCAGCTGGAGAGAAGATTACATGATCAAGTTGCAGTTCGATGTGCTCTTGAGAAAGCATTAGGTTATAAATCTTCTTCTCAAGATGTCAATGAAGTGACCGCAATGCCTAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCAACAGAACTGATCAGAGATATTGCAGTACTAGAATTGGAAGTTGGGCATTTGGAACAGTATCTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E281368" ref_strand="+" ref_description="SGN-E281368 	[cLEL-1-L20]">
      <seq>gcacgagcacaaagctatattgggaatgtgggagtaacagatttttggagcaggggtgagcatctgctacttacacttccacctcctggtcaaaaggagggctgccttttcttgtccatttgagactttatgcaaagacaagttgggggttttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="-" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="92442" stop="91692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92148" g_stop="91992" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="-" ref_id="SGN-E281368" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>157</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92148" e_stop="91992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATTGCACAAAGCTATATTGGGAATGTGGGAGTAACAGATTTTTGGAGCAAAAGTGAGCATCTGCTACTTACACTTTCAACTCCTGGTCAAAAGGAGGGCTGCCTTTTCTTGTCCATTTGAGACTTTATGCAAAGACAAGTTGGGGGTTTTATTT</genome_strand>
        <mrna_strand>GCACGAGCACAAAGCTATATTGGGAATGTGGGAGTAACAGATTTTTGGAGCAGGGGTGAGCATCTGCTACTTACACTTCCACCTCCTGGTCAAAAGGAGGGCTGCCTTTTCTTGTCCATTTGAGACTTTATGCAAAGACAAGTTGGGGGTTTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E204386" ref_strand="+" ref_description="SGN-E204386 	[cLEC-13-H5]">
      <seq>aaaaaatcattttccatggagtcttggattcagcactgttacaatgccgacagtgctgactcaattgaaatgctgaaggagagttcccaattggggtgtgcttgtccaaattcagcatgctcttctcaaacttgtgatcatatttacctctttgataatgattacgatgatgccaaagatatttatgggaagcctatgcgtggaaggtttccatatgatgagagaggtcggatcatgttggaggagggctaccttatctatgaatgcaatcaatggtgctcgtgcagtaaatcttgtcctaatagggtgttacagagtggagtgcgtctgaagctagaaatatacaaaaccgagacaaggggatgggcagtcacggcatgagaagcaatccttcgtggtacatttgcgtgtgaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="107682" stop="112577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107982" g_stop="108062" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108063" i_stop="111596" i_length="3534">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.784" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111597" g_stop="111758" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="243" r_length="162" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111759" i_stop="112038" i_length="280">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112039" g_stop="112155" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="360" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112156" i_stop="112221" i_length="66">
            <donor d_prob="0.874" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112222" g_stop="112277" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="416" r_length="56" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E204386" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107982" e_stop="108062"/>
          <exon e_start="111597" e_stop="111758"/>
          <exon e_start="112039" e_stop="112155"/>
          <exon e_start="112222" e_stop="112277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATCATTTTCGATGGAGTCTTGGATTCAGCACTGTCAGAATGCCGACAGTGCTGAGTCAATTGAAATGCTGAAGGAGGTAAATCCCTAAATGATGCTCATATATGCATCCATTCTGCTGTATATCTATGGTTGTAAATTTTTTATTGTTTGTTTTGCTTTTCTTTTGTTGTCTTTTTCTTGAGTGAAATTTATTACTTCTAATAATAATTATGAGTAATTTATTATAATAAATGTGTACTTGACTTCTTATGATTGAGTTTCTGTTTCCACACAACTGGAACTTTGGAGTTTTACTGCACCACCAAGGCAGTTATATGGATGGGTGTTACTCTTTTAAGAGTTGATTGCTGCCATTGAAAGTGAAGTTTTGCAAGGACTAGAGTATGATTGTTGTTGATGCATAAGAACATGTTTCATTGTCAAGAAGCAGAATCCAACTTCCTGTTGGCACTTTGGGATGTGGGAAGGACGTGTGTGTTAGTCCTTGATTATGTCTGCAGTTGCTTCACTGATGACACTTGCTACCTTCTCAATAGCATTTTACCTTATCAGTGGAAAACCCATTTGATTGAATAGATGCTGAACTGGTCTTTTGAAATTTCATCATAGTACTATCTTGGCGCAGACTAAAGCTTTTATCTTTCTATTCAGGAATTGGCTGATTCTGTACGTTGGGATGAGTTGAACTCACTTCCAAATGAAGGATTACATCTTGATCTGAACTCTCAGTGGAAGAATTGCAAATCTGAGGTTATGAAATGGTTTTCAGTTTCACATCCCGTATCTGATAGTGGAGATGTTGAACAGCCGAATAATGATAGCCCATTGAAAATGGAGCTTCAGCAGAGCAGAAAGAGGCCCAAGCTTGAAGTTCGTCGTGCTGAGGCACATGCTTTGCCAGTGGAATTTCAGGTGTCACATCAGGCTGTCCCTGTTGGATTTGATGCTGGTGGTCTTGGTGGCCATGATATCTCCAAAAATGTACTTTTAGAATCTGAACCAACAAAAGATGACATTTCTCTTGGAGAGGCTCCTCGAAATGGTTCTCCTGGTAGTGTGGCAGATAGATGGGGAGAGATTATTGTTCAAGCAGACAATTCCGACGTCATTCAGATGAAAGATGTGGAACTGACCCCTATAAATGGAGTTTCAAGTAATTCCTTTGATCATGGAAGTAAGAATCGCCAGTGTATGGCCTTTATTGAATCTAAAGGAAGACAATGTGTCAGATGGGCAAATGACGGTGATGTTTATTGTTGTGTGCACTTGGCCTCTCGCTTTGCCAGTACCTCAATTAAGGTGGATGCATCTCCACATGTTGATACACCTATGTGTGGAGGGACCACTGTTCTTGGGACTAAATGTAAACATCGCGCCTTATGCGGCTCTCCTTTCTGTAAGAAACACAGGCCCCGAGATGAGAATGGATTGGGTTCTATTTTGCCCGAGAGTAAACATAAACGCAAGCATGAGGACAATGTCCTTGGATTGGATACCTCAAATTGCAAAGATATTGTTCTCGCTGGAGCATTTGATGCTCCGCTCCAAGTTGATCCTATCTCAGTTCTTCGTGGAGAATCTTGCTATAGGAACAACTTGCTTGAGGTGCCTCAGTATTTGCAGAACAGACCAAGTGGTTCTGAGATGCATTGCATTGGTTTGTGGCCACATGGAAGTGAGCTTTGCATAGAAAGTCCAAAACGACATTCATTATACTGTGAGAAGCATTTACCAAGCTGGCTTAAACGTGCGAGGAATGGCAAGAGTAGGATTATTTCAAAGGAAGTATTCATAGAACTTTTGAAGGATTGCCAGTCCAGGGATCAAAGATTGTATTTACATCAAGCTTGTGAGCTTTTCTATAGACTTCTCAAAAGTTTACTTTCTTTGAGAAACCCAGTTCCAAAAGAAGTGCAATTCCAGTGGGTCATATCTGAAGCTTCTAAAGATCCAATGGTTGGTGAATTCTTAATGAAATTAGTTTGTACTGAAAAACAGAGGCTGAAAAGTGTTTGGGGATTTAGCGCTAGTGAAAATGCACAAGCTTCCTCTTACGTCAAAGAACCAATTCCATTATTAAGGATTACGGATAATGACCAGGATCATTGTGATGTCATAAAGTGCAAAATTTGCTCTGAGACGTTTCCAGATGAGCAAGTGCTTGGCACACACTGGATGGACAGCCACAAAAAGGAAGCCCAATGGCTTTTCAGGGGTTATGCTTGTGCTATCTGTCTGGATTCTTTTACTAATAAGAAAGTTTTGGAAACTCATGTGCAGGAAAGGCACCATTCACAGTTTGTTGAAAATTGCATGCTTTTTCAGTGTATTCCGTGTACTAGCAATTTTGGGAACTCAGAGGAGTTATGGTCCCACGTGCTCACCGCACATCCTTCCAGTTTTAGATGGTCTCATACTGCTCAAGAGAATCATTTTCCTGCAAGTGAGGTTGCATCAGAGAAGCCTGATATAGGCAACTCCTTGTCGACACAGAATTTCAATTCAGAGAACCAGTCTGGTTTCCGAAAATTCATCTGCAGATTTTGTGGCCTGAAATTTGACTTGCTACCTGATCTAGGCCGCCATCATCAGGCTGCTCACATGGGTCCTAATCCTGTTGGCTCTCATATCTCCAAGAAGGGCATCCGTTTATATGCTCATAAATTGAAGTCAGGAAGACTTAGCCGTCCAAAATTCAAGAAGGGTCTCGGATCTGTAGCATATAGGATTAGGAACAGAAATGCTCAGAATATGAAGAGACGCATCCTGTCATCGAACTCCATTATTAGTGGAAAACCTTCGATTCAACCTAGTGCAACCGAGGCAGCTGGTCTAGGTAGACTGGGAGATCCCCACTGCTTAGATATTGCAAAGATATTGTTTGCTGAGATTAAGAGAACAAAGCCACGGCCAAGTAACTCAGACATCTTATCAATAGCTCGGATTACTTGCTGCAAAGTAAGCCTCCAAGCATCACTTGAAGCAACATATGGAATTTTGCCAGAGCGCATGTATCTCAAAGCAGCAAAATTATGCAGTGAGCACAACATCCTTGTCAGCTGGCACCAAGATGGTTTCATTTGCCCCAAAGGATGTAGACCTGTTCATGACCCTTTCATAGTATCTTCATTACTTCCCCTTCCTGGTCAAGTGAATAGAACTGGAAGTATTCCACCGAATTCTGCTATTAGTGAGTGGACTATGGATGAGTGCCACTATGTCATAGATTCTCAACAGTTCAAGCACGAACCATCTGACAAAACTATTCTCTTGTGTGATGACATAAGCTTTGGACAGGAGTCAGTTCCGATAACTTGTGTGGTAGAAGAAAATCTTTTTGCCTCCCTCCACATTCTTGCTGATGGCTCCAATGGCCAAATTACCACAAGTTCTCTACCTTGGGAGAGCTTTACCTACGCAACAAAACCATTGATTGATCAATCCTTGGATCTTGCAATAGGGGTAACTTGTTTTGACTTCTAGTATTCCATGCAACTTCCATTTCATCTGGCGAAGCACCGGAACAAATGGTTTTCATAACCTCGAGTTGTTAATTTCCCTCAGTCACTGTCTCTTCTCCTCTCTAATCATCTTTTCCCTTTTATGGCAGAGTTCCCAATTGGGGTGTGCTTGTCCAAATTCAGCATGCTCTTCTCAAACTTGTGATCATATTTACCTCTTTGATAATGATTACGATGATGCCAAAGATATTTATGGGAAGCCTATGCGTGGAAGGTTCCCATATGATGAGAGAGGTCGGATCATGTTGGAGGTAAAAATATATTCCTTTGATTTTTCTTTCCTAATTTTGTGATTTGCAGTCCGTATTTTTTTTGGCTGATAATTAAAAAGATAAGGATGCCTTGTGTACTCTTGTCATTAAAAAGATAAGGATGCCCTGTGTATATCTTCTGCTCAATAATATGGATTTGTCTTATAACTGTGTTGGCTGAAGAGCATTACAGTATGATAATCATACATGATGCTAGAAATTTGTAGGGTGTGCTCGATTTTATAAGCATTTTGCGCCTGATTATCTACTTGATTTTCAGGAGGGCTACCTTATCTATGAATGCAATCAATGGTGCTCGTGCAGTAAATCTTGTCAGAATAGGGTTTTACAGAGTGGAGTGCGTGTGAAGCTAGAAATATACAAAACCGAGACAAGGGTAACACTTTGATCTGAAATTATGAAGGCGTGAGTTTCTCTAGTTATTTACTATTTTGTCTTACAGGGATGGGCAGTCAGGGCAAGAGAAGCAATCCTTCGTGGTACATTTGTGTGTGAATA</genome_strand>
        <mrna_strand>AAAAAATCATTTTCCATGGAGTCTTGGATTCAGCACTGTTACAATGCCGACAGTGCTGACTCAATTGAAATGCTGAAGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCCCAATTGGGGTGTGCTTGTCCAAATTCAGCATGCTCTTCTCAAACTTGTGATCATATTTACCTCTTTGATAATGATTACGATGATGCCAAAGATATTTATGGGAAGCCTATGCGTGGAAGGTTTCCATATGATGAGAGAGGTCGGATCATGTTGGAG........................................................................................................................................................................................................................................................................................GAGGGCTACCTTATCTATGAATGCAATCAATGGTGCTCGTGCAGTAAATCTTGTCCTAATAGGGTGTTACAGAGTGGAGTGCGTCTGAAGCTAGAAATATACAAAACCGAGACAAGG..................................................................GGATGGGCAGTCACGGCATGAGAAGCAATCCTTCGTGGTACATTTGCGTGTGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E379465" ref_strand="+" ref_description="SGN-E379465 	[TUS-1-H12]">
      <seq>cattttcgatgagagtcttggattcagcactgtcagaatgccgacagtgctgagttaatctgaaatgctgaaggagagttcccaattggggtgtgcttgtccaaattcagcatgctcttctcaaacttgtgatcatatttacctctttgataatgattacgatgatgccaaagatatttatgggaagcctatgcgtggaaggttcccatatgatgagagaggtcggatcatgttggaggagggctaccttatctatgaatgcaatcaatggtgctcgtgcagtaaatcttgtcagaatagggttttacagagtggagtgcgtgtgaagctagaaatatacaaaaccgagacaaggggatgggcagtcacggcaagagaagcaatccttcgtggtacatttgtgtgtgaatatgtaggagaggtacttgatgagcaggaagcaaataagagacgcaatatgtctgccacagaaggttgtgggtacttcttggagatagatgctcacatcaatgatatgagcagactgattgaagggcagtctccatatgtaattgatgctactaactatggaaacatttcccagtatatcaaccacagttgctcaccaaatctcgtgaattaccaagttctcgtggacagcatggatcatcatcttgcacatgttggtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="107689" stop="114135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107989" g_stop="108062" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108063" i_stop="111596" i_length="3534">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.784" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111597" g_stop="111758" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="238" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111759" i_stop="112038" i_length="280">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112039" g_stop="112155" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="355" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112156" i_stop="112221" i_length="66">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112222" g_stop="112325" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="459" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112326" i_stop="112420" i_length="95">
            <donor d_prob="0.879" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="112421" g_stop="112558" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="597" r_length="138" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="112559" i_stop="113762" i_length="1204">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.816" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="113763" g_stop="113835" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="670" r_length="73" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E379465" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107989" e_stop="108062"/>
          <exon e_start="111597" e_stop="111758"/>
          <exon e_start="112039" e_stop="112155"/>
          <exon e_start="112222" e_stop="112325"/>
          <exon e_start="112421" e_stop="112558"/>
          <exon e_start="113763" e_stop="113835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTCGATG-GAGTCTTGGATTCAGCACTGTCAGAATGCCGACAGTGCTGAGTCAAT-TGAAATGCTGAAGGAGGTAAATCCCTAAATGATGCTCATATATGCATCCATTCTGCTGTATATCTATGGTTGTAAATTTTTTATTGTTTGTTTTGCTTTTCTTTTGTTGTCTTTTTCTTGAGTGAAATTTATTACTTCTAATAATAATTATGAGTAATTTATTATAATAAATGTGTACTTGACTTCTTATGATTGAGTTTCTGTTTCCACACAACTGGAACTTTGGAGTTTTACTGCACCACCAAGGCAGTTATATGGATGGGTGTTACTCTTTTAAGAGTTGATTGCTGCCATTGAAAGTGAAGTTTTGCAAGGACTAGAGTATGATTGTTGTTGATGCATAAGAACATGTTTCATTGTCAAGAAGCAGAATCCAACTTCCTGTTGGCACTTTGGGATGTGGGAAGGACGTGTGTGTTAGTCCTTGATTATGTCTGCAGTTGCTTCACTGATGACACTTGCTACCTTCTCAATAGCATTTTACCTTATCAGTGGAAAACCCATTTGATTGAATAGATGCTGAACTGGTCTTTTGAAATTTCATCATAGTACTATCTTGGCGCAGACTAAAGCTTTTATCTTTCTATTCAGGAATTGGCTGATTCTGTACGTTGGGATGAGTTGAACTCACTTCCAAATGAAGGATTACATCTTGATCTGAACTCTCAGTGGAAGAATTGCAAATCTGAGGTTATGAAATGGTTTTCAGTTTCACATCCCGTATCTGATAGTGGAGATGTTGAACAGCCGAATAATGATAGCCCATTGAAAATGGAGCTTCAGCAGAGCAGAAAGAGGCCCAAGCTTGAAGTTCGTCGTGCTGAGGCACATGCTTTGCCAGTGGAATTTCAGGTGTCACATCAGGCTGTCCCTGTTGGATTTGATGCTGGTGGTCTTGGTGGCCATGATATCTCCAAAAATGTACTTTTAGAATCTGAACCAACAAAAGATGACATTTCTCTTGGAGAGGCTCCTCGAAATGGTTCTCCTGGTAGTGTGGCAGATAGATGGGGAGAGATTATTGTTCAAGCAGACAATTCCGACGTCATTCAGATGAAAGATGTGGAACTGACCCCTATAAATGGAGTTTCAAGTAATTCCTTTGATCATGGAAGTAAGAATCGCCAGTGTATGGCCTTTATTGAATCTAAAGGAAGACAATGTGTCAGATGGGCAAATGACGGTGATGTTTATTGTTGTGTGCACTTGGCCTCTCGCTTTGCCAGTACCTCAATTAAGGTGGATGCATCTCCACATGTTGATACACCTATGTGTGGAGGGACCACTGTTCTTGGGACTAAATGTAAACATCGCGCCTTATGCGGCTCTCCTTTCTGTAAGAAACACAGGCCCCGAGATGAGAATGGATTGGGTTCTATTTTGCCCGAGAGTAAACATAAACGCAAGCATGAGGACAATGTCCTTGGATTGGATACCTCAAATTGCAAAGATATTGTTCTCGCTGGAGCATTTGATGCTCCGCTCCAAGTTGATCCTATCTCAGTTCTTCGTGGAGAATCTTGCTATAGGAACAACTTGCTTGAGGTGCCTCAGTATTTGCAGAACAGACCAAGTGGTTCTGAGATGCATTGCATTGGTTTGTGGCCACATGGAAGTGAGCTTTGCATAGAAAGTCCAAAACGACATTCATTATACTGTGAGAAGCATTTACCAAGCTGGCTTAAACGTGCGAGGAATGGCAAGAGTAGGATTATTTCAAAGGAAGTATTCATAGAACTTTTGAAGGATTGCCAGTCCAGGGATCAAAGATTGTATTTACATCAAGCTTGTGAGCTTTTCTATAGACTTCTCAAAAGTTTACTTTCTTTGAGAAACCCAGTTCCAAAAGAAGTGCAATTCCAGTGGGTCATATCTGAAGCTTCTAAAGATCCAATGGTTGGTGAATTCTTAATGAAATTAGTTTGTACTGAAAAACAGAGGCTGAAAAGTGTTTGGGGATTTAGCGCTAGTGAAAATGCACAAGCTTCCTCTTACGTCAAAGAACCAATTCCATTATTAAGGATTACGGATAATGACCAGGATCATTGTGATGTCATAAAGTGCAAAATTTGCTCTGAGACGTTTCCAGATGAGCAAGTGCTTGGCACACACTGGATGGACAGCCACAAAAAGGAAGCCCAATGGCTTTTCAGGGGTTATGCTTGTGCTATCTGTCTGGATTCTTTTACTAATAAGAAAGTTTTGGAAACTCATGTGCAGGAAAGGCACCATTCACAGTTTGTTGAAAATTGCATGCTTTTTCAGTGTATTCCGTGTACTAGCAATTTTGGGAACTCAGAGGAGTTATGGTCCCACGTGCTCACCGCACATCCTTCCAGTTTTAGATGGTCTCATACTGCTCAAGAGAATCATTTTCCTGCAAGTGAGGTTGCATCAGAGAAGCCTGATATAGGCAACTCCTTGTCGACACAGAATTTCAATTCAGAGAACCAGTCTGGTTTCCGAAAATTCATCTGCAGATTTTGTGGCCTGAAATTTGACTTGCTACCTGATCTAGGCCGCCATCATCAGGCTGCTCACATGGGTCCTAATCCTGTTGGCTCTCATATCTCCAAGAAGGGCATCCGTTTATATGCTCATAAATTGAAGTCAGGAAGACTTAGCCGTCCAAAATTCAAGAAGGGTCTCGGATCTGTAGCATATAGGATTAGGAACAGAAATGCTCAGAATATGAAGAGACGCATCCTGTCATCGAACTCCATTATTAGTGGAAAACCTTCGATTCAACCTAGTGCAACCGAGGCAGCTGGTCTAGGTAGACTGGGAGATCCCCACTGCTTAGATATTGCAAAGATATTGTTTGCTGAGATTAAGAGAACAAAGCCACGGCCAAGTAACTCAGACATCTTATCAATAGCTCGGATTACTTGCTGCAAAGTAAGCCTCCAAGCATCACTTGAAGCAACATATGGAATTTTGCCAGAGCGCATGTATCTCAAAGCAGCAAAATTATGCAGTGAGCACAACATCCTTGTCAGCTGGCACCAAGATGGTTTCATTTGCCCCAAAGGATGTAGACCTGTTCATGACCCTTTCATAGTATCTTCATTACTTCCCCTTCCTGGTCAAGTGAATAGAACTGGAAGTATTCCACCGAATTCTGCTATTAGTGAGTGGACTATGGATGAGTGCCACTATGTCATAGATTCTCAACAGTTCAAGCACGAACCATCTGACAAAACTATTCTCTTGTGTGATGACATAAGCTTTGGACAGGAGTCAGTTCCGATAACTTGTGTGGTAGAAGAAAATCTTTTTGCCTCCCTCCACATTCTTGCTGATGGCTCCAATGGCCAAATTACCACAAGTTCTCTACCTTGGGAGAGCTTTACCTACGCAACAAAACCATTGATTGATCAATCCTTGGATCTTGCAATAGGGGTAACTTGTTTTGACTTCTAGTATTCCATGCAACTTCCATTTCATCTGGCGAAGCACCGGAACAAATGGTTTTCATAACCTCGAGTTGTTAATTTCCCTCAGTCACTGTCTCTTCTCCTCTCTAATCATCTTTTCCCTTTTATGGCAGAGTTCCCAATTGGGGTGTGCTTGTCCAAATTCAGCATGCTCTTCTCAAACTTGTGATCATATTTACCTCTTTGATAATGATTACGATGATGCCAAAGATATTTATGGGAAGCCTATGCGTGGAAGGTTCCCATATGATGAGAGAGGTCGGATCATGTTGGAGGTAAAAATATATTCCTTTGATTTTTCTTTCCTAATTTTGTGATTTGCAGTCCGTATTTTTTTTGGCTGATAATTAAAAAGATAAGGATGCCTTGTGTACTCTTGTCATTAAAAAGATAAGGATGCCCTGTGTATATCTTCTGCTCAATAATATGGATTTGTCTTATAACTGTGTTGGCTGAAGAGCATTACAGTATGATAATCATACATGATGCTAGAAATTTGTAGGGTGTGCTCGATTTTATAAGCATTTTGCGCCTGATTATCTACTTGATTTTCAGGAGGGCTACCTTATCTATGAATGCAATCAATGGTGCTCGTGCAGTAAATCTTGTCAGAATAGGGTTTTACAGAGTGGAGTGCGTGTGAAGCTAGAAATATACAAAACCGAGACAAGGGTAACACTTTGATCTGAAATTATGAAGGCGTGAGTTTCTCTAGTTATTTACTATTTTGTCTTACAGGGATGGGCAGTCAGGGCAAGAGAAGCAATCCTTCGTGGTACATTTGTGTGTGAATATGTAGGAGAGGTACTTGATGAGCAGGAAGCAAATAAGAGACGCAATAGGTTGTAAGCTTATAACACATTCTACTTGGTAGCTAAAATTTCTTTGTTGTATGTCATTGTACCTTATTTATATCTGGATCCACCTATTTGAGTAGGTCTGCCACAGAAGGTTGTGGGTACTTCTTGGAGATAGATGCTCACATCAATGATATGAGCAGACTGATTGAAGGGCAGTCTCCATATGTAATTGATGCTACTAACTATGGAAACATTTCCCGTTATATCAACCACAGGTACTGTTACAGCTCTCTTCTTGATTTGCTTTAATCTCAATGTGGTTATAATTGCCTTAATTTGCATTATATTGGGACCATCAGCTCCAATAGAAGTGTATAAGTAAAGGCAATGTGGAAATATCACGTCTCAAAGTTCCTTTATAAATGCCAAACGATGCTTATAATGGTCAGTTCATTAACTGAAGATTGACAAACCAACAAATCTATTATTACAATGCCAGCTTGAAATTCCTGTACTAGCCAAAAATTCAATTGAGTTCTACTCCAACTTGCTATAAAGATAAACGGTCTTCTTTTATGTAAAAATCACTGTTAAGCAGTCTGCAAGAATACCATCTTTTTGCTCCACCCGTGCATGGCACTCCTTGCCCACGGAGCAGCATACTGAAAAAAATTCACAATCAGGATACAACAACTGATTTACTATCTTTTTCTGTTCTTTTTTTTTTAACTTGCACTCTAGTGATCGATTTGCTTAACTCAGCTGCATACAAAGCATAATTCATGTTTTCAATTCCGCCAACTTGTTCTCACTTCTGCCATTCCGTGCTTCTACCTAACCTACCTGTGTGTTGCTGAGAGATTCAAATAGATACAACTATTTGGGATTACATTGGGTACACTGTTGTTGTATAACTGTGTGAAAGTTTGTCCTATGTCTGACATCTTTTATTTTTTGATGATTGTGTAGAGTTTCTGCATATGATTTACACCTTGGTTTCTTATGAAGTAGTTTCCCATAAACACTGCACCGCGTTTTTGCCAAGCAAGATAGCTTTTTGGTGGGACCCTTCTTATAGAATGTAGAACAATTATACTGGTGTAGTACGGATTGCATTAGGACATAATGAGTACTACAACCATGCTGCCTACATGAAAATCTTAATAGATGAAATGTTCCTACTTAGAATGTATATGAAATTAGGATGGCTTCCAATGGCCTGTAGATTGCTGCTTGTCAATGGAATGATCCTTAAATGTCTTATTTGTAACTCGAGGAGTTTTAAGTTCTCTTCTGCTGTAAAAGTAGCATACCCACAAACACAGAAAAGAAAAAAAAAACAATATTGATAAGTGAAACAGTAGCTGTTTTTTTTTTTATTTCCTGCTGCTGATCATGAGTTGATGTGTAATATTATTTCAGATTGCTTTCAGTTAAGTTCTTACGAGAATGTTTTGGTTCCTTTTTTGTTGCAATTAGTTGCTCACCAAATCTCGTGAATTACCAAGTTCTCGTGGAAAGCATGGATCATCAGCTTGCACATGTTGGTTTT</genome_strand>
        <mrna_strand>CATTTTCGATGAGAGTCTTGGATTCAGCACTGTCAGAATGCCGACAGTGCTGAGTTAATCTGAAATGCTGAAGGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCCCAATTGGGGTGTGCTTGTCCAAATTCAGCATGCTCTTCTCAAACTTGTGATCATATTTACCTCTTTGATAATGATTACGATGATGCCAAAGATATTTATGGGAAGCCTATGCGTGGAAGGTTCCCATATGATGAGAGAGGTCGGATCATGTTGGAG........................................................................................................................................................................................................................................................................................GAGGGCTACCTTATCTATGAATGCAATCAATGGTGCTCGTGCAGTAAATCTTGTCAGAATAGGGTTTTACAGAGTGGAGTGCGTGTGAAGCTAGAAATATACAAAACCGAGACAAGG..................................................................GGATGGGCAGTCACGGCAAGAGAAGCAATCCTTCGTGGTACATTTGTGTGTGAATATGTAGGAGAGGTACTTGATGAGCAGGAAGCAAATAAGAGACGCAATAT...............................................................................................GTCTGCCACAGAAGGTTGTGGGTACTTCTTGGAGATAGATGCTCACATCAATGATATGAGCAGACTGATTGAAGGGCAGTCTCCATATGTAATTGATGCTACTAACTATGGAAACATTTCCCAGTATATCAACCACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTCACCAAATCTCGTGAATTACCAAGTTCTCGTGGACAGCATGGATCATCATCTTGCACATGTTGGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E207488" ref_strand="+" ref_description="SGN-E207488 	[cLEC-36-C10]">
      <seq>aacatcgcgccttatgcggctctcctttctgtaagaaacacaggccccgagatgagaatggattgggttctattttgcccgagagtaaacataaacgcaagcatgaggacaatgtccttggattggatacctcaaattgcaaagatattgttctcgctggagcatttgatgctccgctccaagttgatcctatctcagttcttcgtggagaatcttgctataggaacaacttgcttgaggtgcctcagtatttgcagaacagaccaagtggttctgagatgcattgcattggtttgtggccacatggaagtgagctttgcatagaaagtccaaaacgacattcattatactgtgagaagcatttaccaagctggcttaaacgtgcgaggaatggcaagagtaggattatttcaaaggaagtattcatagaacttttgaaggattgccagtccagggatcaaagattgtatttacatcaagcttgtgagcttttctatagacttctcaaaagtttactttctttgagaaacccagttccaaaagaagtgcaattccagtgggtcatatctgaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="109053" stop="110227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109353" g_stop="109927" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E207488" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109353" e_stop="109927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCGCGCCTTATGCGGCTCTCCTTTCTGTAAGAAACACAGGCCCCGAGATGAGAATGGATTGGGTTCTATTTTGCCCGAGAGTAAACATAAACGCAAGCATGAGGACAATGTCCTTGGATTGGATACCTCAAATTGCAAAGATATTGTTCTCGCTGGAGCATTTGATGCTCCGCTCCAAGTTGATCCTATCTCAGTTCTTCGTGGAGAATCTTGCTATAGGAACAACTTGCTTGAGGTGCCTCAGTATTTGCAGAACAGACCAAGTGGTTCTGAGATGCATTGCATTGGTTTGTGGCCACATGGAAGTGAGCTTTGCATAGAAAGTCCAAAACGACATTCATTATACTGTGAGAAGCATTTACCAAGCTGGCTTAAACGTGCGAGGAATGGCAAGAGTAGGATTATTTCAAAGGAAGTATTCATAGAACTTTTGAAGGATTGCCAGTCCAGGGATCAAAGATTGTATTTACATCAAGCTTGTGAGCTTTTCTATAGACTTCTCAAAAGTTTACTTTCTTTGAGAAACCCAGTTCCAAAAGAAGTGCAATTCCAGTGGGTCATATCTGAAGCT</genome_strand>
        <mrna_strand>AACATCGCGCCTTATGCGGCTCTCCTTTCTGTAAGAAACACAGGCCCCGAGATGAGAATGGATTGGGTTCTATTTTGCCCGAGAGTAAACATAAACGCAAGCATGAGGACAATGTCCTTGGATTGGATACCTCAAATTGCAAAGATATTGTTCTCGCTGGAGCATTTGATGCTCCGCTCCAAGTTGATCCTATCTCAGTTCTTCGTGGAGAATCTTGCTATAGGAACAACTTGCTTGAGGTGCCTCAGTATTTGCAGAACAGACCAAGTGGTTCTGAGATGCATTGCATTGGTTTGTGGCCACATGGAAGTGAGCTTTGCATAGAAAGTCCAAAACGACATTCATTATACTGTGAGAAGCATTTACCAAGCTGGCTTAAACGTGCGAGGAATGGCAAGAGTAGGATTATTTCAAAGGAAGTATTCATAGAACTTTTGAAGGATTGCCAGTCCAGGGATCAAAGATTGTATTTACATCAAGCTTGTGAGCTTTTCTATAGACTTCTCAAAAGTTTACTTTCTTTGAGAAACCCAGTTCCAAAAGAAGTGCAATTCCAGTGGGTCATATCTGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E315362" ref_strand="+" ref_description="SGN-E315362 	[cTOA-24-P16]">
      <seq>ctctcctttctgtaagaaacacaggccccgagatgagaatggattgggttctattttgcccgagagtaaacataaacgcaagcatgaggacaatgtccttggattggatacctcaaattgcaaagatattgttctcgctggagcatttgatgctccgctccaagttgatcctatctcagttcttcgtggagaatcttgctataggaacaacttgcttgaggtgcctcagtatttgcagaacagaccaagtggttctgagatgcattgcattggtttgtggccacatggaagtgagctttgcatagaaagtccaaaacgacattcattatactgtgagaagcatttaccaagctggcttaaacgtgcgaggaatggcaagagtaggattatttcaaaggaagtattcatagaacttttgaaggattgccagtccagggatcaaagattgtatttacatcaagcttgtgagcttttctatagacttctcaaaagtttactttctttgagaaacccagttccaaaagaagtgcaattccagtgggtcatatctgaagcttctaaagatccaatggttggtgaattcttaatgaaattagtttgtactgaaaaacagaggctgaaaagtgtttggggatttagcgctagtgaaaatgcacaagcttcctcttacgtcaaagaacccaattcattattaaggattacggataatgaccaggatcattgtgatgtcataaagtgcaaatttgctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="109072" stop="110423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109372" g_stop="110123" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="751" r_length="751" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E315362" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109372" e_stop="110123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCCTTTCTGTAAGAAACACAGGCCCCGAGATGAGAATGGATTGGGTTCTATTTTGCCCGAGAGTAAACATAAACGCAAGCATGAGGACAATGTCCTTGGATTGGATACCTCAAATTGCAAAGATATTGTTCTCGCTGGAGCATTTGATGCTCCGCTCCAAGTTGATCCTATCTCAGTTCTTCGTGGAGAATCTTGCTATAGGAACAACTTGCTTGAGGTGCCTCAGTATTTGCAGAACAGACCAAGTGGTTCTGAGATGCATTGCATTGGTTTGTGGCCACATGGAAGTGAGCTTTGCATAGAAAGTCCAAAACGACATTCATTATACTGTGAGAAGCATTTACCAAGCTGGCTTAAACGTGCGAGGAATGGCAAGAGTAGGATTATTTCAAAGGAAGTATTCATAGAACTTTTGAAGGATTGCCAGTCCAGGGATCAAAGATTGTATTTACATCAAGCTTGTGAGCTTTTCTATAGACTTCTCAAAAGTTTACTTTCTTTGAGAAACCCAGTTCCAAAAGAAGTGCAATTCCAGTGGGTCATATCTGAAGCTTCTAAAGATCCAATGGTTGGTGAATTCTTAATGAAATTAGTTTGTACTGAAAAACAGAGGCTGAAAAGTGTTTGGGGATTTAGCGCTAGTGAAAATGCACAAGCTTCCTCTTACGTCAAAGAACCAATTCCATTATTAAGGATTACGGATAATGACCAGGATCATTGTGATGTCATAAAGTGCAAAATTTGCTCTG</genome_strand>
        <mrna_strand>CTCTCCTTTCTGTAAGAAACACAGGCCCCGAGATGAGAATGGATTGGGTTCTATTTTGCCCGAGAGTAAACATAAACGCAAGCATGAGGACAATGTCCTTGGATTGGATACCTCAAATTGCAAAGATATTGTTCTCGCTGGAGCATTTGATGCTCCGCTCCAAGTTGATCCTATCTCAGTTCTTCGTGGAGAATCTTGCTATAGGAACAACTTGCTTGAGGTGCCTCAGTATTTGCAGAACAGACCAAGTGGTTCTGAGATGCATTGCATTGGTTTGTGGCCACATGGAAGTGAGCTTTGCATAGAAAGTCCAAAACGACATTCATTATACTGTGAGAAGCATTTACCAAGCTGGCTTAAACGTGCGAGGAATGGCAAGAGTAGGATTATTTCAAAGGAAGTATTCATAGAACTTTTGAAGGATTGCCAGTCCAGGGATCAAAGATTGTATTTACATCAAGCTTGTGAGCTTTTCTATAGACTTCTCAAAAGTTTACTTTCTTTGAGAAACCCAGTTCCAAAAGAAGTGCAATTCCAGTGGGTCATATCTGAAGCTTCTAAAGATCCAATGGTTGGTGAATTCTTAATGAAATTAGTTTGTACTGAAAAACAGAGGCTGAAAAGTGTTTGGGGATTTAGCGCTAGTGAAAATGCACAAGCTTCCTCTTACGTCAAAGAACCCAATTCATTATTAAGGATTACGGATAATGACCAGGATCATTGTGATGTCATAAAGTGC-AAATTTGCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E315481" ref_strand="+" ref_description="SGN-E315481 	[cTOA-22-B24]">
      <seq>gcacacactggatggacagccacaaaaaggaagcccaatggcttttcaggggttatgcttgtgctatctgtctggattcttttactaataagaaagttttggaaactcatgtgcaggaaaggcaccattcacagtttgttgaaaattgcatgctttttcagtgtattccgtgtactagcaattttgggaactcagaggagttatggtcccacgtgctcaccgcacatccttccagttttagatggtctcatactgctcaagagaatcattttcctgcaagtgaggttgcatcagagaagcctgatataggcaactccttgtcgacacagaatttcaattcagagaaccagtctggtttccgaaaattcatctgcagattttgtggcctgaaatttgacttgctacctgatctaggccgccatcatcaggctgctcacatgggtcctaatcctgttggctctcatatctccaagaagggcatccgtttatatgctcataaattgaagtcaggaagacttagccgtccaaaattcaagaagggtctcggatctgtagcatataggattaggaacagaaatgctcagaatatgaagagacgcatcctgtcatcgaactccattattagtggaaaaccttcgattcaacctagtgcaaccgaggcagctggtctaggtagactgggagaatcccactgcttagatattgcaaagatattgtttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="109851" stop="111173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110151" g_stop="110873" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="723" r_length="723" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E315481" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110151" e_stop="110873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACACACTGGATGGACAGCCACAAAAAGGAAGCCCAATGGCTTTTCAGGGGTTATGCTTGTGCTATCTGTCTGGATTCTTTTACTAATAAGAAAGTTTTGGAAACTCATGTGCAGGAAAGGCACCATTCACAGTTTGTTGAAAATTGCATGCTTTTTCAGTGTATTCCGTGTACTAGCAATTTTGGGAACTCAGAGGAGTTATGGTCCCACGTGCTCACCGCACATCCTTCCAGTTTTAGATGGTCTCATACTGCTCAAGAGAATCATTTTCCTGCAAGTGAGGTTGCATCAGAGAAGCCTGATATAGGCAACTCCTTGTCGACACAGAATTTCAATTCAGAGAACCAGTCTGGTTTCCGAAAATTCATCTGCAGATTTTGTGGCCTGAAATTTGACTTGCTACCTGATCTAGGCCGCCATCATCAGGCTGCTCACATGGGTCCTAATCCTGTTGGCTCTCATATCTCCAAGAAGGGCATCCGTTTATATGCTCATAAATTGAAGTCAGGAAGACTTAGCCGTCCAAAATTCAAGAAGGGTCTCGGATCTGTAGCATATAGGATTAGGAACAGAAATGCTCAGAATATGAAGAGACGCATCCTGTCATCGAACTCCATTATTAGTGGAAAACCTTCGATTCAACCTAGTGCAACCGAGGCAGCTGGTCTAGGTAGACTGGGAGATCCCCACTGCTTAGATATTGCAAAGATATTGTTTGCTG</genome_strand>
        <mrna_strand>GCACACACTGGATGGACAGCCACAAAAAGGAAGCCCAATGGCTTTTCAGGGGTTATGCTTGTGCTATCTGTCTGGATTCTTTTACTAATAAGAAAGTTTTGGAAACTCATGTGCAGGAAAGGCACCATTCACAGTTTGTTGAAAATTGCATGCTTTTTCAGTGTATTCCGTGTACTAGCAATTTTGGGAACTCAGAGGAGTTATGGTCCCACGTGCTCACCGCACATCCTTCCAGTTTTAGATGGTCTCATACTGCTCAAGAGAATCATTTTCCTGCAAGTGAGGTTGCATCAGAGAAGCCTGATATAGGCAACTCCTTGTCGACACAGAATTTCAATTCAGAGAACCAGTCTGGTTTCCGAAAATTCATCTGCAGATTTTGTGGCCTGAAATTTGACTTGCTACCTGATCTAGGCCGCCATCATCAGGCTGCTCACATGGGTCCTAATCCTGTTGGCTCTCATATCTCCAAGAAGGGCATCCGTTTATATGCTCATAAATTGAAGTCAGGAAGACTTAGCCGTCCAAAATTCAAGAAGGGTCTCGGATCTGTAGCATATAGGATTAGGAACAGAAATGCTCAGAATATGAAGAGACGCATCCTGTCATCGAACTCCATTATTAGTGGAAAACCTTCGATTCAACCTAGTGCAACCGAGGCAGCTGGTCTAGGTAGACTGGGAGAATCCCACTGCTTAGATATTGCAAAGATATTGTTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E317229" ref_strand="+" ref_description="SGN-E317229 	[cTOA-28-K10]">
      <seq>acagtttgttgaaaattgcatgctttttcagtgtattccgtgtactagcaattttgggaactcagaggagttatggtcccacgtgctcaccgcacatccttccagttttagatggtctcatactgctcaagagaatcattttcctgcaagtgaggttgcatcagagaagcctgatataggcaactccttgtcgacacagaatttcaattcagagaaccagtctggtttccgaaaattcatctgcagattttgtggcctgaaatttgacttgctacctgatctaggccgccatcatcaggctgctcacatgggtcctaatcctgttggctctcatatctccaagaagggcatccgtttatatgctcataaattgaagtcaggaagacttagccgtccaaaattcaagaagggtctcggatctgtagcatataggattaggaacagaaatgctcagaatatgaagagacgcatcctgtcatcgaactccattattagtggaaaaccttcgattcaacctagtgcaaccgaggcagctggtctaggtagactgggagatccccactgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="109981" stop="111147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110281" g_stop="110847" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="567" r_length="567" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E317229" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110281" e_stop="110847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGTTTGTTGAAAATTGCATGCTTTTTCAGTGTATTCCGTGTACTAGCAATTTTGGGAACTCAGAGGAGTTATGGTCCCACGTGCTCACCGCACATCCTTCCAGTTTTAGATGGTCTCATACTGCTCAAGAGAATCATTTTCCTGCAAGTGAGGTTGCATCAGAGAAGCCTGATATAGGCAACTCCTTGTCGACACAGAATTTCAATTCAGAGAACCAGTCTGGTTTCCGAAAATTCATCTGCAGATTTTGTGGCCTGAAATTTGACTTGCTACCTGATCTAGGCCGCCATCATCAGGCTGCTCACATGGGTCCTAATCCTGTTGGCTCTCATATCTCCAAGAAGGGCATCCGTTTATATGCTCATAAATTGAAGTCAGGAAGACTTAGCCGTCCAAAATTCAAGAAGGGTCTCGGATCTGTAGCATATAGGATTAGGAACAGAAATGCTCAGAATATGAAGAGACGCATCCTGTCATCGAACTCCATTATTAGTGGAAAACCTTCGATTCAACCTAGTGCAACCGAGGCAGCTGGTCTAGGTAGACTGGGAGATCCCCACTGCTT</genome_strand>
        <mrna_strand>ACAGTTTGTTGAAAATTGCATGCTTTTTCAGTGTATTCCGTGTACTAGCAATTTTGGGAACTCAGAGGAGTTATGGTCCCACGTGCTCACCGCACATCCTTCCAGTTTTAGATGGTCTCATACTGCTCAAGAGAATCATTTTCCTGCAAGTGAGGTTGCATCAGAGAAGCCTGATATAGGCAACTCCTTGTCGACACAGAATTTCAATTCAGAGAACCAGTCTGGTTTCCGAAAATTCATCTGCAGATTTTGTGGCCTGAAATTTGACTTGCTACCTGATCTAGGCCGCCATCATCAGGCTGCTCACATGGGTCCTAATCCTGTTGGCTCTCATATCTCCAAGAAGGGCATCCGTTTATATGCTCATAAATTGAAGTCAGGAAGACTTAGCCGTCCAAAATTCAAGAAGGGTCTCGGATCTGTAGCATATAGGATTAGGAACAGAAATGCTCAGAATATGAAGAGACGCATCCTGTCATCGAACTCCATTATTAGTGGAAAACCTTCGATTCAACCTAGTGCAACCGAGGCAGCTGGTCTAGGTAGACTGGGAGATCCCCACTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E378832" ref_strand="-" ref_description="SGN-E378832 	[TUS-1-H12]">
      <seq>aaagcatggatcatcagcttgcacacgttggtttttatgcaaggcgagatatacttgcaggtgaagaactgacctatcactatagatacaaactattgcccggagaagggtctccatgcctgtgtggatcctctaattgcaggggacgtctttactaaatcctctacttaatagattgtgcattcagaggtttatgaattcagatctgtagagattcggaatcccagaggaatggtgtgttagcaggaagcaaaaagtttgtaattgtccttagtttatagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="113501" stop="114631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113801" g_stop="113850" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113851" i_stop="114098" i_length="248">
            <donor d_prob="0.959" d_score="0.98"/>
            <acceptor a_prob="0.467" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114099" g_stop="114331" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="284" r_length="234" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E378832" ref_strand="-">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378832" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113801" e_stop="113850"/>
          <exon e_start="114099" e_stop="114331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCATGGATCATCAGCTTGCACATGTTGGTTTTTATGCAAGGCGAGATGTATGTTCTCTCTCCTCTTTGGTAAATATTGGTCAAGTGACGATGCACCATTGTATTAGTCAGATCATGAAAAAAAAGATTATTGCTGCTTGTTCTTATTTTTTCTACTGGATTTTTTTTGGGTAACTTGATTTGACCTCAGCTAGGACTGGGTTTATCCCCTCATGTCTCAAGTTATTCATTGTGCCCCCTCCTCTTTCGCGTTTCATGACTGACATATTGTGTGCCCCCTCGATTTCCTTGAGCAGATACTTGCAGGTGAAGAACTGACCTATAACTATAGATACAAACTATTGCCCGGAGAAGGGTCTCCATGCCTGTGTGGATCCTCTAATTGCAGGGGACGTCTTTACTAAATCCTCTACTTAATAGATTGTGCATTCAGAGGTTTATGAATTCAGATCTGTAGAGATTCGGAATCCC-GAGGACTGGTGTGTTTGCAGGAAGCAAAAAGTTTGTAATTGTCCTTAGTTTATAGTTT</genome_strand>
