<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 11:36:52"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T1492" ref_strand="+" ref_description="T1492">
      <seq>tctctcactgacagtagagtggataacgtttcaagaacccaaattccatcgatgtatgaatcttctttactgaaattccactaaatttttagctcactctcaagaatggtttcatccaccattctaattcagcaaccgacgaacttcttccaccagccagagcttcaccatcagctatggagaggtctgcagcatggatgtgttgcatcattgcagaaacaacctattttggtatgtaatagtaacaagagaaacagacctttgagagtttcttcaagtgctaatggtgctgttacttcttccactttggaggcctatgattcttctccgtctccttctgcatttcctctttttacacccccttctcaaccccaagatactcccgcttctcagttggaactggcagatcctgatttctacaaaataggttatgttagaagttttcgagcctacgggattgaattcagggagggaccacatgggtatggagtgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="15302" stop="17385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15602" g_stop="15775" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15776" i_stop="15870" i_length="95">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15871" g_stop="16089" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="393" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16090" i_stop="16982" i_length="893">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16983" g_stop="17085" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="496" r_length="103" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="T1492" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="T1492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15602" e_stop="15775"/>
          <exon e_start="15871" e_stop="16089"/>
          <exon e_start="16983" e_stop="17085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCACTGACAGTAGAGTGGATAACGTTTCAAGAACCCAAATTCCATCGATGTATGAATCTTCTTTACTGAAATTCCACTAAATTTTTAGCTCACTCTCAAGAATGGTTTCTTCCACCATTCTAATTCAGCAACCGACGAACTTCTTCCACCAGCCAGAGCTTCACCATCAGGTTAGGCCTTCGCCCCCACAAAACCAAATCATTCAAGAATGAATCTTTTTGCTTTTTGATTTTATGGGTGTTTGATTTTTTAATAATTGAACCAGCTATGGAGAGGTCTGCAGCATGGATGTGTTGCATCATTGCAGAAACAACCTATTTTGGTATGTAATAGTAACAAGAGAAACAGACCTTTGAGAGTTTCTTCAAGTGCTAATGGTGCTGTTACTTCTTCCACTTTGGAGGCCTATGATTCTTCTCCGTCTCCTTCTGCATTTCCTCTTTTTACACCCCCTTCTCAACCCCAAGATACTCCCGCTTCTCAGGTATTTTCTACTTGCCCCTTCTGTTTCATGTTCTTGAAGTTCAAGTTTAGTTTAATCACATCTTGTTACTTTCTGTGTGATAAGTGCTGTTTTCTTTTGGTAAGCTCACTGTATAAGTGCAATATGCAACACTTTTATGTACTCTTTTTTGTAGTTAGAGTTTTGGCACTGCATACCTTTTCCTCTTCAGTCATGGTTTCTTTTACTTTAATAGAATGCCAAACAAACAATGGACAACAATAAGCACTAGTCTCTCAATAAATTGAAGGAAGTGACAGCCAGGCAGTTGATGTTTGGAAAAGATAGGAGTTACACTTTGAAGATCGATGGAATTGTTCTTATGAATTGGTTTTGTTCCTCATTCAGATTTTCTTCACAAATTATTTGGTTCTAGGTCAGGTCCCATATAAATTTTTGGTGATTACTGTGTTAGAAATACAAAATGTTCTACATCAGGTATAGGGGAATCATATACCTAAAGCATTCTCTACTACTCCTTCACTGCATAAATTTTTCTTTAATATGTCGGAATTTCTAACCAATTAGTAAGTCCGTTCTCACACGTGTGAGTCTGCATTGGTTTCAGATATATAGAATGCCTAACATCTGGTGTTTAGGGGCATCCAAAGGGTTATGATGATTTTGAGCTACTCCCCAATTACCTTAAGATTTTCACTTAGATGCTCATGTTCGTTCTCACGTTCTCATGCATAGATATCCCATTTCTATTGTTACATAGTCAAACTAATGGTTGGAATCCCTCTACTTTCTCGGTCTTACATCCTTTGAGAAGCTGATGAACATATATTTTCCTATTTGATTATTTCAAATTATCCTTATTTTCTCCTGTTCTAATTGTTGATGATGGTGGTATAACATTTTCATATGAACAGTTGGAACTGGCAGATCCTGATTTCTACAAAATAGGATATGTTAGAAGTTTTCGAGCCTACGGGATTGAATTCAGGGAGGGACCAGATGGGTATGGAGTGTTTG</genome_strand>
        <mrna_strand>TCTCTCACTGACAGTAGAGTGGATAACGTTTCAAGAACCCAAATTCCATCGATGTATGAATCTTCTTTACTGAAATTCCACTAAATTTTTAGCTCACTCTCAAGAATGGTTTCATCCACCATTCTAATTCAGCAACCGACGAACTTCTTCCACCAGCCAGAGCTTCACCATCAG...............................................................................................CTATGGAGAGGTCTGCAGCATGGATGTGTTGCATCATTGCAGAAACAACCTATTTTGGTATGTAATAGTAACAAGAGAAACAGACCTTTGAGAGTTTCTTCAAGTGCTAATGGTGCTGTTACTTCTTCCACTTTGGAGGCCTATGATTCTTCTCCGTCTCCTTCTGCATTTCCTCTTTTTACACCCCCTTCTCAACCCCAAGATACTCCCGCTTCTCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAACTGGCAGATCCTGATTTCTACAAAATAGGTTATGTTAGAAGTTTTCGAGCCTACGGGATTGAATTCAGGGAGGGACCACATGGGTATGGAGTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At4g20130" ref_strand="+" ref_description="C2_At4g20130">
      <seq>ccggagatgccaaaattcatctagacacctttttatcggtctttaacatatctggcctccctggagaatattaccacaacacaggtaagctatcaaatgatggagacagattcgtcgatggagcaataatagcagccgcaagaacgttgcccacttggtcagatggagatctccctccaattccaagtctagagaggaaagcagtgaaggagctgcaagaagaatgccaccagatgcttgcagaatttcccacaacttctgacgaagaccagaaaatcctagattcgatgcctgaatgcaggagaacattcgaagcagcaataaagtatagattacatcggaaattactgatagagaaggttatacaggccttggacatttaccaagacaggattctgttctaaacatgaataacagcaggagttgaagcaatctttaccagaaatcatgtagccatagaagacgggcgtcaagattatggttccatttcagctatgcagaaagctttatctatcacaatagcttttgcaacattttgagggcttttgttgggggtgggtgtaggaagtagctagtaatggtgtataggtggaaaatgacttataccattagttttggaaagatatgaagtgaagaaaaatgagaagttctctatagaaatcatgatgaaaatgaaggatagctttggtggatatgtttgataacaagtagaagggctcttttgcatgaatgaaatatatgaattctctttaaccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="+" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="21894" stop="23783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22194" g_stop="22274" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22275" i_stop="22367" i_length="93">
