<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:06:23"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249644" ref_strand="+" ref_description="SGN-E249644 [cLEF-56-D1]">
      <seq>tcgtgccgccccttttggctgtcttaaagaactctctatttactcagcgtggaaattcaggggaatttgattatggggagttttatggttcttgtgagttgaatttggagagtcttttgttgactggaattaaatcaggggataagggggttggttttttatggaggaattgcaaaaaggtaacaactttgaagctgataagctgtgaaggggttggtgatcaaggttcttttttaacatttcttcagtgtttagagggtcttcaagaattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="1816" stop="953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1525" g_stop="1253" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E249644" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1525" e_stop="1253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGGTAACCCCTTTTGGCTGTCTTAAAGAACTCTCTATTTACTCAGC-TGGAAATTCAGGGGAATTTGATTATGGGGAGTTTTATGGTTCTTGTGAGTTGAATTTGGAGAGTCTTTTGTTGACTGGAATTAAATCAGGGGATAAGGGGGTTGGTTTTTTATGGAGGAATTGCAAAAAGGTAACAACTTTGAAGCTGATAAGCTGTGAAGGGGTTGGTGATCAAGGTTCTTTTTTAACATTTCTTCAGTGTTTAGAGGGTCTTCAAGAATTGG</genome_strand>
        <mrna_strand>TC-GTGCCGCCCCTTTTGGCTGTCTTAAAGAACTCTCTATTTACTCAGCGTGGAAATTCAGGGGAATTTGATTATGGGGAGTTTTATGGTTCTTGTGAGTTGAATTTGGAGAGTCTTTTGTTGACTGGAATTAAATCAGGGGATAAGGGGGTTGGTTTTTTATGGAGGAATTGCAAAAAGGTAACAACTTTGAAGCTGATAAGCTGTGAAGGGGTTGGTGATCAAGGTTCTTTTTTAACATTTCTTCAGTGTTTAGAGGGTCTTCAAGAATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367186" ref_strand="+" ref_description="SGN-E367186 [cLPT-5-A5]">
      <seq>catgtatctgcgtctttcctccattaactgttttgtgacaatgtcagattttctttgaattcttgcctgcattccttttgaagaaaaatcaagaacttatccatctttttgaagttacacctgtattctaaggcatatttacaagaaataatgaaatttttattttcaagaatatattgacattgcaaatataaagatattcaagaaaactttctttctccaaaaaattctgttgtttttcgtactgtgtgttgaagatgttctagaatttgtttttgaagctttttatcttgtatgatttcagaagggttggtcgttgtagtcataggattgcatgcattactcaactaataagccgttctggcggtttgtgttcattggtttgcgtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="63447" stop="64619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63747" g_stop="64057" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64058" i_stop="64239" i_length="182">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64240" g_stop="64319" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="391" r_length="80" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E367186" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63747" e_stop="64057"/>
          <exon e_start="64240" e_stop="64319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGTATCTGCGTCTTTCCTCCATTAACTGTTTTGTGACAATGTCAGATTTTCTTTGAATTCTTGCCTGCATTCCTTTT-AAGAAAAATCAAGAACTTATCCATCTTTTTGAAGTTACACCTGTATTCTTAAGGCATATTTACAGGAAATAATGAAATTGTTATTTTCAAGAATATATTGACATTGCAAATATAAAGAAATTCAAGAAAACTTTCTTTCTCCAAAAAATTCTGTTGTTTTTCGTACTGTGTGTTGAAGATGTTCTAGAATTTGTTTTTGAGCCTTTTTATCTTGTATGATTTCAGAAGGGTTGTTGAGGAGTTGGTTTTAACAGCCGTAGGAATTGAATGTTGTGGAGTTGTTCTTGAAGTCCCACTCACACAACTTTTAAAGATAGTGTACTGATGTTCTTGATGCTGACATCATCTTTTCTATTGTATTGATGCCTGTACATAATTTCTTTGCCCAACAACTATGTGTACATAACTTGGAATGGTCGTTGTAGCCATAGGATTGCATGCATTACTCAACTAATAGGCCGCTCTGGCGGTTTGTATTCATTGGTTTGCATATA</genome_strand>
        <mrna_strand>CATGTATCTGCGTCTTTCCTCCATTAACTGTTTTGTGACAATGTCAGATTTTCTTTGAATTCTTGCCTGCATTCCTTTTGAAGAAAAATCAAGAACTTATCCATCTTTTTGAAGTTACACCTGTATTC-TAAGGCATATTTACAAGAAATAATGAAATTTTTATTTTCAAGAATATATTGACATTGCAAATATAAAGATATTCAAGAAAACTTTCTTTCTCCAAAAAATTCTGTTGTTTTTCGTACTGTGTGTTGAAGATGTTCTAGAATTTGTTTTTGAAGCTTTTTATCTTGTATGATTTCAGAAGGGTT......................................................................................................................................................................................GGTCGTTGTAGTCATAGGATTGCATGCATTACTCAACTAATAAGCCGTTCTGGCGGTTTGTGTTCATTGGTTTGCGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E710024" ref_strand="+" ref_description="SGN-E710024 [FA53DH11]">
      <seq>tgggatttgagatctgttttcgttttcaagaatttcagatgcttttcgcagtctcagaacggattaagtcaaaggttggaaacttctgctggattttctcaactgttccggccgttgatagcccacaagaaacaccagggtagaatgagggatgcccagcctggatcacatactgtgagcgtgaggtctcatggtgtgacggttgcatcatatacagtgaggtcccatggtataacagtggcaaggactcatttaaatgactggatgatcctaatactacttttggggatagttgtccttctgaatgttatccatccgttttaccggtttgttgggaaagacatgatggaagacctcaagtatcctttaaaaagtaatactgtacctttttgggctgtgccagtgtatgctgttctgctgcctatggttgtatttctgctcatttattttcggcgaagagatgtctatgatcttcatcatgccatactgggccttttgttctctgttgtggtaacagctgttatcacaggtgctataaaagatgcagttggaaggcctaggccagacttcttctggcgctgttttccagatggaaaggaagtttacgataaatggggagatgttgtatgccatggtgacaaaaatgttgtcagggaagggcataaaagttttccaagtggtcatacctccttgtcctttgctggtcttggctttctatcgctttatttatctggcaagatacaagtctttgactgtagaggacatgttgctaaactgtgtctcgtattacttccacttcttcttgcatctctggttgccatttctcgggtggatgactattggcatcattggcaggatgtgtttgctggaggtctgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="76617" stop="73745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76317" g_stop="76261" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76260" i_stop="75993" i_length="268">
            <donor d_prob="0.912" d_score="1.00"/>
            <acceptor a_prob="0.745" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75992" g_stop="75912" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="138" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75911" i_stop="75226" i_length="686">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75225" g_stop="74962" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="402" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74961" i_stop="74872" i_length="90">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.167" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74871" g_stop="74784" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="490" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74783" i_stop="74681" i_length="103">
            <donor d_prob="0.941" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74680" g_stop="74571" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="600" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74570" i_stop="74462" i_length="109">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74461" g_stop="74371" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="691" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="74370" i_stop="74234" i_length="137">
            <donor d_prob="0.301" d_score="1.00"/>
            <acceptor a_prob="0.223" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="74233" g_stop="74045" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="880" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E710024" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76317" e_stop="76261"/>
          <exon e_start="75992" e_stop="75912"/>
          <exon e_start="75225" e_stop="74962"/>
          <exon e_start="74871" e_stop="74784"/>
          <exon e_start="74680" e_stop="74571"/>
          <exon e_start="74461" e_stop="74371"/>
          <exon e_start="74233" e_stop="74045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGATTTGAGATCTGTTTTCGTTTTCAAGAATTTCAGATGCTTTTCGCAGTCTCAGGTGCGTAAGGATTATCTGCTATGTTTTGATAACGGCGACTGTAATTTATGCCCATGTTTGATCTAACGCTTTATCTATTCCCAAGATTGGTGACTTTACTCAAATGTTATGGCTAATTCTCCTGTACTGGAAAGTGTCAAGTTCTTAGATTTAGTTGCACTGTAGTAGTTGCAAAATGCTAAAAGGAATACTTATGATGTTAATGATATTTAGCTTTTTGCTATTGAGGCAATGATAAGTTTGATTTTTTTTTTCGGCTTTCAATCAGAACGGATTAAGTCAAAGGTTGGAAACTTCTGCTGGATTTTCTCAACTGTTCCGGCCGTTGATAGCCCACAAGAAACACCAGGTATATATTTCTCACATTTGATGTAGTTAAAGGAATTGGGATGAAAGTGAGTAGCTAGAATGGGTTTTTATTCCATCCATAGCATATTATATACAAGACTTGAGATGAAAGAAGGGGATGGATAAGTTTGGAAATGATTTTGGGTGAGATAATTGCGAACTCAATAGATTGGAACGTCCTGTGAACTATCTTGAGTCACGCACATCTAGTGTGAACAAATAAAATGAACTTTGGCTAATTTCAAACTGCCATTTGCACCTAGACAAAACTATTTTTAGATGGATCATGAGCCATGTATTCAATTTATGGGAATATGCTTGAGTTCTTTTGTAGGCATGTCATGCTTGCTTTACCATTCTGACCAACGTCTACCCCTGAATACTGATACAGTCTACCTTAGGATGTTGTTTTGTTTATTTCTATAAACAAAATTATAGTCTCGACTATATAAAGCACACTTCTGTAGATGTGGCAATCTGTTTTTTTACCTTGTAGGATGAAATAAAAATCCACCTGCACATATAACAGATGTCTAATGCAAATGACCTTGTTATAGCTCTGAAAAATTTAGAGAAGGAGATTATCTTGTGTTTATATATGCAGCTTATTACAAATTTAGAACAAATAAGTCTTTGCAATCATATTAAAAGAATACTCAATTTCTTACTTCTACATGTTCTTAGCAGGGTAGAATGAGGGATGCCCAGCCTGGATCACATACTGTGAGCGTGAGGTCTCATGGTGTGACGGTTGCATCATATACAGTGAGGTCCCATGGTATAACAGTGGCAAGGACTCATTTAAATGACTGGATGATCCTAATACTACTTTTGGGGATAGTTGTCCTTCTGAATGTTATCCATCCGTTTTACCGGTTTGTTGGGAAAGACATGATGGAAGACCTCAAGTATCCTTTAAAAAGTAATACTGTACCTTTTTGGGCTGTGCCAGTGAGTTGATCCTCATTTTTCATTCAGTAGCTACAAAATTACTTTATAGAGGCGATTAGTACCTCATATTCAGATTTCTAAATTTATCAGGTGTATGCTGTTCTGCTGCCTATGGTTGTATTTCTGCTCATTTATTTTCGGCGAAGAGATGTCTATGATCTTCATCATGCCATACTGGGTAAACTATTCTTTGGATTTGGCTAGTTTTAGTGGAAGTTGTTTATAATGTCCTCACCATAAAAGCTTTCTGGTTGTCGTCCTCTAATATGTTGTATTGGCAGGCCTTTTGTTCTCTGTTGTGGTAACAGCTGTTATCACAGGTGCTATAAAAGATGCAGTTGGAAGGCCTAGGCCAGACTTCTTCTGGCGCTGTTTTCCAGATGGAAAGGAAGTATGTTTGCCATGATGGTTATACTTTATGTTTCTAGTTGTAGTCTAAGGCTTCTCAGTTTTGGGGAGTAGTATTTTAACAGCGCCTTTAAATATTGATTGATCAACAGGTTTACGATAAATGGGGAGATGTTGTATGCCATGGTGACAAAAATGTTGTCAGGGAAGGGCATAAAAGTTTTCCAAGTGGTCATACCTCCTGTAAGTAGAATGCATGTTCATTAACGTTGCCTTGTAGAGCAAAAGAACGCGTGGAGACAGACTTGAAATTTACAGCATACGTATTTTGATTCTTTCTCGTCTTCTCAACCTTTTGAGGATTTCGGATCAACTTGCAGTGTCCTTTGCTGGTCTTGGCTTTCTATCGCTTTATTTATCTGGCAAGATACAAGTCTTTGACTGTAGAGGACATGTTGCTAAACTGTGTCTCGTATTACTTCCACTTCTTCTTGCATCTCTGGTTGCCATTTCTCGGGTGGATGACTATTGGCATCATTGGCAGGATGTGTTTGCTGGAGGTCTGATTG</genome_strand>