        <mrna_strand>AAAGCATGGATCATCAGCTTGCACACGTTGGTTTTTATGCAAGGCGAGAT........................................................................................................................................................................................................................................................ATACTTGCAGGTGAAGAACTGACCTATCACTATAGATACAAACTATTGCCCGGAGAAGGGTCTCCATGCCTGTGTGGATCCTCTAATTGCAGGGGACGTCTTTACTAAATCCTCTACTTAATAGATTGTGCATTCAGAGGTTTATGAATTCAGATCTGTAGAGATTCGGAATCCCAGAGGAATGGTGTGTTAGCAGGAAGCAAAAAGTTTGTAATTGTCCTTAGTTTATAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E324093" ref_strand="+" ref_description="SGN-E324093 	[cTOC-3-B11]">
      <seq>aaaatctatgtgcccctctaatattaaaacagccttcatcggggtaaaatatatgggaatgggacttcgtttaagaatctgatcatatatatattcccggacatacaatttttaattaagagattttgaatttaaattttattttattttatttttttccgtattacattatttttactagggagcatggaaattttgcggcgcgaattctaaatgaaaaacaaaagaaacaaatagagaagacctaactatgagtatgatctgtttacccaatttaaaaatctcgaggctctttatatttcattttatttttaggacaaatatatgttgttgttctaattgaatatattcgataaataaagtaaacataaaggaattagagaaaaatttgataattgaagtagtgaaaaatgtaaattatggagtaatacctgttaacagaaaaattaacaggaaagctggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="-" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="117144" stop="116081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116844" g_stop="116381" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="-" ref_id="SGN-E324093" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116844" e_stop="116381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCTATGTGCCCCTCTAATATTAAAACAGCCTTCATCGTTGTAAAATATATGGGAATGGGACTTCGTTTAAGAATCTGATCATATATATATTCCCGGACATACAATTTTTAATTAAGAGATTTTGAATTTAAATTTTATTTTATTTTATTTTTTTCCGTATTACATTATTTTTACTAGGGAGCATGGAAATTTTGCGGCGCGAATTCTAAATGAAAAACAAAAGAAACAAATAGAGAAGACCTAACTATGAGTATGATCTGTTTACCCAATTTAAAAATCTCGAGGCTCTTTATATTTCATTTTATTTTTAGGACAAATATATGTTGTTGTTCTAATTGAATATATTCGATAAATAAAGTAAACATAAAGGAATTAGAGAAAAATTTGATAATTGAAGTAGTGAAAAATGTAAATTATGGAGTAATACCTGTTAACAGAAAAATTAACAGGAAAGCTGGAG</genome_strand>
        <mrna_strand>AAAATCTATGTGCCCCTCTAATATTAAAACAGCCTTCATCGGGGTAAAATATATGGGAATGGGACTTCGTTTAAGAATCTGATCATATATATATTCCCGGACATACAATTTTTAATTAAGAGATTTTGAATTTAAATTTTATTTTATTTTATTTTTTTCCGTATTACATTATTTTTACTAGGGAGCATGGAAATTTTGCGGCGCGAATTCTAAATGAAAAACAAAAGAAACAAATAGAGAAGACCTAACTATGAGTATGATCTGTTTACCCAATTTAAAAATCTCGAGGCTCTTTATATTTCATTTTATTTTTAGGACAAATATATGTTGTTGTTCTAATTGAATATATTCGATAAATAAAGTAAACATAAAGGAATTAGAGAAAAATTTGATAATTGAAGTAGTGAAAAATGTAAATTATGGAGTAATACCTGTTAACAGAAAAATTAACAGGAAAGCTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E327194" ref_strand="+" ref_description="SGN-E327194 	[cTOC-18-P16]">
      <seq>aatttttcaattcatataggaggggagctcatcattccactctgttaaatctctgatttggtggttcccttcatgcttgacatcaaagctttcattcaatcattttcaatgcctcttccttggacttttaaattaaaagatttggggttttcaagaaaatctcagatagctctctctgtttgtagttgagtatttgttgttttctctatttcaagaatttgggtgtttcaagaatcccttttgtcctgccattttacacctttaggagtggtgagtttcaactcttctttctttgtttcttgacaactatactgttaaaggtttgatcttttgttttgtttgctgtccttttggagaacgaaagaaaggaacaatttgtgttttttttattgttaagtgttggagtagtagctatcttttatcagaggggaaaagattagctctttgatgttttgtcctaattagtagatattcattcttatgatcaaagagttccttagttctgtgtagtcaacctgatttcaatttcatcatcccttaagtaaaaaaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="118481" stop="119634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118781" g_stop="119334" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E327194" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118781" e_stop="119334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTCAATTCATATAGGAGGGGAGCTCATCATTCCACTCTGTTAAATCTCTGATTTGGTGGTTCCCTTCATGCTTGACATCAAAGCTTTCATTCAATCATTTTCAATGCCTCTTCCTTGGACTTTTAAATTAAAAGATTTGGGGTTTTCAAGAAAATCTCAGATAGCTCTCTCTGTTTGTAGTTGAGTATTTGTTGTTTTCTCTATTTCAAGAATTTGGGTGTTTCAAGAATCCCTTTTGTCCTGCCATTTTACACCTTTAGGAGTGGTGAGTTTCAACTCTTCTTTCTTTGTTTCTTGACAACTATACTGTTAAAGGTTTGATCTTTTGTTTTGTTTGCTGTCCTTTTGGAGAACGAAAGAAAGGAACAATTTGTGTTTTTTTTATTGTTAAGTGTTGGAGTAGTAGCTATCTTTTATCAGAGGGGAAAAGATTAGCTCTTTGATGTTTTGTCCTAATTAGTAGATATTCATTCTTATGATCAAAGAGTTCCTTAGTTCTGTGTAGTCAACCTGATTTCAATTTCATCATCCCTTAAGTAAAAAAAATGC</genome_strand>
        <mrna_strand>AATTTTTCAATTCATATAGGAGGGGAGCTCATCATTCCACTCTGTTAAATCTCTGATTTGGTGGTTCCCTTCATGCTTGACATCAAAGCTTTCATTCAATCATTTTCAATGCCTCTTCCTTGGACTTTTAAATTAAAAGATTTGGGGTTTTCAAGAAAATCTCAGATAGCTCTCTCTGTTTGTAGTTGAGTATTTGTTGTTTTCTCTATTTCAAGAATTTGGGTGTTTCAAGAATCCCTTTTGTCCTGCCATTTTACACCTTTAGGAGTGGTGAGTTTCAACTCTTCTTTCTTTGTTTCTTGACAACTATACTGTTAAAGGTTTGATCTTTTGTTTTGTTTGCTGTCCTTTTGGAGAACGAAAGAAAGGAACAATTTGTGTTTTTTTTATTGTTAAGTGTTGGAGTAGTAGCTATCTTTTATCAGAGGGGAAAAGATTAGCTCTTTGATGTTTTGTCCTAATTAGTAGATATTCATTCTTATGATCAAAGAGTTCCTTAGTTCTGTGTAGTCAACCTGATTTCAATTTCATCATCCCTTAAGTAAAAAAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E336728" ref_strand="+" ref_description="SGN-E336728 	[cTOE-5-B1]">
      <seq>ttttaaattaaaagatttggggttttcaacaaaatcctagatagctctctctgtttggagttgagtatttggtggtttctctatttcaagaatttgggtgtttcaagaatcccttttgtcctgcccttgtacacctttacgagtggtgagtttcaactcttctttctttgtttcttgacaactatactggtaaaggtttgatctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="118606" stop="119412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118906" g_stop="119112" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E336728" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>207</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118906" e_stop="119112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAAATTAAAAGATTTGGGGTTTTCAAGAAAATCTCAGATAGCTCTCTCTGTTTGTAGTTGAGTATTTGTTGTTTTCTCTATTTCAAGAATTTGGGTGTTTCAAGAATCCCTTTTGTCCTGCCATTTTACACCTTTAGGAGTGGTGAGTTTCAACTCTTCTTTCTTTGTTTCTTGACAACTATACTGTTAAAGGTTTGATCTTTT</genome_strand>
        <mrna_strand>TTTTAAATTAAAAGATTTGGGGTTTTCAACAAAATCCTAGATAGCTCTCTCTGTTTGGAGTTGAGTATTTGGTGGTTTCTCTATTTCAAGAATTTGGGTGTTTCAAGAATCCCTTTTGTCCTGCCCTTGTACACCTTTACGAGTGGTGAGTTTCAACTCTTCTTTCTTTGTTTCTTGACAACTATACTGGTAAAGGTTTGATCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-OMR5jX/sgn_ests_tomato" ref_id="SGN-E227196" ref_strand="-" ref_description="SGN-E227196 	[cLEL-30-K1]">
      <seq>agtttcctcaagtcaggtgataattgtccaaatcttcagagagcatttgaagtctggtggcgtcgtacatttgtcagaccttatgcagagacaggaagtacccgcccattagaccatgttacgactccaaaggtaacagaacattagacgtttatggtatcatttaaaaggaaattgttgaagatcagtgttaagttgaattgaaggagacttctgttgtatgcaatgaagaaagctcgggggctctgtcgaatcaaggataaattactcatctatataaggtgtctaactgattccttgtgtgaatcatgtaaatttagagtatcatttgaattgtccaatttggtgtgttagtgatttgtaagaggtatgtaatacaagttggttgtgttaaaataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-lbVmY/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C02SLm0066K03.2" temp_strand="+" temp_description="C02SLm0066K03.2  submitted_to_sgn_as:C02Mbo0066K03 len=123077">
        <position start="122169" stop="123076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122469" g_stop="122862" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="395" polyA_stop="416"/>
      <MATCH_line gen_id="C02SLm0066K03.2" gen_strand="+" ref_id="SGN-E227196" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0066K03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227196" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="122469" e_stop="122862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTCCTCAAGTCAGGTGATAATTGTCCAAATCTTCAGAGAGCATTTGAAGTCTGGTGGCGTCGTACATTTGTCAGACCTTATGCAGAGACAGGAAGTACCCGCCCATTAGACCATGTTACGACTCCAAAGGTAACAGAACATTAGACGTTTATGGTATCATTTAAAAGGAAATTGTTGAAGATCAGTGTTAAGTTGAATTGAAGGAGACTTCTGTTGTATGCAATGAAGAAAGCTCGGGGGCTCTGTCAAATCAAGGATAAATTACTCATCTATATAAGGTGTCTAACTGATTCCTTGTGTGAATCATGTAAATTTAGAGTATCATTTGAATTGTCCAATTTGGTGTGTTAGTGATTTGTAAGAGGTATGTAATACAAGTTGGTTGTGTTAA</genome_strand>
        <mrna_strand>AGTTTCCTCAAGTCAGGTGATAATTGTCCAAATCTTCAGAGAGCATTTGAAGTCTGGTGGCGTCGTACATTTGTCAGACCTTATGCAGAGACAGGAAGTACCCGCCCATTAGACCATGTTACGACTCCAAAGGTAACAGAACATTAGACGTTTATGGTATCATTTAAAAGGAAATTGTTGAAGATCAGTGTTAAGTTGAATTGAAGGAGACTTCTGTTGTATGCAATGAAGAAAGCTCGGGGGCTCTGTCGAATCAAGGATAAATTACTCATCTATATAAGGTGTCTAACTGATTCCTTGTGTGAATCATGTAAATTTAGAGTATCATTTGAATTGTCCAATTTGGTGTGTTAGTGATTTGTAAGAGGTATGTAATACAAGTTGGTTGTGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>207</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="8649" PGL_stop="11105"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8649" e_stop="8762"/>
            <exon e_start="8864" e_stop="8953"/>
            <exon e_start="9386" e_stop="9492"/>
            <exon e_start="9573" e_stop="9721"/>
            <exon e_start="10573" e_stop="10655"/>
            <exon e_start="10740" e_stop="10787"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.652" e_score="1.000"/>
          <exon-intron don_prob="0.868" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.829" acc_prob="0.883" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.848" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.752" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8649" e_stop="8762" e_length="114"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.652">
            <gDNA_intron_boundary i_start="8763" i_stop="8863" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8864" e_stop="8953" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.868" acc_prob="0.978">
            <gDNA_intron_boundary i_start="8954" i_stop="9385" i_length="432"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9386" e_stop="9492" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="0.829" acc_prob="0.883">
            <gDNA_intron_boundary i_start="9493" i_stop="9572" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="9573" e_stop="9721" e_length="149"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.848">
            <gDNA_intron_boundary i_start="9722" i_stop="10572" i_length="851"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="10573" e_stop="10655" e_length="83"/>
          </exon>
          <intron i_serial="5" don_prob="0.972" acc_prob="0.752">
            <gDNA_intron_boundary i_start="10656" i_stop="10739" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="10740" e_stop="10787" e_length="48"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8649" stop="8762"/>
              <exon start="8864" stop="8953"/>
              <exon start="9386" stop="9492"/>
              <exon start="9573" stop="9721"/>
              <exon start="10573" stop="10655"/>
              <exon start="10740" stop="10787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8649" stop="8762"/>
              <exon start="8864" stop="8953"/>
              <exon start="9386" stop="9492"/>
              <exon start="9573" stop="9708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260279" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCGATGAAGAGACATTAATGAGAATTGTTCCTTTCTGGAGAACGTCCCTCAGAGATACAAATACTCCAAGTCAAAAGTATTACATTGATCATTTTGAGATACATCCTGTTAAG : GTTGTGGCAAGCTTTCTTCCAGGGGAATCTTATGCTAACCATAGCTCCACGCAAGAGACACTAAGATCTTTACTTCACAGTGTTATAAAG : ATACCTCCTGTCAAAAATATGACCGTAGAGCTCAATGGCATCCTTGTAACTCATGCATTGGTCACTTTGCGGGAGTTGTCAATTAAATGTGCCCAACATTATTCTTG : GTATGCAATGAGAGCAGTATACATTGCAAAGGGAAGTCCCTTGCTGCCACCAGCTTTTGCTTCTATATTTGACGACTTAGCTTCATCATCTCTGGATGTTTTCTTTGATCCTTCTACTGGCCATCTTAATCTTCCTGGCCTCACAATTG : GTACTTTCAAACTCATTCGTAAGTGTATTGATGGTAAAGAGTTTTCTGGAACAAAAAGATACTTTGGCGATCTAGGGAAAACT : TTTAAGTCAGCAGGATCAAATATCCTGTTTGCTGCTGTCACTGAAATA</gDNA_template>
            <first_frame> L  D  E  E  T  L  M  R  I  V  P  F  W  R  T  S  L  R  D  T  N  T  P  S  Q  K  Y  Y  I  D  H  F  E  I  H  P  V  K  :  V  V  A  S  F  L  P  G  E  S  Y  A  N  H  S  S  T  Q  E  T  L  R  S  L  L  H  S  V  I  K  :  I  P  P  V  K  N  M  T  V  E  L  N  G  I  L  V  T  H  A  L  V  T  L  R  E  L  S  I  K  C  A  Q  H  Y  S  W :   Y  A  M  R  A  V  Y  I  A  K  G  S  P  L  L  P  P  A  F  A  S  I  F  D  D  L  A  S  S  S  L  D  V  F  F  D  P  S  T  G  H  L  N  L  P  G  L  T  I   : G  T  F  K  L  I  R  K  C  I  D  G  K  E  F  S  G  T  K  R  Y  F  G  D  L  G  K  T  :  F  K  S  A  G  S  N  I  L  F  A  A  V  T  E  I </first_frame>
            <second_frame>  S  M  K  R  H  *  *  E  L  F  L  S  G  E  R  P  S  E  I  Q  I  L  Q  V  K  S  I  T  L  I  I  L  R  Y  I  L  L  R :   L  W  Q  A  F  F  Q  G  N  L  M  L  T  I  A  P  R  K  R  H  *  D  L  Y  F  T  V  L  *  R :   Y  L  L  S  K  I  *  P  *  S  S  M  A  S  L  *  L  M  H  W  S  L  C  G  S  C  Q  L  N  V  P  N  I  I  L   : G  M  Q  *  E  Q  Y  T  L  Q  R  E  V  P  C  C  H  Q  L  L  L  L  Y  L  T  T  *  L  H  H  L  W  M  F  S  L  I  L  L  L  A  I  L  I  F  L  A  S  Q  L  :  V  L  S  N  S  F  V  S  V  L  M  V  K  S  F  L  E  Q  K  D  T  L  A  I  *  G  K  L :   L  S  Q  Q  D  Q  I  S  C  L  L  L  S  L  K   </second_frame>
            <third_frame>   R  *  R  D  I  N  E  N  C  S  F  L  E  N  V  P  Q  R  Y  K  Y  S  K  S  K  V  L  H  *  S  F  *  D  T  S  C  *   : G  C  G  K  L  S  S  R  G  I  L  C  *  P  *  L  H  A  R  D  T  K  I  F  T  S  Q  C  Y  K   : D  T  S  C  Q  K  Y  D  R  R  A  Q  W  H  P  C  N  S  C  I  G  H  F  A  G  V  V  N  *  M  C  P  T  L  F  L  :  V  C  N  E  S  S  I  H  C  K  G  K  S  L  A  A  T  S  F  C  F  Y  I  *  R  L  S  F  I  I  S  G  C  F  L  *  S  F  Y  W  P  S  *  S  S  W  P  H  N  W :   Y  F  Q  T  H  S  *  V  Y  *  W  *  R  V  F  W  N  K  K  I  L  W  R  S  R  E  N   : F  *  V  S  R  I  K  Y  P  V  C  C  C  H  *  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0066K03.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8649" stop="8762"/>
                    <exon start="8864" stop="8953"/>
                    <exon start="9386" stop="9492"/>
                    <exon start="9573" stop="9721"/>
                    <exon start="10573" stop="10655"/>
                    <exon start="10740" stop="10787"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDEETLMRIVPFWRTSLRDTNTPSQKYYIDHFEIHPVKVVASFLPGESYANHSSTQETLRSLLHSVIKIPPVKNMTVELNGILVTHALVTLRELSIKCAQHYSWYAMRAVYIAKGSPLLPPAFASIFDDLASSSLDVFFDPSTGHLNLPGLTIGTFKLIRKCIDGKEFSGTKRYFGDLGKTFKSAGSNILFAAVTEI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="9384" e_stop="9492"/>
            <exon e_start="9573" e_stop="9721"/>
            <exon e_start="10573" e_stop="10655"/>
            <exon e_start="10740" e_stop="10835"/>
            <exon e_start="10983" e_stop="11105"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.829" acc_prob="0.883" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.848" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.752" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9384" e_stop="9492" e_length="109"/>
          </exon>
          <intron i_serial="1" don_prob="0.829" acc_prob="0.883">
            <gDNA_intron_boundary i_start="9493" i_stop="9572" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9573" e_stop="9721" e_length="149"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.848">
            <gDNA_intron_boundary i_start="9722" i_stop="10572" i_length="851"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10573" e_stop="10655" e_length="83"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.752">
            <gDNA_intron_boundary i_start="10656" i_stop="10739" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10740" e_stop="10835" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.980">
            <gDNA_intron_boundary i_start="10836" i_stop="10982" i_length="147"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="10983" e_stop="11105" e_length="123"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9384" stop="9492"/>
              <exon start="9573" stop="9721"/>
              <exon start="10573" stop="10655"/>
              <exon start="10740" stop="10835"/>
              <exon start="10983" stop="11105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9384" stop="9492"/>
              <exon start="9573" stop="9721"/>
              <exon start="10573" stop="10655"/>
              <exon start="10740" stop="10761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239490" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATACCTCCTGTCAAAAATATGACCGTAGAGCTCAATGGCATCCTTGTAACTCATGCATTGGTCACTTTGCGGGAGTTGTCAATTAAATGTGCCCAACATTATTCTTG : GTATGCAATGAGAGCAGTATACATTGCAAAGGGAAGTCCCTTGCTGCCACCAGCTTTTGCTTCTATATTTGACGACTTAGCTTCATCATCTCTGGATGTTTTCTTTGATCCTTCTACTGGCCATCTTAATCTTCCTGGCCTCACAATTG : GTACTTTCAAACTCATTCGTAAGTGTATTGATGGTAAAGAGTTTTCTGGAACAAAAAGATACTTTGGCGATCTAGGGAAAACT : TTTAAGTCAGCAGGATCAAATATCCTGTTTGCTGCTGTCACTGAAATATCAGACTCGGTTCTGAAAGGAGCAGAAGCTAGTGGTTTAAATGGAATG : GTGAATGGTTTCCATCAAGGAATACTTAAATTGGCAATGGAACCTACATTACTGGGGAGTGCTTTCATGGAAGGTGGCCCTGATCGAAAAATTGGGCTTGATCGAAGTCCTGGGGTTGATGAG</gDNA_template>
            <first_frame> R  Y  L  L  S  K  I  *  P  *  S  S  M  A  S  L  *  L  M  H  W  S  L  C  G  S  C  Q  L  N  V  P  N  I  I  L   : G  M  Q  *  E  Q  Y  T  L  Q  R  E  V  P  C  C  H  Q  L  L  L  L  Y  L  T  T  *  L  H  H  L  W  M  F  S  L  I  L  L  L  A  I  L  I  F  L  A  S  Q  L  :  V  L  S  N  S  F  V  S  V  L  M  V  K  S  F  L  E  Q  K  D  T  L  A  I  *  G  K  L :   L  S  Q  Q  D  Q  I  S  C  L  L  L  S  L  K  Y  Q  T  R  F  *  K  E  Q  K  L  V  V  *  M  E  W :   *  M  V  S  I  K  E  Y  L  N  W  Q  W  N  L  H  Y  W  G  V  L  S  W  K  V  A  L  I  E  K  L  G  L  I  E  V  L  G  L  M   </first_frame>
            <second_frame>  D  T  S  C  Q  K  Y  D  R  R  A  Q  W  H  P  C  N  S  C  I  G  H  F  A  G  V  V  N  *  M  C  P  T  L  F  L  :  V  C  N  E  S  S  I  H  C  K  G  K  S  L  A  A  T  S  F  C  F  Y  I  *  R  L  S  F  I  I  S  G  C  F  L  *  S  F  Y  W  P  S  *  S  S  W  P  H  N  W :   Y  F  Q  T  H  S  *  V  Y  *  W  *  R  V  F  W  N  K  K  I  L  W  R  S  R  E  N   : F  *  V  S  R  I  K  Y  P  V  C  C  C  H  *  N  I  R  L  G  S  E  R  S  R  S  *  W  F  K  W  N   : G  E  W  F  P  S  R  N  T  *  I  G  N  G  T  Y  I  T  G  E  C  F  H  G  R  W  P  *  S  K  N  W  A  *  S  K  S  W  G  *  *  </second_frame>
            <third_frame>   I  P  P  V  K  N  M  T  V  E  L  N  G  I  L  V  T  H  A  L  V  T  L  R  E  L  S  I  K  C  A  Q  H  Y  S  W :   Y  A  M  R  A  V  Y  I  A  K  G  S  P  L  L  P  P  A  F  A  S  I  F  D  D  L  A  S  S  S  L  D  V  F  F  D  P  S  T  G  H  L  N  L  P  G  L  T  I   : G  T  F  K  L  I  R  K  C  I  D  G  K  E  F  S  G  T  K  R  Y  F  G  D  L  G  K  T  :  F  K  S  A  G  S  N  I  L  F  A  A  V  T  E  I  S  D  S  V  L  K  G  A  E  A  S  G  L  N  G  M  :  V  N  G  F  H  Q  G  I  L  K  L  A  M  E  P  T  L  L  G  S  A  F  M  E  G  G  P  D  R  K  I  G  L  D  R  S  P  G  V  D  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0066K03.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9386" stop="9492"/>
                    <exon start="9573" stop="9721"/>
                    <exon start="10573" stop="10655"/>
                    <exon start="10740" stop="10835"/>
                    <exon start="10983" stop="11105"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IPPVKNMTVELNGILVTHALVTLRELSIKCAQHYSWYAMRAVYIAKGSPLLPPAFASIFDDLASSSLDVFFDPSTGHLNLPGLTIGTFKLIRKCIDGKEFSGTKRYFGDLGKTFKSAGSNILFAAVTEISDSVLKGAEASGLNGMVNGFHQGILKLAMEPTLLGSAFMEGGPDRKIGLDRSPGVDE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="13454" PGL_stop="13239"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13454" e_stop="13239"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13454" e_stop="13239" e_length="216"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13454" stop="13239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544991" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCATACAATGTTCAATAGAATGTAGAAAGTTTCTGTGCTAAATTCTTGTGTAGGCATACAGGAAGACCAAAAAAAAATTTATTTATTTTTGCTTTGTTATATACATTTGGAATAAAAACGAAAGGGGAAGGATCATCTATTATCCTCTCATATGAACAAAATGCACTTGCTATTTATTCTTTTTCCTAGAAAAAGCTTTAAGACAAGAAAATGTT</gDNA_template>
            <first_frame> F  I  Q  C  S  I  E  C  R  K  F  L  C  *  I  L  V  *  A  Y  R  K  T  K  K  K  F  I  Y  F  C  F  V  I  Y  I  W  N  K  N  E  R  G  R  I  I  Y  Y  P  L  I  *  T  K  C  T  C  Y  L  F  F  F  L  E  K  A  L  R  Q  E  N  V </first_frame>
            <second_frame>  S  Y  N  V  Q  *  N  V  E  S  F  C  A  K  F  L  C  R  H  T  G  R  P  K  K  N  L  F  I  F  A  L  L  Y  T  F  G  I  K  T  K  G  E  G  S  S  I  I  L  S  Y  E  Q  N  A  L  A  I  Y  S  F  S  *  K  K  L  *  D  K  K  M   </second_frame>
            <third_frame>   H  T  M  F  N  R  M  *  K  V  S  V  L  N  S  C  V  G  I  Q  E  D  Q  K  K  I  Y  L  F  L  L  C  Y  I  H  L  E  *  K  R  K  G  K  D  H  L  L  S  S  H  M  N  K  M  H  L  L  F  I  L  F  P  R  K  S  F  K  T  R  K  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0066K03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="13239" PGL_stop="13454"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13239" e_stop="13454"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13239" e_stop="13454" e_length="216"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13239" stop="13454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13253" stop="13454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308892" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACATTTTCTTGTCTTAAAGCTTTTTCTAGGAAAAAGAATAAATAGCAAGTGCATTTTGTTCATATGAGAGGATAATAGATGATCCTTCCCCTTTCGTTTTTATTCCAAATGTATATAACAAAGCAAAAATAAATAAATTTTTTTTTGGTCTTCCTGTATGCCTACACAAGAATTTAGCACAGAAACTTTCTACATTCTATTGAACATTGTATGAA</gDNA_template>
            <first_frame> N  I  F  L  S  *  S  F  F  *  E  K  E  *  I  A  S  A  F  C  S  Y  E  R  I  I  D  D  P  S  P  F  V  F  I  P  N  V  Y  N  K  A  K  I  N  K  F  F  F  G  L  P  V  C  L  H  K  N  L  A  Q  K  L  S  T  F  Y  *  T  L  Y  E </first_frame>
            <second_frame>  T  F  S  C  L  K  A  F  S  R  K  K  N  K  *  Q  V  H  F  V  H  M  R  G  *  *  M  I  L  P  L  S  F  L  F  Q  M  Y  I  T  K  Q  K  *  I  N  F  F  L  V  F  L  Y  A  Y  T  R  I  *  H  R  N  F  L  H  S  I  E  H  C  M   </second_frame>
            <third_frame>   H  F  L  V  L  K  L  F  L  G  K  R  I  N  S  K  C  I  L  F  I  *  E  D  N  R  *  S  F  P  F  R  F  Y  S  K  C  I  *  Q  S  K  N  K  *  I  F  F  W  S  S  C  M  P  T  Q  E  F  S  T  E  T  F  Y  I  L  L  N  I  V  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0066K03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="13964" PGL_stop="14333"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13964" e_stop="14333"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="13964" e_stop="14333" e_length="370"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13964" stop="14333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13966" stop="14263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239522" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTATGTTGTGAGATACAAAAAAATATGGCTTTTGCGATATCCAAAGAGAAAATAGGCAGTGATGATCAAGATAGTGTCGAGACAGAGAGAGTAATAAGTAGCCAACTCTATTTGAAGTCATCGTCCCATGAAAATCTTGACAAAAATGTTGTGCTGAGGAGACTTCGTCACCATAAATACTTGCAAAAGGTTCGTGGAAATTTGAAGACTCTATTGGACAGTTATTCGACAAGGGATTATTATGAGCACAAGTGGCTTGAACAGGGCGACGTTTTCTGCTCCCCTTAGCATATATATTTCCCTCCTTGTACCAAACATCCTTACCTCTCTGTCTCTTGAGTTTCTGTGGGCGGAGCCTAAATTTGAAG</gDNA_template>
            <first_frame> F  Y  V  V  R  Y  K  K  I  W  L  L  R  Y  P  K  R  K  *  A  V  M  I  K  I  V  S  R  Q  R  E  *  *  V  A  N  S  I  *  S  H  R  P  M  K  I  L  T  K  M  L  C  *  G  D  F  V  T  I  N  T  C  K  R  F  V  E  I  *  R  L  Y  W  T  V  I  R  Q  G  I  I  M  S  T  S  G  L  N  R  A  T  F  S  A  P  L  S  I  Y  I  S  L  L  V  P  N  I  L  T  S  L  S  L  E  F  L  W  A  E  P  K  F  E  </first_frame>
            <second_frame>  F  M  L  *  D  T  K  K  Y  G  F  C  D  I  Q  R  E  N  R  Q  *  *  S  R  *  C  R  D  R  E  S  N  K  *  P  T  L  F  E  V  I  V  P  *  K  S  *  Q  K  C  C  A  E  E  T  S  S  P  *  I  L  A  K  G  S  W  K  F  E  D  S  I  G  Q  L  F  D  K  G  L  L  *  A  Q  V  A  *  T  G  R  R  F  L  L  P  L  A  Y  I  F  P  S  L  Y  Q  T  S  L  P  L  C  L  L  S  F  C  G  R  S  L  N  L  K </second_frame>
            <third_frame>   L  C  C  E  I  Q  K  N  M  A  F  A  I  S  K  E  K  I  G  S  D  D  Q  D  S  V  E  T  E  R  V  I  S  S  Q  L  Y  L  K  S  S  S  H  E  N  L  D  K  N  V  V  L  R  R  L  R  H  H  K  Y  L  Q  K  V  R  G  N  L  K  T  L  L  D  S  Y  S  T  R  D  Y  Y  E  H  K  W  L  E  Q  G  D  V  F  C  S  P  *  H  I  Y  F  P  P  C  T  K  H  P  Y  L  S  V  S  *  V  S  V  G  G  A  *  I  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0066K03.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13966" stop="14253"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LCCEIQKNMAFAISKEKIGSDDQDSVETERVISSQLYLKSSSHENLDKNVVLRRLRHHKYLQKVRGNLKTLLDSYSTRDYYEHKWLEQGDVFCSP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="15102" PGL_stop="17576"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15102" e_stop="15637"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15102" e_stop="15637" e_length="536"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15102" stop="15576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15103" stop="15637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241363" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAGCAAAAACCTTCGTTCTCTGAGTCTCAGAATGTGAATCAAGGTGGCGAGAATGGAAACTCTGTAATAAGTAGTGAGCTCTATTTGAAATCATCGACTGATCACCAAAATCTTGACAAAAATGTTGTGTTGAGGAGACTTCGTTTTCACAAAGTTCGTGCAAAGTTGCAGGGTCTATTGGACACAAGGAATTATGATTATTACGAGCACAAGTGGTTAGAACAGGGCGACGTTTTCTGCTCCCCCTAGGCCCTCTCTCTCTCTGTTTTTGTCTTCTGTGCCTAAGATTTAAAGTAATGACGAGTTCAATTTTAACATCAAATATATTGCAATCATCATCATATTATTGGTTATAGAGAAATTTCCTATTTCTTTAAGGTTTAGTAACATATATTAGTATAAGTTGAACCATGTAAATATCGCTTCCTTTTCTGTTTAGATAATAATGCACTTTTCTCGTGTTTCTGCTCTTTCAAATAAAATTGAGTATCAAACTTGTGTTCCGTCAAACCACGTACTTCACATAAATTGGAA</gDNA_template>
            <first_frame> K  S  K  N  L  R  S  L  S  L  R  M  *  I  K  V  A  R  M  E  T  L  *  *  V  V  S  S  I  *  N  H  R  L  I  T  K  I  L  T  K  M  L  C  *  G  D  F  V  F  T  K  F  V  Q  S  C  R  V  Y  W  T  Q  G  I  M  I  I  T  S  T  S  G  *  N  R  A  T  F  S  A  P  P  R  P  S  L  S  L  F  L  S  S  V  P  K  I  *  S  N  D  E  F  N  F  N  I  K  Y  I  A  I  I  I  I  L  L  V  I  E  K  F  P  I  S  L  R  F  S  N  I  Y  *  Y  K  L  N  H  V  N  I  A  S  F  S  V  *  I  I  M  H  F  S  R  V  S  A  L  S  N  K  I  E  Y  Q  T  C  V  P  S  N  H  V  L  H  I  N  W   </first_frame>
            <second_frame>  R  A  K  T  F  V  L  *  V  S  E  C  E  S  R  W  R  E  W  K  L  C  N  K  *  *  A  L  F  E  I  I  D  *  S  P  K  S  *  Q  K  C  C  V  E  E  T  S  F  S  Q  S  S  C  K  V  A  G  S  I  G  H  K  E  L  *  L  L  R  A  Q  V  V  R  T  G  R  R  F  L  L  P  L  G  P  L  S  L  C  F  C  L  L  C  L  R  F  K  V  M  T  S  S  I  L  T  S  N  I  L  Q  S  S  S  Y  Y  W  L  *  R  N  F  L  F  L  *  G  L  V  T  Y  I  S  I  S  *  T  M  *  I  S  L  P  F  L  F  R  *  *  C  T  F  L  V  F  L  L  F  Q  I  K  L  S  I  K  L  V  F  R  Q  T  T  Y  F  T  *  I  G  </second_frame>
            <third_frame>   E  Q  K  P  S  F  S  E  S  Q  N  V  N  Q  G  G  E  N  G  N  S  V  I  S  S  E  L  Y  L  K  S  S  T  D  H  Q  N  L  D  K  N  V  V  L  R  R  L  R  F  H  K  V  R  A  K  L  Q  G  L  L  D  T  R  N  Y  D  Y  Y  E  H  K  W  L  E  Q  G  D  V  F  C  S  P  *  A  L  S  L  S  V  F  V  F  C  A  *  D  L  K  *  *  R  V  Q  F  *  H  Q  I  Y  C  N  H  H  H  I  I  G  Y  R  E  I  S  Y  F  F  K  V  *  *  H  I  L  V  *  V  E  P  C  K  Y  R  F  L  F  C  L  D  N  N  A  L  F  S  C  F  C  S  F  K  *  N  *  V  S  N  L  C  S  V  K  P  R  T  S  H  K  L  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0066K03.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15104" stop="15352"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQKPSFSESQNVNQGGENGNSVISSELYLKSSTDHQNLDKNVVLRRLRFHKVRAKLQGLLDTRNYDYYEHKWLEQGDVFCSP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="15104" e_stop="15563"/>
            <exon e_start="17558" e_stop="17576"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.789"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15104" e_stop="15563" e_length="460"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="15564" i_stop="17557" i_length="1994"/>
          </intron>
          <exon e_serial="2" e_score="0.789">
            <gDNA_exon_boundary e_start="17558" e_stop="17576" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15104" stop="15563"/>
              <exon start="17558" stop="17576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273495" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGCAAAAACCTTCGTTCTCTGAGTCTCAGAATGTGAATCAAGGTGGCGAGAATGGAAACTCTGTAATAAGTAGTGAGCTCTATTTGAAATCATCGACTGATCACCAAAATCTTGACAAAAATGTTGTGTTGAGGAGACTTCGTTTTCACAAAGTTCGTGCAAAGTTGCAGGGTCTATTGGACACAAGGAATTATGATTATTACGAGCACAAGTGGTTAGAACAGGGCGACGTTTTCTGCTCCCCCTAGGCCCTCTCTCTCTCTGTTTTTGTCTTCTGTGCCTAAGATTTAAAGTAATGACGAGTTCAATTTTAACATCAAATATATTGCAATCATCATCATATTATTGGTTATAGAGAAATTTCCTATTTCTTTAAGGTTTAGTAACATATATTAGTATAAGTTGAACCATGTAAATATCGCTTCCTTTTCTGTTTAGATAATAATGCACTTTTCTCGT : GAAGAAAAAATTAAAAAGA</gDNA_template>
            <first_frame> E  Q  K  P  S  F  S  E  S  Q  N  V  N  Q  G  G  E  N  G  N  S  V  I  S  S  E  L  Y  L  K  S  S  T  D  H  Q  N  L  D  K  N  V  V  L  R  R  L  R  F  H  K  V  R  A  K  L  Q  G  L  L  D  T  R  N  Y  D  Y  Y  E  H  K  W  L  E  Q  G  D  V  F  C  S  P  *  A  L  S  L  S  V  F  V  F  C  A  *  D  L  K  *  *  R  V  Q  F  *  H  Q  I  Y  C  N  H  H  H  I  I  G  Y  R  E  I  S  Y  F  F  K  V  *  *  H  I  L  V  *  V  E  P  C  K  Y  R  F  L  F  C  L  D  N  N  A  L  F  S   : *  R  K  N  *  K   </first_frame>
            <second_frame>  S  K  N  L  R  S  L  S  L  R  M  *  I  K  V  A  R  M  E  T  L  *  *  V  V  S  S  I  *  N  H  R  L  I  T  K  I  L  T  K  M  L  C  *  G  D  F  V  F  T  K  F  V  Q  S  C  R  V  Y  W  T  Q  G  I  M  I  I  T  S  T  S  G  *  N  R  A  T  F  S  A  P  P  R  P  S  L  S  L  F  L  S  S  V  P  K  I  *  S  N  D  E  F  N  F  N  I  K  Y  I  A  I  I  I  I  L  L  V  I  E  K  F  P  I  S  L  R  F  S  N  I  Y  *  Y  K  L  N  H  V  N  I  A  S  F  S  V  *  I  I  M  H  F  S  R  :  E  E  K  I  K  K  </second_frame>
            <third_frame>   A  K  T  F  V  L  *  V  S  E  C  E  S  R  W  R  E  W  K  L  C  N  K  *  *  A  L  F  E  I  I  D  *  S  P  K  S  *  Q  K  C  C  V  E  E  T  S  F  S  Q  S  S  C  K  V  A  G  S  I  G  H  K  E  L  *  L  L  R  A  Q  V  V  R  T  G  R  R  F  L  L  P  L  G  P  L  S  L  C  F  C  L  L  C  L  R  F  K  V  M  T  S  S  I  L  T  S  N  I  L  Q  S  S  S  Y  Y  W  L  *  R  N  F  L  F  L  *  G  L  V  T  Y  I  S  I  S  *  T  M  *  I  S  L  P  F  L  F  R  *  *  C  T  F  L  V :   K  K  K  L  K  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0066K03.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15104" stop="15352"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQKPSFSESQNVNQGGENGNSVISSELYLKSSTDHQNLDKNVVLRRLRFHKVRAKLQGLLDTRNYDYYEHKWLEQGDVFCSP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="24948" PGL_stop="29546"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28264" e_stop="28341"/>