            <donor d_prob="0.282" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22368" g_stop="22568" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="282" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22569" i_stop="22904" i_length="336">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22905" g_stop="22947" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="325" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22948" i_stop="23051" i_length="104">
            <donor d_prob="0.854" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23052" g_stop="23490" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="764" r_length="439" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="+" ref_id="C2_At4g20130" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="+"/>
        <rDNA rDNA_id="C2_At4g20130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22194" e_stop="22274"/>
          <exon e_start="22368" e_stop="22568"/>
          <exon e_start="22905" e_stop="22947"/>
          <exon e_start="23052" e_stop="23490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGAGATGCCAAAATTCATCTAGACACCTTTTTATCGGTCTTTAACATATCTGGCCTCCCTGGAGAATATTACCACAACAGTATGGGTCTTAAAGAATGTTTTTGATATACTAGAGCTCCTTCACTGATCTAGGTTTGCAATTATGTTTAGAATCCTTGTTTAAAACTTGAAGCAGGTAAGCTATCAAATGATGGAGACAGATTCGTCGATGGAGCAATAATAGCAGCCGCAAGAACGTTGCCCACTTGGTCAGATGGAGATCTCCCTCCAATTCCAAGTCTAGAGAGGAAAGCAGTGAAGGAGCTGCAAGAAGAATGCCACCAGATGCTTGCAGAATTTCCCACAACTTCTGACGAAGACCAGAAAATCCTAGGTAAGCCTGGATTGTGTACTTCTATCTAATGATGCATGTTGAAGAAGAAATATAACTCCATCTTCTATGCGCTATGGTTGTCACCTGTATTTCATGCTAAAAAACAATGTGGATTTATGTATATTGAATTCAGAATCCATCAATCCTAGTACTGACTAACATCATAAGTTTTGGCTTTTGCCACGAATTACAAAGCTTGTAGGCGTCATGCTACACATGGGCTGACACTGTTTACCACTTTTTGTTGATTTCATCGGTTGACTTTGTAACATATTTCATTATTCACGTCATAATGCTGTCCAACAATGTATTCGTTTTCCTGGTTTCTGTGAACAGATTCGATGCCTGAATGCAGGAGAACATTCGAAGCAGCAATAAAGTACGTAATGTATGAAGTATTATTCGTCATTGCATGCAGAGATCATCTTATCTTTGCTTCAATGTGAATGCAGATCTTATTTACATAATGCTTTCGTTTGGCAGGTATAGATTACATCGGAAATTACTGATAGAGAAGGTTATACAGGCCTTGGACATTTACCAAGACAGGATTCTGTTCTAAACATGAATAACAGCAGGAGTTGAAGCAATCTTTACCAGAAATCATGTAGCCATAGAAGACGGGCGTCAAGATTATGGTTCCATTTCAGCTATGCAGAAAGCTTTATCTATCACAATAGCTTTTGCAACATTTTGAGGGCTTTTGTTGGGGGTGGGTGTAGGAAGTAGCTAGTAATGGTGTATAGGTGGAAAATGACTTATACCATTAGTTTTGGAAAGATATGAAGTGAAGAAAAATGAGAAGTTCTCTATAGAAATCATGATGAAAATGAAGGATAGCTTTGGTGGATATGTTTGATAACAAGTAGAAGGGCTCTTTTGCATGAATGAAATATATGAATTCTCTTTAACCAATTCCACT</genome_strand>
        <mrna_strand>CCGGAGATGCCAAAATTCATCTAGACACCTTTTTATCGGTCTTTAACATATCTGGCCTCCCTGGAGAATATTACCACAACA.............................................................................................CAGGTAAGCTATCAAATGATGGAGACAGATTCGTCGATGGAGCAATAATAGCAGCCGCAAGAACGTTGCCCACTTGGTCAGATGGAGATCTCCCTCCAATTCCAAGTCTAGAGAGGAAAGCAGTGAAGGAGCTGCAAGAAGAATGCCACCAGATGCTTGCAGAATTTCCCACAACTTCTGACGAAGACCAGAAAATCCTAG................................................................................................................................................................................................................................................................................................................................................ATTCGATGCCTGAATGCAGGAGAACATTCGAAGCAGCAATAAA........................................................................................................GTATAGATTACATCGGAAATTACTGATAGAGAAGGTTATACAGGCCTTGGACATTTACCAAGACAGGATTCTGTTCTAAACATGAATAACAGCAGGAGTTGAAGCAATCTTTACCAGAAATCATGTAGCCATAGAAGACGGGCGTCAAGATTATGGTTCCATTTCAGCTATGCAGAAAGCTTTATCTATCACAATAGCTTTTGCAACATTTTGAGGGCTTTTGTTGGGGGTGGGTGTAGGAAGTAGCTAGTAATGGTGTATAGGTGGAAAATGACTTATACCATTAGTTTTGGAAAGATATGAAGTGAAGAAAAATGAGAAGTTCTCTATAGAAATCATGATGAAAATGAAGGATAGCTTTGGTGGATATGTTTGATAACAAGTAGAAGGGCTCTTTTGCATGAATGAAATATATGAATTCTCTTTAACCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At3g47630" ref_strand="+" ref_description="C2_At3g47630">