        <mrna_strand>TGGGATTTGAGATCTGTTTTCGTTTTCAAGAATTTCAGATGCTTTTCGCAGTCTCAG............................................................................................................................................................................................................................................................................AACGGATTAAGTCAAAGGTTGGAAACTTCTGCTGGATTTTCTCAACTGTTCCGGCCGTTGATAGCCCACAAGAAACACCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAGAATGAGGGATGCCCAGCCTGGATCACATACTGTGAGCGTGAGGTCTCATGGTGTGACGGTTGCATCATATACAGTGAGGTCCCATGGTATAACAGTGGCAAGGACTCATTTAAATGACTGGATGATCCTAATACTACTTTTGGGGATAGTTGTCCTTCTGAATGTTATCCATCCGTTTTACCGGTTTGTTGGGAAAGACATGATGGAAGACCTCAAGTATCCTTTAAAAAGTAATACTGTACCTTTTTGGGCTGTGCCA..........................................................................................GTGTATGCTGTTCTGCTGCCTATGGTTGTATTTCTGCTCATTTATTTTCGGCGAAGAGATGTCTATGATCTTCATCATGCCATACTGG.......................................................................................................GCCTTTTGTTCTCTGTTGTGGTAACAGCTGTTATCACAGGTGCTATAAAAGATGCAGTTGGAAGGCCTAGGCCAGACTTCTTCTGGCGCTGTTTTCCAGATGGAAAGGAA.............................................................................................................GTTTACGATAAATGGGGAGATGTTGTATGCCATGGTGACAAAAATGTTGTCAGGGAAGGGCATAAAAGTTTTCCAAGTGGTCATACCTCCT.........................................................................................................................................TGTCCTTTGCTGGTCTTGGCTTTCTATCGCTTTATTTATCTGGCAAGATACAAGTCTTTGACTGTAGAGGACATGTTGCTAAACTGTGTCTCGTATTACTTCCACTTCTTCTTGCATCTCTGGTTGCCATTTCTCGGGTGGATGACTATTGGCATCATTGGCAGGATGTGTTTGCTGGAGGTCTGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E718708" ref_strand="+" ref_description="SGN-E718708 [FC05CB03]">
      <seq>gggatttgagatctgttttcgttttcaagaatttcagatgcttttcgcactctcccaacggattaagtcaaaggttggaaacttctgatggattttctcaactgttccggccgttgatagcccacaataaacaccagcagggtaaaatgagggatgcccagcctggatcacatactgtgagcgtgaggtctcatggtgtgacggttgcatcatatacagtgaggtcccatggtataacagtggcaaggactcatttaaatgactggatgatcctaatactacttttggggatagttgtccttctgaatgttatccatccgttttaccggtttgttgggaaagacatgatggaagacctcaagtatcctttaaaaagtaatactgtacctttttgggctgtgccagtgtatgctgttctgctgcctatggttgtatttctgctcatttattttcggcgaacagatgtctatgatcttcatcatgccatactgggcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="76616" stop="74483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76316" g_stop="76261" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76260" i_stop="75993" i_length="268">
            <donor d_prob="0.912" d_score="0.94"/>
            <acceptor a_prob="0.745" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75992" g_stop="75912" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="137" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75911" i_stop="75229" i_length="683">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75228" g_stop="74962" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="404" r_length="267" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74961" i_stop="74872" i_length="90">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.167" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74871" g_stop="74784" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="492" r_length="88" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74783" i_stop="74681" i_length="103">
            <donor d_prob="0.941" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74680" g_stop="74676" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="497" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E718708" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76316" e_stop="76261"/>
          <exon e_start="75992" e_stop="75912"/>
          <exon e_start="75228" e_stop="74962"/>
          <exon e_start="74871" e_stop="74784"/>
          <exon e_start="74680" e_stop="74676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATTTGAGATCTGTTTTCGTTTTCAAGAATTTCAGATGCTTTTCGCAGTCTCAGGTGCGTAAGGATTATCTGCTATGTTTTGATAACGGCGACTGTAATTTATGCCCATGTTTGATCTAACGCTTTATCTATTCCCAAGATTGGTGACTTTACTCAAATGTTATGGCTAATTCTCCTGTACTGGAAAGTGTCAAGTTCTTAGATTTAGTTGCACTGTAGTAGTTGCAAAATGCTAAAAGGAATACTTATGATGTTAATGATATTTAGCTTTTTGCTATTGAGGCAATGATAAGTTTGATTTTTTTTTTCGGCTTTCAATCAGAACGGATTAAGTCAAAGGTTGGAAACTTCTGCTGGATTTTCTCAACTGTTCCGGCCGTTGATAGCCCACAAGAAACACCAGGTATATATTTCTCACATTTGATGTAGTTAAAGGAATTGGGATGAAAGTGAGTAGCTAGAATGGGTTTTTATTCCATCCATAGCATATTATATACAAGACTTGAGATGAAAGAAGGGGATGGATAAGTTTGGAAATGATTTTGGGTGAGATAATTGCGAACTCAATAGATTGGAACGTCCTGTGAACTATCTTGAGTCACGCACATCTAGTGTGAACAAATAAAATGAACTTTGGCTAATTTCAAACTGCCATTTGCACCTAGACAAAACTATTTTTAGATGGATCATGAGCCATGTATTCAATTTATGGGAATATGCTTGAGTTCTTTTGTAGGCATGTCATGCTTGCTTTACCATTCTGACCAACGTCTACCCCTGAATACTGATACAGTCTACCTTAGGATGTTGTTTTGTTTATTTCTATAAACAAAATTATAGTCTCGACTATATAAAGCACACTTCTGTAGATGTGGCAATCTGTTTTTTTACCTTGTAGGATGAAATAAAAATCCACCTGCACATATAACAGATGTCTAATGCAAATGACCTTGTTATAGCTCTGAAAAATTTAGAGAAGGAGATTATCTTGTGTTTATATATGCAGCTTATTACAAATTTAGAACAAATAAGTCTTTGCAATCATATTAAAAGAATACTCAATTTCTTACTTCTACATGTTCTTAGCAGGGTAGAATGAGGGATGCCCAGCCTGGATCACATACTGTGAGCGTGAGGTCTCATGGTGTGACGGTTGCATCATATACAGTGAGGTCCCATGGTATAACAGTGGCAAGGACTCATTTAAATGACTGGATGATCCTAATACTACTTTTGGGGATAGTTGTCCTTCTGAATGTTATCCATCCGTTTTACCGGTTTGTTGGGAAAGACATGATGGAAGACCTCAAGTATCCTTTAAAAAGTAATACTGTACCTTTTTGGGCTGTGCCAGTGAGTTGATCCTCATTTTTCATTCAGTAGCTACAAAATTACTTTATAGAGGCGATTAGTACCTCATATTCAGATTTCTAAATTTATCAGGTGTATGCTGTTCTGCTGCCTATGGTTGTATTTCTGCTCATTTATTTTCGGCGAAGAGATGTCTATGATCTTCATCATGCCATACTGGGTAAACTATTCTTTGGATTTGGCTAGTTTTAGTGGAAGTTGTTTATAATGTCCTCACCATAAAAGCTTTCTGGTTGTCGTCCTCTAATATGTTGTATTGGCAGGCCTT</genome_strand>
        <mrna_strand>GGGATTTGAGATCTGTTTTCGTTTTCAAGAATTTCAGATGCTTTTCGCACTCTCCC............................................................................................................................................................................................................................................................................AACGGATTAAGTCAAAGGTTGGAAACTTCTGATGGATTTTCTCAACTGTTCCGGCCGTTGATAGCCCACAATAAACACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGGTAAAATGAGGGATGCCCAGCCTGGATCACATACTGTGAGCGTGAGGTCTCATGGTGTGACGGTTGCATCATATACAGTGAGGTCCCATGGTATAACAGTGGCAAGGACTCATTTAAATGACTGGATGATCCTAATACTACTTTTGGGGATAGTTGTCCTTCTGAATGTTATCCATCCGTTTTACCGGTTTGTTGGGAAAGACATGATGGAAGACCTCAAGTATCCTTTAAAAAGTAATACTGTACCTTTTTGGGCTGTGCCA..........................................................................................GTGTATGCTGTTCTGCTGCCTATGGTTGTATTTCTGCTCATTTATTTTCGGCGAACAGATGTCTATGATCTTCATCATGCCATACTGG.......................................................................................................GCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203802" ref_strand="+" ref_description="SGN-E203802 [cLEC-17-F2]">
      <seq>caaggtgataatttgagtgcaatcggagggagtgctggagatgccaaacaaacattgcattgcccaggtggttcagtgccctagtctatggatttggagacgagctcttcatttgggtcgaccagttcttccatttctatgtctaatatgcctgctattggagttcaagccgaggatggtggcgtcaatttgcaggacaaaagagtgagagtgccctcatcatcagcttcaatagagagcgatagtatcatgggaggtgcgggttttcaacctaaagttggaattcaccaagaaccacttattcaagttatgtccagtatggcctcccacagtctcttcgaagcagaaggctccaatgccagtccctctctcattcagacgccaaaaatggttcaggtttgtgggtatccactacctcagacattggatgggaagcagccccaacctggaattcagtatgttcatggcggtgcctgttatgtacctcattatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="82246" stop="84276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82546" g_stop="82784" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82785" i_stop="83720" i_length="936">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83721" g_stop="83976" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="495" r_length="256" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E203802" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82546" e_stop="82784"/>