            <exon e_start="28595" e_stop="29546"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.000" e_score="0.987"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="28264" e_stop="28341" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28342" i_stop="28594" i_length="253"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="28595" e_stop="29546" e_length="952"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28264" stop="28341"/>
              <exon start="28595" stop="29201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28264" stop="28341"/>
              <exon start="28595" stop="28844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28779" stop="29179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28837" stop="29400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28837" stop="29392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28837" stop="29250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28944" stop="29364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28945" stop="29539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28946" stop="29239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29041" stop="29546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214753" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGTTTCAAGATGTAATCCTTCCAGATACCTCTCTGGACGATGTGGTGGAACTACCAGAATTGGTGTGCTCGTTGGAG : GGATTATTGCTGGAGCTGGTTTAATGGCTGCTTTGGCTGTTCTTTGCTACTGCATTCGAAGACGTTCTGCATCTCTCAAGAAAAGAATGAGCGCAAGACGCCTTCTCTCTGAAGCTGCAGGCAGCAACAGTGTTCATGTATTTCAATACAAAGAAATTGAGAGAGCAACAAATAGTTTCTCTGAGAAACAGAGGCTGGGCATAGGGGCTTATGGCACAGTTTATGCTGGAAAGCTCCACAGTGATGAATGGGTTGCAATTAAGAAACTAAGACACCGGGATCCGGATGGTGTTGAACAAGTGATGAATGAGGTTAAGCTTTTGTCTTCTGTAAGTCATCCAAACTTAGTCCGCCTCTTGGGTTGTTGTATAGAAAATGGTGAACAGATTCTTGTTTATGAATTTATGCCCAACGGAACTCTAGCTCAGCATCTACAGAGAGAAAGGAGTTCAGGACTTCCGTGGACAATACGTCTCACTATCGCAACAGAAACTGCTCATGCGATTGCTCACCTTCACTCAGCAATGAATCCACCAATATACCACAGGGATATCAAATCAAGTAACATACTATTGGATTACAACTTCAACTCAAAAGTTGCAGACTTTGGTCTTTCCAGATTTGGCATGACAGATGATTCCCACATTTCTACAGCACCACAAGGTACTCCAGGTTATGTGGATCCTCAGTACCATCAGAATTACCATCTTTCCGATAAGAGTGATGTGTACAGCTTCGGGGTGGTTCTTGTAGAAATCATTACAGCAATGAAAGTGGTTGATTTCTCTAGATCACACAGTGAGATTAATTTGGCTGCACTTGCAATAGACAGAATAGGTAAGGGTCGTGTGGATGAGATCATCGATCCATTTCTAGAGCCACACAGAGATGCATGGACTCTATCATCAGTTCATAGAGTTGCAGAGCTTGCTTTTAGATGCCTTGCATTTCA</gDNA_template>
            <first_frame> Q  F  Q  D  V  I  L  P  D  T  S  L  D  D  V  V  E  L  P  E  L  V  C  S  L  E  :  G  L  L  L  E  L  V  *  W  L  L  W  L  F  F  A  T  A  F  E  D  V  L  H  L  S  R  K  E  *  A  Q  D  A  F  S  L  K  L  Q  A  A  T  V  F  M  Y  F  N  T  K  K  L  R  E  Q  Q  I  V  S  L  R  N  R  G  W  A  *  G  L  M  A  Q  F  M  L  E  S  S  T  V  M  N  G  L  Q  L  R  N  *  D  T  G  I  R  M  V  L  N  K  *  *  M  R  L  S  F  C  L  L  *  V  I  Q  T  *  S  A  S  W  V  V  V  *  K  M  V  N  R  F  L  F  M  N  L  C  P  T  E  L  *  L  S  I  Y  R  E  K  G  V  Q  D  F  R  G  Q  Y  V  S  L  S  Q  Q  K  L  L  M  R  L  L  T  F  T  Q  Q  *  I  H  Q  Y  T  T  G  I  S  N  Q  V  T  Y  Y  W  I  T  T  S  T  Q  K  L  Q  T  L  V  F  P  D  L  A  *  Q  M  I  P  T  F  L  Q  H  H  K  V  L  Q  V  M  W  I  L  S  T  I  R  I  T  I  F  P  I  R  V  M  C  T  A  S  G  W  F  L  *  K  S  L  Q  Q  *  K  W  L  I  S  L  D  H  T  V  R  L  I  W  L  H  L  Q  *  T  E  *  V  R  V  V  W  M  R  S  S  I  H  F  *  S  H  T  E  M  H  G  L  Y  H  Q  F  I  E  L  Q  S  L  L  L  D  A  L  H  F  </first_frame>
            <second_frame>  S  F  K  M  *  S  F  Q  I  P  L  W  T  M  W  W  N  Y  Q  N  W  C  A  R  W  R :   D  Y  C  W  S  W  F  N  G  C  F  G  C  S  L  L  L  H  S  K  T  F  C  I  S  Q  E  K  N  E  R  K  T  P  S  L  *  S  C  R  Q  Q  Q  C  S  C  I  S  I  Q  R  N  *  E  S  N  K  *  F  L  *  E  T  E  A  G  H  R  G  L  W  H  S  L  C  W  K  A  P  Q  *  *  M  G  C  N  *  E  T  K  T  P  G  S  G  W  C  *  T  S  D  E  *  G  *  A  F  V  F  C  K  S  S  K  L  S  P  P  L  G  L  L  Y  R  K  W  *  T  D  S  C  L  *  I  Y  A  Q  R  N  S  S  S  A  S  T  E  R  K  E  F  R  T  S  V  D  N  T  S  H  Y  R  N  R  N  C  S  C  D  C  S  P  S  L  S  N  E  S  T  N  I  P  Q  G  Y  Q  I  K  *  H  T  I  G  L  Q  L  Q  L  K  S  C  R  L  W  S  F  Q  I  W  H  D  R  *  F  P  H  F  Y  S  T  T  R  Y  S  R  L  C  G  S  S  V  P  S  E  L  P  S  F  R  *  E  *  C  V  Q  L  R  G  G  S  C  R  N  H  Y  S  N  E  S  G  *  F  L  *  I  T  Q  *  D  *  F  G  C  T  C  N  R  Q  N  R  *  G  S  C  G  *  D  H  R  S  I  S  R  A  T  Q  R  C  M  D  S  I  I  S  S  *  S  C  R  A  C  F  *  M  P  C  I  S </second_frame>
            <third_frame>   V  S  R  C  N  P  S  R  Y  L  S  G  R  C  G  G  T  T  R  I  G  V  L  V  G   : G  I  I  A  G  A  G  L  M  A  A  L  A  V  L  C  Y  C  I  R  R  R  S  A  S  L  K  K  R  M  S  A  R  R  L  L  S  E  A  A  G  S  N  S  V  H  V  F  Q  Y  K  E  I  E  R  A  T  N  S  F  S  E  K  Q  R  L  G  I  G  A  Y  G  T  V  Y  A  G  K  L  H  S  D  E  W  V  A  I  K  K  L  R  H  R  D  P  D  G  V  E  Q  V  M  N  E  V  K  L  L  S  S  V  S  H  P  N  L  V  R  L  L  G  C  C  I  E  N  G  E  Q  I  L  V  Y  E  F  M  P  N  G  T  L  A  Q  H  L  Q  R  E  R  S  S  G  L  P  W  T  I  R  L  T  I  A  T  E  T  A  H  A  I  A  H  L  H  S  A  M  N  P  P  I  Y  H  R  D  I  K  S  S  N  I  L  L  D  Y  N  F  N  S  K  V  A  D  F  G  L  S  R  F  G  M  T  D  D  S  H  I  S  T  A  P  Q  G  T  P  G  Y  V  D  P  Q  Y  H  Q  N  Y  H  L  S  D  K  S  D  V  Y  S  F  G  V  V  L  V  E  I  I  T  A  M  K  V  V  D  F  S  R  S  H  S  E  I  N  L  A  A  L  A  I  D  R  I  G  K  G  R  V  D  E  I  I  D  P  F  L  E  P  H  R  D  A  W  T  L  S  S  V  H  R  V  A  E  L  A  F  R  C  L  A  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0066K03.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28266" stop="28341"/>
                    <exon start="28595" stop="29544"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1026</number_coding_nucleotides>
                  <number_encoded_amino_acids>342</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSRCNPSRYLSGRCGGTTRIGVLVGGIIAGAGLMAALAVLCYCIRRRSASLKKRMSARRLLSEAAGSNSVHVFQYKEIERATNSFSEKQRLGIGAYGTVYAGKLHSDEWVAIKKLRHRDPDGVEQVMNEVKLLSSVSHPNLVRLLGCCIENGEQILVYEFMPNGTLAQHLQRERSSGLPWTIRLTIATETAHAIAHLHSAMNPPIYHRDIKSSNILLDYNFNSKVADFGLSRFGMTDDSHISTAPQGTPGYVDPQYHQNYHLSDKSDVYSFGVVLVEIITAMKVVDFSRSHSEINLAALAIDRIGKGRVDEIIDPFLEPHRDAWTLSSVHRVAELAFRCLAF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="24948" e_stop="25208"/>
            <exon e_start="28267" e_stop="28341"/>
            <exon e_start="28595" e_stop="29546"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="24948" e_stop="25208" e_length="261"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.953">
            <gDNA_intron_boundary i_start="25209" i_stop="28266" i_length="3058"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28267" e_stop="28341" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.000">
            <gDNA_intron_boundary i_start="28342" i_stop="28594" i_length="253"/>
          </intron>
          <exon e_serial="3" e_score="0.955">
            <gDNA_exon_boundary e_start="28595" e_stop="29546" e_length="952"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24948" stop="25208"/>
              <exon start="28267" stop="28341"/>
              <exon start="28595" stop="28912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28779" stop="29179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28837" stop="29400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28837" stop="29392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28837" stop="29250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28944" stop="29364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28945" stop="29539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28946" stop="29239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29041" stop="29546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214753" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAATTGAAGAATACAGGGTGTGGAACTGTGATTTCGTCCATCTTGATTGGTATGGATAATGATACAATGAAGAGTTCTGCCATGTTTATCGAGTTTCAGACGATGGAATTAGCGTGGGGATTGGAAGGGGATTGTGCATGTCATAACGATGCAAATTGTACCAACGTTTCTCTCCCGGGGAACCGAAAAGGTTTCCGGTGCCGGTGTAAAGATGGATTCGTCGGTGATGGCTTCAGCGACGGTGATGGCTGCCGGAAAG : TTTCAAGATGTAATCCTTCCAGATACCTCTCTGGACGATGTGGTGGAACTACCAGAATTGGTGTGCTCGTTGGAG : GGATTATTGCTGGAGCTGGTTTAATGGCTGCTTTGGCTGTTCTTTGCTACTGCATTCGAAGACGTTCTGCATCTCTCAAGAAAAGAATGAGCGCAAGACGCCTTCTCTCTGAAGCTGCAGGCAGCAACAGTGTTCATGTATTTCAATACAAAGAAATTGAGAGAGCAACAAATAGTTTCTCTGAGAAACAGAGGCTGGGCATAGGGGCTTATGGCACAGTTTATGCTGGAAAGCTCCACAGTGATGAATGGGTTGCAATTAAGAAACTAAGACACCGGGATCCGGATGGTGTTGAACAAGTGATGAATGAGGTTAAGCTTTTGTCTTCTGTAAGTCATCCAAACTTAGTCCGCCTCTTGGGTTGTTGTATAGAAAATGGTGAACAGATTCTTGTTTATGAATTTATGCCCAACGGAACTCTAGCTCAGCATCTACAGAGAGAAAGGAGTTCAGGACTTCCGTGGACAATACGTCTCACTATCGCAACAGAAACTGCTCATGCGATTGCTCACCTTCACTCAGCAATGAATCCACCAATATACCACAGGGATATCAAATCAAGTAACATACTATTGGATTACAACTTCAACTCAAAAGTTGCAGACTTTGGTCTTTCCAGATTTGGCATGACAGATGATTCCCACATTTCTACAGCACCACAAGGTACTCCAGGTTATGTGGATCCTCAGTACCATCAGAATTACCATCTTTCCGATAAGAGTGATGTGTACAGCTTCGGGGTGGTTCTTGTAGAAATCATTACAGCAATGAAAGTGGTTGATTTCTCTAGATCACACAGTGAGATTAATTTGGCTGCACTTGCAATAGACAGAATAGGTAAGGGTCGTGTGGATGAGATCATCGATCCATTTCTAGAGCCACACAGAGATGCATGGACTCTATCATCAGTTCATAGAGTTGCAGAGCTTGCTTTTAGATGCCTTGCATTTCA</gDNA_template>
            <first_frame> R  N  *  R  I  Q  G  V  E  L  *  F  R  P  S  *  L  V  W  I  M  I  Q  *  R  V  L  P  C  L  S  S  F  R  R  W  N  *  R  G  D  W  K  G  I  V  H  V  I  T  M  Q  I  V  P  T  F  L  S  R  G  T  E  K  V  S  G  A  G  V  K  M  D  S  S  V  M  A  S  A  T  V  M  A  A  G  K  :  F  Q  D  V  I  L  P  D  T  S  L  D  D  V  V  E  L  P  E  L  V  C  S  L  E  :  G  L  L  L  E  L  V  *  W  L  L  W  L  F  F  A  T  A  F  E  D  V  L  H  L  S  R  K  E  *  A  Q  D  A  F  S  L  K  L  Q  A  A  T  V  F  M  Y  F  N  T  K  K  L  R  E  Q  Q  I  V  S  L  R  N  R  G  W  A  *  G  L  M  A  Q  F  M  L  E  S  S  T  V  M  N  G  L  Q  L  R  N  *  D  T  G  I  R  M  V  L  N  K  *  *  M  R  L  S  F  C  L  L  *  V  I  Q  T  *  S  A  S  W  V  V  V  *  K  M  V  N  R  F  L  F  M  N  L  C  P  T  E  L  *  L  S  I  Y  R  E  K  G  V  Q  D  F  R  G  Q  Y  V  S  L  S  Q  Q  K  L  L  M  R  L  L  T  F  T  Q  Q  *  I  H  Q  Y  T  T  G  I  S  N  Q  V  T  Y  Y  W  I  T  T  S  T  Q  K  L  Q  T  L  V  F  P  D  L  A  *  Q  M  I  P  T  F  L  Q  H  H  K  V  L  Q  V  M  W  I  L  S  T  I  R  I  T  I  F  P  I  R  V  M  C  T  A  S  G  W  F  L  *  K  S  L  Q  Q  *  K  W  L  I  S  L  D  H  T  V  R  L  I  W  L  H  L  Q  *  T  E  *  V  R  V  V  W  M  R  S  S  I  H  F  *  S  H  T  E  M  H  G  L  Y  H  Q  F  I  E  L  Q  S  L  L  L  D  A  L  H  F  </first_frame>
            <second_frame>  E  I  E  E  Y  R  V  W  N  C  D  F  V  H  L  D  W  Y  G  *  *  Y  N  E  E  F  C  H  V  Y  R  V  S  D  D  G  I  S  V  G  I  G  R  G  L  C  M  S  *  R  C  K  L  Y  Q  R  F  S  P  G  E  P  K  R  F  P  V  P  V  *  R  W  I  R  R  *  W  L  Q  R  R  *  W  L  P  E  S :   F  K  M  *  S  F  Q  I  P  L  W  T  M  W  W  N  Y  Q  N  W  C  A  R  W  R :   D  Y  C  W  S  W  F  N  G  C  F  G  C  S  L  L  L  H  S  K  T  F  C  I  S  Q  E  K  N  E  R  K  T  P  S  L  *  S  C  R  Q  Q  Q  C  S  C  I  S  I  Q  R  N  *  E  S  N  K  *  F  L  *  E  T  E  A  G  H  R  G  L  W  H  S  L  C  W  K  A  P  Q  *  *  M  G  C  N  *  E  T  K  T  P  G  S  G  W  C  *  T  S  D  E  *  G  *  A  F  V  F  C  K  S  S  K  L  S  P  P  L  G  L  L  Y  R  K  W  *  T  D  S  C  L  *  I  Y  A  Q  R  N  S  S  S  A  S  T  E  R  K  E  F  R  T  S  V  D  N  T  S  H  Y  R  N  R  N  C  S  C  D  C  S  P  S  L  S  N  E  S  T  N  I  P  Q  G  Y  Q  I  K  *  H  T  I  G  L  Q  L  Q  L  K  S  C  R  L  W  S  F  Q  I  W  H  D  R  *  F  P  H  F  Y  S  T  T  R  Y  S  R  L  C  G  S  S  V  P  S  E  L  P  S  F  R  *  E  *  C  V  Q  L  R  G  G  S  C  R  N  H  Y  S  N  E  S  G  *  F  L  *  I  T  Q  *  D  *  F  G  C  T  C  N  R  Q  N  R  *  G  S  C  G  *  D  H  R  S  I  S  R  A  T  Q  R  C  M  D  S  I  I  S  S  *  S  C  R  A  C  F  *  M  P  C  I  S </second_frame>
            <third_frame>   K  L  K  N  T  G  C  G  T  V  I  S  S  I  L  I  G  M  D  N  D  T  M  K  S  S  A  M  F  I  E  F  Q  T  M  E  L  A  W  G  L  E  G  D  C  A  C  H  N  D  A  N  C  T  N  V  S  L  P  G  N  R  K  G  F  R  C  R  C  K  D  G  F  V  G  D  G  F  S  D  G  D  G  C  R  K   : V  S  R  C  N  P  S  R  Y  L  S  G  R  C  G  G  T  T  R  I  G  V  L  V  G   : G  I  I  A  G  A  G  L  M  A  A  L  A  V  L  C  Y  C  I  R  R  R  S  A  S  L  K  K  R  M  S  A  R  R  L  L  S  E  A  A  G  S  N  S  V  H  V  F  Q  Y  K  E  I  E  R  A  T  N  S  F  S  E  K  Q  R  L  G  I  G  A  Y  G  T  V  Y  A  G  K  L  H  S  D  E  W  V  A  I  K  K  L  R  H  R  D  P  D  G  V  E  Q  V  M  N  E  V  K  L  L  S  S  V  S  H  P  N  L  V  R  L  L  G  C  C  I  E  N  G  E  Q  I  L  V  Y  E  F  M  P  N  G  T  L  A  Q  H  L  Q  R  E  R  S  S  G  L  P  W  T  I  R  L  T  I  A  T  E  T  A  H  A  I  A  H  L  H  S  A  M  N  P  P  I  Y  H  R  D  I  K  S  S  N  I  L  L  D  Y  N  F  N  S  K  V  A  D  F  G  L  S  R  F  G  M  T  D  D  S  H  I  S  T  A  P  Q  G  T  P  G  Y  V  D  P  Q  Y  H  Q  N  Y  H  L  S  D  K  S  D  V  Y  S  F  G  V  V  L  V  E  I  I  T  A  M  K  V  V  D  F  S  R  S  H  S  E  I  N  L  A  A  L  A  I  D  R  I  G  K  G  R  V  D  E  I  I  D  P  F  L  E  P  H  R  D  A  W  T  L  S  S  V  H  R  V  A  E  L  A  F  R  C  L  A  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0066K03.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24950" stop="25208"/>
                    <exon start="28267" stop="28341"/>
                    <exon start="28595" stop="29544"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1284</number_coding_nucleotides>
                  <number_encoded_amino_acids>428</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLKNTGCGTVISSILIGMDNDTMKSSAMFIEFQTMELAWGLEGDCACHNDANCTNVSLPGNRKGFRCRCKDGFVGDGFSDGDGCRKVSRCNPSRYLSGRCGGTTRIGVLVGGIIAGAGLMAALAVLCYCIRRRSASLKKRMSARRLLSEAAGSNSVHVFQYKEIERATNSFSEKQRLGIGAYGTVYAGKLHSDEWVAIKKLRHRDPDGVEQVMNEVKLLSSVSHPNLVRLLGCCIENGEQILVYEFMPNGTLAQHLQRERSSGLPWTIRLTIATETAHAIAHLHSAMNPPIYHRDIKSSNILLDYNFNSKVADFGLSRFGMTDDSHISTAPQGTPGYVDPQYHQNYHLSDKSDVYSFGVVLVEIITAMKVVDFSRSHSEINLAALAIDRIGKGRVDEIIDPFLEPHRDAWTLSSVHRVAELAFRCLAF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="30861" PGL_stop="29347"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30861" e_stop="29347"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30861" e_stop="29347" e_length="1515"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30861" stop="30173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30858" stop="30157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30855" stop="30161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30852" stop="30513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30827" stop="30276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30817" stop="30151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30785" stop="30173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30784" stop="30152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30776" stop="30238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30764" stop="30157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30715" stop="30010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30715" stop="30026"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30071" stop="29772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30047" stop="29347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378921" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACACACTTCTTTGTGATTGTGGTGTCAAGGAGTGCAGACTTCATTTTGATTGTACAGAGAGCATAGCCATGTCTTCCACAACTACTTCACTTACAGTAAGGACTTACCCACCCCGTTGTGTGCTAAATGCAAACACAAATCCCCCTACCAAACAGGCAGCGGTGGCTCTCCGGGGGCGGAGGCAGTTGATCTCTCTGGTGACGGCGACAACGGTAGTGAAAGCGCTGGAGATGCCGTCCAAGGCTGCGGACATTGGCCTCTTTGGACTGAGAAAGAAGCTTAAGAAAGTAGAAGATGAGGCAGAAGAATTAGTGAAGGAGGGATTCGAGGCGGCAGACAAGGGAATTGCAGCGGCAGAGAAGGGAATTGAAGCGGCGGAGAAAGGATTACTGACGGCTGAGAAGGGGATTGAAGCAGCGGAGGAGAAGATCGAGAGTACAGTAAGTTTCGGTGGGTTGGCGCAAGCTGGAGCGGTGGCCGGAGCTGAATTTGTCGGAGTTTTGATTGCCGGAGCTGTAGTCAATGGTATTTTAGGACCTGAACCTCAAAAATCTTGAAGAGTTTATTGCTTGTCATACAATTTTTCATTGTTGTTATTTGCAAATTAAGTTTGATCTGTGTTTAGCTAAATTCAAAGCATGATCAATTCTATTAGTGTAACAATTAATCCTGTTATATAATATGTATTGATAAATTATTTAACATGTCAGGGTAGTCAAATTCTTGAAGATGATGTATGATGTAGGATTATAGTCGTTGTAAATAACAGGAAACACAACGATTCAAATTCATGGCATTGCAAATACTATTTCACATTCTATAATTCTGCGTATGAAGCAATAAAAATTTTGATACAAAGAGAAGTGCTCTAATAATACTCTTTGATATTCTCAGTAGATTAGAAGGCAGGAAAAGGAGGTGATAGATTACAGGTGATCCCCCTCAGTTTTCTACCTAGAGCGAACTTCTTTTTTCAAGTCATCATCGACCAGAATTACCTAATAATCGATTTGTTGAAGGGGGACTCTCTTCACTTAACCAAGGATCCTGTACAGAAACAGGGGAACTGTCTTTTATTTCCTCCATGATTGCCAGTGAATTCGCTATCTTCTGGGGAACAATCAACCTCCTACTCCCTACTCCTTTCTTAGTTGTTGTACTACGAAAAGATGTCTCACTCATACTACGGGGAGATGAGCAAGAGGAATTCACTGATGAAGTCATGCATACATTGTCCTCCAATGATGCCCAACTGCTGAGCCTGATCTGTTCCAGCTCGTCTGCCACTTCTGTCATTGAAGGCCTCATATCCCTATGAAATGCAAGGCATCTAAAAGCAAGCTCTGCAACTCTATGAACTGATGATAGAGTCCATGCATCTCTGTGTGGCTCTAGAAATGGATCGATGATCTCATCCACACGACCCTTACCTATTCTGTCTATTGCAAGTGCAGCCAAATTAATCTCACTGTGTGATCTAGAGAAATCAACCACTTTCATTGCTGTAATGATTTC</gDNA_template>
            <first_frame> T  H  F  F  V  I  V  V  S  R  S  A  D  F  I  L  I  V  Q  R  A  *  P  C  L  P  Q  L  L  H  L  Q  *  G  L  T  H  P  V  V  C  *  M  Q  T  Q  I  P  L  P  N  R  Q  R  W  L  S  G  G  G  G  S  *  S  L  W  *  R  R  Q  R  *  *  K  R  W  R  C  R  P  R  L  R  T  L  A  S  L  D  *  E  R  S  L  R  K  *  K  M  R  Q  K  N  *  *  R  R  D  S  R  R  Q  T  R  E  L  Q  R  Q  R  R  E  L  K  R  R  R  K  D  Y  *  R  L  R  R  G  L  K  Q  R  R  R  R  S  R  V  Q  *  V  S  V  G  W  R  K  L  E  R  W  P  E  L  N  L  S  E  F  *  L  P  E  L  *  S  M  V  F  *  D  L  N  L  K  N  L  E  E  F  I  A  C  H  T  I  F  H  C  C  Y  L  Q  I  K  F  D  L  C  L  A  K  F  K  A  *  S  I  L  L  V  *  Q  L  I  L  L  Y  N  M  Y  *  *  I  I  *  H  V  R  V  V  K  F  L  K  M  M  Y  D  V  G  L  *  S  L  *  I  T  G  N  T  T  I  Q  I  H  G  I  A  N  T  I  S  H  S  I  I  L  R  M  K  Q  *  K  F  *  Y  K  E  K  C  S  N  N  T  L  *  Y  S  Q  *  I  R  R  Q  E  K  E  V  I  D  Y  R  *  S  P  S  V  F  Y  L  E  R  T  S  F  F  K  S  S  S  T  R  I  T  *  *  S  I  C  *  R  G  T  L  F  T  *  P  R  I  L  Y  R  N  R  G  T  V  F  Y  F  L  H  D  C  Q  *  I  R  Y  L  L  G  N  N  Q  P  P  T  P  Y  S  F  L  S  C  C  T  T  K  R  C  L  T  H  T  T  G  R  *  A  R  G  I  H  *  *  S  H  A  Y  I  V  L  Q  *  C  P  T  A  E  P  D  L  F  Q  L  V  C  H  F  C  H  *  R  P  H  I  P  M  K  C  K  A  S  K  S  K  L  C  N  S  M  N  *  *  *  S  P  C  I  S  V  W  L  *  K  W  I  D  D  L  I  H  T  T  L  T  Y  S  V  Y  C  K  C  S  Q  I  N  L  T  V  *  S  R  E  I  N  H  F  H  C  C  N  D  F </first_frame>
            <second_frame>  H  T  S  L  *  L  W  C  Q  G  V  Q  T  S  F  *  L  Y  R  E  H  S  H  V  F  H  N  Y  F  T  Y  S  K  D  L  P  T  P  L  C  A  K  C  K  H  K  S  P  Y  Q  T  G  S  G  G  S  P  G  A  E  A  V  D  L  S  G  D  G  D  N  G  S  E  S  A  G  D  A  V  Q  G  C  G  H  W  P  L  W  T  E  K  E  A  *  E  S  R  R  *  G  R  R  I  S  E  G  G  I  R  G  G  R  Q  G  N  C  S  G  R  E  G  N  *  S  G  G  E  R  I  T  D  G  *  E  G  D  *  S  S  G  G  E  D  R  E  Y  S  K  F  R  W  V  G  A  S  W  S  G  G  R  S  *  I  C  R  S  F  D  C  R  S  C  S  Q  W  Y  F  R  T  *  T  S  K  I  L  K  S  L  L  L  V  I  Q  F  F  I  V  V  I  C  K  L  S  L  I  C  V  *  L  N  S  K  H  D  Q  F  Y  *  C  N  N  *  S  C  Y  I  I  C  I  D  K  L  F  N  M  S  G  *  S  N  S  *  R  *  C  M  M  *  D  Y  S  R  C  K  *  Q  E  T  Q  R  F  K  F  M  A  L  Q  I  L  F  H  I  L  *  F  C  V  *  S  N  K  N  F  D  T  K  R  S  A  L  I  I  L  F  D  I  L  S  R  L  E  G  R  K  R  R  *  *  I  T  G  D  P  P  Q  F  S  T  *  S  E  L  L  F  S  S  H  H  R  P  E  L  P  N  N  R  F  V  E  G  G  L  S  S  L  N  Q  G  S  C  T  E  T  G  E  L  S  F  I  S  S  M  I  A  S  E  F  A  I  F  W  G  T  I  N  L  L  L  P  T  P  F  L  V  V  V  L  R  K  D  V  S  L  I  L  R  G  D  E  Q  E  E  F  T  D  E  V  M  H  T  L  S  S  N  D  A  Q  L  L  S  L  I  C  S  S  S  S  A  T  S  V  I  E  G  L  I  S  L  *  N  A  R  H  L  K  A  S  S  A  T  L  *  T  D  D  R  V  H  A  S  L  C  G  S  R  N  G  S  M  I  S  S  T  R  P  L  P  I  L  S  I  A  S  A  A  K  L  I  S  L  C  D  L  E  K  S  T  T  F  I  A  V  M  I   </second_frame>
            <third_frame>   T  L  L  C  D  C  G  V  K  E  C  R  L  H  F  D  C  T  E  S  I  A  M  S  S  T  T  T  S  L  T  V  R  T  Y  P  P  R  C  V  L  N  A  N  T  N  P  P  T  K  Q  A  A  V  A  L  R  G  R  R  Q  L  I  S  L  V  T  A  T  T  V  V  K  A  L  E  M  P  S  K  A  A  D  I  G  L  F  G  L  R  K  K  L  K  K  V  E  D  E  A  E  E  L  V  K  E  G  F  E  A  A  D  K  G  I  A  A  A  E  K  G  I  E  A  A  E  K  G  L  L  T  A  E  K  G  I  E  A  A  E  E  K  I  E  S  T  V  S  F  G  G  L  A  Q  A  G  A  V  A  G  A  E  F  V  G  V  L  I  A  G  A  V  V  N  G  I  L  G  P  E  P  Q  K  S  *  R  V  Y  C  L  S  Y  N  F  S  L  L  L  F  A  N  *  V  *  S  V  F  S  *  I  Q  S  M  I  N  S  I  S  V  T  I  N  P  V  I  *  Y  V  L  I  N  Y  L  T  C  Q  G  S  Q  I  L  E  D  D  V  *  C  R  I  I  V  V  V  N  N  R  K  H  N  D  S  N  S  W  H  C  K  Y  Y  F  T  F  Y  N  S  A  Y  E  A  I  K  I  L  I  Q  R  E  V  L  *  *  Y  S  L  I  F  S  V  D  *  K  A  G  K  G  G  D  R  L  Q  V  I  P  L  S  F  L  P  R  A  N  F  F  F  Q  V  I  I  D  Q  N  Y  L  I  I  D  L  L  K  G  D  S  L  H  L  T  K  D  P  V  Q  K  Q  G  N  C  L  L  F  P  P  *  L  P  V  N  S  L  S  S  G  E  Q  S  T  S  Y  S  L  L  L  S  *  L  L  Y  Y  E  K  M  S  H  S  Y  Y  G  E  M  S  K  R  N  S  L  M  K  S  C  I  H  C  P  P  M  M  P  N  C  *  A  *  S  V  P  A  R  L  P  L  L  S  L  K  A  S  Y  P  Y  E  M  Q  G  I  *  K  Q  A  L  Q  L  Y  E  L  M  I  E  S  M  H  L  C  V  A  L  E  M  D  R  *  S  H  P  H  D  P  Y  L  F  C  L  L  Q  V  Q  P  N  *  S  H  C  V  I  *  R  N  Q  P  L  S  L  L  *  *  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0066K03.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30859" stop="30305"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLLCDCGVKECRLHFDCTESIAMSSTTTSLTVRTYPPRCVLNANTNPPTKQAAVALRGRRQLISLVTATTVVKALEMPSKAADIGLFGLRKKLKKVEDEAEELVKEGFEAADKGIAAAEKGIEAAEKGLLTAEKGIEAAEEKIESTVSFGGLAQAGAVAGAEFVGVLIAGAVVNGILGPEPQKS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0066K03.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29903" stop="29544"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SELLFSSHHRPELPNNRFVEGGLSSLNQGSCTETGELSFISSMIASEFAIFWGTINLLLPTPFLVVVLRKDVSLILRGDEQEEFTDEVMHTLSSNDAQLLSLICSSSSATSVIEGLISL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="30153" PGL_stop="30818"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30153" e_stop="30818"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="30153" e_stop="30818" e_length="666"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30153" stop="30818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372866" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGACATGTTAAATAATTTATCAATACATATTATATAACAGGATTAATTGTTACACTAATAGAATTGATCATGCTTTGAATTTAGCTAAACACAGATCAAACTTAATTTGCAAATAACAACAATGAAAAATTGTATGACAAGCAATAAACTCTTCAAGATTTTTGAGGTTCAGGTCCTAAAATACCATTGACTACAGCTCCGGCAATCAAAACTCCGACAAATTCAGCTCCGGCCACCGCTCCAGCTTGCGCCAACCCACCGAAACTTACTGTACTCTCGATCTTCTCCTCCGCTGCTTCAATCCCCTTCTCAGCCGTCAGTAATCCTTTCTCCGCCGCTTCAATTCCCTTCTCTGCCGCTGCAATTCCCTTGTCTGCCGCCTCGAATCCCTCCTTCACTAATTCTTCTGCCTCATCTTCTACTTTCTTAAGCTTCTTTCTCAGTCCAAAGAGGCCAATGTCCGCAGCCTTGGACGGCATCTCCAGCGCTTTCACTACCGTTGTCGCCGTCACCAGAGAGATCAACTGCCTCCGCCCCCGGAGAGCCACCGCTGCCTGTTTGGTAGGGGGATTTGTGTTTGCATTTAGCACACAACGGGGTGGGTAAGTCCTTACTGTAAGTGAAGTAGTTGTGGAAGACATGGCTATGCTCTCTGTACAATCAAAA</gDNA_template>
            <first_frame> *  H  V  K  *  F  I  N  T  Y  Y  I  T  G  L  I  V  T  L  I  E  L  I  M  L  *  I  *  L  N  T  D  Q  T  *  F  A  N  N  N  N  E  K  L  Y  D  K  Q  *  T  L  Q  D  F  *  G  S  G  P  K  I  P  L  T  T  A  P  A  I  K  T  P  T  N  S  A  P  A  T  A  P  A  C  A  N  P  P  K  L  T  V  L  S  I  F  S  S  A  A  S  I  P  F  S  A  V  S  N  P  F  S  A  A  S  I  P  F  S  A  A  A  I  P  L  S  A  A  S  N  P  S  F  T  N  S  S  A  S  S  S  T  F  L  S  F  F  L  S  P  K  R  P  M  S  A  A  L  D  G  I  S  S  A  F  T  T  V  V  A  V  T  R  E  I  N  C  L  R  P  R  R  A  T  A  A  C  L  V  G  G  F  V  F  A  F  S  T  Q  R  G  G  *  V  L  T  V  S  E  V  V  V  E  D  M  A  M  L  S  V  Q  S  K </first_frame>
            <second_frame>  D  M  L  N  N  L  S  I  H  I  I  *  Q  D  *  L  L  H  *  *  N  *  S  C  F  E  F  S  *  T  Q  I  K  L  N  L  Q  I  T  T  M  K  N  C  M  T  S  N  K  L  F  K  I  F  E  V  Q  V  L  K  Y  H  *  L  Q  L  R  Q  S  K  L  R  Q  I  Q  L  R  P  P  L  Q  L  A  P  T  H  R  N  L  L  Y  S  R  S  S  P  P  L  L  Q  S  P  S  Q  P  S  V  I  L  S  P  P  L  Q  F  P  S  L  P  L  Q  F  P  C  L  P  P  R  I  P  P  S  L  I  L  L  P  H  L  L  L  S  *  A  S  F  S  V  Q  R  G  Q  C  P  Q  P  W  T  A  S  P  A  L  S  L  P  L  S  P  S  P  E  R  S  T  A  S  A  P  G  E  P  P  L  P  V  W  *  G  D  L  C  L  H  L  A  H  N  G  V  G  K  S  L  L  *  V  K  *  L  W  K  T  W  L  C  S  L  Y  N  Q   </second_frame>
            <third_frame>   T  C  *  I  I  Y  Q  Y  I  L  Y  N  R  I  N  C  Y  T  N  R  I  D  H  A  L  N  L  A  K  H  R  S  N  L  I  C  K  *  Q  Q  *  K  I  V  *  Q  A  I  N  S  S  R  F  L  R  F  R  S  *  N  T  I  D  Y  S  S  G  N  Q  N  S  D  K  F  S  S  G  H  R  S  S  L  R  Q  P  T  E  T  Y  C  T  L  D  L  L  L  R  C  F  N  P  L  L  S  R  Q  *  S  F  L  R  R  F  N  S  L  L  C  R  C  N  S  L  V  C  R  L  E  S  L  L  H  *  F  F  C  L  I  F  Y  F  L  K  L  L  S  Q  S  K  E  A  N  V  R  S  L  G  R  H  L  Q  R  F  H  Y  R  C  R  R  H  Q  R  D  Q  L  P  P  P  P  E  S  H  R  C  L  F  G  R  G  I  C  V  C  I  *  H  T  T  G  W  V  S  P  Y  C  K  *  S  S  C  G  R  H  G  Y  A  L  C  T  I  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0066K03.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30318" stop="30758"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSGPKIPLTTAPAIKTPTNSAPATAPACANPPKLTVLSIFSSAASIPFSAVSNPFSAASIPFSAAAIPLSAASNPSFTNSSASSSTFLSFFLSPKRPMSAALDGISSAFTTVVAVTREINCLRPRRATAACLVGGFVFAFSTQRGG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="33207" PGL_stop="43485"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33207" e_stop="33552"/>
            <exon e_start="34429" e_stop="34676"/>
            <exon e_start="36287" e_stop="36481"/>
            <exon e_start="37791" e_stop="37881"/>
            <exon e_start="38034" e_stop="38304"/>
            <exon e_start="38385" e_stop="38898"/>
            <exon e_start="39495" e_stop="39514"/>
            <exon e_start="40607" e_stop="40636"/>
            <exon e_start="40824" e_stop="40851"/>
            <exon e_start="42392" e_stop="42444"/>
            <exon e_start="43404" e_stop="43485"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.760" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.245" e_score="1.000"/>
          <exon-intron don_prob="0.908" acc_prob="0.991" e_score="0.988"/>
          <exon-intron don_prob="0.990" acc_prob="0.835" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.608" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.650"/>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="0.700"/>
          <exon-intron don_prob="0.413" acc_prob="0.831" e_score="0.571"/>
          <exon-intron don_prob="0.163" acc_prob="0.539" e_score="0.604"/>
          <exon-only e_score="0.549"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33207" e_stop="33552" e_length="346"/>
          </exon>
          <intron i_serial="1" don_prob="0.760" acc_prob="0.958">
            <gDNA_intron_boundary i_start="33553" i_stop="34428" i_length="876"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34429" e_stop="34676" e_length="248"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.245">
            <gDNA_intron_boundary i_start="34677" i_stop="36286" i_length="1610"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="36287" e_stop="36481" e_length="195"/>
          </exon>
          <intron i_serial="3" don_prob="0.908" acc_prob="0.991">
            <gDNA_intron_boundary i_start="36482" i_stop="37790" i_length="1309"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="37791" e_stop="37881" e_length="91"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.835">
            <gDNA_intron_boundary i_start="37882" i_stop="38033" i_length="152"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="38034" e_stop="38304" e_length="271"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="38305" i_stop="38384" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="38385" e_stop="38898" e_length="514"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.608">
            <gDNA_intron_boundary i_start="38899" i_stop="39494" i_length="596"/>
          </intron>
          <exon e_serial="7" e_score="0.650">
            <gDNA_exon_boundary e_start="39495" e_stop="39514" e_length="20"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="39515" i_stop="40606" i_length="1092"/>
          </intron>
          <exon e_serial="8" e_score="0.700">
            <gDNA_exon_boundary e_start="40607" e_stop="40636" e_length="30"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="40637" i_stop="40823" i_length="187"/>
          </intron>
          <exon e_serial="9" e_score="0.571">
            <gDNA_exon_boundary e_start="40824" e_stop="40851" e_length="28"/>
          </exon>
          <intron i_serial="9" don_prob="0.413" acc_prob="0.831">
            <gDNA_intron_boundary i_start="40852" i_stop="42391" i_length="1540"/>
          </intron>
          <exon e_serial="10" e_score="0.604">
            <gDNA_exon_boundary e_start="42392" e_stop="42444" e_length="53"/>
          </exon>
          <intron i_serial="10" don_prob="0.163" acc_prob="0.539">
            <gDNA_intron_boundary i_start="42445" i_stop="43403" i_length="959"/>
          </intron>
          <exon e_serial="11" e_score="0.549">
            <gDNA_exon_boundary e_start="43404" e_stop="43485" e_length="82"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33207" stop="33552"/>
              <exon start="34429" stop="34650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33219" stop="33552"/>
              <exon start="34429" stop="34676"/>
              <exon start="36287" stop="36457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33220" stop="33552"/>
              <exon start="34429" stop="34460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33227" stop="33552"/>