      <seq>gttgtacggatgcatgacttgattcaagacatattgggatgggagaggttttatctcagcggtcgtttgcagaaaccagtgaacattcttacggataacttggatataaaaagcgtgaacagcgtgaatctgaaagctgcaacttctgctgctcttctccttttgccatctaaattcacggaggaagatttatatgccaaaatctgtagcctctcatatacaggtgacttgcgtatgctttttgcagaggacaaaaataaggtagatttgacatttgagtgggtttaaattttaaaattttgtggccctgactgtaccacatggaagtatcaatctacaagtaagtttatagtgtaattgggtagtttctcaattttatagttttatattacttccagcggatcaatgaatatcagttaatttgcatctcatatctacaaaatatcctttttggactagaatttgaatctcaacttttagcatagtatctcatagtgcattggcaactttcatgccacattaattgattgaattgattcttccattccgtgtacatgaatttcttcattgcatattgatccaggtgaacaaaattgtacaaggacagttccatttatttgaggaaatgtataagccatttctggaagaatacgaggccaaaaacttgttgagattttcagtagctggtgataagcaagtaaacatatttcaggattgtggattatctgctgcttccaccttggtttcttctcttccttcatcaatcagaagtgagatggccatgaaacttggagaaaagagaattctggatgactctggtagagttagacaacaaatagtgattggttcaaaagaacaggctgctgagtgcatgcagaggctagttagacgaaaggttatgttttctagcacaaggcaggctgttgcaggtttattgactgctggtgctgttcatggagtcagatatgtagcaaacaagatgcgcaaggcttggaaatcttgggtgtaattgtttcctgtttttgggtgacatcacgtcttttaactggttcagacatggggatatagccacaaccacagttacacctaatgacatgcggttcaacgatggagttcttagcatggatagagtttgccgactctcctgctgctttttcaaaataagacaaatagaatttgaggggggaaataaccaacaacccatcaaaaaatttcttctgaaagttttctgttcacttgtattcttttcttttatttatttcaaaggtgggaagagttcttcagggaaggtcgagctgttgtatgtttagaacatcctggtgaaaagaagttaatcaatgtttctaaacaaggaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02SLm0073G04-TBdWM/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02SLm0073G04.1" temp_strand="-" temp_description="C02SLm0073G04.1  AC215486.2 htgs_phase:3 submitted_to_sgn_as:C02SLm0073G04 sequenced_by:kribb upload_account_name:korea">
        <position start="73749" stop="69331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73449" g_stop="73372" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73371" i_stop="71960" i_length="1412">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71959" g_stop="71855" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="183" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71854" i_stop="71768" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.842" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71767" g_stop="71239" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="712" r_length="529" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71238" i_stop="70590" i_length="649">
            <donor d_prob="0.882" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70589" g_stop="70484" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="818" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70483" i_stop="70168" i_length="316">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.843" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70167" g_stop="69624" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="819" r_stop="1362" r_length="544" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02SLm0073G04.1" gen_strand="-" ref_id="C2_At3g47630" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02SLm0073G04.1" gen_strand="-"/>
        <rDNA rDNA_id="C2_At3g47630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73449" e_stop="73372"/>
          <exon e_start="71959" e_stop="71855"/>
          <exon e_start="71767" e_stop="71239"/>
          <exon e_start="70589" e_stop="70484"/>
          <exon e_start="70167" e_stop="69624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTACGGATGCATGACTTGATTCAAGACATATTGGGATGGGAGAGGTTTTATCTCAGCGGTCGTTTGCAGAAACCAGTATGGCTTGTTTTGAACTGCTATTTAAATAACATATTTTACAAAGGACTTCGGTTACAGTATTAGTTACATTGATGTAAGGACTTCCGAATGAATTTAAGTCAGTTAGTATATTTTGCAATCCTTTTGTGCCTCTTAGTCATTATTGTGGTACTTCTATGTCACATGAATTTAATTTCTGTTGTGATGAATTTAATAATATTGATGGTATCAGGAATAGTTCTTTATTGATGACTGACTTTCCTGAGTTGCTATAAATACCTATCAGTCAAAGAAGCATGAAATCATCATTTAAGAAGTAACTTGCTACATGATGTTAGCTTACTCTCATTTGTATAACAAAAGGGAGAAAACTTGGTAATGTTTTTATTCGCATTAAATGTGGTCAAATAAGCTTACATTGGTTAGGATAATATCCACGAGCTCTTGTATGTTCTCTTAGCCGTAGGATCTCACTTTGGTGGTACCTAGAGACATAAGAATAAAGAGTTATCATAATAACGCTGTATTATGATCCTATTATAATAACGTTGTATTATAATCCTATCATAATAACGTTGTATTATAATCCTATCTAATTTTCCTCTTCCCCAAAAGAAATCCTATCTAATATTTCCTCCCAAAAAAAATATAATCGATTCTGGCTTGAAACTATATGTATATCTCAGCCTGCATTTTCTTACAAAACAAATTAGCATGTGCTTTTGATATTTGATGGCACACCACTGCTAGCTTTTAAGCTCTCTCTTCTATTAACCTGAAAATGAACATGAAAAGTCAAGTGAGTGTGTATGGTAACTTGTTGTACTCTCAAAGATATTCCTAACAGAAGCAGTGCACTCAAACATTTCTTGCGAGTGTTAAAAAGAACTTCAGTTGGAAATATTCGAATGAGATGCTTTGTTTTCTTCTGTCTATGTCTGCGCAAAGGTTTTAAACTTTGATAAACTTGACATTTGACCACCAAAGCTCTATGTTGCATCAGATTTTACAGCTCATTGCAAAATGGAACCTGCATCCCTAACTCCCGTCTGATTTCTAGTTTCCTTCTTAGTCGTATTAGTTGGAGGCTTAATAGCTATTGCTTGATTTTTATTAGACATTTCTATGCTTTCTAATTGGGAAGTCATGGGCTCATGGCTGAAATTCTGCGCTTCCTGAATAGAGAGTTTAAGTCTACTGTGGACTGAAAATATAGAAATGCTCCTGATAAAATATATAAAAATACATAGAGAGGCCGTCTGTTTCTCTAAATTATATTACATGATGCATTCAACAGATATCGCTCAACTGATTTTTAGTTTCATACTCAGATATAATATTCTGAATTTCTTTATTGGCTCCTTTTTTGCTTGTTGTGGTGAGTCTGGTGACTGTCCGTCATCCATAACTTACATTTACTTCTAAATCAGGTGAACATTCTTACGGATAACTTGGATATAAAAAGCGTGAACAGCGTGAATCTGAAAGCTGCAACTTCTGCTGCTCTTCTCCTTTTGCCATCTAAATTCACGGAGGTTAGTCTCTTTAATCATTTCTGATTTCTTGTCAAATAGTACAGGGACATAACACATGCCACTTGGATTTGGTGTTTACGCATGCAGGAAGATTTATATGCCAAAATCTGTAGCCTCTCATATACAGGTGACTTGCGTATGCTTTTTGCAGAGGACAAAAATAAGGTAGATTTGACATTTGAGTGGGTTTAAATTTTAAAATTTTGTGGCCCTGACTGTACCACATGGAAGTATCAATCTACAAGTAAGTTTATAGTGTAATTGGGTAGTTTCTCAATTTTATAGTTTTATATTACTTCCAGCGGATCAATGAATATCAGTTAATTTGCATCTCATATCTACAAAATATCCTTTTTGGACTAGAATTTGAATCTCAACTTTTAGCATAGTATCTCATAGTGCATTGGCAACTTTCATGCCACATTAATTGATTGAATTGATTCTTCCATTCCGTGTACATGAATTTCTTCATTGCATATTGATCCAGGTGAACAAAATTGTACAAGGACAGTTCCATTTATTTGAGGAAATGTATAAGCCATTTCTGGAAGAATACGAGGCCAAAAACTTGTTGAGATTTTCAGTAGCTGGTGATAAGCAAGTAAACATATTTCAGGTCTCTCTCTTTTCTAAAGCTTTGTCTCGTGTTGCTTCCTTAACATGGTTAATTGTCCTGAATGATGCTAATAATTCTTTATTATAATCAATGCTTCTAATACGGGAACATATTTATATCGACGATAAAACACGTTTTTCTATTGAAGCATAAAAAAAAAAGTATGGTGTGAATGGGTGATCAAGAATATACAGCATGAGACATGCTAATGGGGCCCTTCTATTGTTGCCTGTTGTGTACATTTTTAGTGGTAATTTTTGACCTTGAATGGTAGCCTCTGTGGTCAGTGAAATTTATCTTTCTATTCTGAACATTTCTCAAATAGCTTTGAAGTCATTTGCTTTCACGACTTGTCAAGTAGAGTTTTGGGCATCACAAGTTCCCTTGCATGAAAATTAGTTAGTACTTTTACATGATTACAATTTGTACACACTCTGTTCATTGAGTCAATCTCGATCTTTGATTGCTTTCTTAAAATTTTCATATTACTTCTGGTAATACATCTATATGAGATTCTTTGACTACACAAGCACATCTTTTCTTTCTGATTGATCCAAGGAGATTGATATTGATTACACCTCTGTTGAGATATGTAAATAGGAAAATCAAGGTCAAGTCAATTGACATCTTTTAGTGTTATCCAAATCAGGATTGTGGATTATCTGCTGCTTCCACCTTGGTTTCTTCTCTTCCTTCATCAATCAGAAGTGAGATGGCCATGAAACTTGGAGAAAAGAGAATTCTGGATGACTCTGGTACGTAAATCAACTGCAAAAAGAGTGAATTTTCTGGAAAGAATCTTAAAATTTCCTGTTCTTTCAGATTTTTTCCCTTGTTAGTAGTTCCTGTTGAATTGTGTCTAACTTCCTCATTAGTGAACATACACTTATATTTTAGTTATTTCACGTCTGTAACTCTTACGCTTAGATCCTGATACCATGTTGGATTGTGTGCTTGTCTCATCTCTAGAGAAAAGTTCTATTTAGTTATATTACTTGTTATGATAAGCTCTTCTAATGTTCCCTCCTCAGCTTAATCAAATCATTTCACCTATGCCATATTTTCTTGTAGGTAGAGTTAGACAACAAATAGTGATTGGTTCAAAAGAACAGGCTGCTGAGTGCATGCAGAGGCTAGTTAGACGAAAGGTTATGTTTTCTAGCACAAGGCAGGCTGTTGCAGGTTTATTGACTGCTGGTGCTGTTCATGGAGTCAGATATGTAGCAAACAAGATGCGCAAGGCTTGGAAATCTTGGGTGTAATTGTTTCCTGTTTTTGGGTGACATCACGTCTTTTAACTGGTTCAGACATGGGGATATAGCCACAACCACAGTTACACCTAATGACATGCGGTTCAACCATGGAGTTCTTAGCATGGATAGAGTTTGCCGACTCTCCTGCTGCTTTTTCAAAATAAGACAAATAGAATTTGAGGGGGGAAATAACCAACAACCCATCAAAAAATTTCTTCTGAAAGTTTTCTGTTCACTTGTATTCTTTTCTTTTATTTATTTCAAAGGTGGGAAGAGTTCTTCAGGGAAGGTCGAGCTGTTGTATGTTTAGAACATCCTGGTGAAAAGAAGTTAATCAATGTTTCTAAACAAGGAATTGCTAT</genome_strand>
        <mrna_strand>GTTGTACGGATGCATGACTTGATTCAAGACATATTGGGATGGGAGAGGTTTTATCTCAGCGGTCGTTTGCAGAAACCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACATTCTTACGGATAACTTGGATATAAAAAGCGTGAACAGCGTGAATCTGAAAGCTGCAACTTCTGCTGCTCTTCTCCTTTTGCCATCTAAATTCACGGAG.......................................................................................GAAGATTTATATGCCAAAATCTGTAGCCTCTCATATACAGGTGACTTGCGTATGCTTTTTGCAGAGGACAAAAATAAGGTAGATTTGACATTTGAGTGGGTTTAAATTTTAAAATTTTGTGGCCCTGACTGTACCACATGGAAGTATCAATCTACAAGTAAGTTTATAGTGTAATTGGGTAGTTTCTCAATTTTATAGTTTTATATTACTTCCAGCGGATCAATGAATATCAGTTAATTTGCATCTCATATCTACAAAATATCCTTTTTGGACTAGAATTTGAATCTCAACTTTTAGCATAGTATCTCATAGTGCATTGGCAACTTTCATGCCACATTAATTGATTGAATTGATTCTTCCATTCCGTGTACATGAATTTCTTCATTGCATATTGATCCAGGTGAACAAAATTGTACAAGGACAGTTCCATTTATTTGAGGAAATGTATAAGCCATTTCTGGAAGAATACGAGGCCAAAAACTTGTTGAGATTTTCAGTAGCTGGTGATAAGCAAGTAAACATATTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGTGGATTATCTGCTGCTTCCACCTTGGTTTCTTCTCTTCCTTCATCAATCAGAAGTGAGATGGCCATGAAACTTGGAGAAAAGAGAATTCTGGATGACTCTG............................................................................................................................................................................................................................................................................................................................GTAGAGTTAGACAACAAATAGTGATTGGTTCAAAAGAACAGGCTGCTGAGTGCATGCAGAGGCTAGTTAGACGAAAGGTTATGTTTTCTAGCACAAGGCAGGCTGTTGCAGGTTTATTGACTGCTGGTGCTGTTCATGGAGTCAGATATGTAGCAAACAAGATGCGCAAGGCTTGGAAATCTTGGGTGTAATTGTTTCCTGTTTTTGGGTGACATCACGTCTTTTAACTGGTTCAGACATGGGGATATAGCCACAACCACAGTTACACCTAATGACATGCGGTTCAACGATGGAGTTCTTAGCATGGATAGAGTTTGCCGACTCTCCTGCTGCTTTTTCAAAATAAGACAAATAGAATTTGAGGGGGGAAATAACCAACAACCCATCAAAAAATTTCTTCTGAAAGTTTTCTGTTCACTTGTATTCTTTTCTTTTATTTATTTCAAAGGTGGGAAGAGTTCTTCAGGGAAGGTCGAGCTGTTGTATGTTTAGAACATCCTGGTGAAAAGAAGTTAATCAATGTTTCTAAACAAGGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>3</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="15602" PGL_stop="17085"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15602" e_stop="15775"/>