          <exon e_start="83721" e_stop="83976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGTGATAATTTGAGTGCAATCGGAGGGAGTGCTGGAGATGCCAAGCAAACATTGGATTTTGGTGGTGGTTCAGTGCCCGAGTCTATGGTTTTGGAGACGAGCTCTTCATTTGGGTCGACCAGTTCTTCCATTTCTATGTCTAATATGCCTGCTATTGGAGTTCAAGCCGAGGATGGTGGCGTCAATTTGCAGGACAAAAGAGTGAGAGTGCCCTCATCATCAGCTTCAATAGAGAGGTACTATTTTCTTTTTTTCTATTTGATGTTACTGTTTGTTTTCTAGTTATGCTATTGGAGTCATTGATGCTATGTAGGTTAACAAAAGTTTAGATTTTTGGTTGACCTACTGGTTTTATGGGTTGAGTTCTGCACCAATACCTGTGCTATGTAAGTAAGTACTTTTTCTTTTTTATGACAACGGAAATCCGCAGCCGCTAACTTTTGGGTGCGTACAGGGTAAACCTCGTTTCTATGTCATAGCTCGCAAACCACATAGGAGAGCTAATCCGCACTAGGCAAGCCTTGTGCGATGAGCTCGACCCAGAAGGCAAACCCCTTGTTTTCGCTGGCAAGGGGTTTCAAACTTGAGACCTCCAACATGGAAGTCCCAAGATCAAGTATTTTTGTTTCAATTGGATTCTACTTCCCTGTGACAATAGAAGAGAAAGGTAGTAAGGTGACGAGGAACATATTGATTTATATTTTTGACTTACAGGGTCTTTTTTTTTCACTTTGTTAAGAGTTACAAATTAGTGTAATGAATCCACAGTAGAATTTCATTGGGGATTAACTGACAGCCCTCCCCAAAAGGAAGAGAAATCATTAGTTTCTACAGTGTAGTATGCTTTGGCCTGTATTCTAGCTTGTTATGCTATTTGTATGGTTACTGTAGTGTTATGAACTGACAGTCTGTTTTCTGGATTGCTTTAGTTCAGTTTATTCACTTGTAAGCCGCTCTTTTCCTCTTTATTATTCACAGAAGAAGACTTCTAAGGTTTCTTGAGCTGATGAATCTATATGCTCAAGTTAGTGGTGGCGTTTTCATTGATTGCTCGTTGAGAATACACTTTAACACTAAAAATAAGATACATGCATTTATTTGGATCTGTTCCTTACATTAGGTTGCCTCTAAAATCTGTACTTATGGGCCTCTGTATTGGTTAATTTCCACAGCGATAGTATCATGGGAGGTGCGGGTTTTCAACCTAAAGTTGGAATTCACCAAGAACCACTTATTCAAGTTATGTCCAGTATGGCCTCCCACAGTCTCTTCGAAGCAGAAGGCTCCAATGCCAGTCCCTCTCTCATTCAGACGCCAAAAATGGTTCAGGTTTCTGGGTATCCACTACCTCAGACATTGGATGGGAAGCAGCCCCAACCTGGAATTCAGTATGTTCATGGCGGTGCCTGTTATGTACCTCATTATCCT</genome_strand>
        <mrna_strand>CAAGGTGATAATTTGAGTGCAATCGGAGGGAGTGCTGGAGATGCCAAACAAACATTGCATTGCCCAGGTGGTTCAGTGCCCTAGTCTATGGATTTGGAGACGAGCTCTTCATTTGGGTCGACCAGTTCTTCCATTTCTATGTCTAATATGCCTGCTATTGGAGTTCAAGCCGAGGATGGTGGCGTCAATTTGCAGGACAAAAGAGTGAGAGTGCCCTCATCATCAGCTTCAATAGAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATAGTATCATGGGAGGTGCGGGTTTTCAACCTAAAGTTGGAATTCACCAAGAACCACTTATTCAAGTTATGTCCAGTATGGCCTCCCACAGTCTCTTCGAAGCAGAAGGCTCCAATGCCAGTCCCTCTCTCATTCAGACGCCAAAAATGGTTCAGGTTTGTGGGTATCCACTACCTCAGACATTGGATGGGAAGCAGCCCCAACCTGGAATTCAGTATGTTCATGGCGGTGCCTGTTATGTACCTCATTATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427944" ref_strand="+" ref_description="SGN-E427944 [STM-49-I24]">
      <seq>ctcatcatcagcttcaatagagagcgatagtatcgttggaagtacgggttttcaacctaaagttggaattcaccaagagccacttattcaagttatgtccagtatggcttcccacagtctcttcgaagcagaaggctccaatgccaatccctctctcattcagacgccaaaaatggttcaggtttctgggtatccactacctcaaacattggatgggaagcacccccaacctggaatgcagtatgttcatggtggtgcctgttatgtacctcattatcctagcggtcctttgccagtatcatcctgttatccattttatcaggttcccatgcagcagccacaacaaactccttatcctctgaatcaacaatacccaatatacttggttcctatgcagcaaatgcaatctcacagtatgtcagtgttgcccaacattaatcatgcagcagtaatggcgtccaatcggccacccttgcatccacaaagtgtcataaaccctccatcagtagcttataaggaggtcatggcggctcaatcagtgcctgagtcgggttcaaaagtgtacacgactgtcccaacagcatcactacccattagtgcgccttctcagactcagcaacaatatactgtccttcctgaaccacagcttatttcccaacctgtctcaactgcatcagttcctgctgcaaatgatgcaaatgagtttgacgatgatcttgcatacnatcagatatataaatctcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="82461" stop="84742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82761" g_stop="82784" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82785" i_stop="83720" i_length="936">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83721" g_stop="84442" g_length="722"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="746" r_length="722" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E427944" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82761" e_stop="82784"/>
          <exon e_start="83721" e_stop="84442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATCATCAGCTTCAATAGAGAGGTACTATTTTCTTTTTTTCTATTTGATGTTACTGTTTGTTTTCTAGTTATGCTATTGGAGTCATTGATGCTATGTAGGTTAACAAAAGTTTAGATTTTTGGTTGACCTACTGGTTTTATGGGTTGAGTTCTGCACCAATACCTGTGCTATGTAAGTAAGTACTTTTTCTTTTTTATGACAACGGAAATCCGCAGCCGCTAACTTTTGGGTGCGTACAGGGTAAACCTCGTTTCTATGTCATAGCTCGCAAACCACATAGGAGAGCTAATCCGCACTAGGCAAGCCTTGTGCGATGAGCTCGACCCAGAAGGCAAACCCCTTGTTTTCGCTGGCAAGGGGTTTCAAACTTGAGACCTCCAACATGGAAGTCCCAAGATCAAGTATTTTTGTTTCAATTGGATTCTACTTCCCTGTGACAATAGAAGAGAAAGGTAGTAAGGTGACGAGGAACATATTGATTTATATTTTTGACTTACAGGGTCTTTTTTTTTCACTTTGTTAAGAGTTACAAATTAGTGTAATGAATCCACAGTAGAATTTCATTGGGGATTAACTGACAGCCCTCCCCAAAAGGAAGAGAAATCATTAGTTTCTACAGTGTAGTATGCTTTGGCCTGTATTCTAGCTTGTTATGCTATTTGTATGGTTACTGTAGTGTTATGAACTGACAGTCTGTTTTCTGGATTGCTTTAGTTCAGTTTATTCACTTGTAAGCCGCTCTTTTCCTCTTTATTATTCACAGAAGAAGACTTCTAAGGTTTCTTGAGCTGATGAATCTATATGCTCAAGTTAGTGGTGGCGTTTTCATTGATTGCTCGTTGAGAATACACTTTAACACTAAAAATAAGATACATGCATTTATTTGGATCTGTTCCTTACATTAGGTTGCCTCTAAAATCTGTACTTATGGGCCTCTGTATTGGTTAATTTCCACAGCGATAGTATCATGGGAGGTGCGGGTTTTCAACCTAAAGTTGGAATTCACCAAGAACCACTTATTCAAGTTATGTCCAGTATGGCCTCCCACAGTCTCTTCGAAGCAGAAGGCTCCAATGCCAGTCCCTCTCTCATTCAGACGCCAAAAATGGTTCAGGTTTCTGGGTATCCACTACCTCAGACATTGGATGGGAAGCAGCCCCAACCTGGAATTCAGTATGTTCATGGCGGTGCCTGTTATGTACCTCATTATCCTAGCGGTCCTCTGCCAGTATCATCCTGTTATCCATTTTATCAGGTTCCCATGCAGCAGCCACAACAAACTCCTTATCCTCTGAATCAACAATACCCAATATACTTGGTTCCTGTGCAGCAAATGCAATCTCACAGTATGTCAGTACTGCCCAACATTAATCATGCAGCAGTGATGGCGTCCAATCGGCCACCCTTGCATTCACAAAGTGTCATAAACCCTCCATCAGTAGCTTATAAGGAGGTCATGGCGGCTCAATCAGTGCCTGAGTCAGGTCCAAAAGTGTACACGACTGTCCCAACAGCATCACTACCCATTAGTGCGCCTTCTCAGACTCAGCAACAATATACTGTCCTTCCTGAACCACAGCTTACTTCCCAACCTGTCTCAACTGCATCAGTTCCTGCTGCAAATGATGCAAATGAGTTTGACGATGATCTTGCATACAATCAGATATATAAATCTCAGC</genome_strand>
        <mrna_strand>CTCATCATCAGCTTCAATAGAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATAGTATCGTTGGAAGTACGGGTTTTCAACCTAAAGTTGGAATTCACCAAGAGCCACTTATTCAAGTTATGTCCAGTATGGCTTCCCACAGTCTCTTCGAAGCAGAAGGCTCCAATGCCAATCCCTCTCTCATTCAGACGCCAAAAATGGTTCAGGTTTCTGGGTATCCACTACCTCAAACATTGGATGGGAAGCACCCCCAACCTGGAATGCAGTATGTTCATGGTGGTGCCTGTTATGTACCTCATTATCCTAGCGGTCCTTTGCCAGTATCATCCTGTTATCCATTTTATCAGGTTCCCATGCAGCAGCCACAACAAACTCCTTATCCTCTGAATCAACAATACCCAATATACTTGGTTCCTATGCAGCAAATGCAATCTCACAGTATGTCAGTGTTGCCCAACATTAATCATGCAGCAGTAATGGCGTCCAATCGGCCACCCTTGCATCCACAAAGTGTCATAAACCCTCCATCAGTAGCTTATAAGGAGGTCATGGCGGCTCAATCAGTGCCTGAGTCGGGTTCAAAAGTGTACACGACTGTCCCAACAGCATCACTACCCATTAGTGCGCCTTCTCAGACTCAGCAACAATATACTGTCCTTCCTGAACCACAGCTTATTTCCCAACCTGTCTCAACTGCATCAGTTCCTGCTGCAAATGATGCAAATGAGTTTGACGATGATCTTGCATACNATCAGATATATAAATCTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E478195" ref_strand="+" ref_description="SGN-E478195 [cSTD-3-H9]">
      <seq>ctcatcatcagcttcaatagagagcgatagtatcgttggaagtacgggttttcaacctaaagttggaattcaccaagagccacttattcaagttatgtccagtatggcttcccacagtctcttcgaagcagaaggctccaatgccaatccctctctcattcagacgccaaaaatggttcaggtttctgggtatccactacctcaaacatnntggatgggaagcacccccaacctggaatgcagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="82461" stop="84205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82761" g_stop="82784" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82785" i_stop="83720" i_length="936">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83721" g_stop="83939" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="245" r_length="221" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E478195" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>243</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82761" e_stop="82784"/>
          <exon e_start="83721" e_stop="83939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATCATCAGCTTCAATAGAGAGGTACTATTTTCTTTTTTTCTATTTGATGTTACTGTTTGTTTTCTAGTTATGCTATTGGAGTCATTGATGCTATGTAGGTTAACAAAAGTTTAGATTTTTGGTTGACCTACTGGTTTTATGGGTTGAGTTCTGCACCAATACCTGTGCTATGTAAGTAAGTACTTTTTCTTTTTTATGACAACGGAAATCCGCAGCCGCTAACTTTTGGGTGCGTACAGGGTAAACCTCGTTTCTATGTCATAGCTCGCAAACCACATAGGAGAGCTAATCCGCACTAGGCAAGCCTTGTGCGATGAGCTCGACCCAGAAGGCAAACCCCTTGTTTTCGCTGGCAAGGGGTTTCAAACTTGAGACCTCCAACATGGAAGTCCCAAGATCAAGTATTTTTGTTTCAATTGGATTCTACTTCCCTGTGACAATAGAAGAGAAAGGTAGTAAGGTGACGAGGAACATATTGATTTATATTTTTGACTTACAGGGTCTTTTTTTTTCACTTTGTTAAGAGTTACAAATTAGTGTAATGAATCCACAGTAGAATTTCATTGGGGATTAACTGACAGCCCTCCCCAAAAGGAAGAGAAATCATTAGTTTCTACAGTGTAGTATGCTTTGGCCTGTATTCTAGCTTGTTATGCTATTTGTATGGTTACTGTAGTGTTATGAACTGACAGTCTGTTTTCTGGATTGCTTTAGTTCAGTTTATTCACTTGTAAGCCGCTCTTTTCCTCTTTATTATTCACAGAAGAAGACTTCTAAGGTTTCTTGAGCTGATGAATCTATATGCTCAAGTTAGTGGTGGCGTTTTCATTGATTGCTCGTTGAGAATACACTTTAACACTAAAAATAAGATACATGCATTTATTTGGATCTGTTCCTTACATTAGGTTGCCTCTAAAATCTGTACTTATGGGCCTCTGTATTGGTTAATTTCCACAGCGATAGTATCATGGGAGGTGCGGGTTTTCAACCTAAAGTTGGAATTCACCAAGAACCACTTATTCAAGTTATGTCCAGTATGGCCTCCCACAGTCTCTTCGAAGCAGAAGGCTCCAATGCCAGTCCCTCTCTCATTCAGACGCCAAAAATGGTTCAGGTTTCTGGGTATCCACTACCTCAGACAT--TGGATGGGAAGCAGCCCCAACCTGGAATTCAGTA</genome_strand>
        <mrna_strand>CTCATCATCAGCTTCAATAGAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATAGTATCGTTGGAAGTACGGGTTTTCAACCTAAAGTTGGAATTCACCAAGAGCCACTTATTCAAGTTATGTCCAGTATGGCTTCCCACAGTCTCTTCGAAGCAGAAGGCTCCAATGCCAATCCCTCTCTCATTCAGACGCCAAAAATGGTTCAGGTTTCTGGGTATCCACTACCTCAAACATNNTGGATGGGAAGCACCCCCAACCTGGAATGCAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319310" ref_strand="+" ref_description="SGN-E319310 [cTOB-16-H18]">
      <seq>tgttatccattttatcaggttcccatgcagcagccacaacaaactccttatcctctgaatcaacaatacccaatatacttggttcctgtgcagcaaatgcaatctcacagtatgtcagtactgcccaacattaatcatgcagcagtgatggcgtccaatcggccacccttgcattcacaaagtgtcataaaccctccatcagtagcttataaggaggtcatggcggctcaatcagtgcctgagtcaggtccaaaagtgtacacgactgtcccaacagcatcactacccattagtgcgccttctcagactcagcaacaatatactgtccttcctgaaccacagcttacttcccaacctgtctcaactgcatcagttcctgctgcaaatgatgcaaatgagtttgacgatgatcttgcatacaatcagatatataaatctcagcctcctccaccttctttcatttcccagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="83701" stop="84769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84001" g_stop="84469" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E319310" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84001" e_stop="84469"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTATCCATTTTATCAGGTTCCCATGCAGCAGCCACAACAAACTCCTTATCCTCTGAATCAACAATACCCAATATACTTGGTTCCTGTGCAGCAAATGCAATCTCACAGTATGTCAGTACTGCCCAACATTAATCATGCAGCAGTGATGGCGTCCAATCGGCCACCCTTGCATTCACAAAGTGTCATAAACCCTCCATCAGTAGCTTATAAGGAGGTCATGGCGGCTCAATCAGTGCCTGAGTCAGGTCCAAAAGTGTACACGACTGTCCCAACAGCATCACTACCCATTAGTGCGCCTTCTCAGACTCAGCAACAATATACTGTCCTTCCTGAACCACAGCTTACTTCCCAACCTGTCTCAACTGCATCAGTTCCTGCTGCAAATGATGCAAATGAGTTTGACGATGATCTTGCATACAATCAGATATATAAATCTCAGCCTCCTCCACCTTCTTTCATTTCCCAGT</genome_strand>
        <mrna_strand>TGTTATCCATTTTATCAGGTTCCCATGCAGCAGCCACAACAAACTCCTTATCCTCTGAATCAACAATACCCAATATACTTGGTTCCTGTGCAGCAAATGCAATCTCACAGTATGTCAGTACTGCCCAACATTAATCATGCAGCAGTGATGGCGTCCAATCGGCCACCCTTGCATTCACAAAGTGTCATAAACCCTCCATCAGTAGCTTATAAGGAGGTCATGGCGGCTCAATCAGTGCCTGAGTCAGGTCCAAAAGTGTACACGACTGTCCCAACAGCATCACTACCCATTAGTGCGCCTTCTCAGACTCAGCAACAATATACTGTCCTTCCTGAACCACAGCTTACTTCCCAACCTGTCTCAACTGCATCAGTTCCTGCTGCAAATGATGCAAATGAGTTTGACGATGATCTTGCATACAATCAGATATATAAATCTCAGCCTCCTCCACCTTCTTTCATTTCCCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427945" ref_strand="+" ref_description="SGN-E427945 [STM-49-I24]">
      <seq>tttttattgtcctaactcaacccaaataaagagacaaacaaactacacaagaaaaacttatggtttatgtgcctcaaacaacatgaaagaataaatcttaaaatttgtgaactataacaaaagatgatcccactatcaaaacttttgatcttcttttcacagcctcactgaggatgtgatggtgcctggttcattacattgttactgtgcatctgcatggaagactctgacagtaatactgctgccccctttgtaatgttttggcactgggaaatgaaagaaggtggaggaggctgagatttatatatctgattgtatgcaagatcatcgtcaaactcatttgcatcatttgcagcaggaactgatgcagttgagacaggttgggaaataagctgtggttcaggaaggacagtatattgttgctgagtctgagaaggcgcactaatgggtagtgatgctgttgggacagtcgtgtacacttttgaacccgactcaggcactgattgagccgccatgacctccttataagctactgatggagggtttatgacactttgtggatgcaagggtggccgattggacgccattactgctgcatgattaatgttgggcaacactgacatactgtgagattgcatttgctgcataggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="85011" stop="83782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84734" g_stop="84082" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E427945" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84734" e_stop="84082"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGATTGTCCTAACAAATATTAAATAAAGAGACAAACAAACTACACAAGAAAATCTTATGGTTTATGTGCCTCAAACGACATGAAAGAATAAATCTTAAAATTTGTGAACTATAACAAAAGATGATCCCACTATCAAAACTTTTGATCTTATTGTCGTAGCCTCACTGAGGATGTGATGGTGCCTGGTTCATGACATTGTTACTGTGCATCTGCATGGAAGACTCTGACAGTAATACTGCCGCCCCCTTTGTAATGGTTTGGCACTGGGAAATGAAAGAAGGTGGAGGAGGCTGAGATTTATATATCTGATTGTATGCAAGATCATCGTCAAACTCATTTGCATCATTTGCAGCAGGAACTGATGCAGTTGAGACAGGTTGGGAAGTAAGCTGTGGTTCAGGAAGGACAGTATATTGTTGCTGAGTCTGAGAAGGCGCACTAATGGGTAGTGATGCTGTTGGGACAGTCGTGTACACTTTTGGACCTGACTCAGGCACTGATTGAGCCGCCATGACCTCCTTATAAGCTACTGATGGAGGGTTTATGACACTTTGTGAATGCAAGGGTGGCCGATTGGACGCCATCACTGCTGCATGATTAATGTTGGGCAGTACTGACATACTGTGAGATTGCATTTGCTGCACAGGAAC</genome_strand>
        <mrna_strand>TTTTTATTGTCCTAACTCAACCCAAATAAAGAGACAAACAAACTACACAAGAAAAACTTATGGTTTATGTGCCTCAAACAACATGAAAGAATAAATCTTAAAATTTGTGAACTATAACAAAAGATGATCCCACTATCAAAACTTTTGATCTTCTTTTCACAGCCTCACTGAGGATGTGATGGTGCCTGGTTCATTACATTGTTACTGTGCATCTGCATGGAAGACTCTGACAGTAATACTGCTGCCCCCTTTGTAATGTTTTGGCACTGGGAAATGAAAGAAGGTGGAGGAGGCTGAGATTTATATATCTGATTGTATGCAAGATCATCGTCAAACTCATTTGCATCATTTGCAGCAGGAACTGATGCAGTTGAGACAGGTTGGGAAATAAGCTGTGGTTCAGGAAGGACAGTATATTGTTGCTGAGTCTGAGAAGGCGCACTAATGGGTAGTGATGCTGTTGGGACAGTCGTGTACACTTTTGAACCCGACTCAGGCACTGATTGAGCCGCCATGACCTCCTTATAAGCTACTGATGGAGGGTTTATGACACTTTGTGGATGCAAGGGTGGCCGATTGGACGCCATTACTGCTGCATGATTAATGTTGGGCAACACTGACATACTGTGAGATTGCATTTGCTGCATAGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E421042" ref_strand="+" ref_description="SGN-E421042 [STM-32-M11]">
      <seq>tttttttttttttatggtaaaacaacacactgttattcatcacatatattctgatgcacacaaacaaaaacagctactttcagtcttcaccattgtttaactttcttcaatattttctctttttgggtgttgatgtattcagagtatgggtattgtcctaacaaatattaaataaagagacaaacaaactacacaagaaaaacttatggtttatgtgcctcaaacaacatgaaagaataaatcttaaaatttgtgaactataacaaaagatgatcccactatcaaaacttttgatcttcttttcacagcctcactgaggatgtgatggtgcctggttcattacattgttactgtgcatctgcatggaagactctgacagtaatactgctgccccctttgtaatgttttggcactgggaaatgaaagaaggtggaggaggctgagatttatatatctgattgtatgcaagatcatcgtcaaactcatttgcatcatttgcagcaggaactgatgcagttgagacagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="85154" stop="84055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84878" g_stop="84355" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E421042" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E421042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84878" e_stop="84355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGACAGATATTTATGGTAAAAC-TCACACTGTTATTCATCACATGTATTCTGA-GCAAACAAACAAAAACAACTACTTTCAGTCTTCACCACTGTTTAACTTTCTTCAAT-TTTTCTATTTTTTGGGTGTCGATGTATTCAGAGTATGGGGATTGTCCTAACAAATATTAAATAAAGAGACAAACAAACTACACAAGAAAATCTTATGGTTTATGTGCCTCAAACGACATGAAAGAATAAATCTTAAAATTTGTGAACTATAACAAAAGATGATCCCACTATCAAAACTTTTGATCTTATTGTCGTAGCCTCACTGAGGATGTGATGGTGCCTGGTTCATGACATTGTTACTGTGCATCTGCATGGAAGACTCTGACAGTAATACTGCCGCCCCCTTTGTAATGGTTTGGCACTGGGAAATGAAAGAAGGTGGAGGAGGCTGAGATTTATATATCTGATTGTATGCAAGATCATCGTCAAACTCATTTGCATCATTTGCAGCAGGAACTGATGCAGTTGAGACAGG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTATGGTAAAACAACACACTGTTATTCATCACATATATTCTGATGCACACAAACAAAAACAGCTACTTTCAGTCTTCACCATTGTTTAACTTTCTTCAATATTTTCT-CTTTTTGGGTGTTGATGTATTCAGAGTATGGGTATTGTCCTAACAAATATTAAATAAAGAGACAAACAAACTACACAAGAAAAACTTATGGTTTATGTGCCTCAAACAACATGAAAGAATAAATCTTAAAATTTGTGAACTATAACAAAAGATGATCCCACTATCAAAACTTTTGATCTTCTTTTCACAGCCTCACTGAGGATGTGATGGTGCCTGGTTCATTACATTGTTACTGTGCATCTGCATGGAAGACTCTGACAGTAATACTGCTGCCCCCTTTGTAATGTTTTGGCACTGGGAAATGAAAGAAGGTGGAGGAGGCTGAGATTTATATATCTGATTGTATGCAAGATCATCGTCAAACTCATTTGCATCATTTGCAGCAGGAACTGATGCAGTTGAGACAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E407172" ref_strand="+" ref_description="SGN-E407172 [PPI-6-C4]">
      <seq>cctgtctcaactgcatcagttcctgctgcaaatgatgcaaatgagtttgacgatgatcttgcatacaatcagatatataaatctcagcctcctccaccttctttcatttcccagtgccaaaacattacaaagggggcagcagtattactgtcagagtcttccatgcagatgcacagtaacaatgtaatgaaccaggcaccatcacatcctcagtgaggctgtgaaaagaagatcaaaagttttgatagtgggatcatcttttgttatagttcacaaattttaagatttattctttcatgttgtttgaggcacataaaccataagtttttcttgtgtagtttgtttgtctctttatttaatatttgttaggacaatacccatactctgaatacatcaacacccaaaaagagaaaatattgaagaaagttaaacaatggtgaagactgaaagtagctgtttttgtttgtgtgcatcagaatatatgtgatgaataacagtgtgttttgttttaccataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="84055" stop="85160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84355" g_stop="84855" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="514" polyA_stop="528"/>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E407172" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E407172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84355" e_stop="84855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGTCTCAACTGCATCAGTTCCTGCTGCAAATGATGCAAATGAGTTTGACGATGATCTTGCATACAATCAGATATATAAATCTCAGCCTCCTCCACCTTCTTTCATTTCCCAGTGCCAAACCATTACAAAGGGGGCGGCAGTATTACTGTCAGAGTCTTCCATGCAGATGCACAGTAACAATGTCATGAACCAGGCACCATCACATCCTCAGTGAGGCTACGACAATAAGATCAAAAGTTTTGATAGTGGGATCATCTTTTGTTATAGTTCACAAATTTTAAGATTTATTCTTTCATGTCGTTTGAGGCACATAAACCATAAGATTTTCTTGTGTAGTTTGTTTGTCTCTTTATTTAATATTTGTTAGGACAATCCCCATACTCTGAATACATCGACACCCAAAAAATAGAAAA-ATTGAAGAAAGTTAAACAGTGGTGAAGACTGAAAGTAGTTGTTTTTGTTTGTTTGC-TCAGAATACATGTGATGAATAACAGTGTGA</genome_strand>
        <mrna_strand>CCTGTCTCAACTGCATCAGTTCCTGCTGCAAATGATGCAAATGAGTTTGACGATGATCTTGCATACAATCAGATATATAAATCTCAGCCTCCTCCACCTTCTTTCATTTCCCAGTGCCAAAACATTACAAAGGGGGCAGCAGTATTACTGTCAGAGTCTTCCATGCAGATGCACAGTAACAATGTAATGAACCAGGCACCATCACATCCTCAGTGAGGCTGTGAAAAGAAGATCAAAAGTTTTGATAGTGGGATCATCTTTTGTTATAGTTCACAAATTTTAAGATTTATTCTTTCATGTTGTTTGAGGCACATAAACCATAAGTTTTTCTTGTGTAGTTTGTTTGTCTCTTTATTTAATATTTGTTAGGACAATACCCATACTCTGAATACATCAACACCC-AAAAAGAGAAAATATTGAAGAAAGTTAAACAATGGTGAAGACTGAAAGTAGCTGTTTTTGTTTGTGTGCATCAGAATATATGTGATGAATAACAGTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E421041" ref_strand="+" ref_description="SGN-E421041 [STM-32-M11]">