              <exon start="34429" stop="34507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33379" stop="33552"/>
              <exon start="34429" stop="34495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36452" stop="36481"/>
              <exon start="37791" stop="37881"/>
              <exon start="38034" stop="38304"/>
              <exon start="38385" stop="38698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36455" stop="36481"/>
              <exon start="37791" stop="37881"/>
              <exon start="38034" stop="38159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38426" stop="38898"/>
              <exon start="39495" stop="39511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259146" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38437" stop="38898"/>
              <exon start="39495" stop="39514"/>
              <exon start="40607" stop="40636"/>
              <exon start="40824" stop="40851"/>
              <exon start="42392" stop="42444"/>
              <exon start="43404" stop="43485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38437" stop="38898"/>
              <exon start="39495" stop="39511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255954" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCAAAAGAGAGGGAAAATCAAGGGCTTATAAAATTTCCGCTTAGAGTAGCTATTTCTAATCAAAGAGACGATGGCTGAGGAAGCAGTAATTTCAGTAACAAGCCCTACGGCGGAGCAAAACCAGAACTCGGTGAACGCCACCATCGAATCTGGTGTTCAGGGAGGCACAGAATCAACTTGCAACAACAATAATAATAATGCGGAGAGTTCTGCGGTTACTTCTGATGTTAACCGTGAAAAATCTCTGGAGTACGCGGATGAGTTAGTGGTAAAAGGCTCCAAGGCATCTGAAGATGGAGATTATGGAGAAGCCGTAGAATGCTTTAGCCGTGCCCTGGAAATTCG : GGTCGCACATTTTGGTGAACTTGCTCCTGAATGTATCAATGCATATTATAAATATGGGTGTGCTTTGCTGTACAAAGCTCAGGATGAGGCTGATCCTTTGGTTTCTTTGCCAAAAAAGGACAGCGGGTCTCAACAAGATTCTAATAGAGACGGCTCTGTTAAAAGTGTTGTTAGTTGTGAGTCTTCTATTTCAAGCACTGCTGAACCTGGTGGAAGTTCGAATGGAAAGGAAAAAGTAGAAGATGATG : AGGAAAACGAAGATGAAGGAGATGAAGAAGAAAGTGATGACGAGGACTTGGCTGAAGGTGATGAGGATGAAACTGACCTGGATTTAGCCTGGAAACTGTTAGATGTTGCAAGGGCAATTGCTGAAAAGCACGCTGGTGACACAATGGAAAAAGTGGATGTATTATCAGCTTTGGCTGAGGTAGCCTTGGAAAGAG : AGGATATTGAAACTTCCCTTAGTGATTACCTGAAGGCATTATCCATTTTGGAACGCTTGGTTGAACCTGACAGTCGCCATATTGCTGCGCT : CAACTTTAGGATATGCTTATGCCTGGAAATTGGTTCTAAGCATCAGGAAGCCATACCATACTGCCAAAAAGCTATTTTAACTTGCAAGTCGCGGCTGCAGAGACTCACTGAGGAAATAAAGCTTTTGTCAGAATCAACAGAAAGATTAGCTACTACCGATGTAGATCAGATTGCGAGACAGTCTTCCAGTATATCACAGTCTGACTCTGTATCTGCTAAAGAAGCTGAAGTTGAAACGCTCACTGAACTTTCTGCAGAATTGGAGAAGAAG : CTTGAAGATTTGCAGCAGTGTATGTCAAATCCATCATCTATCCTCTCCGATATTTTGGGAATGGTGTCTGCGAAAGCAAGAAGTCTAGAGAATGCTGATGCTTCTGTAGCTGTGAACTCCTCACAGATGGGTGTTGGTACCAGTGGTAGCGGAAGTTTTGACTCTCCAACTGTTTCCACTGCCCACACAAATGGTGCAGCTGGAATAACCCATCTTGGAGTAGTTGGAAGAGGAGTCAAGAGGGTGCATCTAAACACAACCACAGAATCTAGTCCAGCGAAAAAACCTGCATCTGAGCAGCCGTCAGATAATGGAGATGGCACTGCCTCTTAAAGCATGTATTGTTGGTGCTTCAATTAAGTTACGGTTAACATTTCAATTTAGCTTATTGATAACATTGGTGGATTACCTTAGTTTGTTGCATTCTCTGTTGGTTAGCTGGGAAGTGTGTTGCCACAGATCGCATCAGTTTATTTCCTTAAATTAATTACCTTGTATGCATGTTGACTATTCA : GGAAAATAAAAGACAATTCA : ATCCTTAGATTCGAAAAACCATAATATTAA : GTACTCAACGAGGCGATGATGCCGTTGG : TAAATGTGGGCTTTATATTGAGTAAAATTCAAATTGTCATGGATCCTTAAAAG : ATTCACTGTTTTACAGGTTTTGTACTACAGGATTACCCAGTGATATCATCATTGAAGTTGAAGATATGACCTTCCATCTTCA</gDNA_template>
            <first_frame> F  K  R  E  G  K  S  R  A  Y  K  I  S  A  *  S  S  Y  F  *  S  K  R  R  W  L  R  K  Q  *  F  Q  *  Q  A  L  R  R  S  K  T  R  T  R  *  T  P  P  S  N  L  V  F  R  E  A  Q  N  Q  L  A  T  T  I  I  I  M  R  R  V  L  R  L  L  L  M  L  T  V  K  N  L  W  S  T  R  M  S  *  W  *  K  A  P  R  H  L  K  M  E  I  M  E  K  P  *  N  A  L  A  V  P  W  K  F   : G  S  H  I  L  V  N  L  L  L  N  V  S  M  H  I  I  N  M  G  V  L  C  C  T  K  L  R  M  R  L  I  L  W  F  L  C  Q  K  R  T  A  G  L  N  K  I  L  I  E  T  A  L  L  K  V  L  L  V  V  S  L  L  F  Q  A  L  L  N  L  V  E  V  R  M  E  R  K  K  *  K  M  M  :  R  K  T  K  M  K  E  M  K  K  K  V  M  T  R  T  W  L  K  V  M  R  M  K  L  T  W  I  *  P  G  N  C  *  M  L  Q  G  Q  L  L  K  S  T  L  V  T  Q  W  K  K  W  M  Y  Y  Q  L  W  L  R  *  P  W  K  E  :  R  I  L  K  L  P  L  V  I  T  *  R  H  Y  P  F  W  N  A  W  L  N  L  T  V  A  I  L  L  R   : S  T  L  G  Y  A  Y  A  W  K  L  V  L  S  I  R  K  P  Y  H  T  A  K  K  L  F  *  L  A  S  R  G  C  R  D  S  L  R  K  *  S  F  C  Q  N  Q  Q  K  D  *  L  L  P  M  *  I  R  L  R  D  S  L  P  V  Y  H  S  L  T  L  Y  L  L  K  K  L  K  L  K  R  S  L  N  F  L  Q  N  W  R  R  S :   L  K  I  C  S  S  V  C  Q  I  H  H  L  S  S  P  I  F  W  E  W  C  L  R  K  Q  E  V  *  R  M  L  M  L  L  *  L  *  T  P  H  R  W  V  L  V  P  V  V  A  E  V  L  T  L  Q  L  F  P  L  P  T  Q  M  V  Q  L  E  *  P  I  L  E  *  L  E  E  E  S  R  G  C  I  *  T  Q  P  Q  N  L  V  Q  R  K  N  L  H  L  S  S  R  Q  I  M  E  M  A  L  P  L  K  A  C  I  V  G  A  S  I  K  L  R  L  T  F  Q  F  S  L  L  I  T  L  V  D  Y  L  S  L  L  H  S  L  L  V  S  W  E  V  C  C  H  R  S  H  Q  F  I  S  L  N  *  L  P  C  M  H  V  D  Y  S  :  G  K  *  K  T  I  Q :   S  L  D  S  K  N  H  N  I  K :   Y  S  T  R  R  *  C  R  W  :  *  M  W  A  L  Y  *  V  K  F  K  L  S  W  I  L  K  R :   F  T  V  L  Q  V  L  Y  Y  R  I  T  Q  *  Y  H  H  *  S  *  R  Y  D  L  P  S  S </first_frame>
            <second_frame>  S  K  E  R  E  N  Q  G  L  I  K  F  P  L  R  V  A  I  S  N  Q  R  D  D  G  *  G  S  S  N  F  S  N  K  P  Y  G  G  A  K  P  E  L  G  E  R  H  H  R  I  W  C  S  G  R  H  R  I  N  L  Q  Q  Q  *  *  *  C  G  E  F  C  G  Y  F  *  C  *  P  *  K  I  S  G  V  R  G  *  V  S  G  K  R  L  Q  G  I  *  R  W  R  L  W  R  S  R  R  M  L  *  P  C  P  G  N  S  :  G  R  T  F  W  *  T  C  S  *  M  Y  Q  C  I  L  *  I  W  V  C  F  A  V  Q  S  S  G  *  G  *  S  F  G  F  F  A  K  K  G  Q  R  V  S  T  R  F  *  *  R  R  L  C  *  K  C  C  *  L  *  V  F  Y  F  K  H  C  *  T  W  W  K  F  E  W  K  G  K  S  R  R  *  * :   G  K  R  R  *  R  R  *  R  R  K  *  *  R  G  L  G  *  R  *  *  G  *  N  *  P  G  F  S  L  E  T  V  R  C  C  K  G  N  C  *  K  A  R  W  *  H  N  G  K  S  G  C  I  I  S  F  G  *  G  S  L  G  K  R :   G  Y  *  N  F  P  *  *  L  P  E  G  I  I  H  F  G  T  L  G  *  T  *  Q  S  P  Y  C  C  A  :  Q  L  *  D  M  L  M  P  G  N  W  F  *  A  S  G  S  H  T  I  L  P  K  S  Y  F  N  L  Q  V  A  A  A  E  T  H  *  G  N  K  A  F  V  R  I  N  R  K  I  S  Y  Y  R  C  R  S  D  C  E  T  V  F  Q  Y  I  T  V  *  L  C  I  C  *  R  S  *  S  *  N  A  H  *  T  F  C  R  I  G  E  E   : A  *  R  F  A  A  V  Y  V  K  S  I  I  Y  P  L  R  Y  F  G  N  G  V  C  E  S  K  K  S  R  E  C  *  C  F  C  S  C  E  L  L  T  D  G  C  W  Y  Q  W  *  R  K  F  *  L  S  N  C  F  H  C  P  H  K  W  C  S  W  N  N  P  S  W  S  S  W  K  R  S  Q  E  G  A  S  K  H  N  H  R  I  *  S  S  E  K  T  C  I  *  A  A  V  R  *  W  R  W  H  C  L  L  K  H  V  L  L  V  L  Q  L  S  Y  G  *  H  F  N  L  A  Y  *  *  H  W  W  I  T  L  V  C  C  I  L  C  W  L  A  G  K  C  V  A  T  D  R  I  S  L  F  P  *  I  N  Y  L  V  C  M  L  T  I  Q :   E  N  K  R  Q  F   : N  P  *  I  R  K  T  I  I  L   : S  T  Q  R  G  D  D  A  V  G :   K  C  G  L  Y  I  E  *  N  S  N  C  H  G  S  L  K   : D  S  L  F  Y  R  F  C  T  T  G  L  P  S  D  I  I  I  E  V  E  D  M  T  F  H  L   </second_frame>
            <third_frame>   Q  K  R  G  K  I  K  G  L  *  N  F  R  L  E  *  L  F  L  I  K  E  T  M  A  E  E  A  V  I  S  V  T  S  P  T  A  E  Q  N  Q  N  S  V  N  A  T  I  E  S  G  V  Q  G  G  T  E  S  T  C  N  N  N  N  N  N  A  E  S  S  A  V  T  S  D  V  N  R  E  K  S  L  E  Y  A  D  E  L  V  V  K  G  S  K  A  S  E  D  G  D  Y  G  E  A  V  E  C  F  S  R  A  L  E  I  R :   V  A  H  F  G  E  L  A  P  E  C  I  N  A  Y  Y  K  Y  G  C  A  L  L  Y  K  A  Q  D  E  A  D  P  L  V  S  L  P  K  K  D  S  G  S  Q  Q  D  S  N  R  D  G  S  V  K  S  V  V  S  C  E  S  S  I  S  S  T  A  E  P  G  G  S  S  N  G  K  E  K  V  E  D  D   : E  E  N  E  D  E  G  D  E  E  E  S  D  D  E  D  L  A  E  G  D  E  D  E  T  D  L  D  L  A  W  K  L  L  D  V  A  R  A  I  A  E  K  H  A  G  D  T  M  E  K  V  D  V  L  S  A  L  A  E  V  A  L  E  R   : E  D  I  E  T  S  L  S  D  Y  L  K  A  L  S  I  L  E  R  L  V  E  P  D  S  R  H  I  A  A  L :   N  F  R  I  C  L  C  L  E  I  G  S  K  H  Q  E  A  I  P  Y  C  Q  K  A  I  L  T  C  K  S  R  L  Q  R  L  T  E  E  I  K  L  L  S  E  S  T  E  R  L  A  T  T  D  V  D  Q  I  A  R  Q  S  S  S  I  S  Q  S  D  S  V  S  A  K  E  A  E  V  E  T  L  T  E  L  S  A  E  L  E  K  K  :  L  E  D  L  Q  Q  C  M  S  N  P  S  S  I  L  S  D  I  L  G  M  V  S  A  K  A  R  S  L  E  N  A  D  A  S  V  A  V  N  S  S  Q  M  G  V  G  T  S  G  S  G  S  F  D  S  P  T  V  S  T  A  H  T  N  G  A  A  G  I  T  H  L  G  V  V  G  R  G  V  K  R  V  H  L  N  T  T  T  E  S  S  P  A  K  K  P  A  S  E  Q  P  S  D  N  G  D  G  T  A  S  *  S  M  Y  C  W  C  F  N  *  V  T  V  N  I  S  I  *  L  I  D  N  I  G  G  L  P  *  F  V  A  F  S  V  G  *  L  G  S  V  L  P  Q  I  A  S  V  Y  F  L  K  L  I  T  L  Y  A  C  *  L  F   : R  K  I  K  D  N  S  :  I  L  R  F  E  K  P  *  Y  *  :  V  L  N  E  A  M  M  P  L   : V  N  V  G  F  I  L  S  K  I  Q  I  V  M  D  P  *  K  :  I  H  C  F  T  G  F  V  L  Q  D  Y  P  V  I  S  S  L  K  L  K  I  *  P  S  I  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0066K03.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33257" stop="33552"/>
                    <exon start="34429" stop="34676"/>
                    <exon start="36287" stop="36481"/>
                    <exon start="37791" stop="37881"/>
                    <exon start="38034" stop="38304"/>
                    <exon start="38385" stop="38717"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1431</number_coding_nucleotides>
                  <number_encoded_amino_acids>477</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFLIKETMAEEAVISVTSPTAEQNQNSVNATIESGVQGGTESTCNNNNNNAESSAVTSDVNREKSLEYADELVVKGSKASEDGDYGEAVECFSRALEIRVAHFGELAPECINAYYKYGCALLYKAQDEADPLVSLPKKDSGSQQDSNRDGSVKSVVSCESSISSTAEPGGSSNGKEKVEDDEENEDEGDEEESDDEDLAEGDEDETDLDLAWKLLDVARAIAEKHAGDTMEKVDVLSALAEVALEREDIETSLSDYLKALSILERLVEPDSRHIAALNFRICLCLEIGSKHQEAIPYCQKAILTCKSRLQRLTEEIKLLSESTERLATTDVDQIARQSSSISQSDSVSAKEAEVETLTELSAELEKKLEDLQQCMSNPSSILSDILGMVSAKARSLENADASVAVNSSQMGVGTSGSGSFDSPTVSTAHTNGAAGITHLGVVGRGVKRVHLNTTTESSPAKKPASEQPSDNGDGTAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="33207" e_stop="33552"/>
            <exon e_start="34429" e_stop="34676"/>
            <exon e_start="36287" e_stop="36481"/>
            <exon e_start="37791" e_stop="37881"/>
            <exon e_start="38034" e_stop="38304"/>
            <exon e_start="38385" e_stop="38899"/>
            <exon e_start="39495" e_stop="39514"/>
            <exon e_start="40512" e_stop="40566"/>
            <exon e_start="40788" e_stop="40840"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.760" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.245" e_score="1.000"/>
          <exon-intron don_prob="0.908" acc_prob="0.991" e_score="0.988"/>
          <exon-intron don_prob="0.990" acc_prob="0.835" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.608" e_score="0.998"/>
          <exon-intron don_prob="0.000" acc_prob="0.415" e_score="0.650"/>
          <exon-intron don_prob="0.695" acc_prob="0.000" e_score="0.509"/>
          <exon-only e_score="0.566"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33207" e_stop="33552" e_length="346"/>
          </exon>
          <intron i_serial="1" don_prob="0.760" acc_prob="0.958">
            <gDNA_intron_boundary i_start="33553" i_stop="34428" i_length="876"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34429" e_stop="34676" e_length="248"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.245">
            <gDNA_intron_boundary i_start="34677" i_stop="36286" i_length="1610"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="36287" e_stop="36481" e_length="195"/>
          </exon>
          <intron i_serial="3" don_prob="0.908" acc_prob="0.991">
            <gDNA_intron_boundary i_start="36482" i_stop="37790" i_length="1309"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="37791" e_stop="37881" e_length="91"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.835">
            <gDNA_intron_boundary i_start="37882" i_stop="38033" i_length="152"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="38034" e_stop="38304" e_length="271"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="38305" i_stop="38384" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="0.998">
            <gDNA_exon_boundary e_start="38385" e_stop="38899" e_length="515"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.608">
            <gDNA_intron_boundary i_start="38900" i_stop="39494" i_length="595"/>
          </intron>
          <exon e_serial="7" e_score="0.650">
            <gDNA_exon_boundary e_start="39495" e_stop="39514" e_length="20"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.415">
            <gDNA_intron_boundary i_start="39515" i_stop="40511" i_length="997"/>
          </intron>
          <exon e_serial="8" e_score="0.509">
            <gDNA_exon_boundary e_start="40512" e_stop="40566" e_length="55"/>
          </exon>
          <intron i_serial="8" don_prob="0.695" acc_prob="0.000">
            <gDNA_intron_boundary i_start="40567" i_stop="40787" i_length="221"/>
          </intron>
          <exon e_serial="9" e_score="0.566">
            <gDNA_exon_boundary e_start="40788" e_stop="40840" e_length="53"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33207" stop="33552"/>
              <exon start="34429" stop="34650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33219" stop="33552"/>
              <exon start="34429" stop="34676"/>
              <exon start="36287" stop="36457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33220" stop="33552"/>
              <exon start="34429" stop="34460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33227" stop="33552"/>
              <exon start="34429" stop="34507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33379" stop="33552"/>
              <exon start="34429" stop="34495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36452" stop="36481"/>
              <exon start="37791" stop="37881"/>
              <exon start="38034" stop="38304"/>
              <exon start="38385" stop="38698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36455" stop="36481"/>
              <exon start="37791" stop="37881"/>
              <exon start="38034" stop="38159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38437" stop="38899"/>
              <exon start="39495" stop="39514"/>
              <exon start="40512" stop="40566"/>
              <exon start="40788" stop="40840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255656" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCAAAAGAGAGGGAAAATCAAGGGCTTATAAAATTTCCGCTTAGAGTAGCTATTTCTAATCAAAGAGACGATGGCTGAGGAAGCAGTAATTTCAGTAACAAGCCCTACGGCGGAGCAAAACCAGAACTCGGTGAACGCCACCATCGAATCTGGTGTTCAGGGAGGCACAGAATCAACTTGCAACAACAATAATAATAATGCGGAGAGTTCTGCGGTTACTTCTGATGTTAACCGTGAAAAATCTCTGGAGTACGCGGATGAGTTAGTGGTAAAAGGCTCCAAGGCATCTGAAGATGGAGATTATGGAGAAGCCGTAGAATGCTTTAGCCGTGCCCTGGAAATTCG : GGTCGCACATTTTGGTGAACTTGCTCCTGAATGTATCAATGCATATTATAAATATGGGTGTGCTTTGCTGTACAAAGCTCAGGATGAGGCTGATCCTTTGGTTTCTTTGCCAAAAAAGGACAGCGGGTCTCAACAAGATTCTAATAGAGACGGCTCTGTTAAAAGTGTTGTTAGTTGTGAGTCTTCTATTTCAAGCACTGCTGAACCTGGTGGAAGTTCGAATGGAAAGGAAAAAGTAGAAGATGATG : AGGAAAACGAAGATGAAGGAGATGAAGAAGAAAGTGATGACGAGGACTTGGCTGAAGGTGATGAGGATGAAACTGACCTGGATTTAGCCTGGAAACTGTTAGATGTTGCAAGGGCAATTGCTGAAAAGCACGCTGGTGACACAATGGAAAAAGTGGATGTATTATCAGCTTTGGCTGAGGTAGCCTTGGAAAGAG : AGGATATTGAAACTTCCCTTAGTGATTACCTGAAGGCATTATCCATTTTGGAACGCTTGGTTGAACCTGACAGTCGCCATATTGCTGCGCT : CAACTTTAGGATATGCTTATGCCTGGAAATTGGTTCTAAGCATCAGGAAGCCATACCATACTGCCAAAAAGCTATTTTAACTTGCAAGTCGCGGCTGCAGAGACTCACTGAGGAAATAAAGCTTTTGTCAGAATCAACAGAAAGATTAGCTACTACCGATGTAGATCAGATTGCGAGACAGTCTTCCAGTATATCACAGTCTGACTCTGTATCTGCTAAAGAAGCTGAAGTTGAAACGCTCACTGAACTTTCTGCAGAATTGGAGAAGAAG : CTTGAAGATTTGCAGCAGTGTATGTCAAATCCATCATCTATCCTCTCCGATATTTTGGGAATGGTGTCTGCGAAAGCAAGAAGTCTAGAGAATGCTGATGCTTCTGTAGCTGTGAACTCCTCACAGATGGGTGTTGGTACCAGTGGTAGCGGAAGTTTTGACTCTCCAACTGTTTCCACTGCCCACACAAATGGTGCAGCTGGAATAACCCATCTTGGAGTAGTTGGAAGAGGAGTCAAGAGGGTGCATCTAAACACAACCACAGAATCTAGTCCAGCGAAAAAACCTGCATCTGAGCAGCCGTCAGATAATGGAGATGGCACTGCCTCTTAAAGCATGTATTGTTGGTGCTTCAATTAAGTTACGGTTAACATTTCAATTTAGCTTATTGATAACATTGGTGGATTACCTTAGTTTGTTGCATTCTCTGTTGGTTAGCTGGGAAGTGTGTTGCCACAGATCGCATCAGTTTATTTCCTTAAATTAATTACCTTGTATGCATGTTGACTATTCAG : GGAAAATAAAAGACAATTCA : ATACTTCATTTTCAAAAAAGTGATTTATTTGTTGGGGTGGAGACAAGCAATGATG : TCGTTGATTGATTTCAAAATAATTGTTGTTTTTCAGGTACTCAACGAGGCGAT</gDNA_template>
            <first_frame> F  K  R  E  G  K  S  R  A  Y  K  I  S  A  *  S  S  Y  F  *  S  K  R  R  W  L  R  K  Q  *  F  Q  *  Q  A  L  R  R  S  K  T  R  T  R  *  T  P  P  S  N  L  V  F  R  E  A  Q  N  Q  L  A  T  T  I  I  I  M  R  R  V  L  R  L  L  L  M  L  T  V  K  N  L  W  S  T  R  M  S  *  W  *  K  A  P  R  H  L  K  M  E  I  M  E  K  P  *  N  A  L  A  V  P  W  K  F   : G  S  H  I  L  V  N  L  L  L  N  V  S  M  H  I  I  N  M  G  V  L  C  C  T  K  L  R  M  R  L  I  L  W  F  L  C  Q  K  R  T  A  G  L  N  K  I  L  I  E  T  A  L  L  K  V  L  L  V  V  S  L  L  F  Q  A  L  L  N  L  V  E  V  R  M  E  R  K  K  *  K  M  M  :  R  K  T  K  M  K  E  M  K  K  K  V  M  T  R  T  W  L  K  V  M  R  M  K  L  T  W  I  *  P  G  N  C  *  M  L  Q  G  Q  L  L  K  S  T  L  V  T  Q  W  K  K  W  M  Y  Y  Q  L  W  L  R  *  P  W  K  E  :  R  I  L  K  L  P  L  V  I  T  *  R  H  Y  P  F  W  N  A  W  L  N  L  T  V  A  I  L  L  R   : S  T  L  G  Y  A  Y  A  W  K  L  V  L  S  I  R  K  P  Y  H  T  A  K  K  L  F  *  L  A  S  R  G  C  R  D  S  L  R  K  *  S  F  C  Q  N  Q  Q  K  D  *  L  L  P  M  *  I  R  L  R  D  S  L  P  V  Y  H  S  L  T  L  Y  L  L  K  K  L  K  L  K  R  S  L  N  F  L  Q  N  W  R  R  S :   L  K  I  C  S  S  V  C  Q  I  H  H  L  S  S  P  I  F  W  E  W  C  L  R  K  Q  E  V  *  R  M  L  M  L  L  *  L  *  T  P  H  R  W  V  L  V  P  V  V  A  E  V  L  T  L  Q  L  F  P  L  P  T  Q  M  V  Q  L  E  *  P  I  L  E  *  L  E  E  E  S  R  G  C  I  *  T  Q  P  Q  N  L  V  Q  R  K  N  L  H  L  S  S  R  Q  I  M  E  M  A  L  P  L  K  A  C  I  V  G  A  S  I  K  L  R  L  T  F  Q  F  S  L  L  I  T  L  V  D  Y  L  S  L  L  H  S  L  L  V  S  W  E  V  C  C  H  R  S  H  Q  F  I  S  L  N  *  L  P  C  M  H  V  D  Y  S   : G  K  I  K  D  N  S  :  I  L  H  F  Q  K  S  D  L  F  V  G  V  E  T  S  N  D   : V  V  D  *  F  Q  N  N  C  C  F  S  G  T  Q  R  G  D </first_frame>
            <second_frame>  S  K  E  R  E  N  Q  G  L  I  K  F  P  L  R  V  A  I  S  N  Q  R  D  D  G  *  G  S  S  N  F  S  N  K  P  Y  G  G  A  K  P  E  L  G  E  R  H  H  R  I  W  C  S  G  R  H  R  I  N  L  Q  Q  Q  *  *  *  C  G  E  F  C  G  Y  F  *  C  *  P  *  K  I  S  G  V  R  G  *  V  S  G  K  R  L  Q  G  I  *  R  W  R  L  W  R  S  R  R  M  L  *  P  C  P  G  N  S  :  G  R  T  F  W  *  T  C  S  *  M  Y  Q  C  I  L  *  I  W  V  C  F  A  V  Q  S  S  G  *  G  *  S  F  G  F  F  A  K  K  G  Q  R  V  S  T  R  F  *  *  R  R  L  C  *  K  C  C  *  L  *  V  F  Y  F  K  H  C  *  T  W  W  K  F  E  W  K  G  K  S  R  R  *  * :   G  K  R  R  *  R  R  *  R  R  K  *  *  R  G  L  G  *  R  *  *  G  *  N  *  P  G  F  S  L  E  T  V  R  C  C  K  G  N  C  *  K  A  R  W  *  H  N  G  K  S  G  C  I  I  S  F  G  *  G  S  L  G  K  R :   G  Y  *  N  F  P  *  *  L  P  E  G  I  I  H  F  G  T  L  G  *  T  *  Q  S  P  Y  C  C  A  :  Q  L  *  D  M  L  M  P  G  N  W  F  *  A  S  G  S  H  T  I  L  P  K  S  Y  F  N  L  Q  V  A  A  A  E  T  H  *  G  N  K  A  F  V  R  I  N  R  K  I  S  Y  Y  R  C  R  S  D  C  E  T  V  F  Q  Y  I  T  V  *  L  C  I  C  *  R  S  *  S  *  N  A  H  *  T  F  C  R  I  G  E  E   : A  *  R  F  A  A  V  Y  V  K  S  I  I  Y  P  L  R  Y  F  G  N  G  V  C  E  S  K  K  S  R  E  C  *  C  F  C  S  C  E  L  L  T  D  G  C  W  Y  Q  W  *  R  K  F  *  L  S  N  C  F  H  C  P  H  K  W  C  S  W  N  N  P  S  W  S  S  W  K  R  S  Q  E  G  A  S  K  H  N  H  R  I  *  S  S  E  K  T  C  I  *  A  A  V  R  *  W  R  W  H  C  L  L  K  H  V  L  L  V  L  Q  L  S  Y  G  *  H  F  N  L  A  Y  *  *  H  W  W  I  T  L  V  C  C  I  L  C  W  L  A  G  K  C  V  A  T  D  R  I  S  L  F  P  *  I  N  Y  L  V  C  M  L  T  I  Q  :  G  K  *  K  T  I  Q :   Y  F  I  F  K  K  V  I  Y  L  L  G  W  R  Q  A  M  M  :  S  L  I  D  F  K  I  I  V  V  F  Q  V  L  N  E  A   </second_frame>
            <third_frame>   Q  K  R  G  K  I  K  G  L  *  N  F  R  L  E  *  L  F  L  I  K  E  T  M  A  E  E  A  V  I  S  V  T  S  P  T  A  E  Q  N  Q  N  S  V  N  A  T  I  E  S  G  V  Q  G  G  T  E  S  T  C  N  N  N  N  N  N  A  E  S  S  A  V  T  S  D  V  N  R  E  K  S  L  E  Y  A  D  E  L  V  V  K  G  S  K  A  S  E  D  G  D  Y  G  E  A  V  E  C  F  S  R  A  L  E  I  R :   V  A  H  F  G  E  L  A  P  E  C  I  N  A  Y  Y  K  Y  G  C  A  L  L  Y  K  A  Q  D  E  A  D  P  L  V  S  L  P  K  K  D  S  G  S  Q  Q  D  S  N  R  D  G  S  V  K  S  V  V  S  C  E  S  S  I  S  S  T  A  E  P  G  G  S  S  N  G  K  E  K  V  E  D  D   : E  E  N  E  D  E  G  D  E  E  E  S  D  D  E  D  L  A  E  G  D  E  D  E  T  D  L  D  L  A  W  K  L  L  D  V  A  R  A  I  A  E  K  H  A  G  D  T  M  E  K  V  D  V  L  S  A  L  A  E  V  A  L  E  R   : E  D  I  E  T  S  L  S  D  Y  L  K  A  L  S  I  L  E  R  L  V  E  P  D  S  R  H  I  A  A  L :   N  F  R  I  C  L  C  L  E  I  G  S  K  H  Q  E  A  I  P  Y  C  Q  K  A  I  L  T  C  K  S  R  L  Q  R  L  T  E  E  I  K  L  L  S  E  S  T  E  R  L  A  T  T  D  V  D  Q  I  A  R  Q  S  S  S  I  S  Q  S  D  S  V  S  A  K  E  A  E  V  E  T  L  T  E  L  S  A  E  L  E  K  K  :  L  E  D  L  Q  Q  C  M  S  N  P  S  S  I  L  S  D  I  L  G  M  V  S  A  K  A  R  S  L  E  N  A  D  A  S  V  A  V  N  S  S  Q  M  G  V  G  T  S  G  S  G  S  F  D  S  P  T  V  S  T  A  H  T  N  G  A  A  G  I  T  H  L  G  V  V  G  R  G  V  K  R  V  H  L  N  T  T  T  E  S  S  P  A  K  K  P  A  S  E  Q  P  S  D  N  G  D  G  T  A  S  *  S  M  Y  C  W  C  F  N  *  V  T  V  N  I  S  I  *  L  I  D  N  I  G  G  L  P  *  F  V  A  F  S  V  G  *  L  G  S  V  L  P  Q  I  A  S  V  Y  F  L  K  L  I  T  L  Y  A  C  *  L  F  R :   E  N  K  R  Q  F   : N  T  S  F  S  K  K  *  F  I  C  W  G  G  D  K  Q  *  C :   R  *  L  I  S  K  *  L  L  F  F  R  Y  S  T  R  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0066K03.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33257" stop="33552"/>
                    <exon start="34429" stop="34676"/>
                    <exon start="36287" stop="36481"/>
                    <exon start="37791" stop="37881"/>
                    <exon start="38034" stop="38304"/>
                    <exon start="38385" stop="38717"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1431</number_coding_nucleotides>
                  <number_encoded_amino_acids>477</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFLIKETMAEEAVISVTSPTAEQNQNSVNATIESGVQGGTESTCNNNNNNAESSAVTSDVNREKSLEYADELVVKGSKASEDGDYGEAVECFSRALEIRVAHFGELAPECINAYYKYGCALLYKAQDEADPLVSLPKKDSGSQQDSNRDGSVKSVVSCESSISSTAEPGGSSNGKEKVEDDEENEDEGDEEESDDEDLAEGDEDETDLDLAWKLLDVARAIAEKHAGDTMEKVDVLSALAEVALEREDIETSLSDYLKALSILERLVEPDSRHIAALNFRICLCLEIGSKHQEAIPYCQKAILTCKSRLQRLTEEIKLLSESTERLATTDVDQIARQSSSISQSDSVSAKEAEVETLTELSAELEKKLEDLQQCMSNPSSILSDILGMVSAKARSLENADASVAVNSSQMGVGTSGSGSFDSPTVSTAHTNGAAGITHLGVVGRGVKRVHLNTTTESSPAKKPASEQPSDNGDGTAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="33207" e_stop="33552"/>
            <exon e_start="34429" e_stop="34676"/>
            <exon e_start="36287" e_stop="36481"/>
            <exon e_start="37791" e_stop="37881"/>
            <exon e_start="38034" e_stop="38304"/>
            <exon e_start="38385" e_stop="38904"/>
            <exon e_start="39495" e_stop="39525"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.760" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.245" e_score="1.000"/>
          <exon-intron don_prob="0.908" acc_prob="0.991" e_score="0.988"/>
          <exon-intron don_prob="0.990" acc_prob="0.835" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.608" e_score="0.990"/>
          <exon-only e_score="0.516"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33207" e_stop="33552" e_length="346"/>
          </exon>
          <intron i_serial="1" don_prob="0.760" acc_prob="0.958">
            <gDNA_intron_boundary i_start="33553" i_stop="34428" i_length="876"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34429" e_stop="34676" e_length="248"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.245">
            <gDNA_intron_boundary i_start="34677" i_stop="36286" i_length="1610"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="36287" e_stop="36481" e_length="195"/>
          </exon>
          <intron i_serial="3" don_prob="0.908" acc_prob="0.991">
            <gDNA_intron_boundary i_start="36482" i_stop="37790" i_length="1309"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="37791" e_stop="37881" e_length="91"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.835">
            <gDNA_intron_boundary i_start="37882" i_stop="38033" i_length="152"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="38034" e_stop="38304" e_length="271"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="38305" i_stop="38384" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="0.990">
            <gDNA_exon_boundary e_start="38385" e_stop="38904" e_length="520"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.608">
            <gDNA_intron_boundary i_start="38905" i_stop="39494" i_length="590"/>
          </intron>
          <exon e_serial="7" e_score="0.516">
            <gDNA_exon_boundary e_start="39495" e_stop="39525" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33207" stop="33552"/>
              <exon start="34429" stop="34650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33219" stop="33552"/>
              <exon start="34429" stop="34676"/>
              <exon start="36287" stop="36457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33220" stop="33552"/>
              <exon start="34429" stop="34460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33227" stop="33552"/>
              <exon start="34429" stop="34507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33379" stop="33552"/>
              <exon start="34429" stop="34495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300343" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36452" stop="36481"/>
              <exon start="37791" stop="37881"/>
              <exon start="38034" stop="38304"/>
              <exon start="38385" stop="38698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36455" stop="36481"/>
              <exon start="37791" stop="37881"/>
              <exon start="38034" stop="38159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38051" stop="38304"/>
              <exon start="38385" stop="38904"/>
              <exon start="39495" stop="39525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548675" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCAAAAGAGAGGGAAAATCAAGGGCTTATAAAATTTCCGCTTAGAGTAGCTATTTCTAATCAAAGAGACGATGGCTGAGGAAGCAGTAATTTCAGTAACAAGCCCTACGGCGGAGCAAAACCAGAACTCGGTGAACGCCACCATCGAATCTGGTGTTCAGGGAGGCACAGAATCAACTTGCAACAACAATAATAATAATGCGGAGAGTTCTGCGGTTACTTCTGATGTTAACCGTGAAAAATCTCTGGAGTACGCGGATGAGTTAGTGGTAAAAGGCTCCAAGGCATCTGAAGATGGAGATTATGGAGAAGCCGTAGAATGCTTTAGCCGTGCCCTGGAAATTCG : GGTCGCACATTTTGGTGAACTTGCTCCTGAATGTATCAATGCATATTATAAATATGGGTGTGCTTTGCTGTACAAAGCTCAGGATGAGGCTGATCCTTTGGTTTCTTTGCCAAAAAAGGACAGCGGGTCTCAACAAGATTCTAATAGAGACGGCTCTGTTAAAAGTGTTGTTAGTTGTGAGTCTTCTATTTCAAGCACTGCTGAACCTGGTGGAAGTTCGAATGGAAAGGAAAAAGTAGAAGATGATG : AGGAAAACGAAGATGAAGGAGATGAAGAAGAAAGTGATGACGAGGACTTGGCTGAAGGTGATGAGGATGAAACTGACCTGGATTTAGCCTGGAAACTGTTAGATGTTGCAAGGGCAATTGCTGAAAAGCACGCTGGTGACACAATGGAAAAAGTGGATGTATTATCAGCTTTGGCTGAGGTAGCCTTGGAAAGAG : AGGATATTGAAACTTCCCTTAGTGATTACCTGAAGGCATTATCCATTTTGGAACGCTTGGTTGAACCTGACAGTCGCCATATTGCTGCGCT : CAACTTTAGGATATGCTTATGCCTGGAAATTGGTTCTAAGCATCAGGAAGCCATACCATACTGCCAAAAAGCTATTTTAACTTGCAAGTCGCGGCTGCAGAGACTCACTGAGGAAATAAAGCTTTTGTCAGAATCAACAGAAAGATTAGCTACTACCGATGTAGATCAGATTGCGAGACAGTCTTCCAGTATATCACAGTCTGACTCTGTATCTGCTAAAGAAGCTGAAGTTGAAACGCTCACTGAACTTTCTGCAGAATTGGAGAAGAAG : CTTGAAGATTTGCAGCAGTGTATGTCAAATCCATCATCTATCCTCTCCGATATTTTGGGAATGGTGTCTGCGAAAGCAAGAAGTCTAGAGAATGCTGATGCTTCTGTAGCTGTGAACTCCTCACAGATGGGTGTTGGTACCAGTGGTAGCGGAAGTTTTGACTCTCCAACTGTTTCCACTGCCCACACAAATGGTGCAGCTGGAATAACCCATCTTGGAGTAGTTGGAAGAGGAGTCAAGAGGGTGCATCTAAACACAACCACAGAATCTAGTCCAGCGAAAAAACCTGCATCTGAGCAGCCGTCAGATAATGGAGATGGCACTGCCTCTTAAAGCATGTATTGTTGGTGCTTCAATTAAGTTACGGTTAACATTTCAATTTAGCTTATTGATAACATTGGTGGATTACCTTAGTTTGTTGCATTCTCTGTTGGTTAGCTGGGAAGTGTGTTGCCACAGATCGCATCAGTTTATTTCCTTAAATTAATTACCTTGTATGCATGTTGACTATTCAGTATGT : GGAAAATAAAAGACAATTCAGTGGTAGAATA</gDNA_template>
            <first_frame> F  K  R  E  G  K  S  R  A  Y  K  I  S  A  *  S  S  Y  F  *  S  K  R  R  W  L  R  K  Q  *  F  Q  *  Q  A  L  R  R  S  K  T  R  T  R  *  T  P  P  S  N  L  V  F  R  E  A  Q  N  Q  L  A  T  T  I  I  I  M  R  R  V  L  R  L  L  L  M  L  T  V  K  N  L  W  S  T  R  M  S  *  W  *  K  A  P  R  H  L  K  M  E  I  M  E  K  P  *  N  A  L  A  V  P  W  K  F   : G  S  H  I  L  V  N  L  L  L  N  V  S  M  H  I  I  N  M  G  V  L  C  C  T  K  L  R  M  R  L  I  L  W  F  L  C  Q  K  R  T  A  G  L  N  K  I  L  I  E  T  A  L  L  K  V  L  L  V  V  S  L  L  F  Q  A  L  L  N  L  V  E  V  R  M  E  R  K  K  *  K  M  M  :  R  K  T  K  M  K  E  M  K  K  K  V  M  T  R  T  W  L  K  V  M  R  M  K  L  T  W  I  *  P  G  N  C  *  M  L  Q  G  Q  L  L  K  S  T  L  V  T  Q  W  K  K  W  M  Y  Y  Q  L  W  L  R  *  P  W  K  E  :  R  I  L  K  L  P  L  V  I  T  *  R  H  Y  P  F  W  N  A  W  L  N  L  T  V  A  I  L  L  R   : S  T  L  G  Y  A  Y  A  W  K  L  V  L  S  I  R  K  P  Y  H  T  A  K  K  L  F  *  L  A  S  R  G  C  R  D  S  L  R  K  *  S  F  C  Q  N  Q  Q  K  D  *  L  L  P  M  *  I  R  L  R  D  S  L  P  V  Y  H  S  L  T  L  Y  L  L  K  K  L  K  L  K  R  S  L  N  F  L  Q  N  W  R  R  S :   L  K  I  C  S  S  V  C  Q  I  H  H  L  S  S  P  I  F  W  E  W  C  L  R  K  Q  E  V  *  R  M  L  M  L  L  *  L  *  T  P  H  R  W  V  L  V  P  V  V  A  E  V  L  T  L  Q  L  F  P  L  P  T  Q  M  V  Q  L  E  *  P  I  L  E  *  L  E  E  E  S  R  G  C  I  *  T  Q  P  Q  N  L  V  Q  R  K  N  L  H  L  S  S  R  Q  I  M  E  M  A  L  P  L  K  A  C  I  V  G  A  S  I  K  L  R  L  T  F  Q  F  S  L  L  I  T  L  V  D  Y  L  S  L  L  H  S  L  L  V  S  W  E  V  C  C  H  R  S  H  Q  F  I  S  L  N  *  L  P  C  M  H  V  D  Y  S  V  C  :  G  K  *  K  T  I  Q  W  *  N  </first_frame>