            <exon e_start="15871" e_stop="16089"/>
            <exon e_start="16983" e_stop="17085"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.932" acc_prob="0.998" e_score="0.994"/>
          <exon-intron don_prob="1.000" acc_prob="0.905" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="15602" e_stop="15775" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="0.932" acc_prob="0.998">
            <gDNA_intron_boundary i_start="15776" i_stop="15870" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15871" e_stop="16089" e_length="219"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.905">
            <gDNA_intron_boundary i_start="16090" i_stop="16982" i_length="893"/>
          </intron>
          <exon e_serial="3" e_score="0.981">
            <gDNA_exon_boundary e_start="16983" e_stop="17085" e_length="103"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15602" stop="15775"/>
              <exon start="15871" stop="16089"/>
              <exon start="16983" stop="17085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T1492" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCTCACTGACAGTAGAGTGGATAACGTTTCAAGAACCCAAATTCCATCGATGTATGAATCTTCTTTACTGAAATTCCACTAAATTTTTAGCTCACTCTCAAGAATGGTTTCTTCCACCATTCTAATTCAGCAACCGACGAACTTCTTCCACCAGCCAGAGCTTCACCATCAG : CTATGGAGAGGTCTGCAGCATGGATGTGTTGCATCATTGCAGAAACAACCTATTTTGGTATGTAATAGTAACAAGAGAAACAGACCTTTGAGAGTTTCTTCAAGTGCTAATGGTGCTGTTACTTCTTCCACTTTGGAGGCCTATGATTCTTCTCCGTCTCCTTCTGCATTTCCTCTTTTTACACCCCCTTCTCAACCCCAAGATACTCCCGCTTCTCAG : TTGGAACTGGCAGATCCTGATTTCTACAAAATAGGATATGTTAGAAGTTTTCGAGCCTACGGGATTGAATTCAGGGAGGGACCAGATGGGTATGGAGTGTTTG</gDNA_template>
            <first_frame> S  L  T  D  S  R  V  D  N  V  S  R  T  Q  I  P  S  M  Y  E  S  S  L  L  K  F  H  *  I  F  S  S  L  S  R  M  V  S  S  T  I  L  I  Q  Q  P  T  N  F  F  H  Q  P  E  L  H  H  Q  :  L  W  R  G  L  Q  H  G  C  V  A  S  L  Q  K  Q  P  I  L  V  C  N  S  N  K  R  N  R  P  L  R  V  S  S  S  A  N  G  A  V  T  S  S  T  L  E  A  Y  D  S  S  P  S  P  S  A  F  P  L  F  T  P  P  S  Q  P  Q  D  T  P  A  S  Q  :  L  E  L  A  D  P  D  F  Y  K  I  G  Y  V  R  S  F  R  A  Y  G  I  E  F  R  E  G  P  D  G  Y  G  V  F  </first_frame>
            <second_frame>  L  S  L  T  V  E  W  I  T  F  Q  E  P  K  F  H  R  C  M  N  L  L  Y  *  N  S  T  K  F  L  A  H  S  Q  E  W  F  L  P  P  F  *  F  S  N  R  R  T  S  S  T  S  Q  S  F  T  I  S :   Y  G  E  V  C  S  M  D  V  L  H  H  C  R  N  N  L  F  W  Y  V  I  V  T  R  E  T  D  L  *  E  F  L  Q  V  L  M  V  L  L  L  L  P  L  W  R  P  M  I  L  L  R  L  L  L  H  F  L  F  L  H  P  L  L  N  P  K  I  L  P  L  L  S :   W  N  W  Q  I  L  I  S  T  K  *  D  M  L  E  V  F  E  P  T  G  L  N  S  G  R  D  Q  M  G  M  E  C  L </second_frame>
            <third_frame>   S  H  *  Q  *  S  G  *  R  F  K  N  P  N  S  I  D  V  *  I  F  F  T  E  I  P  L  N  F  *  L  T  L  K  N  G  F  F  H  H  S  N  S  A  T  D  E  L  L  P  P  A  R  A  S  P  S   : A  M  E  R  S  A  A  W  M  C  C  I  I  A  E  T  T  Y  F  G  M  *  *  *  Q  E  K  Q  T  F  E  S  F  F  K  C  *  W  C  C  Y  F  F  H  F  G  G  L  *  F  F  S  V  S  F  C  I  S  S  F  Y  T  P  F  S  T  P  R  Y  S  R  F  S   : V  G  T  G  R  S  *  F  L  Q  N  R  I  C  *  K  F  S  S  L  R  D  *  I  Q  G  G  T  R  W  V  W  S  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15686" stop="15775"/>
                    <exon start="15871" stop="16089"/>
                    <exon start="16983" stop="17084"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>411</number_coding_nucleotides>
                  <number_encoded_amino_acids>137</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFSSLSRMVSSTILIQQPTNFFHQPELHHQLWRGLQHGCVASLQKQPILVCNSNKRNRPLRVSSSANGAVTSSTLEAYDSSPSPSAFPLFTPPSQPQDTPASQLELADPDFYKIGYVRSFRAYGIEFREGPDGYGVF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="22194" PGL_stop="23490"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22194" e_stop="22274"/>
            <exon e_start="22368" e_stop="22568"/>
            <exon e_start="22905" e_stop="22947"/>
            <exon e_start="23052" e_stop="23490"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.282" acc_prob="0.906" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.854" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22194" e_stop="22274" e_length="81"/>
          </exon>
          <intron i_serial="1" don_prob="0.282" acc_prob="0.906">