      <seq>cctgtctcaactgcatcagttcctgctgcaaatgatgcaaatgagtttgacgatgatcttgcatacaatcagatatataaatctcagcctcctccaccttctttcatttcccagtgccaaaacattacaaagggggcagcagtattactgtcagagtcttccatgcagatgcacagtaacaatgtaatgaaccaggcaccatcacatcctcagtgaggctgtgaaaagaagatcaaaagttttgatagtgggatcatcttttgttatagttcacaaattttaagatttattctttcatgttgtttgaggcacataaaccataagtttttcttgtgtagtttgtttgtctctttatttaatatttgttaggacaatacccatactctgaatacatcaacacccaaaaagagaaaatattgaagaaagttaaacaatggtgaagactgaaagtagctgtttttgtttgtgtgcatcagaatatatgtgatgaataacagtgtgtttgttttaccataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="84055" stop="85170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84355" g_stop="84855" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="513" polyA_stop="527"/>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E421041" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E421041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84355" e_stop="84855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGTCTCAACTGCATCAGTTCCTGCTGCAAATGATGCAAATGAGTTTGACGATGATCTTGCATACAATCAGATATATAAATCTCAGCCTCCTCCACCTTCTTTCATTTCCCAGTGCCAAACCATTACAAAGGGGGCGGCAGTATTACTGTCAGAGTCTTCCATGCAGATGCACAGTAACAATGTCATGAACCAGGCACCATCACATCCTCAGTGAGGCTACGACAATAAGATCAAAAGTTTTGATAGTGGGATCATCTTTTGTTATAGTTCACAAATTTTAAGATTTATTCTTTCATGTCGTTTGAGGCACATAAACCATAAGATTTTCTTGTGTAGTTTGTTTGTCTCTTTATTTAATATTTGTTAGGACAATCCCCATACTCTGAATACATCGACACCCAAAAAATAGAAAA-ATTGAAGAAAGTTAAACAGTGGTGAAGACTGAAAGTAGTTGTTTTTGTTTGTTTGC-TCAGAATACATGTGATGAATAACAGTGTGA</genome_strand>
        <mrna_strand>CCTGTCTCAACTGCATCAGTTCCTGCTGCAAATGATGCAAATGAGTTTGACGATGATCTTGCATACAATCAGATATATAAATCTCAGCCTCCTCCACCTTCTTTCATTTCCCAGTGCCAAAACATTACAAAGGGGGCAGCAGTATTACTGTCAGAGTCTTCCATGCAGATGCACAGTAACAATGTAATGAACCAGGCACCATCACATCCTCAGTGAGGCTGTGAAAAGAAGATCAAAAGTTTTGATAGTGGGATCATCTTTTGTTATAGTTCACAAATTTTAAGATTTATTCTTTCATGTTGTTTGAGGCACATAAACCATAAGTTTTTCTTGTGTAGTTTGTTTGTCTCTTTATTTAATATTTGTTAGGACAATACCCATACTCTGAATACATCAACACCC-AAAAAGAGAAAATATTGAAGAAAGTTAAACAATGGTGAAGACTGAAAGTAGCTGTTTTTGTTTGTGTGCATCAGAATATATGTGATGAATAACAGTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E732861" ref_strand="+" ref_description="SGN-E732861 [LB03BD05]">
      <seq>attgcttcaagtttattactcagtcttgaacaattgacaaatgaagctgaagaatctgagaaagaaagagacaatgccattgaggaagctgcaaaagtcgaagaagaaatacagaaaacacaatctgaaacagtgttggccgaggaaagatgggaagctgcaatacaagagcttgaaacaatcaaatcatcagaagctactgtcctaagaaacctaaaaagacttactgatgtaactatgaaaagtagagcatccgcttccacctccacaataactatttccagatttgagtatgagtacttaaaaggacgtgcaggacaggcagttgaaattgctgataagaaagttgaagcagctgaggcttgggtaaaagctttgcaagcaagtgaaaaggagatctcaatgaagacagaggtcatcagaaaggaaatccaagagcttaagatggaagaagagcaaaaaggcctgaaaatggagcattcaccttccgtaagaatgttggtcgatatgcagttgcagaaatgggaggagatacatggaaaagacctggagcaatctccgaacagttcacgtacaaaatccaactcaataagtggaaaaatgacaccagctagacgagctaagttcagaaagtcagcatctcctgcacctcgaacacctagagcttcttccttcgcggttaggagaagaagaaaggtaataccaaacatagctaagttatttattagcaagagcaatgatgaaaacctgtaagctatattattgcagctgcaaatacttgccaaagttttctgatgtaaaagatatgatcccactanaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="86546" stop="85128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86246" g_stop="85421" g_length="826"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="826" r_length="826" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E732861" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86246" e_stop="85421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCTTCAAGTTTATTACTCAGTCTTGAACAATTGACAAATGAAGCTGAAGAATCTGAGAAAGAAAGAGACAATGCCATTGAGGAAGCTGCAAAAGTCGAAGAAGAAATACAGAAAACACAATCTGAAACAGTGTTGGCCGAGGAAAGATGGGAAGCTGCAATACAAGAGCTTGAAACAATCAAATCATCAGAAGCTACTGTCCTAAGAAACCTAAAAAGACTTACTGATGTAACTATGAAAAGTAGAGCATCCGCTTCCACCTCCACAATAACTATTTCCAGATTTGAGTATGAGTACTTAAAAGGACGTGCAGGACAGGCAGTTGAAATTGCTGATAAGAAAGTTGAAGCAGCTGAGGCTTGGGTAAAAGCTTTGCAAGCAAGTGAAAAGGAGATCTCAATGAAGACAGAGGTCATCAGAAAGGAAATCCAAGAGCTTAAGATGGAAGAAGAGCAAAAAGGCCTGAAAATGGAGCATTCACCTTCCGTAAGAATGTTGGTCGATATGCAGTTGCAGAAATGGGAGGAGATACATGGAAAAGACCTGGAGCAATCTCCGAACAGTTCACGTACAAAATCCAACTCAATAAGTGGAAAAATGACACCAGCTAGACGAGCTAAGTTCAGAAAGTCAGCATCTCCTGCACCTCGAACACCTAGAGCTTCTTCCTTCGCGGTTAGGAGAAGAAGAAAGGTAATACCAAACATAGCTAAGTTATTTATTAGCAAGAGCAATGATGAAAACCTGTAAGCTATATTATTGCAGCTGCAAATACTTGCCAAAGTTTTCTGATGTAAAAGATATGATCCCACTAAATCCTAGT</genome_strand>
        <mrna_strand>ATTGCTTCAAGTTTATTACTCAGTCTTGAACAATTGACAAATGAAGCTGAAGAATCTGAGAAAGAAAGAGACAATGCCATTGAGGAAGCTGCAAAAGTCGAAGAAGAAATACAGAAAACACAATCTGAAACAGTGTTGGCCGAGGAAAGATGGGAAGCTGCAATACAAGAGCTTGAAACAATCAAATCATCAGAAGCTACTGTCCTAAGAAACCTAAAAAGACTTACTGATGTAACTATGAAAAGTAGAGCATCCGCTTCCACCTCCACAATAACTATTTCCAGATTTGAGTATGAGTACTTAAAAGGACGTGCAGGACAGGCAGTTGAAATTGCTGATAAGAAAGTTGAAGCAGCTGAGGCTTGGGTAAAAGCTTTGCAAGCAAGTGAAAAGGAGATCTCAATGAAGACAGAGGTCATCAGAAAGGAAATCCAAGAGCTTAAGATGGAAGAAGAGCAAAAAGGCCTGAAAATGGAGCATTCACCTTCCGTAAGAATGTTGGTCGATATGCAGTTGCAGAAATGGGAGGAGATACATGGAAAAGACCTGGAGCAATCTCCGAACAGTTCACGTACAAAATCCAACTCAATAAGTGGAAAAATGACACCAGCTAGACGAGCTAAGTTCAGAAAGTCAGCATCTCCTGCACCTCGAACACCTAGAGCTTCTTCCTTCGCGGTTAGGAGAAGAAGAAAGGTAATACCAAACATAGCTAAGTTATTTATTAGCAAGAGCAATGATGAAAACCTGTAAGCTATATTATTGCAGCTGCAAATACTTGCCAAAGTTTTCTGATGTAAAAGATATGATCCCACTANAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E545769" ref_strand="+" ref_description="SGN-E545769 [TUS-68-M16](-)">
      <seq>aaagaaagagtgaatgccattgaggaagctgcaaaagtcgagaaagaaattcagaaaacacaatctgaaacagtattggccgaggaaagatgggaagctgcaatacaagagcttgaaacaatcaaatcatcagaagctactgccctaagcaacctaaaaagacttactgatgtaactatgaaaagtagagcatccgcttccacctccacaataactatttccagatttgagtatgagtacttaaaaggacgtgcaggacaggcagttgaaattgctgataagaaagttgaagcagctgaggcttgggtaaaagctttgcaagcaagtgaaaaggagatctcaatgaagacagaggtcatcagaaaggaaatccaagagcttaagatggaagaagagcaaaaaggcctgaaaatggagcattcaccttctgtaagaatgttggtcgatatgcagttgcagaaatgggaggagatacatggaaaagacctggagcaatctcagaacagttcacgtacaaaatccaactcaataagtggaaaaatgacaccagcaagacgagctaagttcagaaagtcagcatctcctgcacctcgaacacctagagcttcttccttcgcggttaggagaagaagaaagttaataccaaacatagctaagttatttattagcaagagcaatgatgagaacctgtaagctatattattgcagctgcaaatacttgccaaagttttctgatgtaaaagatataatcccactaaaaacaaaaaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="86486" stop="85123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86186" g_stop="85429" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="758" r_length="758" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="759" polyA_stop="769"/>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E545769" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86186" e_stop="85429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAAGAGACAATGCCATTGAGGAAGCTGCAAAAGTCGAAGAAGAAATACAGAAAACACAATCTGAAACAGTGTTGGCCGAGGAAAGATGGGAAGCTGCAATACAAGAGCTTGAAACAATCAAATCATCAGAAGCTACTGTCCTAAGAAACCTAAAAAGACTTACTGATGTAACTATGAAAAGTAGAGCATCCGCTTCCACCTCCACAATAACTATTTCCAGATTTGAGTATGAGTACTTAAAAGGACGTGCAGGACAGGCAGTTGAAATTGCTGATAAGAAAGTTGAAGCAGCTGAGGCTTGGGTAAAAGCTTTGCAAGCAAGTGAAAAGGAGATCTCAATGAAGACAGAGGTCATCAGAAAGGAAATCCAAGAGCTTAAGATGGAAGAAGAGCAAAAAGGCCTGAAAATGGAGCATTCACCTTCCGTAAGAATGTTGGTCGATATGCAGTTGCAGAAATGGGAGGAGATACATGGAAAAGACCTGGAGCAATCTCCGAACAGTTCACGTACAAAATCCAACTCAATAAGTGGAAAAATGACACCAGCTAGACGAGCTAAGTTCAGAAAGTCAGCATCTCCTGCACCTCGAACACCTAGAGCTTCTTCCTTCGCGGTTAGGAGAAGAAGAAAGGTAATACCAAACATAGCTAAGTTATTTATTAGCAAGAGCAATGATGAAAACCTGTAAGCTATATTATTGCAGCTGCAAATACTTGCCAAAGTTTTCTGATGTAAAAGATATGATCCCACTAA</genome_strand>
        <mrna_strand>AAAGAAAGAGTGAATGCCATTGAGGAAGCTGCAAAAGTCGAGAAAGAAATTCAGAAAACACAATCTGAAACAGTATTGGCCGAGGAAAGATGGGAAGCTGCAATACAAGAGCTTGAAACAATCAAATCATCAGAAGCTACTGCCCTAAGCAACCTAAAAAGACTTACTGATGTAACTATGAAAAGTAGAGCATCCGCTTCCACCTCCACAATAACTATTTCCAGATTTGAGTATGAGTACTTAAAAGGACGTGCAGGACAGGCAGTTGAAATTGCTGATAAGAAAGTTGAAGCAGCTGAGGCTTGGGTAAAAGCTTTGCAAGCAAGTGAAAAGGAGATCTCAATGAAGACAGAGGTCATCAGAAAGGAAATCCAAGAGCTTAAGATGGAAGAAGAGCAAAAAGGCCTGAAAATGGAGCATTCACCTTCTGTAAGAATGTTGGTCGATATGCAGTTGCAGAAATGGGAGGAGATACATGGAAAAGACCTGGAGCAATCTCAGAACAGTTCACGTACAAAATCCAACTCAATAAGTGGAAAAATGACACCAGCAAGACGAGCTAAGTTCAGAAAGTCAGCATCTCCTGCACCTCGAACACCTAGAGCTTCTTCCTTCGCGGTTAGGAGAAGAAGAAAGTTAATACCAAACATAGCTAAGTTATTTATTAGCAAGAGCAATGATGAGAACCTGTAAGCTATATTATTGCAGCTGCAAATACTTGCCAAAGTTTTCTGATGTAAAAGATATAATCCCACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740433" ref_strand="+" ref_description="SGN-E740433 [LC21BF10]">