            <second_frame>  S  K  E  R  E  N  Q  G  L  I  K  F  P  L  R  V  A  I  S  N  Q  R  D  D  G  *  G  S  S  N  F  S  N  K  P  Y  G  G  A  K  P  E  L  G  E  R  H  H  R  I  W  C  S  G  R  H  R  I  N  L  Q  Q  Q  *  *  *  C  G  E  F  C  G  Y  F  *  C  *  P  *  K  I  S  G  V  R  G  *  V  S  G  K  R  L  Q  G  I  *  R  W  R  L  W  R  S  R  R  M  L  *  P  C  P  G  N  S  :  G  R  T  F  W  *  T  C  S  *  M  Y  Q  C  I  L  *  I  W  V  C  F  A  V  Q  S  S  G  *  G  *  S  F  G  F  F  A  K  K  G  Q  R  V  S  T  R  F  *  *  R  R  L  C  *  K  C  C  *  L  *  V  F  Y  F  K  H  C  *  T  W  W  K  F  E  W  K  G  K  S  R  R  *  * :   G  K  R  R  *  R  R  *  R  R  K  *  *  R  G  L  G  *  R  *  *  G  *  N  *  P  G  F  S  L  E  T  V  R  C  C  K  G  N  C  *  K  A  R  W  *  H  N  G  K  S  G  C  I  I  S  F  G  *  G  S  L  G  K  R :   G  Y  *  N  F  P  *  *  L  P  E  G  I  I  H  F  G  T  L  G  *  T  *  Q  S  P  Y  C  C  A  :  Q  L  *  D  M  L  M  P  G  N  W  F  *  A  S  G  S  H  T  I  L  P  K  S  Y  F  N  L  Q  V  A  A  A  E  T  H  *  G  N  K  A  F  V  R  I  N  R  K  I  S  Y  Y  R  C  R  S  D  C  E  T  V  F  Q  Y  I  T  V  *  L  C  I  C  *  R  S  *  S  *  N  A  H  *  T  F  C  R  I  G  E  E   : A  *  R  F  A  A  V  Y  V  K  S  I  I  Y  P  L  R  Y  F  G  N  G  V  C  E  S  K  K  S  R  E  C  *  C  F  C  S  C  E  L  L  T  D  G  C  W  Y  Q  W  *  R  K  F  *  L  S  N  C  F  H  C  P  H  K  W  C  S  W  N  N  P  S  W  S  S  W  K  R  S  Q  E  G  A  S  K  H  N  H  R  I  *  S  S  E  K  T  C  I  *  A  A  V  R  *  W  R  W  H  C  L  L  K  H  V  L  L  V  L  Q  L  S  Y  G  *  H  F  N  L  A  Y  *  *  H  W  W  I  T  L  V  C  C  I  L  C  W  L  A  G  K  C  V  A  T  D  R  I  S  L  F  P  *  I  N  Y  L  V  C  M  L  T  I  Q  Y  V :   E  N  K  R  Q  F  S  G  R  I </second_frame>
            <third_frame>   Q  K  R  G  K  I  K  G  L  *  N  F  R  L  E  *  L  F  L  I  K  E  T  M  A  E  E  A  V  I  S  V  T  S  P  T  A  E  Q  N  Q  N  S  V  N  A  T  I  E  S  G  V  Q  G  G  T  E  S  T  C  N  N  N  N  N  N  A  E  S  S  A  V  T  S  D  V  N  R  E  K  S  L  E  Y  A  D  E  L  V  V  K  G  S  K  A  S  E  D  G  D  Y  G  E  A  V  E  C  F  S  R  A  L  E  I  R :   V  A  H  F  G  E  L  A  P  E  C  I  N  A  Y  Y  K  Y  G  C  A  L  L  Y  K  A  Q  D  E  A  D  P  L  V  S  L  P  K  K  D  S  G  S  Q  Q  D  S  N  R  D  G  S  V  K  S  V  V  S  C  E  S  S  I  S  S  T  A  E  P  G  G  S  S  N  G  K  E  K  V  E  D  D   : E  E  N  E  D  E  G  D  E  E  E  S  D  D  E  D  L  A  E  G  D  E  D  E  T  D  L  D  L  A  W  K  L  L  D  V  A  R  A  I  A  E  K  H  A  G  D  T  M  E  K  V  D  V  L  S  A  L  A  E  V  A  L  E  R   : E  D  I  E  T  S  L  S  D  Y  L  K  A  L  S  I  L  E  R  L  V  E  P  D  S  R  H  I  A  A  L :   N  F  R  I  C  L  C  L  E  I  G  S  K  H  Q  E  A  I  P  Y  C  Q  K  A  I  L  T  C  K  S  R  L  Q  R  L  T  E  E  I  K  L  L  S  E  S  T  E  R  L  A  T  T  D  V  D  Q  I  A  R  Q  S  S  S  I  S  Q  S  D  S  V  S  A  K  E  A  E  V  E  T  L  T  E  L  S  A  E  L  E  K  K  :  L  E  D  L  Q  Q  C  M  S  N  P  S  S  I  L  S  D  I  L  G  M  V  S  A  K  A  R  S  L  E  N  A  D  A  S  V  A  V  N  S  S  Q  M  G  V  G  T  S  G  S  G  S  F  D  S  P  T  V  S  T  A  H  T  N  G  A  A  G  I  T  H  L  G  V  V  G  R  G  V  K  R  V  H  L  N  T  T  T  E  S  S  P  A  K  K  P  A  S  E  Q  P  S  D  N  G  D  G  T  A  S  *  S  M  Y  C  W  C  F  N  *  V  T  V  N  I  S  I  *  L  I  D  N  I  G  G  L  P  *  F  V  A  F  S  V  G  *  L  G  S  V  L  P  Q  I  A  S  V  Y  F  L  K  L  I  T  L  Y  A  C  *  L  F  S  M   : W  K  I  K  D  N  S  V  V  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0066K03.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33257" stop="33552"/>
                    <exon start="34429" stop="34676"/>
                    <exon start="36287" stop="36481"/>
                    <exon start="37791" stop="37881"/>
                    <exon start="38034" stop="38304"/>
                    <exon start="38385" stop="38717"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1431</number_coding_nucleotides>
                  <number_encoded_amino_acids>477</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFLIKETMAEEAVISVTSPTAEQNQNSVNATIESGVQGGTESTCNNNNNNAESSAVTSDVNREKSLEYADELVVKGSKASEDGDYGEAVECFSRALEIRVAHFGELAPECINAYYKYGCALLYKAQDEADPLVSLPKKDSGSQQDSNRDGSVKSVVSCESSISSTAEPGGSSNGKEKVEDDEENEDEGDEEESDDEDLAEGDEDETDLDLAWKLLDVARAIAEKHAGDTMEKVDVLSALAEVALEREDIETSLSDYLKALSILERLVEPDSRHIAALNFRICLCLEIGSKHQEAIPYCQKAILTCKSRLQRLTEEIKLLSESTERLATTDVDQIARQSSSISQSDSVSAKEAEVETLTELSAELEKKLEDLQQCMSNPSSILSDILGMVSAKARSLENADASVAVNSSQMGVGTSGSGSFDSPTVSTAHTNGAAGITHLGVVGRGVKRVHLNTTTESSPAKKPASEQPSDNGDGTAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="44369" PGL_stop="45031"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44369" e_stop="44840"/>
            <exon e_start="44929" e_stop="45031"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44369" e_stop="44840" e_length="472"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="44841" i_stop="44928" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44929" e_stop="45031" e_length="103"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44369" stop="44840"/>
              <exon start="44929" stop="44981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44369" stop="44759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44369" stop="44707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44515" stop="44840"/>
              <exon start="44929" stop="45031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302095" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACCAACCTTCCTACAGAGATTAGCTCAAGAACTTCAACAACCACAAGGATTCTCTTCGGCTTATTGAGAACAGCAAACATACTAAATGCTTCGGAAGCTGCTCGAGCTGCACTAGAGCGGAAAATCGGATCTCAACTGGAGCACGCCACATTAGACGATCTTCTCATTCCAAGCTACTCTTATCTGAATGAAACGTTATACGATGTCGCTTGTGTGGAGAGAATATTAGGATATTTTTTAACCGGATTGGAAGAGAGGTCTACCGCTAGAATTCAAGGCGAAGAAGAAAACATCAGTGTCAGATCCACGGCGCTAATGTTAGTCGGCAAGTTAATTGACGGTTACTTATCAGAAATAGCCTCTGATAATAATTTACTACCGGAAAAATTCTGTGAATTAGCTGTTGCATTGCCGGACCAAGCAAGACTCTTTGATGATGGCCTTTACAGAGCTGTCGATGTGTATCTCAAG : GCGCATCCATGGATATCGGAAGCGGAGAGGGAGCAAATATGCGGAGTTATGGATTGCCAAAAGTTAACACTAGAGGCGTGTACACACGCAGCTCAGAATGAAC</gDNA_template>
            <first_frame> Y  Q  P  S  Y  R  D  *  L  K  N  F  N  N  H  K  D  S  L  R  L  I  E  N  S  K  H  T  K  C  F  G  S  C  S  S  C  T  R  A  E  N  R  I  S  T  G  A  R  H  I  R  R  S  S  H  S  K  L  L  L  S  E  *  N  V  I  R  C  R  L  C  G  E  N  I  R  I  F  F  N  R  I  G  R  E  V  Y  R  *  N  S  R  R  R  R  K  H  Q  C  Q  I  H  G  A  N  V  S  R  Q  V  N  *  R  L  L  I  R  N  S  L  *  *  *  F  T  T  G  K  I  L  *  I  S  C  C  I  A  G  P  S  K  T  L  *  *  W  P  L  Q  S  C  R  C  V  S  Q   : G  A  S  M  D  I  G  S  G  E  G  A  N  M  R  S  Y  G  L  P  K  V  N  T  R  G  V  Y  T  R  S  S  E  *   </first_frame>
            <second_frame>  T  N  L  P  T  E  I  S  S  R  T  S  T  T  T  R  I  L  F  G  L  L  R  T  A  N  I  L  N  A  S  E  A  A  R  A  A  L  E  R  K  I  G  S  Q  L  E  H  A  T  L  D  D  L  L  I  P  S  Y  S  Y  L  N  E  T  L  Y  D  V  A  C  V  E  R  I  L  G  Y  F  L  T  G  L  E  E  R  S  T  A  R  I  Q  G  E  E  E  N  I  S  V  R  S  T  A  L  M  L  V  G  K  L  I  D  G  Y  L  S  E  I  A  S  D  N  N  L  L  P  E  K  F  C  E  L  A  V  A  L  P  D  Q  A  R  L  F  D  D  G  L  Y  R  A  V  D  V  Y  L  K  :  A  H  P  W  I  S  E  A  E  R  E  Q  I  C  G  V  M  D  C  Q  K  L  T  L  E  A  C  T  H  A  A  Q  N  E  </second_frame>
            <third_frame>   P  T  F  L  Q  R  L  A  Q  E  L  Q  Q  P  Q  G  F  S  S  A  Y  *  E  Q  Q  T  Y  *  M  L  R  K  L  L  E  L  H  *  S  G  K  S  D  L  N  W  S  T  P  H  *  T  I  F  S  F  Q  A  T  L  I  *  M  K  R  Y  T  M  S  L  V  W  R  E  Y  *  D  I  F  *  P  D  W  K  R  G  L  P  L  E  F  K  A  K  K  K  T  S  V  S  D  P  R  R  *  C  *  S  A  S  *  L  T  V  T  Y  Q  K  *  P  L  I  I  I  Y  Y  R  K  N  S  V  N  *  L  L  H  C  R  T  K  Q  D  S  L  M  M  A  F  T  E  L  S  M  C  I  S  R :   R  I  H  G  Y  R  K  R  R  G  S  K  Y  A  E  L  W  I  A  K  S  *  H  *  R  R  V  H  T  Q  L  R  M  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0066K03.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44370" stop="44840"/>
                    <exon start="44929" stop="45030"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNLPTEISSRTSTTTRILFGLLRTANILNASEAARAALERKIGSQLEHATLDDLLIPSYSYLNETLYDVACVERILGYFLTGLEERSTARIQGEEENISVRSTALMLVGKLIDGYLSEIASDNNLLPEKFCELAVALPDQARLFDDGLYRAVDVYLKAHPWISEAEREQICGVMDCQKLTLEACTHAAQNE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="47447" PGL_stop="47912"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47447" e_stop="47912"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47447" e_stop="47912" e_length="466"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47447" stop="47912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339354" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTTCAGTAGATCTCTTACATTGCATTAAGGATATGATTATATTTTTTTATTTCTGTTTTTGTGTTTAAATCGTGAATGTTGAAGTATTAGTTCCTCAATGATGAACAAACAGATGACGAGTCTGATAATCCATTCTTTTAAAATAATGAAGACAATCGAGGCATTTGTCTGAGAGGAAATCCTATTTGCTACTTCTACCTCGTTATTACTACTTCGCTTTTTGGTTTTTGATTGTTTATGAGATTTTAAATCTGGTATAGCAATCGCTCTTGATTATATAACCAAGTTTTCATTTTTTAAAAAAGAGATTTAAAAGTTTCATTCTGTAGTTCCTTTTGAGTTTAGAGTAAGATTTGCGCTTGAAATGCGTGGTAACATGTTACCAATTCCAAAAATGTTTTCCTTTTGAACTTTTGTGAGATCTGTGCTTTCAATGTGTGATTTTAGGGCTTCACTCCAAAACA</gDNA_template>
            <first_frame> F  F  S  R  S  L  T  L  H  *  G  Y  D  Y  I  F  L  F  L  F  L  C  L  N  R  E  C  *  S  I  S  S  S  M  M  N  K  Q  M  T  S  L  I  I  H  S  F  K  I  M  K  T  I  E  A  F  V  *  E  E  I  L  F  A  T  S  T  S  L  L  L  L  R  F  L  V  F  D  C  L  *  D  F  K  S  G  I  A  I  A  L  D  Y  I  T  K  F  S  F  F  K  K  E  I  *  K  F  H  S  V  V  P  F  E  F  R  V  R  F  A  L  E  M  R  G  N  M  L  P  I  P  K  M  F  S  F  *  T  F  V  R  S  V  L  S  M  C  D  F  R  A  S  L  Q  N  </first_frame>
            <second_frame>  S  S  V  D  L  L  H  C  I  K  D  M  I  I  F  F  Y  F  C  F  C  V  *  I  V  N  V  E  V  L  V  P  Q  *  *  T  N  R  *  R  V  *  *  S  I  L  L  K  *  *  R  Q  S  R  H  L  S  E  R  K  S  Y  L  L  L  L  P  R  Y  Y  Y  F  A  F  W  F  L  I  V  Y  E  I  L  N  L  V  *  Q  S  L  L  I  I  *  P  S  F  H  F  L  K  K  R  F  K  S  F  I  L  *  F  L  L  S  L  E  *  D  L  R  L  K  C  V  V  T  C  Y  Q  F  Q  K  C  F  P  F  E  L  L  *  D  L  C  F  Q  C  V  I  L  G  L  H  S  K  T </second_frame>
            <third_frame>   L  Q  *  I  S  Y  I  A  L  R  I  *  L  Y  F  F  I  S  V  F  V  F  K  S  *  M  L  K  Y  *  F  L  N  D  E  Q  T  D  D  E  S  D  N  P  F  F  *  N  N  E  D  N  R  G  I  C  L  R  G  N  P  I  C  Y  F  Y  L  V  I  T  T  S  L  F  G  F  *  L  F  M  R  F  *  I  W  Y  S  N  R  S  *  L  Y  N  Q  V  F  I  F  *  K  R  D  L  K  V  S  F  C  S  S  F  *  V  *  S  K  I  C  A  *  N  A  W  *  H  V  T  N  S  K  N  V  F  L  L  N  F  C  E  I  C  A  F  N  V  *  F  *  G  F  T  P  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0066K03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="53337" PGL_stop="50329"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53337" e_stop="53283"/>
            <exon e_start="53172" e_stop="53074"/>
            <exon e_start="52984" e_stop="52911"/>
            <exon e_start="52807" e_stop="52573"/>
            <exon e_start="51035" e_stop="50535"/>
            <exon e_start="50444" e_stop="50329"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="0.161" acc_prob="0.668" e_score="1.000"/>
          <exon-intron don_prob="0.577" acc_prob="0.765" e_score="1.000"/>
          <exon-intron don_prob="0.599" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53337" e_stop="53283" e_length="55"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.925">
            <gDNA_intron_boundary i_start="53282" i_stop="53173" i_length="110"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53172" e_stop="53074" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.161" acc_prob="0.668">
            <gDNA_intron_boundary i_start="53073" i_stop="52985" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52984" e_stop="52911" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.577" acc_prob="0.765">
            <gDNA_intron_boundary i_start="52910" i_stop="52808" i_length="103"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52807" e_stop="52573" e_length="235"/>
          </exon>
          <intron i_serial="4" don_prob="0.599" acc_prob="0.941">
            <gDNA_intron_boundary i_start="52572" i_stop="51036" i_length="1537"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="51035" e_stop="50535" e_length="501"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="0.000">
            <gDNA_intron_boundary i_start="50534" i_stop="50445" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="50444" e_stop="50329" e_length="116"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53337" stop="53283"/>
              <exon start="53172" stop="53074"/>
              <exon start="52984" stop="52911"/>
              <exon start="52807" stop="52761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53336" stop="53283"/>
              <exon start="53172" stop="53074"/>
              <exon start="52984" stop="52911"/>
              <exon start="52807" stop="52753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53336" stop="53283"/>
              <exon start="53172" stop="53074"/>
              <exon start="52984" stop="52911"/>
              <exon start="52807" stop="52792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53156" stop="53074"/>
              <exon start="52984" stop="52911"/>
              <exon start="52807" stop="52573"/>
              <exon start="51035" stop="50790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53155" stop="53074"/>
              <exon start="52984" stop="52911"/>
              <exon start="52807" stop="52573"/>
              <exon start="51035" stop="50708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50995" stop="50535"/>
              <exon start="50444" stop="50329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253375" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTCGTTGCACAGAAGCCTGATACATGATGGATCATCTTTGTTTATTCCAGATAA : TGGGTTCGGGTGTCATCTGAGTTCCCTTAACAAATTGAATGCAAGTGATGGTTCATATAAACTCTCAGGATATATCTCTGGTATGTTCACACAGTGAAG : GTCTTTCAATATTTTTGTATGAACTTATTTCAGTATATTTTCCTGAACAAAGAAAATGGAAACTAATCGTTGGG : ATATCAATTCAAGATTTATTTCCAAAAGACCAACACATAAATTACTTAATAACATAGAGATGAGTTTTGGTAGTGCTTCTGACATTGAGTAGCGAAATAGATCTCAGATTTTTTTTTGAGACAGTAACAACAAAATAGATCTCAGATTTATCCACTGTGTTTTTTGAACCTGAACTGCTCAAGATCTTTACATGATTTGACTTTGGAGCCTTCAATGACCTCTGTGGAACTTAAG : AGGGTTATTTCCTGTTAAACATGAGGCTGCTGTCACATATGATTTTGGAAACATCGAACGTAATCTCTTGGTCCCTGCCATAAATAATTTGGAGAAAGAGGACTGCAAAGTGTGATCTCAATTTTATGCTCTTTCTAGTGAGAAGATGTCCAGAATAGAGGAACTTGTTACATGGGATGTTTATGGTTCAGGTCCTTCTGAATTCTATTATGATGGAGATGATTTGACACATGCAATCTCATGGTGAAGAGATTCTTAAGAATTATTTGATACCACGAGCTATGCTCTCCTCTAGGGTGGATGGTGACTTACATAAATGGATTGATGCTGGAAGTCGAGGTAAAACAGATGAGCTTATTAGGAAGAAGAAGAGTACAAAAAGTCATTCAGCTCCTCCATTTTACCAAGGCAAGAAGAAGTTCTTTGCCACGGCTGAGTCTTCAAGAAAGGCAGCAGGAAATAAGAATATTATGACTGTTCATGATGTGCCACTCATGCCAG : CTGTAAGGAGACTGCATCATTCTGTAGAAGCTATCTGCTTGGAGCTTCACGACAGTCATCCCATCAATGTGATCAATCTTCCACCCCAAGTTGCGGTGACAGTGAATTCTCTGATG</gDNA_template>
            <first_frame> V  R  C  T  E  A  *  Y  M  M  D  H  L  C  L  F  Q  I   : M  G  S  G  V  I  *  V  P  L  T  N  *  M  Q  V  M  V  H  I  N  S  Q  D  I  S  L  V  C  S  H  S  E   : G  L  S  I  F  L  Y  E  L  I  S  V  Y  F  P  E  Q  R  K  W  K  L  I  V  G  :  I  S  I  Q  D  L  F  P  K  D  Q  H  I  N  Y  L  I  T  *  R  *  V  L  V  V  L  L  T  L  S  S  E  I  D  L  R  F  F  F  E  T  V  T  T  K  *  I  S  D  L  S  T  V  F  F  E  P  E  L  L  K  I  F  T  *  F  D  F  G  A  F  N  D  L  C  G  T  *   : E  G  Y  F  L  L  N  M  R  L  L  S  H  M  I  L  E  T  S  N  V  I  S  W  S  L  P  *  I  I  W  R  K  R  T  A  K  C  D  L  N  F  M  L  F  L  V  R  R  C  P  E  *  R  N  L  L  H  G  M  F  M  V  Q  V  L  L  N  S  I  M  M  E  M  I  *  H  M  Q  S  H  G  E  E  I  L  K  N  Y  L  I  P  R  A  M  L  S  S  R  V  D  G  D  L  H  K  W  I  D  A  G  S  R  G  K  T  D  E  L  I  R  K  K  K  S  T  K  S  H  S  A  P  P  F  Y  Q  G  K  K  K  F  F  A  T  A  E  S  S  R  K  A  A  G  N  K  N  I  M  T  V  H  D  V  P  L  M  P   : A  V  R  R  L  H  H  S  V  E  A  I  C  L  E  L  H  D  S  H  P  I  N  V  I  N  L  P  P  Q  V  A  V  T  V  N  S  L  M </first_frame>
            <second_frame>  F  V  A  Q  K  P  D  T  *  W  I  I  F  V  Y  S  R  *  :  W  V  R  V  S  S  E  F  P  *  Q  I  E  C  K  *  W  F  I  *  T  L  R  I  Y  L  W  Y  V  H  T  V  K  :  V  F  Q  Y  F  C  M  N  L  F  Q  Y  I  F  L  N  K  E  N  G  N  *  S  L  G :   Y  Q  F  K  I  Y  F  Q  K  T  N  T  *  I  T  *  *  H  R  D  E  F  W  *  C  F  *  H  *  V  A  K  *  I  S  D  F  F  L  R  Q  *  Q  Q  N  R  S  Q  I  Y  P  L  C  F  L  N  L  N  C  S  R  S  L  H  D  L  T  L  E  P  S  M  T  S  V  E  L  K  :  R  V  I  S  C  *  T  *  G  C  C  H  I  *  F  W  K  H  R  T  *  S  L  G  P  C  H  K  *  F  G  E  R  G  L  Q  S  V  I  S  I  L  C  S  F  *  *  E  D  V  Q  N  R  G  T  C  Y  M  G  C  L  W  F  R  S  F  *  I  L  L  *  W  R  *  F  D  T  C  N  L  M  V  K  R  F  L  R  I  I  *  Y  H  E  L  C  S  P  L  G  W  M  V  T  Y  I  N  G  L  M  L  E  V  E  V  K  Q  M  S  L  L  G  R  R  R  V  Q  K  V  I  Q  L  L  H  F  T  K  A  R  R  S  S  L  P  R  L  S  L  Q  E  R  Q  Q  E  I  R  I  L  *  L  F  M  M  C  H  S  C  Q  :  L  *  G  D  C  I  I  L  *  K  L  S  A  W  S  F  T  T  V  I  P  S  M  *  S  I  F  H  P  K  L  R  *  Q  *  I  L  *   </second_frame>
            <third_frame>   S  L  H  R  S  L  I  H  D  G  S  S  L  F  I  P  D  N :   G  F  G  C  H  L  S  S  L  N  K  L  N  A  S  D  G  S  Y  K  L  S  G  Y  I  S  G  M  F  T  Q  *  R :   S  F  N  I  F  V  *  T  Y  F  S  I  F  S  *  T  K  K  M  E  T  N  R  W   : D  I  N  S  R  F  I  S  K  R  P  T  H  K  L  L  N  N  I  E  M  S  F  G  S  A  S  D  I  E  *  R  N  R  S  Q  I  F  F  *  D  S  N  N  K  I  D  L  R  F  I  H  C  V  F  *  T  *  T  A  Q  D  L  Y  M  I  *  L  W  S  L  Q  *  P  L  W  N  L  R :   G  L  F  P  V  K  H  E  A  A  V  T  Y  D  F  G  N  I  E  R  N  L  L  V  P  A  I  N  N  L  E  K  E  D  C  K  V  *  S  Q  F  Y  A  L  S  S  E  K  M  S  R  I  E  E  L  V  T  W  D  V  Y  G  S  G  P  S  E  F  Y  Y  D  G  D  D  L  T  H  A  I  S  W  *  R  D  S  *  E  L  F  D  T  T  S  Y  A  L  L  *  G  G  W  *  L  T  *  M  D  *  C  W  K  S  R  *  N  R  *  A  Y  *  E  E  E  E  Y  K  K  S  F  S  S  S  I  L  P  R  Q  E  E  V  L  C  H  G  *  V  F  K  K  G  S  R  K  *  E  Y  Y  D  C  S  *  C  A  T  H  A  S :   C  K  E  T  A  S  F  C  R  S  Y  L  L  G  A  S  R  Q  S  S  H  Q  C  D  Q  S  S  T  P  S  C  G  D  S  E  F  S  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0066K03.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50808" stop="50535"/>
                    <exon start="50444" stop="50329"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HMQSHGEEILKNYLIPRAMLSSRVDGDLHKWIDAGSRGKTDELIRKKKSTKSHSAPPFYQGKKKFFATAESSRKAAGNKNIMTVHDVPLMPAVRRLHHSVEAICLELHDSHPINVINLPPQVAVTVNSLM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="53337" e_stop="53283"/>
            <exon e_start="53172" e_stop="53074"/>
            <exon e_start="52984" e_stop="52911"/>
            <exon e_start="52807" e_stop="52573"/>
            <exon e_start="50844" e_stop="50740"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="0.161" acc_prob="0.668" e_score="1.000"/>
          <exon-intron don_prob="0.577" acc_prob="0.765" e_score="1.000"/>
          <exon-intron don_prob="0.599" acc_prob="0.765" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53337" e_stop="53283" e_length="55"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.925">
            <gDNA_intron_boundary i_start="53282" i_stop="53173" i_length="110"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="53172" e_stop="53074" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.161" acc_prob="0.668">
            <gDNA_intron_boundary i_start="53073" i_stop="52985" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52984" e_stop="52911" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.577" acc_prob="0.765">
            <gDNA_intron_boundary i_start="52910" i_stop="52808" i_length="103"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="52807" e_stop="52573" e_length="235"/>
          </exon>
          <intron i_serial="4" don_prob="0.599" acc_prob="0.765">
            <gDNA_intron_boundary i_start="52572" i_stop="50845" i_length="1728"/>
          </intron>
          <exon e_serial="5" e_score="0.981">
            <gDNA_exon_boundary e_start="50844" e_stop="50740" e_length="105"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53337" stop="53283"/>
              <exon start="53172" stop="53074"/>
              <exon start="52984" stop="52911"/>
              <exon start="52807" stop="52573"/>
              <exon start="50844" stop="50745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53337" stop="53283"/>
              <exon start="53172" stop="53074"/>
              <exon start="52984" stop="52911"/>
              <exon start="52807" stop="52761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53336" stop="53283"/>
              <exon start="53172" stop="53074"/>
              <exon start="52984" stop="52911"/>
              <exon start="52807" stop="52753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53336" stop="53283"/>
              <exon start="53172" stop="53074"/>
              <exon start="52984" stop="52911"/>
              <exon start="52807" stop="52792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53324" stop="53283"/>
              <exon start="53172" stop="53074"/>
              <exon start="52984" stop="52911"/>
              <exon start="52807" stop="52573"/>
              <exon start="50844" stop="50740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378783" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTCGTTGCACAGAAGCCTGATACATGATGGATCATCTTTGTTTATTCCAGATAA : TGGGTTCGGGTGTCATCTGAGTTCCCTTAACAAATTGAATGCAAGTGATGGTTCATATAAACTCTCAGGATATATCTCTGGTATGTTCACACAGTGAAG : GTCTTTCAATATTTTTGTATGAACTTATTTCAGTATATTTTCCTGAACAAAGAAAATGGAAACTAATCGTTGGG : ATATCAATTCAAGATTTATTTCCAAAAGACCAACACATAAATTACTTAATAACATAGAGATGAGTTTTGGTAGTGCTTCTGACATTGAGTAGCGAAATAGATCTCAGATTTTTTTTTGAGACAGTAACAACAAAATAGATCTCAGATTTATCCACTGTGTTTTTTGAACCTGAACTGCTCAAGATCTTTACATGATTTGACTTTGGAGCCTTCAATGACCTCTGTGGAACTTAAG : GTCCTTCTGAATTCTATTATGATGGAGATGATTTGACACATGCAATCTCATGGTGAAGAGATTCTTAAGAATTATTTGATACCACGAGCTATGCTCTCCTCTAGG</gDNA_template>
            <first_frame> V  R  C  T  E  A  *  Y  M  M  D  H  L  C  L  F  Q  I   : M  G  S  G  V  I  *  V  P  L  T  N  *  M  Q  V  M  V  H  I  N  S  Q  D  I  S  L  V  C  S  H  S  E   : G  L  S  I  F  L  Y  E  L  I  S  V  Y  F  P  E  Q  R  K  W  K  L  I  V  G  :  I  S  I  Q  D  L  F  P  K  D  Q  H  I  N  Y  L  I  T  *  R  *  V  L  V  V  L  L  T  L  S  S  E  I  D  L  R  F  F  F  E  T  V  T  T  K  *  I  S  D  L  S  T  V  F  F  E  P  E  L  L  K  I  F  T  *  F  D  F  G  A  F  N  D  L  C  G  T  *   : G  P  S  E  F  Y  Y  D  G  D  D  L  T  H  A  I  S  W  *  R  D  S  *  E  L  F  D  T  T  S  Y  A  L  L  *  </first_frame>
            <second_frame>  F  V  A  Q  K  P  D  T  *  W  I  I  F  V  Y  S  R  *  :  W  V  R  V  S  S  E  F  P  *  Q  I  E  C  K  *  W  F  I  *  T  L  R  I  Y  L  W  Y  V  H  T  V  K  :  V  F  Q  Y  F  C  M  N  L  F  Q  Y  I  F  L  N  K  E  N  G  N  *  S  L  G :   Y  Q  F  K  I  Y  F  Q  K  T  N  T  *  I  T  *  *  H  R  D  E  F  W  *  C  F  *  H  *  V  A  K  *  I  S  D  F  F  L  R  Q  *  Q  Q  N  R  S  Q  I  Y  P  L  C  F  L  N  L  N  C  S  R  S  L  H  D  L  T  L  E  P  S  M  T  S  V  E  L  K  :  V  L  L  N  S  I  M  M  E  M  I  *  H  M  Q  S  H  G  E  E  I  L  K  N  Y  L  I  P  R  A  M  L  S  S  R </second_frame>
            <third_frame>   S  L  H  R  S  L  I  H  D  G  S  S  L  F  I  P  D  N :   G  F  G  C  H  L  S  S  L  N  K  L  N  A  S  D  G  S  Y  K  L  S  G  Y  I  S  G  M  F  T  Q  *  R :   S  F  N  I  F  V  *  T  Y  F  S  I  F  S  *  T  K  K  M  E  T  N  R  W   : D  I  N  S  R  F  I  S  K  R  P  T  H  K  L  L  N  N  I  E  M  S  F  G  S  A  S  D  I  E  *  R  N  R  S  Q  I  F  F  *  D  S  N  N  K  I  D  L  R  F  I  H  C  V  F  *  T  *  T  A  Q  D  L  Y  M  I  *  L  W  S  L  Q  *  P  L  W  N  L  R :   S  F  *  I  L  L  *  W  R  *  F  D  T  C  N  L  M  V  K  R  F  L  R  I  I  *  Y  H  E  L  C  S  P  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0066K03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="52983" e_stop="52911"/>
            <exon e_start="51035" e_stop="50535"/>
            <exon e_start="50444" e_stop="50329"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.577" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.000" e_score="0.998"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52983" e_stop="52911" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="0.577" acc_prob="0.941">
            <gDNA_intron_boundary i_start="52910" i_stop="51036" i_length="1875"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="51035" e_stop="50535" e_length="501"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.000">
            <gDNA_intron_boundary i_start="50534" i_stop="50445" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50444" e_stop="50329" e_length="116"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52983" stop="52911"/>
              <exon start="51035" stop="50539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50995" stop="50535"/>
              <exon start="50444" stop="50329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253375" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTTCAATATTTTTGTATGAACTTATTTCAGTATATTTTCCTGAACAAAGAAAATGGAAACTAATCGTTGGG : AGGGTTATTTCCTGTTAAACATGAGGCTGCTGTCACATATGATTTTGGAAACATCGAACGTAATCTCTTGGTCCCTGCCATAAATAATTTGGAGAAAGAGGACTGCAAAGTGTGATCTCAATTTTATGCTCTTTCTAGTGAGAAGATGTCCAGAATAGAGGAACTTGTTACATGGGATGTTTATGGTTCAGGTCCTTCTGAATTCTATTATGATGGAGATGATTTGACACATGCAATCTCATGGTGAAGAGATTCTTAAGAATTATTTGATACCACGAGCTATGCTCTCCTCTAGGGTGGATGGTGACTTACATAAATGGATTGATGCTGGAAGTCGAGGTAAAACAGATGAGCTTATTAGGAAGAAGAAGAGTACAAAAAGTCATTCAGCTCCTCCATTTTACCAAGGCAAGAAGAAGTTCTTTGCCACGGCTGAGTCTTCAAGAAAGGCAGCAGGAAATAAGAATATTATGACTGTTCATGATGTGCCACTCATGCCAG : CTGTAAGGAGACTGCATCATTCTGTAGAAGCTATCTGCTTGGAGCTTCACGACAGTCATCCCATCAATGTGATCAATCTTCCACCCCAAGTTGCGGTGACAGTGAATTCTCTGATG</gDNA_template>
            <first_frame> S  F  N  I  F  V  *  T  Y  F  S  I  F  S  *  T  K  K  M  E  T  N  R  W   : E  G  Y  F  L  L  N  M  R  L  L  S  H  M  I  L  E  T  S  N  V  I  S  W  S  L  P  *  I  I  W  R  K  R  T  A  K  C  D  L  N  F  M  L  F  L  V  R  R  C  P  E  *  R  N  L  L  H  G  M  F  M  V  Q  V  L  L  N  S  I  M  M  E  M  I  *  H  M  Q  S  H  G  E  E  I  L  K  N  Y  L  I  P  R  A  M  L  S  S  R  V  D  G  D  L  H  K  W  I  D  A  G  S  R  G  K  T  D  E  L  I  R  K  K  K  S  T  K  S  H  S  A  P  P  F  Y  Q  G  K  K  K  F  F  A  T  A  E  S  S  R  K  A  A  G  N  K  N  I  M  T  V  H  D  V  P  L  M  P   : A  V  R  R  L  H  H  S  V  E  A  I  C  L  E  L  H  D  S  H  P  I  N  V  I  N  L  P  P  Q  V  A  V  T  V  N  S  L  M </first_frame>
            <second_frame>  L  S  I  F  L  Y  E  L  I  S  V  Y  F  P  E  Q  R  K  W  K  L  I  V  G  :  R  V  I  S  C  *  T  *  G  C  C  H  I  *  F  W  K  H  R  T  *  S  L  G  P  C  H  K  *  F  G  E  R  G  L  Q  S  V  I  S  I  L  C  S  F  *  *  E  D  V  Q  N  R  G  T  C  Y  M  G  C  L  W  F  R  S  F  *  I  L  L  *  W  R  *  F  D  T  C  N  L  M  V  K  R  F  L  R  I  I  *  Y  H  E  L  C  S  P  L  G  W  M  V  T  Y  I  N  G  L  M  L  E  V  E  V  K  Q  M  S  L  L  G  R  R  R  V  Q  K  V  I  Q  L  L  H  F  T  K  A  R  R  S  S  L  P  R  L  S  L  Q  E  R  Q  Q  E  I  R  I  L  *  L  F  M  M  C  H  S  C  Q  :  L  *  G  D  C  I  I  L  *  K  L  S  A  W  S  F  T  T  V  I  P  S  M  *  S  I  F  H  P  K  L  R  *  Q  *  I  L  *   </second_frame>
            <third_frame>   F  Q  Y  F  C  M  N  L  F  Q  Y  I  F  L  N  K  E  N  G  N  *  S  L  G :   G  L  F  P  V  K  H  E  A  A  V  T  Y  D  F  G  N  I  E  R  N  L  L  V  P  A  I  N  N  L  E  K  E  D  C  K  V  *  S  Q  F  Y  A  L  S  S  E  K  M  S  R  I  E  E  L  V  T  W  D  V  Y  G  S  G  P  S  E  F  Y  Y  D  G  D  D  L  T  H  A  I  S  W  *  R  D  S  *  E  L  F  D  T  T  S  Y  A  L  L  *  G  G  W  *  L  T  *  M  D  *  C  W  K  S  R  *  N  R  *  A  Y  *  E  E  E  E  Y  K  K  S  F  S  S  S  I  L  P  R  Q  E  E  V  L  C  H  G  *  V  F  K  K  G  S  R  K  *  E  Y  Y  D  C  S  *  C  A  T  H  A  S :   C  K  E  T  A  S  F  C  R  S  Y  L  L  G  A  S  R  Q  S  S  H  Q  C  D  Q  S  S  T  P  S  C  G  D  S  E  F  S  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0066K03.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50808" stop="50535"/>
                    <exon start="50444" stop="50329"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HMQSHGEEILKNYLIPRAMLSSRVDGDLHKWIDAGSRGKTDELIRKKKSTKSHSAPPFYQGKKKFFATAESSRKAAGNKNIMTVHDVPLMPAVRRLHHSVEAICLELHDSHPINVINLPPQVAVTVNSLM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="53272" e_stop="53093"/>
            <exon e_start="52984" e_stop="52911"/>
            <exon e_start="52807" e_stop="52573"/>
            <exon e_start="51035" e_stop="50535"/>
            <exon e_start="50444" e_stop="50329"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.668" e_score="1.000"/>
          <exon-intron don_prob="0.577" acc_prob="0.765" e_score="1.000"/>
          <exon-intron don_prob="0.599" acc_prob="0.941" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="53272" e_stop="53093" e_length="180"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.668">
            <gDNA_intron_boundary i_start="53092" i_stop="52985" i_length="108"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52984" e_stop="52911" e_length="74"/>
          </exon>
          <intron i_serial="2" don_prob="0.577" acc_prob="0.765">
            <gDNA_intron_boundary i_start="52910" i_stop="52808" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="52807" e_stop="52573" e_length="235"/>
          </exon>
          <intron i_serial="3" don_prob="0.599" acc_prob="0.941">
            <gDNA_intron_boundary i_start="52572" i_stop="51036" i_length="1537"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="51035" e_stop="50535" e_length="501"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.000">