            <gDNA_intron_boundary i_start="22275" i_stop="22367" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22368" e_stop="22568" e_length="201"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.983">
            <gDNA_intron_boundary i_start="22569" i_stop="22904" i_length="336"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22905" e_stop="22947" e_length="43"/>
          </exon>
          <intron i_serial="3" don_prob="0.854" acc_prob="0.998">
            <gDNA_intron_boundary i_start="22948" i_stop="23051" i_length="104"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="23052" e_stop="23490" e_length="439"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22194" stop="22274"/>
              <exon start="22368" stop="22568"/>
              <exon start="22905" stop="22947"/>
              <exon start="23052" stop="23490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At4g20130" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGGAGATGCCAAAATTCATCTAGACACCTTTTTATCGGTCTTTAACATATCTGGCCTCCCTGGAGAATATTACCACAACA : CAGGTAAGCTATCAAATGATGGAGACAGATTCGTCGATGGAGCAATAATAGCAGCCGCAAGAACGTTGCCCACTTGGTCAGATGGAGATCTCCCTCCAATTCCAAGTCTAGAGAGGAAAGCAGTGAAGGAGCTGCAAGAAGAATGCCACCAGATGCTTGCAGAATTTCCCACAACTTCTGACGAAGACCAGAAAATCCTAG : ATTCGATGCCTGAATGCAGGAGAACATTCGAAGCAGCAATAAA : GTATAGATTACATCGGAAATTACTGATAGAGAAGGTTATACAGGCCTTGGACATTTACCAAGACAGGATTCTGTTCTAAACATGAATAACAGCAGGAGTTGAAGCAATCTTTACCAGAAATCATGTAGCCATAGAAGACGGGCGTCAAGATTATGGTTCCATTTCAGCTATGCAGAAAGCTTTATCTATCACAATAGCTTTTGCAACATTTTGAGGGCTTTTGTTGGGGGTGGGTGTAGGAAGTAGCTAGTAATGGTGTATAGGTGGAAAATGACTTATACCATTAGTTTTGGAAAGATATGAAGTGAAGAAAAATGAGAAGTTCTCTATAGAAATCATGATGAAAATGAAGGATAGCTTTGGTGGATATGTTTGATAACAAGTAGAAGGGCTCTTTTGCATGAATGAAATATATGAATTCTCTTTAACCAATTCCACT</gDNA_template>
            <first_frame> P  E  M  P  K  F  I  *  T  P  F  Y  R  S  L  T  Y  L  A  S  L  E  N  I  T  T  T  :  Q  V  S  Y  Q  M  M  E  T  D  S  S  M  E  Q  *  *  Q  P  Q  E  R  C  P  L  G  Q  M  E  I  S  L  Q  F  Q  V  *  R  G  K  Q  *  R  S  C  K  K  N  A  T  R  C  L  Q  N  F  P  Q  L  L  T  K  T  R  K  S  *  :  I  R  C  L  N  A  G  E  H  S  K  Q  Q  *   : S  I  D  Y  I  G  N  Y  *  *  R  R  L  Y  R  P  W  T  F  T  K  T  G  F  C  S  K  H  E  *  Q  Q  E  L  K  Q  S  L  P  E  I  M  *  P  *  K  T  G  V  K  I  M  V  P  F  Q  L  C  R  K  L  Y  L  S  Q  *  L  L  Q  H  F  E  G  F  C  W  G  W  V  *  E  V  A  S  N  G  V  *  V  E  N  D  L  Y  H  *  F  W  K  D  M  K  *  R  K  M  R  S  S  L  *  K  S  *  *  K  *  R  I  A  L  V  D  M  F  D  N  K  *  K  G  S  F  A  *  M  K  Y  M  N  S  L  *  P  I  P   </first_frame>
            <second_frame>  R  R  C  Q  N  S  S  R  H  L  F  I  G  L  *  H  I  W  P  P  W  R  I  L  P  Q  H :   R  *  A  I  K  *  W  R  Q  I  R  R  W  S  N  N  S  S  R  K  N  V  A  H  L  V  R  W  R  S  P  S  N  S  K  S  R  E  E  S  S  E  G  A  A  R  R  M  P  P  D  A  C  R  I  S  H  N  F  *  R  R  P  E  N  P  R :   F  D  A  *  M  Q  E  N  I  R  S  S  N  K  :  V  *  I  T  S  E  I  T  D  R  E  G  Y  T  G  L  G  H  L  P  R  Q  D  S  V  L  N  M  N  N  S  R  S  *  S  N  L  Y  Q  K  S  C  S  H  R  R  R  A  S  R  L  W  F  H  F  S  Y  A  E  S  F  I  Y  H  N  S  F  C  N  I  L  R  A  F  V  G  G  G  C  R  K  *  L  V  M  V  Y  R  W  K  M  T  Y  T  I  S  F  G  K  I  *  S  E  E  K  *  E  V  L  Y  R  N  H  D  E  N  E  G  *  L  W  W  I  C  L  I  T  S  R  R  A  L  L  H  E  *  N  I  *  I  L  F  N  Q  F  H  </second_frame>
            <third_frame>   G  D  A  K  I  H  L  D  T  F  L  S  V  F  N  I  S  G  L  P  G  E  Y  Y  H  N   : T  G  K  L  S  N  D  G  D  R  F  V  D  G  A  I  I  A  A  A  R  T  L  P  T  W  S  D  G  D  L  P  P  I  P  S  L  E  R  K  A  V  K  E  L  Q  E  E  C  H  Q  M  L  A  E  F  P  T  T  S  D  E  D  Q  K  I  L   : D  S  M  P  E  C  R  R  T  F  E  A  A  I  K :   Y  R  L  H  R  K  L  L  I  E  K  V  I  Q  A  L  D  I  Y  Q  D  R  I  L  F  *  T  *  I  T  A  G  V  E  A  I  F  T  R  N  H  V  A  I  E  D  G  R  Q  D  Y  G  S  I  S  A  M  Q  K  A  L  S  I  T  I  A  F  A  T  F  *  G  L  L  L  G  V  G  V  G  S  S  *  *  W  C  I  G  G  K  *  L  I  P  L  V  L  E  R  Y  E  V  K  K  N  E  K  F  S  I  E  I  M  M  K  M  K  D  S  F  G  G  Y  V  *  *  Q  V  E  G  L  F  C  M  N  E  I  Y  E  F  S  L  T  N  S  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22196" stop="22274"/>
                    <exon start="22368" stop="22568"/>
                    <exon start="22905" stop="22947"/>