      <seq>cgaagctttcagttcatgggttcaatggacgttgtgaggaatgagctcaaatgcatctcagaggaatcagctcgattaaagaaaaagggtaacaaggcagactcgacaattcagaacctcaacacgaagcttctgagggcaaaagccaaactggaagctgcatcccacaatgaaggaaaagcaacctctattgcttcaagtttattactcagtcttgaacaattgacaaatgaagctgaagaatctgagaaagaaagagacaatgccattgaggaagctgcaaaagtcgaagaagaaatacagaaaacacaatctgaaacagtgttggccgaggaaagatgggaagctgcaatacaagagcttgaaacaatcaaatcatcagaagctactgtcctaagaaacctaaaaagacttactgatgtaactatgaaaagtagagcatccgcttccacctccacaataactatttccagatttgagtatgagtacttaaaaggacgtgcaggacaggcagttgaaattgctgataagaaagttgaagcagctgaggcttgggtaaaagctttgcaagcaagtgaaaaggagatctcaatgaagacagaggtcatcagaaaggaaatccaagagcttaagatggaagaagagcaaaaaggcctgaaaatggagcattcaccttccgtaagaatgttggtcgatatgcagttgcagaaatgggaggagatacatggaaaagacctggagcaatctccgaacagttcacgtacaaaatccaaactcataagtggaaaaatgacaccagctagacgagctaagttcagaaagtcagcatctcctgcacctcgaacacctagagcttcttccttcgcggttagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="86735" stop="85263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86436" g_stop="85563" g_length="874"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="873" r_length="873" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E740433" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86436" e_stop="85563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACAGCTTTCAGTTCATGGGTTCAATGGACGTTGTGAGGAATGAGCTCAAATGCATCTCAGAGGAATCAGCTCGATTAAAGAAAAAGGGTAACAAGGCAGACTCGACAATTCAGAACCTCAACACGAAGCTTCTGAGGGCAAAAGCCAAACTGGAAGCTGCATCCCACAATGAAGGAAAAGCAACCTCTATTGCTTCAAGTTTATTACTCAGTCTTGAACAATTGACAAATGAAGCTGAAGAATCTGAGAAAGAAAGAGACAATGCCATTGAGGAAGCTGCAAAAGTCGAAGAAGAAATACAGAAAACACAATCTGAAACAGTGTTGGCCGAGGAAAGATGGGAAGCTGCAATACAAGAGCTTGAAACAATCAAATCATCAGAAGCTACTGTCCTAAGAAACCTAAAAAGACTTACTGATGTAACTATGAAAAGTAGAGCATCCGCTTCCACCTCCACAATAACTATTTCCAGATTTGAGTATGAGTACTTAAAAGGACGTGCAGGACAGGCAGTTGAAATTGCTGATAAGAAAGTTGAAGCAGCTGAGGCTTGGGTAAAAGCTTTGCAAGCAAGTGAAAAGGAGATCTCAATGAAGACAGAGGTCATCAGAAAGGAAATCCAAGAGCTTAAGATGGAAGAAGAGCAAAAAGGCCTGAAAATGGAGCATTCACCTTCCGTAAGAATGTTGGTCGATATGCAGTTGCAGAAATGGGAGGAGATACATGGAAAAGACCTGGAGCAATCTCCGAACAGTTCACGTACAAAATCC-AACTCAATAAGTGGAAAAATGACACCAGCTAGACGAGCTAAGTTCAGAAAGTCAGCATCTCCTGCACCTCGAACACCTAGAGCTTCTTCCTTCGCGGTTAGG</genome_strand>
        <mrna_strand>CGA-AGCTTTCAGTTCATGGGTTCAATGGACGTTGTGAGGAATGAGCTCAAATGCATCTCAGAGGAATCAGCTCGATTAAAGAAAAAGGGTAACAAGGCAGACTCGACAATTCAGAACCTCAACACGAAGCTTCTGAGGGCAAAAGCCAAACTGGAAGCTGCATCCCACAATGAAGGAAAAGCAACCTCTATTGCTTCAAGTTTATTACTCAGTCTTGAACAATTGACAAATGAAGCTGAAGAATCTGAGAAAGAAAGAGACAATGCCATTGAGGAAGCTGCAAAAGTCGAAGAAGAAATACAGAAAACACAATCTGAAACAGTGTTGGCCGAGGAAAGATGGGAAGCTGCAATACAAGAGCTTGAAACAATCAAATCATCAGAAGCTACTGTCCTAAGAAACCTAAAAAGACTTACTGATGTAACTATGAAAAGTAGAGCATCCGCTTCCACCTCCACAATAACTATTTCCAGATTTGAGTATGAGTACTTAAAAGGACGTGCAGGACAGGCAGTTGAAATTGCTGATAAGAAAGTTGAAGCAGCTGAGGCTTGGGTAAAAGCTTTGCAAGCAAGTGAAAAGGAGATCTCAATGAAGACAGAGGTCATCAGAAAGGAAATCCAAGAGCTTAAGATGGAAGAAGAGCAAAAAGGCCTGAAAATGGAGCATTCACCTTCCGTAAGAATGTTGGTCGATATGCAGTTGCAGAAATGGGAGGAGATACATGGAAAAGACCTGGAGCAATCTCCGAACAGTTCACGTACAAAATCCAAACTC-ATAAGTGGAAAAATGACACCAGCTAGACGAGCTAAGTTCAGAAAGTCAGCATCTCCTGCACCTCGAACACCTAGAGCTTCTTCCTTCGCGGTTAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740548" ref_strand="+" ref_description="SGN-E740548 [LC21DF10]">
      <seq>catatctttcagttcatgggttcaatggacgttgtgaggaatgagctcaaatgcatctcagaggaatcagctcgattaaagaaaaagggtaacaaggcagactcgacaattcagaacctcaacacgaagcttctgagggcaaaagccaaactggaagctgcatcccacaatgaaggaaaagcaacctctattgcttcaagtttattactcagtcttgaacaattgacaaatgaagctgaagaatctgagaaagaaagagacaatgccattgaggaagctgcaaaagtcgaagaagaaatacagaaaacacaatctgaaacagtgttggccgaggaaagatgggaagctgcaatacaagagcttgaaacaatcaaatcatcagaagctactgtcctaagaaacctaaaaagacttactgatgtaactatgaaaagtagagcatccgcttccacctccacaataactatttccagatttgagtatgagtacttaaaaggacgtgcaggacaggcagttgaaattgctgataagaaagttgaagcagctgaggcttgggtaaaagctttgcaagcaagtgaaaaggagatctcaatgaagacagaggtcatcagaaaggaaatccaagagcttaagatggaagaagagcaaaaaggcctgaaaatggagcattcaccttccgtaagaatgttggtcgatatgcaattgccgaaatgggaggagatacatggaaaagacctggagcaatctccgaacagttcacgtaacaaaatccaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="86734" stop="85362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86435" g_stop="85662" g_length="774"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="775" r_length="775" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E740548" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86435" e_stop="85662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGCTTTCAGTTCATGGGTTCAATGGACGTTGTGAGGAATGAGCTCAAATGCATCTCAGAGGAATCAGCTCGATTAAAGAAAAAGGGTAACAAGGCAGACTCGACAATTCAGAACCTCAACACGAAGCTTCTGAGGGCAAAAGCCAAACTGGAAGCTGCATCCCACAATGAAGGAAAAGCAACCTCTATTGCTTCAAGTTTATTACTCAGTCTTGAACAATTGACAAATGAAGCTGAAGAATCTGAGAAAGAAAGAGACAATGCCATTGAGGAAGCTGCAAAAGTCGAAGAAGAAATACAGAAAACACAATCTGAAACAGTGTTGGCCGAGGAAAGATGGGAAGCTGCAATACAAGAGCTTGAAACAATCAAATCATCAGAAGCTACTGTCCTAAGAAACCTAAAAAGACTTACTGATGTAACTATGAAAAGTAGAGCATCCGCTTCCACCTCCACAATAACTATTTCCAGATTTGAGTATGAGTACTTAAAAGGACGTGCAGGACAGGCAGTTGAAATTGCTGATAAGAAAGTTGAAGCAGCTGAGGCTTGGGTAAAAGCTTTGCAAGCAAGTGAAAAGGAGATCTCAATGAAGACAGAGGTCATCAGAAAGGAAATCCAAGAGCTTAAGATGGAAGAAGAGCAAAAAGGCCTGAAAATGGAGCATTCACCTTCCGTAAGAATGTTGGTCGATATGCAGTTGCAGAAATGGGAGGAGATACATGGAAAAGACCTGGAGCAATCTCCGAACAGTTCACGT-ACAAAATCCAAC</genome_strand>
        <mrna_strand>CATATCTTTCAGTTCATGGGTTCAATGGACGTTGTGAGGAATGAGCTCAAATGCATCTCAGAGGAATCAGCTCGATTAAAGAAAAAGGGTAACAAGGCAGACTCGACAATTCAGAACCTCAACACGAAGCTTCTGAGGGCAAAAGCCAAACTGGAAGCTGCATCCCACAATGAAGGAAAAGCAACCTCTATTGCTTCAAGTTTATTACTCAGTCTTGAACAATTGACAAATGAAGCTGAAGAATCTGAGAAAGAAAGAGACAATGCCATTGAGGAAGCTGCAAAAGTCGAAGAAGAAATACAGAAAACACAATCTGAAACAGTGTTGGCCGAGGAAAGATGGGAAGCTGCAATACAAGAGCTTGAAACAATCAAATCATCAGAAGCTACTGTCCTAAGAAACCTAAAAAGACTTACTGATGTAACTATGAAAAGTAGAGCATCCGCTTCCACCTCCACAATAACTATTTCCAGATTTGAGTATGAGTACTTAAAAGGACGTGCAGGACAGGCAGTTGAAATTGCTGATAAGAAAGTTGAAGCAGCTGAGGCTTGGGTAAAAGCTTTGCAAGCAAGTGAAAAGGAGATCTCAATGAAGACAGAGGTCATCAGAAAGGAAATCCAAGAGCTTAAGATGGAAGAAGAGCAAAAAGGCCTGAAAATGGAGCATTCACCTTCCGTAAGAATGTTGGTCGATATGCAATTGCCGAAATGGGAGGAGATACATGGAAAAGACCTGGAGCAATCTCCGAACAGTTCACGTAACAAAATCCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342381" ref_strand="+" ref_description="SGN-E342381 [cTOF-8-L22]">
      <seq>ctatattgtgcatatagttcttcacatatgtatatgaagttcctaagattttgccttagcagcagacacagctccatattctcttttgatgccaatttatagagcaatccagaaggaggggagagtttcatgaaagagagcttagggtcatcagttaaggcagccattgatttgtacaaaggaaattctgcaatgaaccaatcctcaattaccaagtctttagagaagccatatgcaagaaccagccaacttcacatagcaaaaagggacatgggacgactgggtgagagcagaaaagttgcagaggtagaaaaagcccaagcagaaactgagcttttggacgcgagaaagatggtgaaggagctaagttcaaggatagaagagttgaattcaagattaagtgtccagaatcaagatatggagaaactaaagacggcaaaaagagggggaaattgggggatgccacttcgcaatcatcagaataatcagcactccaaagtagtagcagagttggtatatgcaaaagaagatctgattaagcttaaacaagatatggcttctatcgtagaagaaaaaagaagggcagagcaagatatagaaacctctaatttgaaaatgcaatcttttgcangcaaagtgnaagcgttaagaaggnaagttgaggaacttaatgaagagctcgtggctagttgagctagctcgaatagaggcaatcaaagatacagagcaattgaagctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="87846" stop="86433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87546" g_stop="87321" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87320" i_stop="87249" i_length="72">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87248" g_stop="86733" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="741" r_length="516" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E342381" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87546" e_stop="87321"/>
          <exon e_start="87248" e_stop="86733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATATTGTGCATATAGTTCTTCCACATATGTATATGAAGTTCCTAAGATTTTGCCTTAGCAGCAGACACAGCTCCATATTCTCTTTTGATGCCAATTTATAGAGCAATCCAGAAGGAGGGGAGAGTTTCATGAAAGAGAGCTTAGGGTCATCAGTTAAGGCAGCCATTGATTTGTACAAAGGAAATTCTGCAATGAACCAATCCTCAATTACCAAGTCTTTAGAGGTATACTACTATATTTTCATCCAACCATATTTGAGCGTGGACTAACCTTTGTGTTGCATACTCTTTTATCAGAAGCCATATGCAAGAACCAGCCAACTTCACATAGCAAAAAGGGACATGGGACGACTGGGTGAGAGCAGAAAAGTTGCAGAGGTAGAAAAAGCCCAAGCAGAAACTGAGCTTTTGGACGCGAGAAAGATGGTGAAGGAGCTAAGTTCAAGGATAGAAGAGTTGAATTCAAGATTAAGTGTCCAGAATCAAGATATGGAGAAACTAAAGACGGCAAAAAGAGGGGGAAATTGGGGGATGCCACTTCGCAATCATCAGAATAATCAGCACTCCAAAGTAGTAGCAGAGTTGGTATATGCAAAAGAAGATCTGATTAAGCTTAAACAAGATATGGCTTCTATCGTAGAAGAAAAAAGAAGGGCAGAGCAAGATATAGAAACCTCTAATTTGAAAATGCAATCTTTTGCAAGCAAAGTAGAAGCGTTAAGGAAGGAAGTTGAGGAACTTAATGAAGAGCTCGT-GCTAGTTGAGCTAGCTCGAATAGAGGCAATCAAAGAATACAGAGCAATTGAAGCTCAA</genome_strand>
        <mrna_strand>CTATATTGTGCATATAGTTCTT-CACATATGTATATGAAGTTCCTAAGATTTTGCCTTAGCAGCAGACACAGCTCCATATTCTCTTTTGATGCCAATTTATAGAGCAATCCAGAAGGAGGGGAGAGTTTCATGAAAGAGAGCTTAGGGTCATCAGTTAAGGCAGCCATTGATTTGTACAAAGGAAATTCTGCAATGAACCAATCCTCAATTACCAAGTCTTTAGAG........................................................................AAGCCATATGCAAGAACCAGCCAACTTCACATAGCAAAAAGGGACATGGGACGACTGGGTGAGAGCAGAAAAGTTGCAGAGGTAGAAAAAGCCCAAGCAGAAACTGAGCTTTTGGACGCGAGAAAGATGGTGAAGGAGCTAAGTTCAAGGATAGAAGAGTTGAATTCAAGATTAAGTGTCCAGAATCAAGATATGGAGAAACTAAAGACGGCAAAAAGAGGGGGAAATTGGGGGATGCCACTTCGCAATCATCAGAATAATCAGCACTCCAAAGTAGTAGCAGAGTTGGTATATGCAAAAGAAGATCTGATTAAGCTTAAACAAGATATGGCTTCTATCGTAGAAGAAAAAAGAAGGGCAGAGCAAGATATAGAAACCTCTAATTTGAAAATGCAATCTTTTGCANGCAAAGTGNAAGCGTTAAGAAGGNAAGTTGAGGAACTTAATGAAGAGCTCGTGGCTAGTTGAGCTAGCTCGAATAGAGGCAATCAAAG-ATACAGAGCAATTGAAGCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E545770" ref_strand="+" ref_description="SGN-E545770 [TUS-68-M16]">