            <gDNA_intron_boundary i_start="50534" i_stop="50445" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="50444" e_stop="50329" e_length="116"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53272" stop="53093"/>
              <exon start="52984" stop="52911"/>
              <exon start="52807" stop="52573"/>
              <exon start="51035" stop="50905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50995" stop="50535"/>
              <exon start="50444" stop="50329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253375" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCCTGTCTTATTCTCTTCAGATTTTGTTCATTTGCACGCAATGAAGATGACCTTCTTTGCACACGTGCTTGTCCTTCTCTGTTTCTGCTGTTGTCCAGTGGGTTCGGGTGTCATCTGAGTTCCCTTAACAAATTGAATGCAAGTGATGGTTCATATAAACTCTCAGGATATATCTCTG : GTCTTTCAATATTTTTGTATGAACTTATTTCAGTATATTTTCCTGAACAAAGAAAATGGAAACTAATCGTTGGG : ATATCAATTCAAGATTTATTTCCAAAAGACCAACACATAAATTACTTAATAACATAGAGATGAGTTTTGGTAGTGCTTCTGACATTGAGTAGCGAAATAGATCTCAGATTTTTTTTTGAGACAGTAACAACAAAATAGATCTCAGATTTATCCACTGTGTTTTTTGAACCTGAACTGCTCAAGATCTTTACATGATTTGACTTTGGAGCCTTCAATGACCTCTGTGGAACTTAAG : AGGGTTATTTCCTGTTAAACATGAGGCTGCTGTCACATATGATTTTGGAAACATCGAACGTAATCTCTTGGTCCCTGCCATAAATAATTTGGAGAAAGAGGACTGCAAAGTGTGATCTCAATTTTATGCTCTTTCTAGTGAGAAGATGTCCAGAATAGAGGAACTTGTTACATGGGATGTTTATGGTTCAGGTCCTTCTGAATTCTATTATGATGGAGATGATTTGACACATGCAATCTCATGGTGAAGAGATTCTTAAGAATTATTTGATACCACGAGCTATGCTCTCCTCTAGGGTGGATGGTGACTTACATAAATGGATTGATGCTGGAAGTCGAGGTAAAACAGATGAGCTTATTAGGAAGAAGAAGAGTACAAAAAGTCATTCAGCTCCTCCATTTTACCAAGGCAAGAAGAAGTTCTTTGCCACGGCTGAGTCTTCAAGAAAGGCAGCAGGAAATAAGAATATTATGACTGTTCATGATGTGCCACTCATGCCAG : CTGTAAGGAGACTGCATCATTCTGTAGAAGCTATCTGCTTGGAGCTTCACGACAGTCATCCCATCAATGTGATCAATCTTCCACCCCAAGTTGCGGTGACAGTGAATTCTCTGATG</gDNA_template>
            <first_frame> F  P  V  L  F  S  S  D  F  V  H  L  H  A  M  K  M  T  F  F  A  H  V  L  V  L  L  C  F  C  C  C  P  V  G  S  G  V  I  *  V  P  L  T  N  *  M  Q  V  M  V  H  I  N  S  Q  D  I  S  L  :  V  F  Q  Y  F  C  M  N  L  F  Q  Y  I  F  L  N  K  E  N  G  N  *  S  L  G :   Y  Q  F  K  I  Y  F  Q  K  T  N  T  *  I  T  *  *  H  R  D  E  F  W  *  C  F  *  H  *  V  A  K  *  I  S  D  F  F  L  R  Q  *  Q  Q  N  R  S  Q  I  Y  P  L  C  F  L  N  L  N  C  S  R  S  L  H  D  L  T  L  E  P  S  M  T  S  V  E  L  K  :  R  V  I  S  C  *  T  *  G  C  C  H  I  *  F  W  K  H  R  T  *  S  L  G  P  C  H  K  *  F  G  E  R  G  L  Q  S  V  I  S  I  L  C  S  F  *  *  E  D  V  Q  N  R  G  T  C  Y  M  G  C  L  W  F  R  S  F  *  I  L  L  *  W  R  *  F  D  T  C  N  L  M  V  K  R  F  L  R  I  I  *  Y  H  E  L  C  S  P  L  G  W  M  V  T  Y  I  N  G  L  M  L  E  V  E  V  K  Q  M  S  L  L  G  R  R  R  V  Q  K  V  I  Q  L  L  H  F  T  K  A  R  R  S  S  L  P  R  L  S  L  Q  E  R  Q  Q  E  I  R  I  L  *  L  F  M  M  C  H  S  C  Q  :  L  *  G  D  C  I  I  L  *  K  L  S  A  W  S  F  T  T  V  I  P  S  M  *  S  I  F  H  P  K  L  R  *  Q  *  I  L  *   </first_frame>
            <second_frame>  F  L  S  Y  S  L  Q  I  L  F  I  C  T  Q  *  R  *  P  S  L  H  T  C  L  S  F  S  V  S  A  V  V  Q  W  V  R  V  S  S  E  F  P  *  Q  I  E  C  K  *  W  F  I  *  T  L  R  I  Y  L  W :   S  F  N  I  F  V  *  T  Y  F  S  I  F  S  *  T  K  K  M  E  T  N  R  W   : D  I  N  S  R  F  I  S  K  R  P  T  H  K  L  L  N  N  I  E  M  S  F  G  S  A  S  D  I  E  *  R  N  R  S  Q  I  F  F  *  D  S  N  N  K  I  D  L  R  F  I  H  C  V  F  *  T  *  T  A  Q  D  L  Y  M  I  *  L  W  S  L  Q  *  P  L  W  N  L  R :   G  L  F  P  V  K  H  E  A  A  V  T  Y  D  F  G  N  I  E  R  N  L  L  V  P  A  I  N  N  L  E  K  E  D  C  K  V  *  S  Q  F  Y  A  L  S  S  E  K  M  S  R  I  E  E  L  V  T  W  D  V  Y  G  S  G  P  S  E  F  Y  Y  D  G  D  D  L  T  H  A  I  S  W  *  R  D  S  *  E  L  F  D  T  T  S  Y  A  L  L  *  G  G  W  *  L  T  *  M  D  *  C  W  K  S  R  *  N  R  *  A  Y  *  E  E  E  E  Y  K  K  S  F  S  S  S  I  L  P  R  Q  E  E  V  L  C  H  G  *  V  F  K  K  G  S  R  K  *  E  Y  Y  D  C  S  *  C  A  T  H  A  S :   C  K  E  T  A  S  F  C  R  S  Y  L  L  G  A  S  R  Q  S  S  H  Q  C  D  Q  S  S  T  P  S  C  G  D  S  E  F  S  D  </second_frame>
            <third_frame>   S  C  L  I  L  F  R  F  C  S  F  A  R  N  E  D  D  L  L  C  T  R  A  C  P  S  L  F  L  L  L  S  S  G  F  G  C  H  L  S  S  L  N  K  L  N  A  S  D  G  S  Y  K  L  S  G  Y  I  S   : G  L  S  I  F  L  Y  E  L  I  S  V  Y  F  P  E  Q  R  K  W  K  L  I  V  G  :  I  S  I  Q  D  L  F  P  K  D  Q  H  I  N  Y  L  I  T  *  R  *  V  L  V  V  L  L  T  L  S  S  E  I  D  L  R  F  F  F  E  T  V  T  T  K  *  I  S  D  L  S  T  V  F  F  E  P  E  L  L  K  I  F  T  *  F  D  F  G  A  F  N  D  L  C  G  T  *   : E  G  Y  F  L  L  N  M  R  L  L  S  H  M  I  L  E  T  S  N  V  I  S  W  S  L  P  *  I  I  W  R  K  R  T  A  K  C  D  L  N  F  M  L  F  L  V  R  R  C  P  E  *  R  N  L  L  H  G  M  F  M  V  Q  V  L  L  N  S  I  M  M  E  M  I  *  H  M  Q  S  H  G  E  E  I  L  K  N  Y  L  I  P  R  A  M  L  S  S  R  V  D  G  D  L  H  K  W  I  D  A  G  S  R  G  K  T  D  E  L  I  R  K  K  K  S  T  K  S  H  S  A  P  P  F  Y  Q  G  K  K  K  F  F  A  T  A  E  S  S  R  K  A  A  G  N  K  N  I  M  T  V  H  D  V  P  L  M  P   : A  V  R  R  L  H  H  S  V  E  A  I  C  L  E  L  H  D  S  H  P  I  N  V  I  N  L  P  P  Q  V  A  V  T  V  N  S  L  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0066K03.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50808" stop="50535"/>
                    <exon start="50444" stop="50329"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HMQSHGEEILKNYLIPRAMLSSRVDGDLHKWIDAGSRGKTDELIRKKKSTKSHSAPPFYQGKKKFFATAESSRKAAGNKNIMTVHDVPLMPAVRRLHHSVEAICLELHDSHPINVINLPPQVAVTVNSLM</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0066K03.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53270" stop="53093"/>
                    <exon start="52984" stop="52911"/>
                    <exon start="52807" stop="52751"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SCLILFRFCSFARNEDDLLCTRACPSLFLLLSSGFGCHLSSLNKLNASDGSYKLSGYISGLSIFLYELISVYFPEQRKWKLIVGISIQDLFPKDQHINYLIT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="59693" PGL_stop="61208"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59693" e_stop="60033"/>
            <exon e_start="60177" e_stop="61208"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59693" e_stop="60033" e_length="341"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="60034" i_stop="60176" i_length="143"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="60177" e_stop="61208" e_length="1032"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59693" stop="60033"/>
              <exon start="60177" stop="60329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59714" stop="60033"/>
              <exon start="60177" stop="60305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59719" stop="60033"/>
              <exon start="60177" stop="60330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59722" stop="60033"/>
              <exon start="60177" stop="60713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59722" stop="60033"/>
              <exon start="60177" stop="60662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59743" stop="60033"/>
              <exon start="60177" stop="60536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59746" stop="60033"/>
              <exon start="60177" stop="60527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59747" stop="60033"/>
              <exon start="60177" stop="60623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59751" stop="60033"/>
              <exon start="60177" stop="60400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59759" stop="60033"/>
              <exon start="60177" stop="60641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59767" stop="60033"/>
              <exon start="60177" stop="60247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59769" stop="60033"/>
              <exon start="60177" stop="60530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59769" stop="60033"/>
              <exon start="60177" stop="60391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59774" stop="60033"/>
              <exon start="60177" stop="60282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59776" stop="60033"/>
              <exon start="60177" stop="60452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59776" stop="60033"/>
              <exon start="60177" stop="60368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59776" stop="60033"/>
              <exon start="60177" stop="60333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59781" stop="60033"/>
              <exon start="60177" stop="60488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59781" stop="60033"/>
              <exon start="60177" stop="60392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59781" stop="60033"/>
              <exon start="60177" stop="60278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59782" stop="60033"/>
              <exon start="60177" stop="60601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59782" stop="60033"/>
              <exon start="60177" stop="60535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59783" stop="60033"/>
              <exon start="60177" stop="60326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59786" stop="60033"/>
              <exon start="60177" stop="60448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59786" stop="60033"/>
              <exon start="60177" stop="60405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59788" stop="60033"/>
              <exon start="60177" stop="60658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59788" stop="60033"/>
              <exon start="60177" stop="60638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59788" stop="60033"/>
              <exon start="60177" stop="60602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59788" stop="60033"/>
              <exon start="60177" stop="60598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59788" stop="60033"/>
              <exon start="60177" stop="60597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59788" stop="60033"/>
              <exon start="60177" stop="60545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59788" stop="60033"/>
              <exon start="60177" stop="60534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59788" stop="60033"/>
              <exon start="60177" stop="60520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59788" stop="60033"/>
              <exon start="60177" stop="60491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59788" stop="60033"/>
              <exon start="60177" stop="60483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59788" stop="60033"/>
              <exon start="60177" stop="60450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59788" stop="60033"/>
              <exon start="60177" stop="60433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59788" stop="60033"/>
              <exon start="60177" stop="60363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59788" stop="60023"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59789" stop="60033"/>
              <exon start="60177" stop="60710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59791" stop="60033"/>
              <exon start="60177" stop="60450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59792" stop="60033"/>
              <exon start="60177" stop="60450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59792" stop="60033"/>
              <exon start="60177" stop="60450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59792" stop="60033"/>
              <exon start="60177" stop="60441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59792" stop="60033"/>
              <exon start="60177" stop="60373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59792" stop="60033"/>
              <exon start="60177" stop="60269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59792" stop="60033"/>
              <exon start="60177" stop="60255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59793" stop="60033"/>
              <exon start="60177" stop="60629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59793" stop="60033"/>
              <exon start="60177" stop="60606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59793" stop="60033"/>
              <exon start="60177" stop="60534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59793" stop="60033"/>
              <exon start="60177" stop="60450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59794" stop="60033"/>
              <exon start="60177" stop="60498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59794" stop="60033"/>
              <exon start="60177" stop="60368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59795" stop="60033"/>
              <exon start="60177" stop="60367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59798" stop="60033"/>
              <exon start="60177" stop="60496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59798" stop="60033"/>
              <exon start="60177" stop="60488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59798" stop="60033"/>
              <exon start="60177" stop="60432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59798" stop="60033"/>
              <exon start="60177" stop="60402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59798" stop="60033"/>
              <exon start="60177" stop="60342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59799" stop="60033"/>
              <exon start="60177" stop="60589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59799" stop="60033"/>
              <exon start="60177" stop="60488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59800" stop="60033"/>
              <exon start="60177" stop="60662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59800" stop="60033"/>
              <exon start="60177" stop="60441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59800" stop="60033"/>
              <exon start="60177" stop="60392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59801" stop="60033"/>
              <exon start="60177" stop="60445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59802" stop="60033"/>
              <exon start="60177" stop="60488"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59803" stop="60033"/>
              <exon start="60177" stop="60244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59804" stop="60033"/>
              <exon start="60177" stop="60710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59804" stop="60033"/>
              <exon start="60177" stop="60662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322845" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59804" stop="60033"/>
              <exon start="60177" stop="60545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59804" stop="60033"/>
              <exon start="60177" stop="60487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59807" stop="60033"/>
              <exon start="60177" stop="60189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59813" stop="60033"/>
              <exon start="60177" stop="60603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59813" stop="60033"/>
              <exon start="60177" stop="60535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59814" stop="60033"/>
              <exon start="60177" stop="60370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59820" stop="60033"/>
              <exon start="60177" stop="60497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59826" stop="60033"/>
              <exon start="60177" stop="60563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59826" stop="60033"/>
              <exon start="60177" stop="60223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59840" stop="60033"/>
              <exon start="60177" stop="60621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59840" stop="60033"/>
              <exon start="60177" stop="60313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59844" stop="60033"/>
              <exon start="60177" stop="60535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59844" stop="60033"/>
              <exon start="60177" stop="60517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59849" stop="60033"/>
              <exon start="60177" stop="60524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59849" stop="60033"/>
              <exon start="60177" stop="60498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59849" stop="60033"/>
              <exon start="60177" stop="60452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281807" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59849" stop="60033"/>
              <exon start="60177" stop="60326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59885" stop="60033"/>
              <exon start="60177" stop="60450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59933" stop="60033"/>
              <exon start="60177" stop="60623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249282" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59969" stop="60033"/>
              <exon start="60177" stop="60533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59983" stop="60033"/>
              <exon start="60177" stop="60533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59989" stop="60033"/>
              <exon start="60177" stop="60709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59996" stop="60033"/>
              <exon start="60177" stop="60716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60033" stop="60033"/>
              <exon start="60177" stop="60879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60249" stop="60702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60271" stop="60944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60282" stop="61032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60306" stop="60836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60336" stop="60901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60338" stop="60875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60477" stop="61060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60478" stop="61011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60504" stop="61015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60521" stop="61045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60539" stop="60883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60549" stop="61060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60619" stop="61050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292305" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60693" stop="61074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217740" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60696" stop="61082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219397" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60698" stop="61050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217594" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60704" stop="61042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60788" stop="61097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60788" stop="61093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60827" stop="61208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225724" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTTCTGCAATCTGACCATCCAACTGTCACACTTGTTAGTTTCTAATAAACAGAAACAAACAGCAGCAGAGAACTGATCAGAAAAACAAAAACAAAATGGCAGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCAACTAAGGTTGGTGGTGTCTCTGCCAGAAACAACTTGCCATTGAGGTCAGCTCAAAGTTTGAGCAAGGCATTTGGTCTTGAACCATCTGCATCCAAGCTTTCTTGCTCTTTGCAAGCTGATCTTAAAGATTTTGCTCAGAAATGCACTGATGCTGCCAAGATTGCAGGATTTGCCCTTGCCACTTCTGCCCTTGTTGTCTCA : GGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGACCCAAAAGGCAGGGGTGGATCCACTGGTTACGACAATGCTGTTGCATTGCCAGCTGGAGGCAGAGGAGATGAGGAGGAGCTCCAGAAAGAGAACGTAAAGAATACCGCGTCTTTAACAGGAAAGATCACATTTACTGTTACCAAGAGCAACCCACAGACTGGTGAGGTGATTGGAGTGTTTGAGAGCATTCAGCCATCTGATACTGATCTGGGGGCAAAGACTCCTAAGGATGTAAAAATCCAGGGTATCTGGTATGCCCAGCTTGAATCATAGACAGATCTTAGACTTTGTGGATCATTTCTTCGTTTTTGATTTTGTTATAAGTTACTACAAGGTTTCAACTTTCTATGACCCAATTGGATAAGTAATGAGACAACTATCTTCCTGTATATTATCAAGTATAAGTAATAATCCATTAACATACTGAGTTGCAAAATGCTGATATGTACTTAGATTTGCTAAGCGTTCCATCTCAAGAAAGTAAAAAGTTGTATGCTTGCCTAGACTCTGATATAATCGTCGAATCTGTCTCTGTATTTGGCAGCG</gDNA_template>
            <first_frame> L  F  L  Q  S  D  H  P  T  V  T  L  V  S  F  *  *  T  E  T  N  S  S  R  E  L  I  R  K  T  K  T  K  W  Q  P  L  Y  K  Q  L  L  L  L  C  N  Q  L  R  L  V  V  S  L  P  E  T  T  C  H  *  G  Q  L  K  V  *  A  R  H  L  V  L  N  H  L  H  P  S  F  L  A  L  C  K  L  I  L  K  I  L  L  R  N  A  L  M  L  P  R  L  Q  D  L  P  L  P  L  L  P  L  L  S  Q :   E  L  M  L  K  E  F  Q  N  V  *  P  L  M  R  S  R  A  R  H  T  W  K  *  R  E  L  E  Q  Q  T  S  A  L  P  *  M  E  V  L  I  A  F  P  S  S  Q  A  N  T  T  P  R  S  S  A  *  S  Q  H  H  S  P  S  R  Q  R  A  *  A  K  I  Q  P  Q  T  S  K  R  P  S  L  *  L  A  *  P  T  L  W  M  R  L  R  D  R  L  K  Y  L  L  M  A  L  L  N  L  R  R  R  M  E  L  I  T  L  L  L  L  S  S  F  L  V  V  S  V  F  R  S  S  S  P  S  N  N  L  W  H  L  E  S  L  R  A  S  V  A  T  S  L  C  H  P  T  E  V  H  R  F  L  T  Q  K  A  G  V  D  P  L  V  T  T  M  L  L  H  C  Q  L  E  A  E  E  M  R  R  S  S  R  K  R  T  *  R  I  P  R  L  *  Q  E  R  S  H  L  L  L  P  R  A  T  H  R  L  V  R  *  L  E  C  L  R  A  F  S  H  L  I  L  I  W  G  Q  R  L  L  R  M  *  K  S  R  V  S  G  M  P  S  L  N  H  R  Q  I  L  D  F  V  D  H  F  F  V  F  D  F  V  I  S  Y  Y  K  V  S  T  F  Y  D  P  I  G  *  V  M  R  Q  L  S  S  C  I  L  S  S  I  S  N  N  P  L  T  Y  *  V  A  K  C  *  Y  V  L  R  F  A  K  R  S  I  S  R  K  *  K  V  V  C  L  P  R  L  *  Y  N  R  R  I  C  L  C  I  W  Q   </first_frame>
            <second_frame>  Y  F  C  N  L  T  I  Q  L  S  H  L  L  V  S  N  K  Q  K  Q  T  A  A  E  N  *  S  E  K  Q  K  Q  N  G  S  L  S  T  S  S  C  Y  S  Y  A  T  N  *  G  W  W  C  L  C  Q  K  Q  L  A  I  E  V  S  S  K  F  E  Q  G  I  W  S  *  T  I  C  I  Q  A  F  L  L  F  A  S  *  S  *  R  F  C  S  E  M  H  *  C  C  Q  D  C  R  I  C  P  C  H  F  C  P  C  C  L   : R  S  *  C  *  R  S  S  K  T  S  N  L  *  *  D  P  E  Q  D  I  H  G  S  K  G  N  W  N  S  K  P  V  P  Y  H  R  W  R  C  *  *  L  F  L  Q  A  R  Q  I  Q  R  Q  E  V  L  L  R  A  N  I  I  H  R  Q  G  R  G  R  K  Q  K  F  S  P  R  L  P  K  D  Q  A  Y  D  S  L  N  L  H  F  G  *  D  *  G  T  V  *  S  I  S  *  W  H  C  *  I  *  G  E  G  W  N  *  L  R  C  C  Y  C  P  A  S  W  W  *  A  C  S  V  P  L  H  H  Q  T  T  C  G  I  W  K  A  *  E  L  Q  W  R  L  P  C  A  I  L  Q  R  F  I  V  S  *  P  K  R  Q  G  W  I  H  W  L  R  Q  C  C  C  I  A  S  W  R  Q  R  R  *  G  G  A  P  E  R  E  R  K  E  Y  R  V  F  N  R  K  D  H  I  Y  C  Y  Q  E  Q  P  T  D  W  *  G  D  W  S  V  *  E  H  S  A  I  *  Y  *  S  G  G  K  D  S  *  G  C  K  N  P  G  Y  L  V  C  P  A  *  I  I  D  R  S  *  T  L  W  I  I  S  S  F  L  I  L  L  *  V  T  T  R  F  Q  L  S  M  T  Q  L  D  K  *  *  D  N  Y  L  P  V  Y  Y  Q  V  *  V  I  I  H  *  H  T  E  L  Q  N  A  D  M  Y  L  D  L  L  S  V  P  S  Q  E  S  K  K  L  Y  A  C  L  D  S  D  I  I  V  E  S  V  S  V  F  G  S  </second_frame>
            <third_frame>   I  S  A  I  *  P  S  N  C  H  T  C  *  F  L  I  N  R  N  K  Q  Q  Q  R  T  D  Q  K  N  K  N  K  M  A  A  S  L  Q  A  A  A  T  L  M  Q  P  T  K  V  G  G  V  S  A  R  N  N  L  P  L  R  S  A  Q  S  L  S  K  A  F  G  L  E  P  S  A  S  K  L  S  C  S  L  Q  A  D  L  K  D  F  A  Q  K  C  T  D  A  A  K  I  A  G  F  A  L  A  T  S  A  L  V  V  S  :  G  A  N  A  E  G  V  P  K  R  L  T  F  D  E  I  Q  S  K  T  Y  M  E  V  K  G  T  G  T  A  N  Q  C  P  T  I  D  G  G  V  D  S  F  S  F  K  P  G  K  Y  N  A  K  K  F  C  L  E  P  T  S  F  T  V  K  A  E  G  V  S  K  N  S  A  P  D  F  Q  K  T  K  L  M  T  R  L  T  Y  T  L  D  E  I  E  G  P  F  E  V  S  P  D  G  T  V  K  F  E  E  K  D  G  I  D  Y  A  A  V  T  V  Q  L  P  G  G  E  R  V  P  F  L  F  T  I  K  Q  L  V  A  S  G  K  P  E  S  F  S  G  D  F  L  V  P  S  Y  R  G  S  S  F  L  D  P  K  G  R  G  G  S  T  G  Y  D  N  A  V  A  L  P  A  G  G  R  G  D  E  E  E  L  Q  K  E  N  V  K  N  T  A  S  L  T  G  K  I  T  F  T  V  T  K  S  N  P  Q  T  G  E  V  I  G  V  F  E  S  I  Q  P  S  D  T  D  L  G  A  K  T  P  K  D  V  K  I  Q  G  I  W  Y  A  Q  L  E  S  *  T  D  L  R  L  C  G  S  F  L  R  F  *  F  C  Y  K  L  L  Q  G  F  N  F  L  *  P  N  W  I  S  N  E  T  T  I  F  L  Y  I  I  K  Y  K  *  *  S  I  N  I  L  S  C  K  M  L  I  C  T  *  I  C  *  A  F  H  L  K  K  V  K  S  C  M  L  A  *  T  L  I  *  S  S  N  L  S  L  Y  L  A  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0066K03.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59734" stop="60033"/>
                    <exon start="60177" stop="60935"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1056</number_coding_nucleotides>
                  <number_encoded_amino_acids>352</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLINRNKQQQRTDQKNKNKMAASLQAAATLMQPTKVGGVSARNNLPLRSAQSLSKAFGLEPSASKLSCSLQADLKDFAQKCTDAAKIAGFALATSALVVSGANAEGVPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVDSFSFKPGKYNAKKFCLEPTSFTVKAEGVSKNSAPDFQKTKLMTRLTYTLDEIEGPFEVSPDGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPESFSGDFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELQKENVKNTASLTGKITFTVTKSNPQTGEVIGVFESIQPSDTDLGAKTPKDVKIQGIWYAQLES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="60089" e_stop="61208"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="60089" e_stop="61208" e_length="1120"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60089" stop="60608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60249" stop="60702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60271" stop="60944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60282" stop="61032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60306" stop="60836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60336" stop="60901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60338" stop="60875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60477" stop="61060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60478" stop="61011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60504" stop="61015"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60521" stop="61045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60539" stop="60883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60549" stop="61060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60619" stop="61050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292305" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60693" stop="61074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217740" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60696" stop="61082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219397" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60698" stop="61050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217594" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60704" stop="61042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60788" stop="61097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60788" stop="61093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60827" stop="61208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225724" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTATAGTTCATGTTCCTTTAGTTTTGTGTCCCTTTTTCTTTTGATGTCCTGTGTCTAAGAGAGAAATTTGCAACTTAATCATGTAGGGAGCTAATGCTGAAGGAGTTCCAAAACGTCTAACCTTTGATGAGATCCAGAGCAAGACATACATGGAAGTAAAGGGAACTGGAACAGCAAACCAGTGCCCTACCATAGATGGAGGTGTTGATAGCTTTTCCTTCAAGCCAGGCAAATACAACGCCAAGAAGTTCTGCTTAGAGCCAACATCATTCACCGTCAAGGCAGAGGGCGTAAGCAAAAATTCAGCCCCAGACTTCCAAAAGACCAAGCTTATGACTCGCTTAACCTACACTTTGGATGAGATTGAGGGACCGTTTGAAGTATCTCCTGATGGCACTGTTAAATTTGAGGAGAAGGATGGAATTGATTACGCTGCTGTTACTGTCCAGCTTCCTGGTGGTGAGCGTGTTCCGTTCCTCTTCACCATCAAACAACTTGTGGCATCTGGAAAGCCTGAGAGCTTCAGTGGCGACTTCCTTGTGCCATCCTACAGAGGTTCATCGTTTCTTGACCCAAAAGGCAGGGGTGGATCCACTGGTTACGACAATGCTGTTGCATTGCCAGCTGGAGGCAGAGGAGATGAGGAGGAGCTCCAGAAAGAGAACGTAAAGAATACCGCGTCTTTAACAGGAAAGATCACATTTACTGTTACCAAGAGCAACCCACAGACTGGTGAGGTGATTGGAGTGTTTGAGAGCATTCAGCCATCTGATACTGATCTGGGGGCAAAGACTCCTAAGGATGTAAAAATCCAGGGTATCTGGTATGCCCAGCTTGAATCATAGACAGATCTTAGACTTTGTGGATCATTTCTTCGTTTTTGATTTTGTTATAAGTTACTACAAGGTTTCAACTTTCTATGACCCAATTGGATAAGTAATGAGACAACTATCTTCCTGTATATTATCAAGTATAAGTAATAATCCATTAACATACTGAGTTGCAAAATGCTGATATGTACTTAGATTTGCTAAGCGTTCCATCTCAAGAAAGTAAAAAGTTGTATGCTTGCCTAGACTCTGATATAATCGTCGAATCTGTCTCTGTATTTGGCAGCG</gDNA_template>
            <first_frame> I  Y  S  S  C  S  F  S  F  V  S  L  F  L  L  M  S  C  V  *  E  R  N  L  Q  L  N  H  V  G  S  *  C  *  R  S  S  K  T  S  N  L  *  *  D  P  E  Q  D  I  H  G  S  K  G  N  W  N  S  K  P  V  P  Y  H  R  W  R  C  *  *  L  F  L  Q  A  R  Q  I  Q  R  Q  E  V  L  L  R  A  N  I  I  H  R  Q  G  R  G  R  K  Q  K  F  S  P  R  L  P  K  D  Q  A  Y  D  S  L  N  L  H  F  G  *  D  *  G  T  V  *  S  I  S  *  W  H  C  *  I  *  G  E  G  W  N  *  L  R  C  C  Y  C  P  A  S  W  W  *  A  C  S  V  P  L  H  H  Q  T  T  C  G  I  W  K  A  *  E  L  Q  W  R  L  P  C  A  I  L  Q  R  F  I  V  S  *  P  K  R  Q  G  W  I  H  W  L  R  Q  C  C  C  I  A  S  W  R  Q  R  R  *  G  G  A  P  E  R  E  R  K  E  Y  R  V  F  N  R  K  D  H  I  Y  C  Y  Q  E  Q  P  T  D  W  *  G  D  W  S  V  *  E  H  S  A  I  *  Y  *  S  G  G  K  D  S  *  G  C  K  N  P  G  Y  L  V  C  P  A  *  I  I  D  R  S  *  T  L  W  I  I  S  S  F  L  I  L  L  *  V  T  T  R  F  Q  L  S  M  T  Q  L  D  K  *  *  D  N  Y  L  P  V  Y  Y  Q  V  *  V  I  I  H  *  H  T  E  L  Q  N  A  D  M  Y  L  D  L  L  S  V  P  S  Q  E  S  K  K  L  Y  A  C  L  D  S  D  I  I  V  E  S  V  S  V  F  G  S  </first_frame>