                    <exon start="23052" stop="23130"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GDAKIHLDTFLSVFNISGLPGEYYHNTGKLSNDGDRFVDGAIIAAARTLPTWSDGDLPPIPSLERKAVKELQEECHQMLAEFPTTSDEDQKILDSMPECRRTFEAAIKYRLHRKLLIEKVIQALDIYQDRILF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="73449" PGL_stop="69624"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73449" e_stop="73372"/>
            <exon e_start="71959" e_stop="71855"/>
            <exon e_start="71767" e_stop="71239"/>
            <exon e_start="70589" e_stop="70484"/>
            <exon e_start="70167" e_stop="69624"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.827" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.842" e_score="1.000"/>
          <exon-intron don_prob="0.882" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.915" acc_prob="0.843" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73449" e_stop="73372" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.827" acc_prob="0.972">
            <gDNA_intron_boundary i_start="73371" i_stop="71960" i_length="1412"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71959" e_stop="71855" e_length="105"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.842">
            <gDNA_intron_boundary i_start="71854" i_stop="71768" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71767" e_stop="71239" e_length="529"/>
          </exon>
          <intron i_serial="3" don_prob="0.882" acc_prob="0.000">
            <gDNA_intron_boundary i_start="71238" i_stop="70590" i_length="649"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70589" e_stop="70484" e_length="106"/>
          </exon>
          <intron i_serial="4" don_prob="0.915" acc_prob="0.843">
            <gDNA_intron_boundary i_start="70483" i_stop="70168" i_length="316"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="70167" e_stop="69624" e_length="544"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73449" stop="73372"/>
              <exon start="71959" stop="71855"/>
              <exon start="71767" stop="71239"/>
              <exon start="70589" stop="70484"/>
              <exon start="70167" stop="69624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At3g47630" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTGTACGGATGCATGACTTGATTCAAGACATATTGGGATGGGAGAGGTTTTATCTCAGCGGTCGTTTGCAGAAACCA : GTGAACATTCTTACGGATAACTTGGATATAAAAAGCGTGAACAGCGTGAATCTGAAAGCTGCAACTTCTGCTGCTCTTCTCCTTTTGCCATCTAAATTCACGGAG : GAAGATTTATATGCCAAAATCTGTAGCCTCTCATATACAGGTGACTTGCGTATGCTTTTTGCAGAGGACAAAAATAAGGTAGATTTGACATTTGAGTGGGTTTAAATTTTAAAATTTTGTGGCCCTGACTGTACCACATGGAAGTATCAATCTACAAGTAAGTTTATAGTGTAATTGGGTAGTTTCTCAATTTTATAGTTTTATATTACTTCCAGCGGATCAATGAATATCAGTTAATTTGCATCTCATATCTACAAAATATCCTTTTTGGACTAGAATTTGAATCTCAACTTTTAGCATAGTATCTCATAGTGCATTGGCAACTTTCATGCCACATTAATTGATTGAATTGATTCTTCCATTCCGTGTACATGAATTTCTTCATTGCATATTGATCCAGGTGAACAAAATTGTACAAGGACAGTTCCATTTATTTGAGGAAATGTATAAGCCATTTCTGGAAGAATACGAGGCCAAAAACTTGTTGAGATTTTCAGTAGCTGGTGATAAGCAAGTAAACATATTTCAG : GATTGTGGATTATCTGCTGCTTCCACCTTGGTTTCTTCTCTTCCTTCATCAATCAGAAGTGAGATGGCCATGAAACTTGGAGAAAAGAGAATTCTGGATGACTCTG : GTAGAGTTAGACAACAAATAGTGATTGGTTCAAAAGAACAGGCTGCTGAGTGCATGCAGAGGCTAGTTAGACGAAAGGTTATGTTTTCTAGCACAAGGCAGGCTGTTGCAGGTTTATTGACTGCTGGTGCTGTTCATGGAGTCAGATATGTAGCAAACAAGATGCGCAAGGCTTGGAAATCTTGGGTGTAATTGTTTCCTGTTTTTGGGTGACATCACGTCTTTTAACTGGTTCAGACATGGGGATATAGCCACAACCACAGTTACACCTAATGACATGCGGTTCAACCATGGAGTTCTTAGCATGGATAGAGTTTGCCGACTCTCCTGCTGCTTTTTCAAAATAAGACAAATAGAATTTGAGGGGGGAAATAACCAACAACCCATCAAAAAATTTCTTCTGAAAGTTTTCTGTTCACTTGTATTCTTTTCTTTTATTTATTTCAAAGGTGGGAAGAGTTCTTCAGGGAAGGTCGAGCTGTTGTATGTTTAGAACATCCTGGTGAAAAGAAGTTAATCAATGTTTCTAAACAAGGAATTGCTAT</gDNA_template>
            <first_frame> V  V  R  M  H  D  L  I  Q  D  I  L  G  W  E  R  F  Y  L  S  G  R  L  Q  K  P  :  V  N  I  L  T  D  N  L  D  I  K  S  V  N  S  V  N  L  K  A  A  T  S  A  A  L  L  L  L  P  S  K  F  T  E  :  E  D  L  Y  A  K  I  C  S  L  S  Y  T  G  D  L  R  M  L  F  A  E  D  K  N  K  V  D  L  T  F  E  W  V  *  I  L  K  F  C  G  P  D  C  T  T  W  K  Y  Q  S  T  S  K  F  I  V  *  L  G  S  F  S  I  L  *  F  Y  I  T  S  S  G  S  M  N  I  S  *  F  A  S  H  I  Y  K  I  S  F  L  D  *  N  L  N  L  N  F  *  H  S  I  S  *  C  I  G  N  F  H  A  T  L  I  D  *  I  D  S  S  I  P  C  T  *  I  S  S  L  H  I  D  P  G  E  Q  N  C  T  R  T  V  P  F  I  *  G  N  V  *  A  I  S  G  R  I  R  G  Q  K  L  V  E  I  F  S  S  W  *  *  A  S  K  H  I  S   : G  L  W  I  I  C  C  F  H  L  G  F  F  S  S  F  I  N  Q  K  *  D  G  H  E  T  W  R  K  E  N  S  G  *  L  W :   *  S  *  T  T  N  S  D  W  F  K  R  T  G  C  *  V  H  A  E  A  S  *  T  K  G  Y  V  F  *  H  K  A  G  C  C  R  F  I  D  C  W  C  C  S  W  S  Q  I  C  S  K  Q  D  A  Q  G  L  E  I  L  G  V  I  V  S  C  F  W  V  T  S  R  L  L  T  G  S  D  M  G  I  *  P  Q  P  Q  L  H  L  M  T  C  G  S  T  M  E  F  L  A  W  I  E  F  A  D  S  P  A  A  F  S  K  *  D  K  *  N  L  R  G  E  I  T  N  N  P  S  K  N  F  F  *  K  F  S  V  H  L  Y  S  F  L  L  F  I  S  K  V  G  R  V  L  Q  G  R  S  S  C  C  M  F  R  T  S  W  *  K  E  V  N  Q  C  F  *  T  R  N  C  Y </first_frame>