      <seq>gaaaaagaagataaaactttcttgttttgctgattagacggagtgaagggtaagtaaatcattttgtgccactagattgatagttttgagttgccctcgaggaaaagacaagatttttgcttgtaatagcagccaatcatcaatagctttatccctcctcaatttttccttttatttcatggtttttttatggagctcatagcacctgctccaactggcaattccgacatcatttttctgatgtactttccaccaaccattagcagagcaatccagaaggaggggagagtttcatgaaagagagcttagggtcatcagttaaggcagccattgatttgtacaaaggaaattctgcaatgaaccaatcctcaattacaaagtctttagagaagccatatgcaagaaccagccaacttcacatagcaaaaaaggacatgggacgactcggtgagagcagaaaagttgcagaggtagaaaaagcccaagcagaaactgagcttttggacgcgaganagatggtgaaggagctaagttcaaggatagaagagttgaattcaagattaagtgtccagaatcaagatatggagaaactaaagacggcaaaaagagggggaaattgggggatgccacttcgncatcatcagaataatcagcactccaaagtagtagcagagttgggatatgcaaaagacaatctgattaagcttaaacaagatatggcttctatcatagaagaaaaaagaagggcagaagcagaaatagaacctctaatttgaaaatccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="88127" stop="86554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87829" g_stop="87569" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87568" i_stop="87444" i_length="125">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.446" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87443" g_stop="87321" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="389" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87320" i_stop="87249" i_length="72">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.795" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87248" g_stop="86853" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="784" r_length="395" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E545770" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87829" e_stop="87569"/>
          <exon e_start="87443" e_stop="87321"/>
          <exon e_start="87248" e_stop="86853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGACGATAAAACTTTCTTGTTTTGCTGATTAGACGGAGTGAAGGGTAAGTAAATCATTTTGTGCCACTAGATTGATAGTTTTGAGTTGCCCCTTGGAGGAAAAGACAAGATTTTTGCTTGTAATAGCAGCCAATCATCAATAGCTTTATCCCTCCTC-----CTCAATTT-TTCCCT-TTATTTTTATGGAGCTCATAGCACCTGCTCCAACTGGCAATTCCAACATCATTTTTCTGATGTACTTTCCACCAACCATTAGCAGCTTAAATTTACTCTGCTTCTAGCTATATTGTGCATATAGTTCTTCCACATATGTATATGAAGTTCCTAAGATTTTGCCTTAGCAGCAGACACAGCTCCATATTCTCTTTTGATGCCAATTTATAGAGCAATCCAGAAGGAGGGGAGAGTTTCATGAAAGAGAGCTTAGGGTCATCAGTTAAGGCAGCCATTGATTTGTACAAAGGAAATTCTGCAATGAACCAATCCTCAATTACCAAGTCTTTAGAGGTATACTACTATATTTTCATCCAACCATATTTGAGCGTGGACTAACCTTTGTGTTGCATACTCTTTTATCAGAAGCCATATGCAAGAACCAGCCAACTTCACATAGCAAAAAGGGACATGGGACGACTGGGTGAGAGCAGAAAAGTTGCAGAGGTAGAAAAAGCCCAAGCAGAAACTGAGCTTTTGGACGCGAGAAAGATGGTGAAGGAGCTAAGTTCAAGGATAGAAGAGTTGAATTCAAGATTAAGTGTCCAGAATCAAGATATGGAGAAACTAAAGACGGCAAAAAGAGGGGGAAATTGGGGGATGCCACTTCGCAATCATCAGAATAATCAGCACTCCAAAGTAGTAGCAGAGTTGGTATATGCAAAAGAAGATCTGATTAAGCTTAAACAAGATATGGCTTCTATCGTAGAAGAAAAAAGAAGGGCAGAGCAAGATATAGAAACCTCTAATTTGAAAATGCAA</genome_strand>
        <mrna_strand>GAAAAAGAAGATAAAACTTTCTTGTTTTGCTGATTAGACGGAGTGAAGGGTAAGTAAATCATTTTGTGCCACTAGATTGATAGTTTTGAGTTG-CCC-TCGAGGAAAAGACAAGATTTTTGCTTGTAATAGCAGCCAATCATCAATAGCTTTATCCCTCCTCAATTTTTCCTTTTATTTCATGGTTTTTTTATGGAGCTCATAGCACCTGCTCCAACTGGCAATTCCGACATCATTTTTCTGATGTACTTTCCACCAACCATTAGCAG.............................................................................................................................AGCAATCCAGAAGGAGGGGAGAGTTTCATGAAAGAGAGCTTAGGGTCATCAGTTAAGGCAGCCATTGATTTGTACAAAGGAAATTCTGCAATGAACCAATCCTCAATTACAAAGTCTTTAGAG........................................................................AAGCCATATGCAAGAACCAGCCAACTTCACATAGCAAAAAAGGACATGGGACGACTCGGTGAGAGCAGAAAAGTTGCAGAGGTAGAAAAAGCCCAAGCAGAAACTGAGCTTTTGGACGCGAGANAGATGGTGAAGGAGCTAAGTTCAAGGATAGAAGAGTTGAATTCAAGATTAAGTGTCCAGAATCAAGATATGGAGAAACTAAAGACGGCAAAAAGAGGGGGAAATTGGGGGATGCCACTTCGNCATCATCAGAATAATCAGCACTCCAAAGTAGTAGCAGAGTTGGGATATGCAAAAGACAATCTGATTAAGCTTAAACAAGATATGGCTTCTATCATAGAAGAAAAAAGAAGGGCAGAAGCAGAAATAG-AACCTCTAATTTGAAAATCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355706" ref_strand="+" ref_description="SGN-E355706 [cLHT-1-F15]">
      <seq>aaaaagaagataaaactttcttgttttgctgattagacggagtgaagggtaagtaaatcattttgtgccactagattgatagttttgagttgccctcgaggaaaagacaagatttttgcttgtaatagcagccaatcatcaatagctttatccctcctcaatttttccttttatttcatggtttttttatggagctcatagcacctgctccaactggcaattccgacatcatttttctgatgtactttccaccaaccattagcagagcaatccagaaggaggggagagtttcatgaaagagagcttagggtcatcagttaaggcagccattgatttgtacaaaggaaattctgcaatgaaccaatcctcaattacaaagtctttagagaagccatatgcaagaaccagccaacttcacatagcaaaaaaggacatgggacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="88127" stop="86896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87828" g_stop="87569" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87568" i_stop="87444" i_length="125">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.446" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87443" g_stop="87321" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="388" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87320" i_stop="87249" i_length="72">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.795" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87248" g_stop="87196" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="441" r_length="53" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E355706" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87828" e_stop="87569"/>
          <exon e_start="87443" e_stop="87321"/>
          <exon e_start="87248" e_stop="87196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGACGATAAAACTTTCTTGTTTTGCTGATTAGACGGAGTGAAGGGTAAGTAAATCATTTTGTGCCACTAGATTGATAGTTTTGAGTTGCCCCTTGGAGGAAAAGACAAGATTTTTGCTTGTAATAGCAGCCAATCATCAATAGCTTTATCCCTCCTC-----CTCAATTT-TTCCCT-TTATTTTTATGGAGCTCATAGCACCTGCTCCAACTGGCAATTCCAACATCATTTTTCTGATGTACTTTCCACCAACCATTAGCAGCTTAAATTTACTCTGCTTCTAGCTATATTGTGCATATAGTTCTTCCACATATGTATATGAAGTTCCTAAGATTTTGCCTTAGCAGCAGACACAGCTCCATATTCTCTTTTGATGCCAATTTATAGAGCAATCCAGAAGGAGGGGAGAGTTTCATGAAAGAGAGCTTAGGGTCATCAGTTAAGGCAGCCATTGATTTGTACAAAGGAAATTCTGCAATGAACCAATCCTCAATTACCAAGTCTTTAGAGGTATACTACTATATTTTCATCCAACCATATTTGAGCGTGGACTAACCTTTGTGTTGCATACTCTTTTATCAGAAGCCATATGCAAGAACCAGCCAACTTCACATAGCAAAAAGGGACATGGGACG</genome_strand>
        <mrna_strand>AAAAAGAAGATAAAACTTTCTTGTTTTGCTGATTAGACGGAGTGAAGGGTAAGTAAATCATTTTGTGCCACTAGATTGATAGTTTTGAGTTG-CCC-TCGAGGAAAAGACAAGATTTTTGCTTGTAATAGCAGCCAATCATCAATAGCTTTATCCCTCCTCAATTTTTCCTTTTATTTCATGGTTTTTTTATGGAGCTCATAGCACCTGCTCCAACTGGCAATTCCGACATCATTTTTCTGATGTACTTTCCACCAACCATTAGCAG.............................................................................................................................AGCAATCCAGAAGGAGGGGAGAGTTTCATGAAAGAGAGCTTAGGGTCATCAGTTAAGGCAGCCATTGATTTGTACAAAGGAAATTCTGCAATGAACCAATCCTCAATTACAAAGTCTTTAGAG........................................................................AAGCCATATGCAAGAACCAGCCAACTTCACATAGCAAAAAAGGACATGGGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E220814" ref_strand="+" ref_description="SGN-E220814 [cLEL-22-N16](-)">
      <seq>ctttttctgatttgggtcctttgaaggataatgagcggaaggatttgaactatgctgtaaaggagtatttactattagcaggatatcgcttgactgcaatgacattattggaagaggtagtaattgattgaaaggggacttgctgatttcttgatgttcatcactaaactgaagaagaattgcattttattcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="93676" stop="94471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93976" g_stop="94170" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="196" polyA_stop="209"/>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E220814" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>195</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93976" e_stop="94170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTCTGATTTGGGTCCTTTGAAGGATAATGAGCGGAAGGATTTGAACTATGCTGTAAAGGAGTATTTACTATTAGCAGGATATCGCTTGACTGCAATGACATTATTGGAAGAGGTAGTAATTGATTGAAAGGGGACTTGCTGATTTCTTGATGTTCATCACTAAACTGAAGAAGAATTGCATTTTATTCAAC</genome_strand>
        <mrna_strand>CTTTTTCTGATTTGGGTCCTTTGAAGGATAATGAGCGGAAGGATTTGAACTATGCTGTAAAGGAGTATTTACTATTAGCAGGATATCGCTTGACTGCAATGACATTATTGGAAGAGGTAGTAATTGATTGAAAGGGGACTTGCTGATTTCTTGATGTTCATCACTAAACTGAAGAAGAATTGCATTTTATTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E221216" ref_strand="+" ref_description="SGN-E221216 [cLEL-22-N16](-)">