            <second_frame>  S  I  V  H  V  P  L  V  L  C  P  F  F  F  *  C  P  V  S  K  R  E  I  C  N  L  I  M  *  G  A  N  A  E  G  V  P  K  R  L  T  F  D  E  I  Q  S  K  T  Y  M  E  V  K  G  T  G  T  A  N  Q  C  P  T  I  D  G  G  V  D  S  F  S  F  K  P  G  K  Y  N  A  K  K  F  C  L  E  P  T  S  F  T  V  K  A  E  G  V  S  K  N  S  A  P  D  F  Q  K  T  K  L  M  T  R  L  T  Y  T  L  D  E  I  E  G  P  F  E  V  S  P  D  G  T  V  K  F  E  E  K  D  G  I  D  Y  A  A  V  T  V  Q  L  P  G  G  E  R  V  P  F  L  F  T  I  K  Q  L  V  A  S  G  K  P  E  S  F  S  G  D  F  L  V  P  S  Y  R  G  S  S  F  L  D  P  K  G  R  G  G  S  T  G  Y  D  N  A  V  A  L  P  A  G  G  R  G  D  E  E  E  L  Q  K  E  N  V  K  N  T  A  S  L  T  G  K  I  T  F  T  V  T  K  S  N  P  Q  T  G  E  V  I  G  V  F  E  S  I  Q  P  S  D  T  D  L  G  A  K  T  P  K  D  V  K  I  Q  G  I  W  Y  A  Q  L  E  S  *  T  D  L  R  L  C  G  S  F  L  R  F  *  F  C  Y  K  L  L  Q  G  F  N  F  L  *  P  N  W  I  S  N  E  T  T  I  F  L  Y  I  I  K  Y  K  *  *  S  I  N  I  L  S  C  K  M  L  I  C  T  *  I  C  *  A  F  H  L  K  K  V  K  S  C  M  L  A  *  T  L  I  *  S  S  N  L  S  L  Y  L  A  A </second_frame>
            <third_frame>   L  *  F  M  F  L  *  F  C  V  P  F  S  F  D  V  L  C  L  R  E  K  F  A  T  *  S  C  R  E  L  M  L  K  E  F  Q  N  V  *  P  L  M  R  S  R  A  R  H  T  W  K  *  R  E  L  E  Q  Q  T  S  A  L  P  *  M  E  V  L  I  A  F  P  S  S  Q  A  N  T  T  P  R  S  S  A  *  S  Q  H  H  S  P  S  R  Q  R  A  *  A  K  I  Q  P  Q  T  S  K  R  P  S  L  *  L  A  *  P  T  L  W  M  R  L  R  D  R  L  K  Y  L  L  M  A  L  L  N  L  R  R  R  M  E  L  I  T  L  L  L  L  S  S  F  L  V  V  S  V  F  R  S  S  S  P  S  N  N  L  W  H  L  E  S  L  R  A  S  V  A  T  S  L  C  H  P  T  E  V  H  R  F  L  T  Q  K  A  G  V  D  P  L  V  T  T  M  L  L  H  C  Q  L  E  A  E  E  M  R  R  S  S  R  K  R  T  *  R  I  P  R  L  *  Q  E  R  S  H  L  L  L  P  R  A  T  H  R  L  V  R  *  L  E  C  L  R  A  F  S  H  L  I  L  I  W  G  Q  R  L  L  R  M  *  K  S  R  V  S  G  M  P  S  L  N  H  R  Q  I  L  D  F  V  D  H  F  F  V  F  D  F  V  I  S  Y  Y  K  V  S  T  F  Y  D  P  I  G  *  V  M  R  Q  L  S  S  C  I  L  S  S  I  S  N  N  P  L  T  Y  *  V  A  K  C  *  Y  V  L  R  F  A  K  R  S  I  S  R  K  *  K  V  V  C  L  P  R  L  *  Y  N  R  R  I  C  L  C  I  W  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0066K03.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60177" stop="60935"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>756</number_coding_nucleotides>
                  <number_encoded_amino_acids>252</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GANAEGVPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVDSFSFKPGKYNAKKFCLEPTSFTVKAEGVSKNSAPDFQKTKLMTRLTYTLDEIEGPFEVSPDGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPESFSGDFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELQKENVKNTASLTGKITFTVTKSNPQTGEVIGVFESIQPSDTDLGAKTPKDVKIQGIWYAQLES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="61344" PGL_stop="60358"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61112" e_stop="60358"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="61112" e_stop="60358" e_length="755"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61112" stop="60614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229163" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61112" stop="60694"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61098" stop="60437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61082" stop="60740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61059" stop="60358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61058" stop="60740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296850" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTACATATCAGCATTTTGCAACTCAGTATGTTAATGGATTATTACTTATACTTGATAATATACAGGAAGATAGTTGTCTCATTACTTATCCAATTGGGTCATAGAAAGTTGAAACCTTGTAGTAACTTATAACAAAATCAAAAACGAAGAAATGATCCACAAAGTCTAAGATCTGTCTATGATTCAAGCTGGGCATACCAGATACCCTGGATTTTTACATCCTTAGGAGTCTTTGCCCCCAGATCAGTATCAGATGGCTGAATGCTCTCAAACACTCCAATCACCTCACCAGTCTGTGGGTTGCTCTTGGTAACAGTAAATGTGATCTTTCCTGTTAAAGACGCGGTATTCTTTACGTTCTCTTTCTGGAGCTCCTCCTCATCTCCTCTGCCTCCAGCTGGCAATGCAACAGCATTGTCGTAACCAGTGGATCCACCCCTGCCTTTTGGGTCAAGAAACGATGAACCTCTGTAGGATGGCACAAGGAAGTCGCCACTGAAGCTCTCAGGCTTTCCAGATGCCACAAGTTGTTTGATGGTGAAGAGGAACGGAACACGCTCACCACCAGGAAGCTGGACAGTAACAGCAGCGTAATCAATTCCATCCTTCTCCTCAAATTTAACAGTGCCATCAGGAGATACTTCAAACGGTCCCTCAATCTCATCCAAAGTGTAGGTTAAGCGAGTCATAAGCTTGGTCTTTTGGAAGTCTGGGGCTGAATTTTTGCTTACGCCCTCTGCCTTGACGGTGAATG</gDNA_template>
            <first_frame> S  T  Y  Q  H  F  A  T  Q  Y  V  N  G  L  L  L  I  L  D  N  I  Q  E  D  S  C  L  I  T  Y  P  I  G  S  *  K  V  E  T  L  *  *  L  I  T  K  S  K  T  K  K  *  S  T  K  S  K  I  C  L  *  F  K  L  G  I  P  D  T  L  D  F  Y  I  L  R  S  L  C  P  Q  I  S  I  R  W  L  N  A  L  K  H  S  N  H  L  T  S  L  W  V  A  L  G  N  S  K  C  D  L  S  C  *  R  R  G  I  L  Y  V  L  F  L  E  L  L  L  I  S  S  A  S  S  W  Q  C  N  S  I  V  V  T  S  G  S  T  P  A  F  W  V  K  K  R  *  T  S  V  G  W  H  K  E  V  A  T  E  A  L  R  L  S  R  C  H  K  L  F  D  G  E  E  E  R  N  T  L  T  T  R  K  L  D  S  N  S  S  V  I  N  S  I  L  L  L  K  F  N  S  A  I  R  R  Y  F  K  R  S  L  N  L  I  Q  S  V  G  *  A  S  H  K  L  G  L  L  E  V  W  G  *  I  F  A  Y  A  L  C  L  D  G  E   </first_frame>
            <second_frame>  V  H  I  S  I  L  Q  L  S  M  L  M  D  Y  Y  L  Y  L  I  I  Y  R  K  I  V  V  S  L  L  I  Q  L  G  H  R  K  L  K  P  C  S  N  L  *  Q  N  Q  K  R  R  N  D  P  Q  S  L  R  S  V  Y  D  S  S  W  A  Y  Q  I  P  W  I  F  T  S  L  G  V  F  A  P  R  S  V  S  D  G  *  M  L  S  N  T  P  I  T  S  P  V  C  G  L  L  L  V  T  V  N  V  I  F  P  V  K  D  A  V  F  F  T  F  S  F  W  S  S  S  S  S  P  L  P  P  A  G  N  A  T  A  L  S  *  P  V  D  P  P  L  P  F  G  S  R  N  D  E  P  L  *  D  G  T  R  K  S  P  L  K  L  S  G  F  P  D  A  T  S  C  L  M  V  K  R  N  G  T  R  S  P  P  G  S  W  T  V  T  A  A  *  S  I  P  S  F  S  S  N  L  T  V  P  S  G  D  T  S  N  G  P  S  I  S  S  K  V  *  V  K  R  V  I  S  L  V  F  W  K  S  G  A  E  F  L  L  T  P  S  A  L  T  V  N  </second_frame>
            <third_frame>   Y  I  S  A  F  C  N  S  V  C  *  W  I  I  T  Y  T  *  *  Y  T  G  R  *  L  S  H  Y  L  S  N  W  V  I  E  S  *  N  L  V  V  T  Y  N  K  I  K  N  E  E  M  I  H  K  V  *  D  L  S  M  I  Q  A  G  H  T  R  Y  P  G  F  L  H  P  *  E  S  L  P  P  D  Q  Y  Q  M  A  E  C  S  Q  T  L  Q  S  P  H  Q  S  V  G  C  S  W  *  Q  *  M  *  S  F  L  L  K  T  R  Y  S  L  R  S  L  S  G  A  P  P  H  L  L  C  L  Q  L  A  M  Q  Q  H  C  R  N  Q  W  I  H  P  C  L  L  G  Q  E  T  M  N  L  C  R  M  A  Q  G  S  R  H  *  S  S  Q  A  F  Q  M  P  Q  V  V  *  W  *  R  G  T  E  H  A  H  H  Q  E  A  G  Q  *  Q  Q  R  N  Q  F  H  P  S  P  Q  I  *  Q  C  H  Q  E  I  L  Q  T  V  P  Q  S  H  P  K  C  R  L  S  E  S  *  A  W  S  F  G  S  L  G  L  N  F  C  L  R  P  L  P  *  R  *  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0066K03.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60647" stop="60432"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSVGWHKEVATEALRLSRCHKLFDGEEERNTLTTRKLDSNSSVINSILLLKFNSAIRRYFKRSLNLIQSVG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="61344" e_stop="61319"/>
            <exon e_start="61258" e_stop="61254"/>
            <exon e_start="61046" e_stop="60757"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.745" acc_prob="0.935" e_score="0.500"/>
          <exon-intron don_prob="0.821" acc_prob="0.876" e_score="0.400"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.500">
            <gDNA_exon_boundary e_start="61344" e_stop="61319" e_length="26"/>
          </exon>
          <intron i_serial="1" don_prob="0.745" acc_prob="0.935">
            <gDNA_intron_boundary i_start="61318" i_stop="61259" i_length="60"/>
          </intron>
          <exon e_serial="2" e_score="0.400">
            <gDNA_exon_boundary e_start="61258" e_stop="61254" e_length="5"/>
          </exon>
          <intron i_serial="2" don_prob="0.821" acc_prob="0.876">
            <gDNA_intron_boundary i_start="61253" i_stop="61047" i_length="207"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="61046" e_stop="60757" e_length="290"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61344" stop="61319"/>
              <exon start="61258" stop="61254"/>
              <exon start="61046" stop="60757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277227" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGTCAATTGTCAGATTGGTACTTG : GATGG : GAAGATAGTTGTCTCATTACTTATCCAATTGGGTCATAGAAAGTTGAAACCTTGTAGTAACTTATAACAAAATCAAAAACGAAGAAATGATCCACAAAGTCTAAGATCTGTCTATGATTCAAGCTGGGCATACCAGATACCCTGGATTTTTACATCCTTAGGAGTCTTTGCCCCCAGATCAGTATCAGATGGCTGAATGCTCTCAAACACTCCAATCACCTCACCAGTCTGTGGGTTGCTCTTGGTAACAGTAAATGTGATCTTTCCTGTTAAAGACGCGGTATTCTTTA</gDNA_template>
            <first_frame> F  V  N  C  Q  I  G  T  W :   M   : G  R  *  L  S  H  Y  L  S  N  W  V  I  E  S  *  N  L  V  V  T  Y  N  K  I  K  N  E  E  M  I  H  K  V  *  D  L  S  M  I  Q  A  G  H  T  R  Y  P  G  F  L  H  P  *  E  S  L  P  P  D  Q  Y  Q  M  A  E  C  S  Q  T  L  Q  S  P  H  Q  S  V  G  C  S  W  *  Q  *  M  *  S  F  L  L  K  T  R  Y  S  L </first_frame>
            <second_frame>  L  S  I  V  R  L  V  L   : G  W  :  E  D  S  C  L  I  T  Y  P  I  G  S  *  K  V  E  T  L  *  *  L  I  T  K  S  K  T  K  K  *  S  T  K  S  K  I  C  L  *  F  K  L  G  I  P  D  T  L  D  F  Y  I  L  R  S  L  C  P  Q  I  S  I  R  W  L  N  A  L  K  H  S  N  H  L  T  S  L  W  V  A  L  G  N  S  K  C  D  L  S  C  *  R  R  G  I  L   </second_frame>
            <third_frame>   C  Q  L  S  D  W  Y  L  :  D  G :   K  I  V  V  S  L  L  I  Q  L  G  H  R  K  L  K  P  C  S  N  L  *  Q  N  Q  K  R  R  N  D  P  Q  S  L  R  S  V  Y  D  S  S  W  A  Y  Q  I  P  W  I  F  T  S  L  G  V  F  A  P  R  S  V  S  D  G  *  M  L  S  N  T  P  I  T  S  P  V  C  G  L  L  L  V  T  V  N  V  I  F  P  V  K  D  A  V  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0066K03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="65388" PGL_stop="62765"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65388" e_stop="65097"/>
            <exon e_start="64596" e_stop="64378"/>
            <exon e_start="63566" e_stop="63480"/>
            <exon e_start="63089" e_stop="62943"/>
            <exon e_start="62777" e_stop="62765"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.928" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.888" acc_prob="0.873" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65388" e_stop="65097" e_length="292"/>
          </exon>
          <intron i_serial="1" don_prob="0.928" acc_prob="0.983">
            <gDNA_intron_boundary i_start="65096" i_stop="64597" i_length="500"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64596" e_stop="64378" e_length="219"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.976">
            <gDNA_intron_boundary i_start="64377" i_stop="63567" i_length="811"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63566" e_stop="63480" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.888" acc_prob="0.873">
            <gDNA_intron_boundary i_start="63479" i_stop="63090" i_length="390"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="63089" e_stop="62943" e_length="147"/>
          </exon>
          <intron i_serial="4" don_prob="0.943" acc_prob="0.998">
            <gDNA_intron_boundary i_start="62942" i_stop="62778" i_length="165"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="62777" e_stop="62765" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65388" stop="65097"/>
              <exon start="64596" stop="64378"/>
              <exon start="63566" stop="63480"/>
              <exon start="63089" stop="62943"/>
              <exon start="62777" stop="62765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65387" stop="65097"/>
              <exon start="64596" stop="64482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291317" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCGTGGCTGAAACTGTAGAAAGCTTGTCTATTTCACTGTTTTTTTTTAATTAATTATACATTAATTCTGTAGTTTGTAGTTTGTTGAATGGGGAGTATTGCTGCATATTGTGGTGGATTGCTATGTTGTTCGGAGTTACGATCGAGCAATTCAAGGATAGTTTCGGGCTTATCGGTGTTGGAACAGGTGGATAAGGAGTTGACGAAGGGAGATGAAAGGGCTGCTTTGTCTCTTGTCAAGGATTTGCAGGGAAAACCTGGTGGCCTTCGGTGTTTTGGCGCTGCTAGACAG : GTACCACAGAGGCTGTATTCCTTAGATGAATTGAAGTTGAATGGAATAGAAGCCATATCTCTTCTGTCACCAGTTGATGCTACCCTTGGAGCAATTGAAAGAAATCTGCAAATTGCTGCTATATTAAGTGGTTCTGCAGCATGGTATGCGCTTGATTTGAGCCCACAACAGATCCTTTTTGTTTCTCTGGGGGTTCTGTTTCTGTGGACTCTGGACTTG : GTTTCTTTCAATGGAGGAGTTGGTACTTTGGTCCTTGACACAATTGGCCATACATTCAGTCAGAAGTACCATAACAGGGTTATTCAA : CATGAAGCTGGGCATTTCTTGATTGCCTACTTGCTGGGTATTCTTCCCAAGGGGTATACACTCACCAGTTTGGATGCTTTGAAGAAGGAAGGATCGTTGAACATCCAAGCAGGAACAGCCTTTGTGGACTTAGAATTTATTGAGGAA : GTAAATAGAGGAA</gDNA_template>
            <first_frame> L  V  A  E  T  V  E  S  L  S  I  S  L  F  F  F  N  *  L  Y  I  N  S  V  V  C  S  L  L  N  G  E  Y  C  C  I  L  W  W  I  A  M  L  F  G  V  T  I  E  Q  F  K  D  S  F  G  L  I  G  V  G  T  G  G  *  G  V  D  E  G  R  *  K  G  C  F  V  S  C  Q  G  F  A  G  K  T  W  W  P  S  V  F  W  R  C  *  T   : G  T  T  E  A  V  F  L  R  *  I  E  V  E  W  N  R  S  H  I  S  S  V  T  S  *  C  Y  P  W  S  N  *  K  K  S  A  N  C  C  Y  I  K  W  F  C  S  M  V  C  A  *  F  E  P  T  T  D  P  F  C  F  S  G  G  S  V  S  V  D  S  G  L   : G  F  F  Q  W  R  S  W  Y  F  G  P  *  H  N  W  P  Y  I  Q  S  E  V  P  *  Q  G  Y  S   : T  *  S  W  A  F  L  D  C  L  L  A  G  Y  S  S  Q  G  V  Y  T  H  Q  F  G  C  F  E  E  G  R  I  V  E  H  P  S  R  N  S  L  C  G  L  R  I  Y  *  G   : S  K  *  R   </first_frame>
            <second_frame>  S  W  L  K  L  *  K  A  C  L  F  H  C  F  F  L  I  N  Y  T  L  I  L  *  F  V  V  C  *  M  G  S  I  A  A  Y  C  G  G  L  L  C  C  S  E  L  R  S  S  N  S  R  I  V  S  G  L  S  V  L  E  Q  V  D  K  E  L  T  K  G  D  E  R  A  A  L  S  L  V  K  D  L  Q  G  K  P  G  G  L  R  C  F  G  A  A  R  Q  :  V  P  Q  R  L  Y  S  L  D  E  L  K  L  N  G  I  E  A  I  S  L  L  S  P  V  D  A  T  L  G  A  I  E  R  N  L  Q  I  A  A  I  L  S  G  S  A  A  W  Y  A  L  D  L  S  P  Q  Q  I  L  F  V  S  L  G  V  L  F  L  W  T  L  D  L  :  V  S  F  N  G  G  V  G  T  L  V  L  D  T  I  G  H  T  F  S  Q  K  Y  H  N  R  V  I  Q  :  H  E  A  G  H  F  L  I  A  Y  L  L  G  I  L  P  K  G  Y  T  L  T  S  L  D  A  L  K  K  E  G  S  L  N  I  Q  A  G  T  A  F  V  D  L  E  F  I  E  E  :  V  N  R  G  </second_frame>
            <third_frame>   R  G  *  N  C  R  K  L  V  Y  F  T  V  F  F  *  L  I  I  H  *  F  C  S  L  *  F  V  E  W  G  V  L  L  H  I  V  V  D  C  Y  V  V  R  S  Y  D  R  A  I  Q  G  *  F  R  A  Y  R  C  W  N  R  W  I  R  S  *  R  R  E  M  K  G  L  L  C  L  L  S  R  I  C  R  E  N  L  V  A  F  G  V  L  A  L  L  D  R :   Y  H  R  G  C  I  P  *  M  N  *  S  *  M  E  *  K  P  Y  L  F  C  H  Q  L  M  L  P  L  E  Q  L  K  E  I  C  K  L  L  L  Y  *  V  V  L  Q  H  G  M  R  L  I  *  A  H  N  R  S  F  L  F  L  W  G  F  C  F  C  G  L  W  T  W :   F  L  S  M  E  E  L  V  L  W  S  L  T  Q  L  A  I  H  S  V  R  S  T  I  T  G  L  F  N :   M  K  L  G  I  S  *  L  P  T  C  W  V  F  F  P  R  G  I  H  S  P  V  W  M  L  *  R  R  K  D  R  *  T  S  K  Q  E  Q  P  L  W  T  *  N  L  L  R  K :   *  I  E  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0066K03.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65300" stop="65097"/>
                    <exon start="64596" stop="64378"/>
                    <exon start="63566" stop="63480"/>
                    <exon start="63089" stop="62943"/>
                    <exon start="62777" stop="62766"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGSIAAYCGGLLCCSELRSSNSRIVSGLSVLEQVDKELTKGDERAALSLVKDLQGKPGGLRCFGAARQVPQRLYSLDELKLNGIEAISLLSPVDATLGAIERNLQIAAILSGSAAWYALDLSPQQILFVSLGVLFLWTLDLVSFNGGVGTLVLDTIGHTFSQKYHNRVIQHEAGHFLIAYLLGILPKGYTLTSLDALKKEGSLNIQAGTAFVDLEFIEEVNRG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="68203" PGL_stop="70570"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68203" e_stop="68293"/>
            <exon e_start="70113" e_stop="70570"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.934" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68203" e_stop="68293" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.934">
            <gDNA_intron_boundary i_start="68294" i_stop="70112" i_length="1819"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="70113" e_stop="70570" e_length="458"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68203" stop="68293"/>
              <exon start="70113" stop="70570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68203" stop="68293"/>
              <exon start="70113" stop="70568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349895" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAATTTCTATCGGAAATTAGGGCAAATTCTTTGCTTAAGTCTTCGAGAGAAAGCATCCGAGGCTTCTCCCTCTTCTACTTGTGGGTTCAG : GTTATTTGCAATTGTCATGATTGATAAAAAAATTGACAGTAAAGATGTGGAAGCTCTACAGCAGAATGGAGATGAGAGTAGATCTCTTCAAATAAAGTTTCTGTTTTTCGCCCGTGCTAGAGATCTGACTGGCATGACTGAAATGCCATTGGAAGTTTCTTATGGTAGTACTGCCGGTGACTGCTTGAATAAGGTCATTTCTCACTTTCCACGGTTGGAAGAGATACGTGGGTGCATGCTTCTTGCCCGGAATGAGGAATACACAGCCGAATCCACCACTGTTAAAGATGGAGATGAATTGGCCATTATACCTCCTATTAGTGGAGGCTAACTCAGTTCCTGAACTGCAATTATCGGAACTCTATTTTACTTGTATTTATGTGTGTGATCATATTACTAAGCTGTGTTATTTATTCCCTAATAATACAAGAACAAAATTCTCTTGCTAAAATCATTGA</gDNA_template>
            <first_frame> L  I  S  I  G  N  *  G  K  F  F  A  *  V  F  E  R  K  H  P  R  L  L  P  L  L  L  V  G  S   : G  Y  L  Q  L  S  *  L  I  K  K  L  T  V  K  M  W  K  L  Y  S  R  M  E  M  R  V  D  L  F  K  *  S  F  C  F  S  P  V  L  E  I  *  L  A  *  L  K  C  H  W  K  F  L  M  V  V  L  P  V  T  A  *  I  R  S  F  L  T  F  H  G  W  K  R  Y  V  G  A  C  F  L  P  G  M  R  N  T  Q  P  N  P  P  L  L  K  M  E  M  N  W  P  L  Y  L  L  L  V  E  A  N  S  V  P  E  L  Q  L  S  E  L  Y  F  T  C  I  Y  V  C  D  H  I  T  K  L  C  Y  L  F  P  N  N  T  R  T  K  F  S  C  *  N  H  * </first_frame>
            <second_frame>  *  F  L  S  E  I  R  A  N  S  L  L  K  S  S  R  E  S  I  R  G  F  S  L  F  Y  L  W  V  Q  :  V  I  C  N  C  H  D  *  *  K  N  *  Q  *  R  C  G  S  S  T  A  E  W  R  *  E  *  I  S  S  N  K  V  S  V  F  R  P  C  *  R  S  D  W  H  D  *  N  A  I  G  S  F  L  W  *  Y  C  R  *  L  L  E  *  G  H  F  S  L  S  T  V  G  R  D  T  W  V  H  A  S  C  P  E  *  G  I  H  S  R  I  H  H  C  *  R  W  R  *  I  G  H  Y  T  S  Y  *  W  R  L  T  Q  F  L  N  C  N  Y  R  N  S  I  L  L  V  F  M  C  V  I  I  L  L  S  C  V  I  Y  S  L  I  I  Q  E  Q  N  S  L  A  K  I  I   </second_frame>
            <third_frame>   N  F  Y  R  K  L  G  Q  I  L  C  L  S  L  R  E  K  A  S  E  A  S  P  S  S  T  C  G  F  R :   L  F  A  I  V  M  I  D  K  K  I  D  S  K  D  V  E  A  L  Q  Q  N  G  D  E  S  R  S  L  Q  I  K  F  L  F  F  A  R  A  R  D  L  T  G  M  T  E  M  P  L  E  V  S  Y  G  S  T  A  G  D  C  L  N  K  V  I  S  H  F  P  R  L  E  E  I  R  G  C  M  L  L  A  R  N  E  E  Y  T  A  E  S  T  T  V  K  D  G  D  E  L  A  I  I  P  P  I  S  G  G  *  L  S  S  *  T  A  I  I  G  T  L  F  Y  L  Y  L  C  V  *  S  Y  Y  *  A  V  L  F  I  P  *  *  Y  K  N  K  I  L  L  L  K  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0066K03.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68205" stop="68293"/>
                    <exon start="70113" stop="70443"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFYRKLGQILCLSLREKASEASPSSTCGFRLFAIVMIDKKIDSKDVEALQQNGDESRSLQIKFLFFARARDLTGMTEMPLEVSYGSTAGDCLNKVISHFPRLEEIRGCMLLARNEEYTAESTTVKDGDELAIIPPISGG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="81731" PGL_stop="82352"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81731" e_stop="82352"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81731" e_stop="82352" e_length="622"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81731" stop="82352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270641" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAATCTACATCTATTGCTACAGCAAAATTGATACTACAAGACGGAAGATTACAAGAGTTTCCTTATCCAGTAAAGGCGTCTTACCTGTTACAGAAAGATCCGTCAATATTCATATGTAATTCCGATGAAATGGATTTCGGTGATGTCGTTTCCGCCATAAGCGCTGATGAAGAGCTTCAACCCGGTCAACTTTACTTTGCGTTGCCGTTAAGCAATCTGAAACGTAGGCTTAAGGCGGAGGAAATGGCAGCATTAGCTGTAAAAGCTAGTTCTGCATTGAACAATTGTGGCACTGAGAAATACGGTTGTCGCCGTAAAGGTTCAGATTTCTTAGTAGAAAAAAAGGGGAAAAGGAGAGATAATAACGATTCCGCCGCCGCTGCGGAATTGAGAAGAGCGAGGAGTAGTGGTGGTAGTGGGAGGAGAGGTAAGTTTACGGCGAGGTTAACTGCAATACCTGAGTAGATTTAACTTTTGGGGAAAATCAAACTGTTCATTTTAATAGTTTTTTTTACAATTTTGTGAATATAGTAGAAAATTAGTTGAGGTTAATATTCAAGATCTGCTCTCGGATTAGTGAGTAGTTCGAAATTCGGCATCAAACTTTTTTTTTAATTTTTT</gDNA_template>
            <first_frame> *  I  Y  I  Y  C  Y  S  K  I  D  T  T  R  R  K  I  T  R  V  S  L  S  S  K  G  V  L  P  V  T  E  R  S  V  N  I  H  M  *  F  R  *  N  G  F  R  *  C  R  F  R  H  K  R  *  *  R  A  S  T  R  S  T  L  L  C  V  A  V  K  Q  S  E  T  *  A  *  G  G  G  N  G  S  I  S  C  K  S  *  F  C  I  E  Q  L  W  H  *  E  I  R  L  S  P  *  R  F  R  F  L  S  R  K  K  G  E  K  E  R  *  *  R  F  R  R  R  C  G  I  E  K  S  E  E  *  W  W  *  W  E  E  R  *  V  Y  G  E  V  N  C  N  T  *  V  D  L  T  F  G  E  N  Q  T  V  H  F  N  S  F  F  Y  N  F  V  N  I  V  E  N  *  L  R  L  I  F  K  I  C  S  R  I  S  E  *  F  E  I  R  H  Q  T  F  F  L  I  F  </first_frame>
            <second_frame>  E  S  T  S  I  A  T  A  K  L  I  L  Q  D  G  R  L  Q  E  F  P  Y  P  V  K  A  S  Y  L  L  Q  K  D  P  S  I  F  I  C  N  S  D  E  M  D  F  G  D  V  V  S  A  I  S  A  D  E  E  L  Q  P  G  Q  L  Y  F  A  L  P  L  S  N  L  K  R  R  L  K  A  E  E  M  A  A  L  A  V  K  A  S  S  A  L  N  N  C  G  T  E  K  Y  G  C  R  R  K  G  S  D  F  L  V  E  K  K  G  K  R  R  D  N  N  D  S  A  A  A  A  E  L  R  R  A  R  S  S  G  G  S  G  R  R  G  K  F  T  A  R  L  T  A  I  P  E  *  I  *  L  L  G  K  I  K  L  F  I  L  I  V  F  F  T  I  L  *  I  *  *  K  I  S  *  G  *  Y  S  R  S  A  L  G  L  V  S  S  S  K  F  G  I  K  L  F  F  *  F  F </second_frame>
            <third_frame>   N  L  H  L  L  L  Q  Q  N  *  Y  Y  K  T  E  D  Y  K  S  F  L  I  Q  *  R  R  L  T  C  Y  R  K  I  R  Q  Y  S  Y  V  I  P  M  K  W  I  S  V  M  S  F  P  P  *  A  L  M  K  S  F  N  P  V  N  F  T  L  R  C  R  *  A  I  *  N  V  G  L  R  R  R  K  W  Q  H  *  L  *  K  L  V  L  H  *  T  I  V  A  L  R  N  T  V  V  A  V  K  V  Q  I  S  *  *  K  K  R  G  K  G  E  I  I  T  I  P  P  P  L  R  N  *  E  E  R  G  V  V  V  V  V  G  G  E  V  S  L  R  R  G  *  L  Q  Y  L  S  R  F  N  F  W  G  K  S  N  C  S  F  *  *  F  F  L  Q  F  C  E  Y  S  R  K  L  V  E  V  N  I  Q  D  L  L  S  D  *  *  V  V  R  N  S  A  S  N  F  F  F  N  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0066K03.2" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81732" stop="82196"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESTSIATAKLILQDGRLQEFPYPVKASYLLQKDPSIFICNSDEMDFGDVVSAISADEELQPGQLYFALPLSNLKRRLKAEEMAALAVKASSALNNCGTEKYGCRRKGSDFLVEKKGKRRDNNDSAAAAELRRARSSGGSGRRGKFTARLTAIPE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="87465" PGL_stop="87021"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87465" e_stop="87021"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="87465" e_stop="87021" e_length="445"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87465" stop="87021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281579" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCTGGCCTATGTCCTGCCGGTGTGTTAGAGATGATCCAGCAATCTTTGCCGGAATCTCTTAGAAAGAGCATTAAGAAGATTCCACAGGGAAAGGGCCGCAAGAACATTGAATGGATTCCTCATAATTTTGCTTTCCGGTATCTAATAATGAAGGACCTGGTGAAATGATGATGGTATGTTAAGATTAATCGAAGAATGTGGTTGTTTCTTTCTTTTTTTTCTTTGAAAGAAGTCTCAATTCTTTTTCCCATCACTTGTGTATACATGAATGGTAGTTTTCAGTTAGAATGGAGGATGATCAAAGTTCCTGTAATTGTGTCTTTGTGGAAGTGCCCCTCAATTCTTTGGCTATTTCTATTTGAGCAAAGCCTAGTTGTGTGCTCTAAGAAGAAGCAAATTCTGTGTTTCAGGCACGTATATAAATCTAAATCTCATCTCCATTG</gDNA_template>
            <first_frame> I  L  A  Y  V  L  P  V  C  *  R  *  S  S  N  L  C  R  N  L  L  E  R  A  L  R  R  F  H  R  E  R  A  A  R  T  L  N  G  F  L  I  I  L  L  S  G  I  *  *  *  R  T  W  *  N  D  D  G  M  L  R  L  I  E  E  C  G  C  F  F  L  F  F  L  *  K  K  S  Q  F  F  F  P  S  L  V  Y  T  *  M  V  V  F  S  *  N  G  G  *  S  K  F  L  *  L  C  L  C  G  S  A  P  Q  F  F  G  Y  F  Y  L  S  K  A  *  L  C  A  L  R  R  S  K  F  C  V  S  G  T  Y  I  N  L  N  L  I  S  I  </first_frame>
            <second_frame>  F  W  P  M  S  C  R  C  V  R  D  D  P  A  I  F  A  G  I  S  *  K  E  H  *  E  D  S  T  G  K  G  P  Q  E  H  *  M  D  S  S  *  F  C  F  P  V  S  N  N  E  G  P  G  E  M  M  M  V  C  *  D  *  S  K  N  V  V  V  S  F  F  F  F  F  E  R  S  L  N  S  F  S  H  H  L  C  I  H  E  W  *  F  S  V  R  M  E  D  D  Q  S  S  C  N  C  V  F  V  E  V  P  L  N  S  L  A  I  S  I  *  A  K  P  S  C  V  L  *  E  E  A  N  S  V  F  Q  A  R  I  *  I  *  I  S  S  P  L </second_frame>
            <third_frame>   S  G  L  C  P  A  G  V  L  E  M  I  Q  Q  S  L  P  E  S  L  R  K  S  I  K  K  I  P  Q  G  K  G  R  K  N  I  E  W  I  P  H  N  F  A  F  R  Y  L  I  M  K  D  L  V  K  *  *  W  Y  V  K  I  N  R  R  M  W  L  F  L  S  F  F  S  L  K  E  V  S  I  L  F  P  I  T  C  V  Y  M  N  G  S  F  Q  L  E  W  R  M  I  K  V  P  V  I  V  S  L  W  K  C  P  S  I  L  W  L  F  L  F  E  Q  S  L  V  V  C  S  K  K  K  Q  I  L  C  F  R  H  V  Y  K  S  K  S  H  L  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0066K03.2" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87292" stop="87023"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WYVKINRRMWLFLSFFSLKEVSILFPITCVYMNGSFQLEWRMIKVPVIVSLWKCPSILWLFLFEQSLVVCSKKKQILCFRHVYKSKSHLH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="89335" PGL_stop="88564"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89335" e_stop="89254"/>
            <exon e_start="89087" e_stop="88693"/>
            <exon e_start="88607" e_stop="88564"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.845" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.952" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89335" e_stop="89254" e_length="82"/>
          </exon>
          <intron i_serial="1" don_prob="0.845" acc_prob="0.931">
            <gDNA_intron_boundary i_start="89253" i_stop="89088" i_length="166"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="89087" e_stop="88693" e_length="395"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.952">
            <gDNA_intron_boundary i_start="88692" i_stop="88608" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88607" e_stop="88564" e_length="44"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89335" stop="89254"/>
              <exon start="89087" stop="88693"/>
              <exon start="88607" stop="88564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325241" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCGAGCAGAGCCTCCCCACCGGAAGAGACACTCGGCAAAACATTGCGTGCCTGTCATTCTCAACCGTTATCTATGATGGAG : TATGCACAAAATGCTTCTTCAAATGTAATCAGTTTGGCAGAGCATCTAGGCACCCGTATCTCTGATCACGTTCCTGATACACCAAACAAGCTGTCCGAGGATATGATAAAGTGCATGTGCACCATATATAGCAAGCTTGCTGATCCTCCACTGACAAATCCCGGTCTTTCATCGCCAACCTCATCCTTGTCTTCCATAAGTGCATTTTCCCCAAAAGACATATGGAGTCCAGGATTTAGGAATGATTCATCTTTTGATGTTCGGCTGGACAATCCTTTTCATGTAGAAGGGTTGAAGGAGTTCAGTGGACCTTACAGCACAATGATTGAAGTACAGTGTGTATATAGAGATACTCAGAAATTGGGCGATATTGAACCGATGTTACAGCACTTCAG : GTCACTTATTTCTCGCCTAGAACAAATTGATCCACGAAAGTTGA</gDNA_template>
            <first_frame> V  E  Q  S  L  P  T  G  R  D  T  R  Q  N  I  A  C  L  S  F  S  T  V  I  Y  D  G   : V  C  T  K  C  F  F  K  C  N  Q  F  G  R  A  S  R  H  P  Y  L  *  S  R  S  *  Y  T  K  Q  A  V  R  G  Y  D  K  V  H  V  H  H  I  *  Q  A  C  *  S  S  T  D  K  S  R  S  F  I  A  N  L  I  L  V  F  H  K  C  I  F  P  K  R  H  M  E  S  R  I  *  E  *  F  I  F  *  C  S  A  G  Q  S  F  S  C  R  R  V  E  G  V  Q  W  T  L  Q  H  N  D  *  S  T  V  C  I  *  R  Y  S  E  I  G  R  Y  *  T  D  V  T  A  L  Q  :  V  T  Y  F  S  P  R  T  N  *  S  T  K  V   </first_frame>
            <second_frame>  S  S  R  A  S  P  P  E  E  T  L  G  K  T  L  R  A  C  H  S  Q  P  L  S  M  M  E  :  Y  A  Q  N  A  S  S  N  V  I  S  L  A  E  H  L  G  T  R  I  S  D  H  V  P  D  T  P  N  K  L  S  E  D  M  I  K  C  M  C  T  I  Y  S  K  L  A  D  P  P  L  T  N  P  G  L  S  S  P  T  S  S  L  S  S  I  S  A  F  S  P  K  D  I  W  S  P  G  F  R  N  D  S  S  F  D  V  R  L  D  N  P  F  H  V  E  G  L  K  E  F  S  G  P  Y  S  T  M  I  E  V  Q  C  V  Y  R  D  T  Q  K  L  G  D  I  E  P  M  L  Q  H  F  R :   S  L  I  S  R  L  E  Q  I  D  P  R  K  L  </second_frame>
            <third_frame>   R  A  E  P  P  H  R  K  R  H  S  A  K  H  C  V  P  V  I  L  N  R  Y  L  *  W  S :   M  H  K  M  L  L  Q  M  *  S  V  W  Q  S  I  *  A  P  V  S  L  I  T  F  L  I  H  Q  T  S  C  P  R  I  *  *  S  A  C  A  P  Y  I  A  S  L  L  I  L  H  *  Q  I  P  V  F  H  R  Q  P  H  P  C  L  P  *  V  H  F  P  Q  K  T  Y  G  V  Q  D  L  G  M  I  H  L  L  M  F  G  W  T  I  L  F  M  *  K  G  *  R  S  S  V  D  L  T  A  Q  *  L  K  Y  S  V  Y  I  E  I  L  R  N  W  A  I  L  N  R  C  Y  S  T  S   : G  H  L  F  L  A  *  N  K  L  I  H  E  S  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0066K03.2" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89334" stop="89254"/>
                    <exon start="89087" stop="88693"/>
                    <exon start="88607" stop="88565"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSRASPPEETLGKTLRACHSQPLSMMEYAQNASSNVISLAEHLGTRISDHVPDTPNKLSEDMIKCMCTIYSKLADPPLTNPGLSSPTSSLSSISAFSPKDIWSPGFRNDSSFDVRLDNPFHVEGLKEFSGPYSTMIEVQCVYRDTQKLGDIEPMLQHFRSLISRLEQIDPRKL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="92162" PGL_stop="89464"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92162" e_stop="91886"/>
            <exon e_start="91787" e_stop="91709"/>
            <exon e_start="91213" e_stop="91141"/>
            <exon e_start="90866" e_stop="90783"/>
            <exon e_start="90693" e_stop="90577"/>
            <exon e_start="89676" e_stop="89464"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.424" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.885" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="92162" e_stop="91886" e_length="277"/>
          </exon>
          <intron i_serial="1" don_prob="0.424" acc_prob="0.000">
            <gDNA_intron_boundary i_start="91885" i_stop="91788" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="91787" e_stop="91709" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.885" acc_prob="0.997">
            <gDNA_intron_boundary i_start="91708" i_stop="91214" i_length="495"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91213" e_stop="91141" e_length="73"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="91140" i_stop="90867" i_length="274"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="90866" e_stop="90783" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.952" acc_prob="0.977">