            <second_frame>  L  Y  G  C  M  T  *  F  K  T  Y  W  D  G  R  G  F  I  S  A  V  V  C  R  N  Q :   *  T  F  L  R  I  T  W  I  *  K  A  *  T  A  *  I  *  K  L  Q  L  L  L  L  F  S  F  C  H  L  N  S  R  R :   K  I  Y  M  P  K  S  V  A  S  H  I  Q  V  T  C  V  C  F  L  Q  R  T  K  I  R  *  I  *  H  L  S  G  F  K  F  *  N  F  V  A  L  T  V  P  H  G  S  I  N  L  Q  V  S  L  *  C  N  W  V  V  S  Q  F  Y  S  F  I  L  L  P  A  D  Q  *  I  S  V  N  L  H  L  I  S  T  K  Y  P  F  W  T  R  I  *  I  S  T  F  S  I  V  S  H  S  A  L  A  T  F  M  P  H  *  L  I  E  L  I  L  P  F  R  V  H  E  F  L  H  C  I  L  I  Q  V  N  K  I  V  Q  G  Q  F  H  L  F  E  E  M  Y  K  P  F  L  E  E  Y  E  A  K  N  L  L  R  F  S  V  A  G  D  K  Q  V  N  I  F  Q  :  D  C  G  L  S  A  A  S  T  L  V  S  S  L  P  S  S  I  R  S  E  M  A  M  K  L  G  E  K  R  I  L  D  D  S   : G  R  V  R  Q  Q  I  V  I  G  S  K  E  Q  A  A  E  C  M  Q  R  L  V  R  R  K  V  M  F  S  S  T  R  Q  A  V  A  G  L  L  T  A  G  A  V  H  G  V  R  Y  V  A  N  K  M  R  K  A  W  K  S  W  V  *  L  F  P  V  F  G  *  H  H  V  F  *  L  V  Q  T  W  G  Y  S  H  N  H  S  Y  T  *  *  H  A  V  Q  P  W  S  S  *  H  G  *  S  L  P  T  L  L  L  L  F  Q  N  K  T  N  R  I  *  G  G  K  *  P  T  T  H  Q  K  I  S  S  E  S  F  L  F  T  C  I  L  F  F  Y  L  F  Q  R  W  E  E  F  F  R  E  G  R  A  V  V  C  L  E  H  P  G  E  K  K  L  I  N  V  S  K  Q  G  I  A   </second_frame>
            <third_frame>   C  T  D  A  *  L  D  S  R  H  I  G  M  G  E  V  L  S  Q  R  S  F  A  E  T   : S  E  H  S  Y  G  *  L  G  Y  K  K  R  E  Q  R  E  S  E  S  C  N  F  C  C  S  S  P  F  A  I  *  I  H  G   : G  R  F  I  C  Q  N  L  *  P  L  I  Y  R  *  L  A  Y  A  F  C  R  G  Q  K  *  G  R  F  D  I  *  V  G  L  N  F  K  I  L  W  P  *  L  Y  H  M  E  V  S  I  Y  K  *  V  Y  S  V  I  G  *  F  L  N  F  I  V  L  Y  Y  F  Q  R  I  N  E  Y  Q  L  I  C  I  S  Y  L  Q  N  I  L  F  G  L  E  F  E  S  Q  L  L  A  *  Y  L  I  V  H  W  Q  L  S  C  H  I  N  *  L  N  *  F  F  H  S  V  Y  M  N  F  F  I  A  Y  *  S  R  *  T  K  L  Y  K  D  S  S  I  Y  L  R  K  C  I  S  H  F  W  K  N  T  R  P  K  T  C  *  D  F  Q  *  L  V  I  S  K  *  T  Y  F  R :   I  V  D  Y  L  L  L  P  P  W  F  L  L  F  L  H  Q  S  E  V  R  W  P  *  N  L  E  K  R  E  F  W  M  T  L  :  V  E  L  D  N  K  *  *  L  V  Q  K  N  R  L  L  S  A  C  R  G  *  L  D  E  R  L  C  F  L  A  Q  G  R  L  L  Q  V  Y  *  L  L  V  L  F  M  E  S  D  M  *  Q  T  R  C  A  R  L  G  N  L  G  C  N  C  F  L  F  L  G  D  I  T  S  F  N  W  F  R  H  G  D  I  A  T  T  T  V  T  P  N  D  M  R  F  N  H  G  V  L  S  M  D  R  V  C  R  L  S  C  C  F  F  K  I  R  Q  I  E  F  E  G  G  N  N  Q  Q  P  I  K  K  F  L  L  K  V  F  C  S  L  V  F  F  S  F  I  Y  F  K  G  G  K  S  S  S  G  K  V  E  L  L  Y  V  *  N  I  L  V  K  R  S  *  S  M  F  L  N  K  E  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71427" stop="71239"/>
                    <exon start="70589" stop="70484"/>
                    <exon start="70167" stop="69977"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIELILPFRVHEFLHCILIQVNKIVQGQFHLFEEMYKPFLEEYEAKNLLRFSVAGDKQVNIFQDCGLSAASTLVSSLPSSIRSEMAMKLGEKRILDDSGRVRQQIVIGSKEQAAECMQRLVRRKVMFSSTRQAVAGLLTAGAVHGVRYVANKMRKAWKSWV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02SLm0073G04.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73449" stop="73372"/>
                    <exon start="71959" stop="71855"/>
                    <exon start="71767" stop="71663"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVRMHDLIQDILGWERFYLSGRLQKPVNILTDNLDIKSVNSVNLKAATSAALLLLPSKFTEEDLYAKICSLSYTGDLRMLFAEDKNKVDLTFEWV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 200 chains have been computed
$ 
$ memory statistics:
$ 6840 bytes spliced alignments in total
$ 3 spliced alignments have been stored
$ 2280 bytes was the average size of a spliced alignment
$ 8168 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2722 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 200 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 11:36:55
-->