            <gDNA_intron_boundary i_start="90782" i_stop="90694" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="90693" e_stop="90577" e_length="117"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="90576" i_stop="89677" i_length="900"/>
          </intron>
          <exon e_serial="6" e_score="0.981">
            <gDNA_exon_boundary e_start="89676" e_stop="89464" e_length="213"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92162" stop="91886"/>
              <exon start="91787" stop="91709"/>
              <exon start="91213" stop="91141"/>
              <exon start="90866" stop="90783"/>
              <exon start="90693" stop="90577"/>
              <exon start="89676" stop="89604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92148" stop="91992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281368" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92082" stop="91886"/>
              <exon start="91787" stop="91709"/>
              <exon start="91213" stop="91141"/>
              <exon start="90866" stop="90783"/>
              <exon start="90693" stop="90577"/>
              <exon start="89676" stop="89464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342542" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTCACCTTCCCCTCTATTGCACAAAGCTATATTGGGAATGTGGGAGTAACAGATTTTTGGAGCAAAAGTGAGCATCTGCTACTTACACTTTCAACTCCTGGTCAAAAGGAGGGCTGCCTTTTCTTGTCCATTTGAGACTTTATGCAAAGACAAGTTGGGGGTTTTATTTCAAGCTGAGGTTTTTGAGGCCTGTTTTGGGTCTTTAGGACCAGTGGGTCTGTTTCCATTTTCCAAATATTTGATCTTTGATAGTTACCTGTTTGAAGTATGTACTG : ATATGGATTTTGAAGGGTTTAGCACCAGTAAATTTCCAGAAAATAGAGTGACATCATCTAAACACACGCGTTCCAAGAG : CTTCCCAGTTAAACCAGAACAAGAGGAGAATATCGTGGATCATTCTGTAGAGACCTCTAATCGATTGAAGTTG : GATACGAGTCACGGGAATGACTGTAACGTGAGCGAGAAGAAACCATCATCCTCGGCTGAAATACAAAGTTCTCTGAGGCAAGAG : ATAATGCAGCTGGAGAGAAGATTACATGATCAAGTTGCAGTTCGATGTGCTCTTGAGAAAGCATTAGGTTATAAATCTTCTTCTCAAGATGTCAATGAAGTGACCGCAATGCCTAAG : CCAGCAACAGAACTGATCAGAGATATTGCAGTACTAGAATTGGAAGTTGGGCATTTGGAACAGTATCTTCTCTCACTATACAGGAAAGCATTTGATCAACAAGTCTCATCCTTATCTCCTCCCACAAAAGATGATAAACTAAAATCTCCTATAAGTACCCCAAGGAGGCGTCTTGATTTCTCCAATTCTGATGTGATATTGAAAAGGGAAAAA</gDNA_template>
            <first_frame> S  S  P  S  P  L  L  H  K  A  I  L  G  M  W  E  *  Q  I  F  G  A  K  V  S  I  C  Y  L  H  F  Q  L  L  V  K  R  R  A  A  F  S  C  P  F  E  T  L  C  K  D  K  L  G  V  L  F  Q  A  E  V  F  E  A  C  F  G  S  L  G  P  V  G  L  F  P  F  S  K  Y  L  I  F  D  S  Y  L  F  E  V  C  T   : D  M  D  F  E  G  F  S  T  S  K  F  P  E  N  R  V  T  S  S  K  H  T  R  S  K  S :   F  P  V  K  P  E  Q  E  E  N  I  V  D  H  S  V  E  T  S  N  R  L  K  L  :  D  T  S  H  G  N  D  C  N  V  S  E  K  K  P  S  S  S  A  E  I  Q  S  S  L  R  Q  E  :  I  M  Q  L  E  R  R  L  H  D  Q  V  A  V  R  C  A  L  E  K  A  L  G  Y  K  S  S  S  Q  D  V  N  E  V  T  A  M  P  K  :  P  A  T  E  L  I  R  D  I  A  V  L  E  L  E  V  G  H  L  E  Q  Y  L  L  S  L  Y  R  K  A  F  D  Q  Q  V  S  S  L  S  P  P  T  K  D  D  K  L  K  S  P  I  S  T  P  R  R  R  L  D  F  S  N  S  D  V  I  L  K  R  E  K </first_frame>
            <second_frame>  L  H  L  P  L  Y  C  T  K  L  Y  W  E  C  G  S  N  R  F  L  E  Q  K  *  A  S  A  T  Y  T  F  N  S  W  S  K  G  G  L  P  F  L  V  H  L  R  L  Y  A  K  T  S  W  G  F  Y  F  K  L  R  F  L  R  P  V  L  G  L  *  D  Q  W  V  C  F  H  F  P  N  I  *  S  L  I  V  T  C  L  K  Y  V  L  :  I  W  I  L  K  G  L  A  P  V  N  F  Q  K  I  E  *  H  H  L  N  T  R  V  P  R   : A  S  Q  L  N  Q  N  K  R  R  I  S  W  I  I  L  *  R  P  L  I  D  *  S  W :   I  R  V  T  G  M  T  V  T  *  A  R  R  N  H  H  P  R  L  K  Y  K  V  L  *  G  K  R :   *  C  S  W  R  E  D  Y  M  I  K  L  Q  F  D  V  L  L  R  K  H  *  V  I  N  L  L  L  K  M  S  M  K  *  P  Q  C  L  S :   Q  Q  Q  N  *  S  E  I  L  Q  Y  *  N  W  K  L  G  I  W  N  S  I  F  S  H  Y  T  G  K  H  L  I  N  K  S  H  P  Y  L  L  P  Q  K  M  I  N  *  N  L  L  *  V  P  Q  G  G  V  L  I  S  P  I  L  M  *  Y  *  K  G  K   </second_frame>
            <third_frame>   F  T  F  P  S  I  A  Q  S  Y  I  G  N  V  G  V  T  D  F  W  S  K  S  E  H  L  L  L  T  L  S  T  P  G  Q  K  E  G  C  L  F  L  S  I  *  D  F  M  Q  R  Q  V  G  G  F  I  S  S  *  G  F  *  G  L  F  W  V  F  R  T  S  G  S  V  S  I  F  Q  I  F  D  L  *  *  L  P  V  *  S  M  Y  * :   Y  G  F  *  R  V  *  H  Q  *  I  S  R  K  *  S  D  I  I  *  T  H  A  F  Q  E  :  L  P  S  *  T  R  T  R  G  E  Y  R  G  S  F  C  R  D  L  *  S  I  E  V   : G  Y  E  S  R  E  *  L  *  R  E  R  E  E  T  I  I  L  G  *  N  T  K  F  S  E  A  R   : D  N  A  A  G  E  K  I  T  *  S  S  C  S  S  M  C  S  *  E  S  I  R  L  *  I  F  F  S  R  C  Q  *  S  D  R  N  A  *   : A  S  N  R  T  D  Q  R  Y  C  S  T  R  I  G  S  W  A  F  G  T  V  S  S  L  T  I  Q  E  S  I  *  S  T  S  L  I  L  I  S  S  H  K  R  *  *  T  K  I  S  Y  K  Y  P  K  E  A  S  *  F  L  Q  F  *  C  D  I  E  K  G  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0066K03.2" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92111" stop="91886"/>
                    <exon start="91787" stop="91709"/>
                    <exon start="91213" stop="91141"/>
                    <exon start="90866" stop="90783"/>
                    <exon start="90693" stop="90577"/>
                    <exon start="89676" stop="89464"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIFGAKVSICYLHFQLLVKRRAAFSCPFETLCKDKLGVLFQAEVFEACFGSLGPVGLFPFSKYLIFDSYLFEVCTDMDFEGFSTSKFPENRVTSSKHTRSKSFPVKPEQEENIVDHSVETSNRLKLDTSHGNDCNVSEKKPSSSAEIQSSLRQEIMQLERRLHDQVAVRCALEKALGYKSSSQDVNEVTAMPKPATELIRDIAVLELEVGHLEQYLLSLYRKAFDQQVSSLSPPTKDDKLKSPISTPRRRLDFSNSDVILKREK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="107982" PGL_stop="114331"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107982" e_stop="108062"/>
            <exon e_start="111597" e_stop="111758"/>
            <exon e_start="112039" e_stop="112155"/>
            <exon e_start="112222" e_stop="112325"/>
            <exon e_start="112421" e_stop="112558"/>
            <exon e_start="113763" e_stop="113850"/>
            <exon e_start="114099" e_stop="114331"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.784" e_score="0.951"/>
          <exon-intron don_prob="1.000" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.874" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.879" acc_prob="0.990" e_score="0.981"/>
          <exon-intron don_prob="1.000" acc_prob="0.816" e_score="0.986"/>
          <exon-intron don_prob="0.959" acc_prob="0.467" e_score="0.980"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="107982" e_stop="108062" e_length="81"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.784">
            <gDNA_intron_boundary i_start="108063" i_stop="111596" i_length="3534"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111597" e_stop="111758" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.947">
            <gDNA_intron_boundary i_start="111759" i_stop="112038" i_length="280"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="112039" e_stop="112155" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.874" acc_prob="0.999">
            <gDNA_intron_boundary i_start="112156" i_stop="112221" i_length="66"/>
          </intron>
          <exon e_serial="4" e_score="0.981">
            <gDNA_exon_boundary e_start="112222" e_stop="112325" e_length="104"/>
          </exon>
          <intron i_serial="4" don_prob="0.879" acc_prob="0.990">
            <gDNA_intron_boundary i_start="112326" i_stop="112420" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="0.986">
            <gDNA_exon_boundary e_start="112421" e_stop="112558" e_length="138"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.816">
            <gDNA_intron_boundary i_start="112559" i_stop="113762" i_length="1204"/>
          </intron>
          <exon e_serial="6" e_score="0.980">
            <gDNA_exon_boundary e_start="113763" e_stop="113850" e_length="88"/>
          </exon>
          <intron i_serial="6" don_prob="0.959" acc_prob="0.467">
            <gDNA_intron_boundary i_start="113851" i_stop="114098" i_length="248"/>
          </intron>
          <exon e_serial="7" e_score="0.979">
            <gDNA_exon_boundary e_start="114099" e_stop="114331" e_length="233"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107982" stop="108062"/>
              <exon start="111597" stop="111758"/>
              <exon start="112039" stop="112155"/>
              <exon start="112222" stop="112277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107989" stop="108062"/>
              <exon start="111597" stop="111758"/>
              <exon start="112039" stop="112155"/>
              <exon start="112222" stop="112325"/>
              <exon start="112421" stop="112558"/>
              <exon start="113763" stop="113835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113801" stop="113850"/>
              <exon start="114099" stop="114331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378832" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAATCATTTTCGATGGAGTCTTGGATTCAGCACTGTCAGAATGCCGACAGTGCTGAGTCAATTGAAATGCTGAAGGAG : AGTTCCCAATTGGGGTGTGCTTGTCCAAATTCAGCATGCTCTTCTCAAACTTGTGATCATATTTACCTCTTTGATAATGATTACGATGATGCCAAAGATATTTATGGGAAGCCTATGCGTGGAAGGTTCCCATATGATGAGAGAGGTCGGATCATGTTGGAG : GAGGGCTACCTTATCTATGAATGCAATCAATGGTGCTCGTGCAGTAAATCTTGTCAGAATAGGGTTTTACAGAGTGGAGTGCGTGTGAAGCTAGAAATATACAAAACCGAGACAAGG : GGATGGGCAGTCAGGGCAAGAGAAGCAATCCTTCGTGGTACATTTGTGTGTGAATATGTAGGAGAGGTACTTGATGAGCAGGAAGCAAATAAGAGACGCAATAG : GTCTGCCACAGAAGGTTGTGGGTACTTCTTGGAGATAGATGCTCACATCAATGATATGAGCAGACTGATTGAAGGGCAGTCTCCATATGTAATTGATGCTACTAACTATGGAAACATTTCCCGTTATATCAACCACAG : TTGCTCACCAAATCTCGTGAATTACCAAGTTCTCGTGGAAAGCATGGATCATCAGCTTGCACATGTTGGTTTTTATGCAAGGCGAGAT : ATACTTGCAGGTGAAGAACTGACCTATAACTATAGATACAAACTATTGCCCGGAGAAGGGTCTCCATGCCTGTGTGGATCCTCTAATTGCAGGGGACGTCTTTACTAAATCCTCTACTTAATAGATTGTGCATTCAGAGGTTTATGAATTCAGATCTGTAGAGATTCGGAATCCCGAGGACTGGTGTGTTTGCAGGAAGCAAAAAGTTTGTAATTGTCCTTAGTTTATAGTTT</gDNA_template>
            <first_frame> K  K  S  F  S  M  E  S  W  I  Q  H  C  Q  N  A  D  S  A  E  S  I  E  M  L  K  E  :  S  S  Q  L  G  C  A  C  P  N  S  A  C  S  S  Q  T  C  D  H  I  Y  L  F  D  N  D  Y  D  D  A  K  D  I  Y  G  K  P  M  R  G  R  F  P  Y  D  E  R  G  R  I  M  L  E  :  E  G  Y  L  I  Y  E  C  N  Q  W  C  S  C  S  K  S  C  Q  N  R  V  L  Q  S  G  V  R  V  K  L  E  I  Y  K  T  E  T  R  :  G  W  A  V  R  A  R  E  A  I  L  R  G  T  F  V  C  E  Y  V  G  E  V  L  D  E  Q  E  A  N  K  R  R  N  R :   S  A  T  E  G  C  G  Y  F  L  E  I  D  A  H  I  N  D  M  S  R  L  I  E  G  Q  S  P  Y  V  I  D  A  T  N  Y  G  N  I  S  R  Y  I  N  H  S :   C  S  P  N  L  V  N  Y  Q  V  L  V  E  S  M  D  H  Q  L  A  H  V  G  F  Y  A  R  R  D  :  I  L  A  G  E  E  L  T  Y  N  Y  R  Y  K  L  L  P  G  E  G  S  P  C  L  C  G  S  S  N  C  R  G  R  L  Y  *  I  L  Y  L  I  D  C  A  F  R  G  L  *  I  Q  I  C  R  D  S  E  S  R  G  L  V  C  L  Q  E  A  K  S  L  *  L  S  L  V  Y  S   </first_frame>
            <second_frame>  K  N  H  F  R  W  S  L  G  F  S  T  V  R  M  P  T  V  L  S  Q  L  K  C  *  R  R :   V  P  N  W  G  V  L  V  Q  I  Q  H  A  L  L  K  L  V  I  I  F  T  S  L  I  M  I  T  M  M  P  K  I  F  M  G  S  L  C  V  E  G  S  H  M  M  R  E  V  G  S  C  W  R :   R  A  T  L  S  M  N  A  I  N  G  A  R  A  V  N  L  V  R  I  G  F  Y  R  V  E  C  V  *  S  *  K  Y  T  K  P  R  Q  G :   D  G  Q  S  G  Q  E  K  Q  S  F  V  V  H  L  C  V  N  M  *  E  R  Y  L  M  S  R  K  Q  I  R  D  A  I   : G  L  P  Q  K  V  V  G  T  S  W  R  *  M  L  T  S  M  I  *  A  D  *  L  K  G  S  L  H  M  *  L  M  L  L  T  M  E  T  F  P  V  I  S  T  T   : V  A  H  Q  I  S  *  I  T  K  F  S  W  K  A  W  I  I  S  L  H  M  L  V  F  M  Q  G  E  I :   Y  L  Q  V  K  N  *  P  I  T  I  D  T  N  Y  C  P  E  K  G  L  H  A  C  V  D  P  L  I  A  G  D  V  F  T  K  S  S  T  *  *  I  V  H  S  E  V  Y  E  F  R  S  V  E  I  R  N  P  E  D  W  C  V  C  R  K  Q  K  V  C  N  C  P  *  F  I  V  </second_frame>
            <third_frame>   K  I  I  F  D  G  V  L  D  S  A  L  S  E  C  R  Q  C  *  V  N  *  N  A  E  G   : E  F  P  I  G  V  C  L  S  K  F  S  M  L  F  S  N  L  *  S  Y  L  P  L  *  *  *  L  R  *  C  Q  R  Y  L  W  E  A  Y  A  W  K  V  P  I  *  *  E  R  S  D  H  V  G   : G  G  L  P  Y  L  *  M  Q  S  M  V  L  V  Q  *  I  L  S  E  *  G  F  T  E  W  S  A  C  E  A  R  N  I  Q  N  R  D  K   : G  M  G  S  Q  G  K  R  S  N  P  S  W  Y  I  C  V  *  I  C  R  R  G  T  *  *  A  G  S  K  *  E  T  Q  *  :  V  C  H  R  R  L  W  V  L  L  G  D  R  C  S  H  Q  *  Y  E  Q  T  D  *  R  A  V  S  I  C  N  *  C  Y  *  L  W  K  H  F  P  L  Y  Q  P  Q  :  L  L  T  K  S  R  E  L  P  S  S  R  G  K  H  G  S  S  A  C  T  C  W  F  L  C  K  A  R   : Y  T  C  R  *  R  T  D  L  *  L  *  I  Q  T  I  A  R  R  R  V  S  M  P  V  W  I  L  *  L  Q  G  T  S  L  L  N  P  L  L  N  R  L  C  I  Q  R  F  M  N  S  D  L  *  R  F  G  I  P  R  T  G  V  F  A  G  S  K  K  F  V  I  V  L  S  L  *  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0066K03.2" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107982" stop="108062"/>
                    <exon start="111597" stop="111758"/>
                    <exon start="112039" stop="112155"/>
                    <exon start="112222" stop="112325"/>
                    <exon start="112421" stop="112558"/>
                    <exon start="113763" stop="113850"/>
                    <exon start="114099" stop="114206"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>795</number_coding_nucleotides>
                  <number_encoded_amino_acids>265</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKSFSMESWIQHCQNADSAESIEMLKESSQLGCACPNSACSSQTCDHIYLFDNDYDDAKDIYGKPMRGRFPYDERGRIMLEEGYLIYECNQWCSCSKSCQNRVLQSGVRVKLEIYKTETRGWAVRAREAILRGTFVCEYVGEVLDEQEANKRRNRSATEGCGYFLEIDAHINDMSRLIEGQSPYVIDATNYGNISRYINHSCSPNLVNYQVLVESMDHQLAHVGFYARRDILAGEELTYNYRYKLLPGEGSPCLCGSSNCRGRLY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="110151" e_stop="110873"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="110151" e_stop="110873" e_length="723"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110151" stop="110873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110281" stop="110847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317229" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCACACACTGGATGGACAGCCACAAAAAGGAAGCCCAATGGCTTTTCAGGGGTTATGCTTGTGCTATCTGTCTGGATTCTTTTACTAATAAGAAAGTTTTGGAAACTCATGTGCAGGAAAGGCACCATTCACAGTTTGTTGAAAATTGCATGCTTTTTCAGTGTATTCCGTGTACTAGCAATTTTGGGAACTCAGAGGAGTTATGGTCCCACGTGCTCACCGCACATCCTTCCAGTTTTAGATGGTCTCATACTGCTCAAGAGAATCATTTTCCTGCAAGTGAGGTTGCATCAGAGAAGCCTGATATAGGCAACTCCTTGTCGACACAGAATTTCAATTCAGAGAACCAGTCTGGTTTCCGAAAATTCATCTGCAGATTTTGTGGCCTGAAATTTGACTTGCTACCTGATCTAGGCCGCCATCATCAGGCTGCTCACATGGGTCCTAATCCTGTTGGCTCTCATATCTCCAAGAAGGGCATCCGTTTATATGCTCATAAATTGAAGTCAGGAAGACTTAGCCGTCCAAAATTCAAGAAGGGTCTCGGATCTGTAGCATATAGGATTAGGAACAGAAATGCTCAGAATATGAAGAGACGCATCCTGTCATCGAACTCCATTATTAGTGGAAAACCTTCGATTCAACCTAGTGCAACCGAGGCAGCTGGTCTAGGTAGACTGGGAGATCCCCACTGCTTAGATATTGCAAAGATATTGTTTGCTG</gDNA_template>
            <first_frame> A  H  T  G  W  T  A  T  K  R  K  P  N  G  F  S  G  V  M  L  V  L  S  V  W  I  L  L  L  I  R  K  F  W  K  L  M  C  R  K  G  T  I  H  S  L  L  K  I  A  C  F  F  S  V  F  R  V  L  A  I  L  G  T  Q  R  S  Y  G  P  T  C  S  P  H  I  L  P  V  L  D  G  L  I  L  L  K  R  I  I  F  L  Q  V  R  L  H  Q  R  S  L  I  *  A  T  P  C  R  H  R  I  S  I  Q  R  T  S  L  V  S  E  N  S  S  A  D  F  V  A  *  N  L  T  C  Y  L  I  *  A  A  I  I  R  L  L  T  W  V  L  I  L  L  A  L  I  S  P  R  R  A  S  V  Y  M  L  I  N  *  S  Q  E  D  L  A  V  Q  N  S  R  R  V  S  D  L  *  H  I  G  L  G  T  E  M  L  R  I  *  R  D  A  S  C  H  R  T  P  L  L  V  E  N  L  R  F  N  L  V  Q  P  R  Q  L  V  *  V  D  W  E  I  P  T  A  *  I  L  Q  R  Y  C  L  L </first_frame>
            <second_frame>  H  T  L  D  G  Q  P  Q  K  G  S  P  M  A  F  Q  G  L  C  L  C  Y  L  S  G  F  F  Y  *  *  E  S  F  G  N  S  C  A  G  K  A  P  F  T  V  C  *  K  L  H  A  F  S  V  Y  S  V  Y  *  Q  F  W  E  L  R  G  V  M  V  P  R  A  H  R  T  S  F  Q  F  *  M  V  S  Y  C  S  R  E  S  F  S  C  K  *  G  C  I  R  E  A  *  Y  R  Q  L  L  V  D  T  E  F  Q  F  R  E  P  V  W  F  P  K  I  H  L  Q  I  L  W  P  E  I  *  L  A  T  *  S  R  P  P  S  S  G  C  S  H  G  S  *  S  C  W  L  S  Y  L  Q  E  G  H  P  F  I  C  S  *  I  E  V  R  K  T  *  P  S  K  I  Q  E  G  S  R  I  C  S  I  *  D  *  E  Q  K  C  S  E  Y  E  E  T  H  P  V  I  E  L  H  Y  *  W  K  T  F  D  S  T  *  C  N  R  G  S  W  S  R  *  T  G  R  S  P  L  L  R  Y  C  K  D  I  V  C   </second_frame>
            <third_frame>   T  H  W  M  D  S  H  K  K  E  A  Q  W  L  F  R  G  Y  A  C  A  I  C  L  D  S  F  T  N  K  K  V  L  E  T  H  V  Q  E  R  H  H  S  Q  F  V  E  N  C  M  L  F  Q  C  I  P  C  T  S  N  F  G  N  S  E  E  L  W  S  H  V  L  T  A  H  P  S  S  F  R  W  S  H  T  A  Q  E  N  H  F  P  A  S  E  V  A  S  E  K  P  D  I  G  N  S  L  S  T  Q  N  F  N  S  E  N  Q  S  G  F  R  K  F  I  C  R  F  C  G  L  K  F  D  L  L  P  D  L  G  R  H  H  Q  A  A  H  M  G  P  N  P  V  G  S  H  I  S  K  K  G  I  R  L  Y  A  H  K  L  K  S  G  R  L  S  R  P  K  F  K  K  G  L  G  S  V  A  Y  R  I  R  N  R  N  A  Q  N  M  K  R  R  I  L  S  S  N  S  I  I  S  G  K  P  S  I  Q  P  S  A  T  E  A  A  G  L  G  R  L  G  D  P  H  C  L  D  I  A  K  I  L  F  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0066K03.2" strand="+"/>
                <serials PGL_serial="21" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110153" stop="110872"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>720</number_coding_nucleotides>
                  <number_encoded_amino_acids>240</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THWMDSHKKEAQWLFRGYACAICLDSFTNKKVLETHVQERHHSQFVENCMLFQCIPCTSNFGNSEELWSHVLTAHPSSFRWSHTAQENHFPASEVASEKPDIGNSLSTQNFNSENQSGFRKFICRFCGLKFDLLPDLGRHHQAAHMGPNPVGSHISKKGIRLYAHKLKSGRLSRPKFKKGLGSVAYRIRNRNAQNMKRRILSSNSIISGKPSIQPSATEAAGLGRLGDPHCLDIAKILFA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="109353" e_stop="110123"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="109353" e_stop="110123" e_length="771"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109353" stop="109927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109372" stop="110123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315362" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACATCGCGCCTTATGCGGCTCTCCTTTCTGTAAGAAACACAGGCCCCGAGATGAGAATGGATTGGGTTCTATTTTGCCCGAGAGTAAACATAAACGCAAGCATGAGGACAATGTCCTTGGATTGGATACCTCAAATTGCAAAGATATTGTTCTCGCTGGAGCATTTGATGCTCCGCTCCAAGTTGATCCTATCTCAGTTCTTCGTGGAGAATCTTGCTATAGGAACAACTTGCTTGAGGTGCCTCAGTATTTGCAGAACAGACCAAGTGGTTCTGAGATGCATTGCATTGGTTTGTGGCCACATGGAAGTGAGCTTTGCATAGAAAGTCCAAAACGACATTCATTATACTGTGAGAAGCATTTACCAAGCTGGCTTAAACGTGCGAGGAATGGCAAGAGTAGGATTATTTCAAAGGAAGTATTCATAGAACTTTTGAAGGATTGCCAGTCCAGGGATCAAAGATTGTATTTACATCAAGCTTGTGAGCTTTTCTATAGACTTCTCAAAAGTTTACTTTCTTTGAGAAACCCAGTTCCAAAAGAAGTGCAATTCCAGTGGGTCATATCTGAAGCTTCTAAAGATCCAATGGTTGGTGAATTCTTAATGAAATTAGTTTGTACTGAAAAACAGAGGCTGAAAAGTGTTTGGGGATTTAGCGCTAGTGAAAATGCACAAGCTTCCTCTTACGTCAAAGAACCAATTCCATTATTAAGGATTACGGATAATGACCAGGATCATTGTGATGTCATAAAGTGCAAAATTTGCTCTG</gDNA_template>
            <first_frame> N  I  A  P  Y  A  A  L  L  S  V  R  N  T  G  P  E  M  R  M  D  W  V  L  F  C  P  R  V  N  I  N  A  S  M  R  T  M  S  L  D  W  I  P  Q  I  A  K  I  L  F  S  L  E  H  L  M  L  R  S  K  L  I  L  S  Q  F  F  V  E  N  L  A  I  G  T  T  C  L  R  C  L  S  I  C  R  T  D  Q  V  V  L  R  C  I  A  L  V  C  G  H  M  E  V  S  F  A  *  K  V  Q  N  D  I  H  Y  T  V  R  S  I  Y  Q  A  G  L  N  V  R  G  M  A  R  V  G  L  F  Q  R  K  Y  S  *  N  F  *  R  I  A  S  P  G  I  K  D  C  I  Y  I  K  L  V  S  F  S  I  D  F  S  K  V  Y  F  L  *  E  T  Q  F  Q  K  K  C  N  S  S  G  S  Y  L  K  L  L  K  I  Q  W  L  V  N  S  *  *  N  *  F  V  L  K  N  R  G  *  K  V  F  G  D  L  A  L  V  K  M  H  K  L  P  L  T  S  K  N  Q  F  H  Y  *  G  L  R  I  M  T  R  I  I  V  M  S  *  S  A  K  F  A  L </first_frame>
            <second_frame>  T  S  R  L  M  R  L  S  F  L  *  E  T  Q  A  P  R  *  E  W  I  G  F  Y  F  A  R  E  *  T  *  T  Q  A  *  G  Q  C  P  W  I  G  Y  L  K  L  Q  R  Y  C  S  R  W  S  I  *  C  S  A  P  S  *  S  Y  L  S  S  S  W  R  I  L  L  *  E  Q  L  A  *  G  A  S  V  F  A  E  Q  T  K  W  F  *  D  A  L  H  W  F  V  A  T  W  K  *  A  L  H  R  K  S  K  T  T  F  I  I  L  *  E  A  F  T  K  L  A  *  T  C  E  E  W  Q  E  *  D  Y  F  K  G  S  I  H  R  T  F  E  G  L  P  V  Q  G  S  K  I  V  F  T  S  S  L  *  A  F  L  *  T  S  Q  K  F  T  F  F  E  K  P  S  S  K  R  S  A  I  P  V  G  H  I  *  S  F  *  R  S  N  G  W  *  I  L  N  E  I  S  L  Y  *  K  T  E  A  E  K  C  L  G  I  *  R  *  *  K  C  T  S  F  L  L  R  Q  R  T  N  S  I  I  K  D  Y  G  *  *  P  G  S  L  *  C  H  K  V  Q  N  L  L   </second_frame>
            <third_frame>   H  R  A  L  C  G  S  P  F  C  K  K  H  R  P  R  D  E  N  G  L  G  S  I  L  P  E  S  K  H  K  R  K  H  E  D  N  V  L  G  L  D  T  S  N  C  K  D  I  V  L  A  G  A  F  D  A  P  L  Q  V  D  P  I  S  V  L  R  G  E  S  C  Y  R  N  N  L  L  E  V  P  Q  Y  L  Q  N  R  P  S  G  S  E  M  H  C  I  G  L  W  P  H  G  S  E  L  C  I  E  S  P  K  R  H  S  L  Y  C  E  K  H  L  P  S  W  L  K  R  A  R  N  G  K  S  R  I  I  S  K  E  V  F  I  E  L  L  K  D  C  Q  S  R  D  Q  R  L  Y  L  H  Q  A  C  E  L  F  Y  R  L  L  K  S  L  L  S  L  R  N  P  V  P  K  E  V  Q  F  Q  W  V  I  S  E  A  S  K  D  P  M  V  G  E  F  L  M  K  L  V  C  T  E  K  Q  R  L  K  S  V  W  G  F  S  A  S  E  N  A  Q  A  S  S  Y  V  K  E  P  I  P  L  L  R  I  T  D  N  D  Q  D  H  C  D  V  I  K  C  K  I  C  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0066K03.2" strand="+"/>
                <serials PGL_serial="21" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109355" stop="110122"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HRALCGSPFCKKHRPRDENGLGSILPESKHKRKHEDNVLGLDTSNCKDIVLAGAFDAPLQVDPISVLRGESCYRNNLLEVPQYLQNRPSGSEMHCIGLWPHGSELCIESPKRHSLYCEKHLPSWLKRARNGKSRIISKEVFIELLKDCQSRDQRLYLHQACELFYRLLKSLLSLRNPVPKEVQFQWVISEASKDPMVGEFLMKLVCTEKQRLKSVWGFSASENAQASSYVKEPIPLLRITDNDQDHCDVIKCKICS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="116844" PGL_stop="116381"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116844" e_stop="116381"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="116844" e_stop="116381" e_length="464"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116844" stop="116381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324093" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATCTATGTGCCCCTCTAATATTAAAACAGCCTTCATCGTTGTAAAATATATGGGAATGGGACTTCGTTTAAGAATCTGATCATATATATATTCCCGGACATACAATTTTTAATTAAGAGATTTTGAATTTAAATTTTATTTTATTTTATTTTTTTCCGTATTACATTATTTTTACTAGGGAGCATGGAAATTTTGCGGCGCGAATTCTAAATGAAAAACAAAAGAAACAAATAGAGAAGACCTAACTATGAGTATGATCTGTTTACCCAATTTAAAAATCTCGAGGCTCTTTATATTTCATTTTATTTTTAGGACAAATATATGTTGTTGTTCTAATTGAATATATTCGATAAATAAAGTAAACATAAAGGAATTAGAGAAAAATTTGATAATTGAAGTAGTGAAAAATGTAAATTATGGAGTAATACCTGTTAACAGAAAAATTAACAGGAAAGCTGGAG</gDNA_template>
            <first_frame> K  I  Y  V  P  L  *  Y  *  N  S  L  H  R  C  K  I  Y  G  N  G  T  S  F  K  N  L  I  I  Y  I  F  P  D  I  Q  F  L  I  K  R  F  *  I  *  I  L  F  Y  F  I  F  F  R  I  T  L  F  L  L  G  S  M  E  I  L  R  R  E  F  *  M  K  N  K  R  N  K  *  R  R  P  N  Y  E  Y  D  L  F  T  Q  F  K  N  L  E  A  L  Y  I  S  F  Y  F  *  D  K  Y  M  L  L  F  *  L  N  I  F  D  K  *  S  K  H  K  G  I  R  E  K  F  D  N  *  S  S  E  K  C  K  L  W  S  N  T  C  *  Q  K  N  *  Q  E  S  W   </first_frame>
            <second_frame>  K  S  M  C  P  S  N  I  K  T  A  F  I  V  V  K  Y  M  G  M  G  L  R  L  R  I  *  S  Y  I  Y  S  R  T  Y  N  F  *  L  R  D  F  E  F  K  F  Y  F  I  L  F  F  S  V  L  H  Y  F  Y  *  G  A  W  K  F  C  G  A  N  S  K  *  K  T  K  E  T  N  R  E  D  L  T  M  S  M  I  C  L  P  N  L  K  I  S  R  L  F  I  F  H  F  I  F  R  T  N  I  C  C  C  S  N  *  I  Y  S  I  N  K  V  N  I  K  E  L  E  K  N  L  I  I  E  V  V  K  N  V  N  Y  G  V  I  P  V  N  R  K  I  N  R  K  A  G  </second_frame>
            <third_frame>   N  L  C  A  P  L  I  L  K  Q  P  S  S  L  *  N  I  W  E  W  D  F  V  *  E  S  D  H  I  Y  I  P  G  H  T  I  F  N  *  E  I  L  N  L  N  F  I  L  F  Y  F  F  P  Y  Y  I  I  F  T  R  E  H  G  N  F  A  A  R  I  L  N  E  K  Q  K  K  Q  I  E  K  T  *  L  *  V  *  S  V  Y  P  I  *  K  S  R  G  S  L  Y  F  I  L  F  L  G  Q  I  Y  V  V  V  L  I  E  Y  I  R  *  I  K  *  T  *  R  N  *  R  K  I  *  *  L  K  *  *  K  M  *  I  M  E  *  Y  L  L  T  E  K  L  T  G  K  L  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0066K03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="118781" PGL_stop="119334"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118781" e_stop="119334"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="118781" e_stop="119334" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118781" stop="119334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118906" stop="119112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336728" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTTTTCAATTCATATAGGAGGGGAGCTCATCATTCCACTCTGTTAAATCTCTGATTTGGTGGTTCCCTTCATGCTTGACATCAAAGCTTTCATTCAATCATTTTCAATGCCTCTTCCTTGGACTTTTAAATTAAAAGATTTGGGGTTTTCAAGAAAATCTCAGATAGCTCTCTCTGTTTGTAGTTGAGTATTTGTTGTTTTCTCTATTTCAAGAATTTGGGTGTTTCAAGAATCCCTTTTGTCCTGCCATTTTACACCTTTAGGAGTGGTGAGTTTCAACTCTTCTTTCTTTGTTTCTTGACAACTATACTGTTAAAGGTTTGATCTTTTGTTTTGTTTGCTGTCCTTTTGGAGAACGAAAGAAAGGAACAATTTGTGTTTTTTTTATTGTTAAGTGTTGGAGTAGTAGCTATCTTTTATCAGAGGGGAAAAGATTAGCTCTTTGATGTTTTGTCCTAATTAGTAGATATTCATTCTTATGATCAAAGAGTTCCTTAGTTCTGTGTAGTCAACCTGATTTCAATTTCATCATCCCTTAAGTAAAAAAAATGC</gDNA_template>
            <first_frame> N  F  S  I  H  I  G  G  E  L  I  I  P  L  C  *  I  S  D  L  V  V  P  F  M  L  D  I  K  A  F  I  Q  S  F  S  M  P  L  P  W  T  F  K  L  K  D  L  G  F  S  R  K  S  Q  I  A  L  S  V  C  S  *  V  F  V  V  F  S  I  S  R  I  W  V  F  Q  E  S  L  L  S  C  H  F  T  P  L  G  V  V  S  F  N  S  S  F  F  V  S  *  Q  L  Y  C  *  R  F  D  L  L  F  C  L  L  S  F  W  R  T  K  E  R  N  N  L  C  F  F  Y  C  *  V  L  E  *  *  L  S  F  I  R  G  E  K  I  S  S  L  M  F  C  P  N  *  *  I  F  I  L  M  I  K  E  F  L  S  S  V  *  S  T  *  F  Q  F  H  H  P  L  S  K  K  N   </first_frame>
            <second_frame>  I  F  Q  F  I  *  E  G  S  S  S  F  H  S  V  K  S  L  I  W  W  F  P  S  C  L  T  S  K  L  S  F  N  H  F  Q  C  L  F  L  G  L  L  N  *  K  I  W  G  F  Q  E  N  L  R  *  L  S  L  F  V  V  E  Y  L  L  F  S  L  F  Q  E  F  G  C  F  K  N  P  F  C  P  A  I  L  H  L  *  E  W  *  V  S  T  L  L  S  L  F  L  D  N  Y  T  V  K  G  L  I  F  C  F  V  C  C  P  F  G  E  R  K  K  G  T  I  C  V  F  F  I  V  K  C  W  S  S  S  Y  L  L  S  E  G  K  R  L  A  L  *  C  F  V  L  I  S  R  Y  S  F  L  *  S  K  S  S  L  V  L  C  S  Q  P  D  F  N  F  I  I  P  *  V  K  K  M  </second_frame>
            <third_frame>   F  F  N  S  Y  R  R  G  A  H  H  S  T  L  L  N  L  *  F  G  G  S  L  H  A  *  H  Q  S  F  H  S  I  I  F  N  A  S  S  L  D  F  *  I  K  R  F  G  V  F  K  K  I  S  D  S  S  L  C  L  *  L  S  I  C  C  F  L  Y  F  K  N  L  G  V  S  R  I  P  F  V  L  P  F  Y  T  F  R  S  G  E  F  Q  L  F  F  L  C  F  L  T  T  I  L  L  K  V  *  S  F  V  L  F  A  V  L  L  E  N  E  R  K  E  Q  F  V  F  F  L  L  L  S  V  G  V  V  A  I  F  Y  Q  R  G  K  D  *  L  F  D  V  L  S  *  L  V  D  I  H  S  Y  D  Q  R  V  P  *  F  C  V  V  N  L  I  S  I  S  S  S  L  K  *  K  K  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0066K03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="+" PGL_start="122469" PGL_stop="122862"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122469" e_stop="122862"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="122469" e_stop="122862" e_length="394"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122469" stop="122862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227196" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTTTCCTCAAGTCAGGTGATAATTGTCCAAATCTTCAGAGAGCATTTGAAGTCTGGTGGCGTCGTACATTTGTCAGACCTTATGCAGAGACAGGAAGTACCCGCCCATTAGACCATGTTACGACTCCAAAGGTAACAGAACATTAGACGTTTATGGTATCATTTAAAAGGAAATTGTTGAAGATCAGTGTTAAGTTGAATTGAAGGAGACTTCTGTTGTATGCAATGAAGAAAGCTCGGGGGCTCTGTCAAATCAAGGATAAATTACTCATCTATATAAGGTGTCTAACTGATTCCTTGTGTGAATCATGTAAATTTAGAGTATCATTTGAATTGTCCAATTTGGTGTGTTAGTGATTTGTAAGAGGTATGTAATACAAGTTGGTTGTGTTAA</gDNA_template>
            <first_frame> S  F  L  K  S  G  D  N  C  P  N  L  Q  R  A  F  E  V  W  W  R  R  T  F  V  R  P  Y  A  E  T  G  S  T  R  P  L  D  H  V  T  T  P  K  V  T  E  H  *  T  F  M  V  S  F  K  R  K  L  L  K  I  S  V  K  L  N  *  R  R  L  L  L  Y  A  M  K  K  A  R  G  L  C  Q  I  K  D  K  L  L  I  Y  I  R  C  L  T  D  S  L  C  E  S  C  K  F  R  V  S  F  E  L  S  N  L  V  C  *  *  F  V  R  G  M  *  Y  K  L  V  V  L  </first_frame>
            <second_frame>  V  S  S  S  Q  V  I  I  V  Q  I  F  R  E  H  L  K  S  G  G  V  V  H  L  S  D  L  M  Q  R  Q  E  V  P  A  H  *  T  M  L  R  L  Q  R  *  Q  N  I  R  R  L  W  Y  H  L  K  G  N  C  *  R  S  V  L  S  *  I  E  G  D  F  C  C  M  Q  *  R  K  L  G  G  S  V  K  S  R  I  N  Y  S  S  I  *  G  V  *  L  I  P  C  V  N  H  V  N  L  E  Y  H  L  N  C  P  I  W  C  V  S  D  L  *  E  V  C  N  T  S  W  L  C  * </second_frame>
            <third_frame>   F  P  Q  V  R  *  *  L  S  K  S  S  E  S  I  *  S  L  V  A  S  Y  I  C  Q  T  L  C  R  D  R  K  Y  P  P  I  R  P  C  Y  D  S  K  G  N  R  T  L  D  V  Y  G  I  I  *  K  E  I  V  E  D  Q  C  *  V  E  L  K  E  T  S  V  V  C  N  E  E  S  S  G  A  L  S  N  Q  G  *  I  T  H  L  Y  K  V  S  N  *  F  L  V  *  I  M  *  I  *  S  I  I  *  I  V  Q  F  G  V  L  V  I  C  K  R  Y  V  I  Q  V  G  C  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02SLm0066K03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 400 chains have been computed
$ 
$ memory statistics:
$ 1150744 bytes spliced alignments in total
$ 207 spliced alignments have been stored
$ 5559 bytes was the average size of a spliced alignment
$ 38048 bytes predicted gene locations in total
$ 24 predicted gene locations have been stored
$ 1585 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 447 backtrace matrices have been allocated
$ 
$ date finished: 2006-11-17 22:13:25
-->