      <seq>ctttttctgatttgggtcctttgaaggataatgagcggaaggatttgaactatgctgtaaaggagtatttactattagcaggatatcgcttgactgcaatgacattattggaagaggtagtaattgattgaaaggggacttgctgatttcttgatgttcatcactaaactgaagaagaattgcattttattcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="93676" stop="94471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93976" g_stop="94170" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="196" polyA_stop="209"/>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E221216" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>195</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93976" e_stop="94170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTCTGATTTGGGTCCTTTGAAGGATAATGAGCGGAAGGATTTGAACTATGCTGTAAAGGAGTATTTACTATTAGCAGGATATCGCTTGACTGCAATGACATTATTGGAAGAGGTAGTAATTGATTGAAAGGGGACTTGCTGATTTCTTGATGTTCATCACTAAACTGAAGAAGAATTGCATTTTATTCAAC</genome_strand>
        <mrna_strand>CTTTTTCTGATTTGGGTCCTTTGAAGGATAATGAGCGGAAGGATTTGAACTATGCTGTAAAGGAGTATTTACTATTAGCAGGATATCGCTTGACTGCAATGACATTATTGGAAGAGGTAGTAATTGATTGAAAGGGGACTTGCTGATTTCTTGATGTTCATCACTAAACTGAAGAAGAATTGCATTTTATTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E737286" ref_strand="+" ref_description="SGN-E737286 [LC09AF04]">
      <seq>cgccgcttgctagttgctcaatcttgtggggaacttgctgaattcgtgcgtcctgagattcgagattctcttatcttgtctattgtgcaacagctcattgaggattctgctacagttgttcgggaggcttctgctcataacttggcgttgcttctgcctctcttcccaagtagggacaaatatttcaaggtcagcctcactacataagcttcgaggcaatcatggagaagaaatgtgacttgagagaatttcccacaaagtaagctccgtagtctaggaatggagcattttccctcccctggtcttaatgtggctgcccaaactgattagatgatagcatatacataaatggatattctccaattcctttattttgttattgtgtgtgtaaaggttgaggagatgatgtttcaattggtgtgtgatccatctggagtggtagtggaaacaacaatcaaggaacttgttccagctttagtaaactgggggaaggaattggatcatttactacaagtcttactatctcatgctttgggctctgctcagcgttgtcaaccactttcaggggtggaaggttctatcgagtcacatcttcgtgctttaggagagagagagcgatggaacatagatgttctgatgcgcttactgtcggagttgtttccatttgtacgcaagaaagctattgatacctgtccattcccattggtttcggacgatgaaagactagtcttttctacttcagttcttgaacagtatgctgggtaatatccccttttacctttacctgcgtttctaatctacctttctattccttcttcaaaggtgctctcacaatgtctagttaatacttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="97292" stop="98829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97592" g_stop="98137" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98138" i_stop="98223" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98224" g_stop="98529" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="852" r_length="306" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E737286" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97592" e_stop="98137"/>
          <exon e_start="98224" e_stop="98529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGCTTGCTAGTTGCTCAATCTTGTGGGGAACTTGCTGAATTCGTGCGTCCTGAGATTCGAGATTCTCTTATCTTGTCTATTGTGCAACAGCTCATTGAGGATTCTGCTACAGTTGTTCGGGAGGCTTCTGCTCATAACTTGGCGTTGCTTCTGCCTCTCTTCCCAAGTAGGGACAAATATTTCAAGGTCAGCCTCACTACATAAGCTTCGAGGCAATCATGGAGAAGAAATGTGACTTGAGAGAATTTCCCACAAAGTAAGCTCCGTAGTCTAGGAATGGAGCATTTTCCCTCCCCTGGTCTTAATGTGGCTGCCCAAACTGATTAGATGATAGCATATACATAAATGGATATTCTCCAATTCCTTTATTTTGTTATTGTGTGTGTAAAGGTTGAGGAGATGATGTTTCAATTGGTGTGTGATCCATCTGGAGTGGTAGTGGAAACAACAATCAAGGAACTTGTTCCAGCTTTAGTAAACTGGGGGAAGGAATTGGATCATTTACTACAAGTCTTACTATCTCATGCTTTGGGCTCTGCTCAGGTATGGATTCTGCATTTACTTAGTTCTCCTCACTGAAGCAGTAACTTGTCTTAAACATGGAGCTGATATATTATCCCTCCTTCCAGCGTTGTCAACCACTTTCAGGGGTGGAAGGTTCTATCGAGTCACATCTTCGTGCTTTAGGAGAGAGAGAGCGATGGAACATAGATGTTCTGATGCGCTTACTGTCGGAGTTGTTTCCATTTGTACGCAAGAAAGCTATTGATACCTGTCCATTCCCATTGGTTTCGGACGATGAAAGACTAGTCTTTTCTACTTCAGTTCTTGAACAGTATGCTGGGTAATATCCCCTTTTACCTTAACCTGCGTTTCTAATCTACCTTTCTATTCCTTCTTCAAAGGTGCTCTCACAATGTCTAGTTAATACTTGC</genome_strand>
        <mrna_strand>CGCCGCTTGCTAGTTGCTCAATCTTGTGGGGAACTTGCTGAATTCGTGCGTCCTGAGATTCGAGATTCTCTTATCTTGTCTATTGTGCAACAGCTCATTGAGGATTCTGCTACAGTTGTTCGGGAGGCTTCTGCTCATAACTTGGCGTTGCTTCTGCCTCTCTTCCCAAGTAGGGACAAATATTTCAAGGTCAGCCTCACTACATAAGCTTCGAGGCAATCATGGAGAAGAAATGTGACTTGAGAGAATTTCCCACAAAGTAAGCTCCGTAGTCTAGGAATGGAGCATTTTCCCTCCCCTGGTCTTAATGTGGCTGCCCAAACTGATTAGATGATAGCATATACATAAATGGATATTCTCCAATTCCTTTATTTTGTTATTGTGTGTGTAAAGGTTGAGGAGATGATGTTTCAATTGGTGTGTGATCCATCTGGAGTGGTAGTGGAAACAACAATCAAGGAACTTGTTCCAGCTTTAGTAAACTGGGGGAAGGAATTGGATCATTTACTACAAGTCTTACTATCTCATGCTTTGGGCTCTGCTCAG......................................................................................CGTTGTCAACCACTTTCAGGGGTGGAAGGTTCTATCGAGTCACATCTTCGTGCTTTAGGAGAGAGAGAGCGATGGAACATAGATGTTCTGATGCGCTTACTGTCGGAGTTGTTTCCATTTGTACGCAAGAAAGCTATTGATACCTGTCCATTCCCATTGGTTTCGGACGATGAAAGACTAGTCTTTTCTACTTCAGTTCTTGAACAGTATGCTGGGTAATATCCCCTTTTACCTTTACCTGCGTTTCTAATCTACCTTTCTATTCCTTCTTCAAAGGTGCTCTCACAATGTCTAGTTAATACTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E539486" ref_strand="+" ref_description="SGN-E539486 [TUS-59-E8]">
      <seq>tttcaattggtgtgtgatccatctggagtggtagtggaaacaacaatcaaggaacttgttccagctttagtaaactgggggaaggaattggatcatttactacaagtcttactatctcatgctttgggctctgctcagcgttgtcaaccactttcaggggtggaaggttctatcgagtcacatcttcgtgctttaggagagagagagcgatggaacatagatgttctgatgcgcttactgtcggagttgtttccatttgtacgcaagaaagctattgatacctgtccattcccattggtttcggacgatgaaagactagtcttttctacttcagttcttgaacagtatgctggaggaaagatggactggccttcttttgagtggttgcatattgactgcttttcagcgttgattgaactagcctctctattacctcagaaggaagataacctaaggaatcgaatcacgcggtttttattggcagtttcagacctgctcggggaaccttacctgacacacatcatgctacctgtattcttggtggcagttggtgatgatggtgatttatcatatttcccctgcacgtgccaatcaagaataagaggtttgaaaccgaaaactgcagtagctgaaagacttgctaccatcggtgtcctgcctcttctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="97700" stop="99350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98000" g_stop="98137" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98138" i_stop="98223" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98224" g_stop="98438" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="353" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98439" i_stop="98553" i_length="115">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98554" g_stop="98671" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="471" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98672" i_stop="98757" i_length="86">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98758" g_stop="98890" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="604" r_length="133" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98891" i_stop="98985" i_length="95">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98986" g_stop="99050" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="669" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E539486" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98000" e_stop="98137"/>
          <exon e_start="98224" e_stop="98438"/>
          <exon e_start="98554" e_stop="98671"/>
          <exon e_start="98758" e_stop="98890"/>
          <exon e_start="98986" e_stop="99050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAATTGGTGTGTGATCCATCTGGAGTGGTAGTGGAAACAACAATCAAGGAACTTGTTCCAGCTTTAGTAAACTGGGGGAAGGAATTGGATCATTTACTACAAGTCTTACTATCTCATGCTTTGGGCTCTGCTCAGGTATGGATTCTGCATTTACTTAGTTCTCCTCACTGAAGCAGTAACTTGTCTTAAACATGGAGCTGATATATTATCCCTCCTTCCAGCGTTGTCAACCACTTTCAGGGGTGGAAGGTTCTATCGAGTCACATCTTCGTGCTTTAGGAGAGAGAGAGCGATGGAACATAGATGTTCTGATGCGCTTACTGTCGGAGTTGTTTCCATTTGTACGCAAGAAAGCTATTGATACCTGTCCATTCCCATTGGTTTCGGACGATGAAAGACTAGTCTTTTCTACTTCAGTTCTTGAACAGTATGCTGGGTAATATCCCCTTTTACCTTAACCTGCGTTTCTAATCTACCTTTCTATTCCTTCTTCAAAGGTGCTCTCACAATGTCTAGTTAATACTTGCAAGATATTTGAATTGTCTATGCAGAGGAAAGATGGACTGGCCTTCTTTTGAGTGGTTGCATATTGACTGCTTTTCAGCGTTGATTGAACTAGCCTCTCTATTACCTCAGAAGGAAGATAACCTAAGGAATCGAATCACGCGGGTAGCTTGAATTGTTTCTCTTAATTTTTGATGCTTTAGTTTTAGAATTGCCTCCTTTCCGGATTCGTCTTTAATTTTGCAATGCAGTTTTTATTGGCAGTTTCAGACCTGCTCGGGGAACCTTACCTGACACACATCATGCTACCTGTATTCTTGGTGGCAGTTGGTGATGATGGTGATTTATCATATTT-CCCTGCAACGTGCCAATCAAGAATAAGAGGTAATGAGTTAAAAACTTCTTGTCTCCATCAAACCTTTTAAATGATAGGTCATGTTTAGACCTTATCAAATTGATTTTGATTTGCTCCTCAACAGGTTTGAAACCGAAAACTGCAGTAGCTGAAAGACTTGCTACCATCGGTGTCCTGCCTCTTCTGCTG</genome_strand>
        <mrna_strand>TTTCAATTGGTGTGTGATCCATCTGGAGTGGTAGTGGAAACAACAATCAAGGAACTTGTTCCAGCTTTAGTAAACTGGGGGAAGGAATTGGATCATTTACTACAAGTCTTACTATCTCATGCTTTGGGCTCTGCTCAG......................................................................................CGTTGTCAACCACTTTCAGGGGTGGAAGGTTCTATCGAGTCACATCTTCGTGCTTTAGGAGAGAGAGAGCGATGGAACATAGATGTTCTGATGCGCTTACTGTCGGAGTTGTTTCCATTTGTACGCAAGAAAGCTATTGATACCTGTCCATTCCCATTGGTTTCGGACGATGAAAGACTAGTCTTTTCTACTTCAGTTCTTGAACAGTATGCTGG...................................................................................................................AGGAAAGATGGACTGGCCTTCTTTTGAGTGGTTGCATATTGACTGCTTTTCAGCGTTGATTGAACTAGCCTCTCTATTACCTCAGAAGGAAGATAACCTAAGGAATCGAATCACGCGG......................................................................................TTTTTATTGGCAGTTTCAGACCTGCTCGGGGAACCTTACCTGACACACATCATGCTACCTGTATTCTTGGTGGCAGTTGGTGATGATGGTGATTTATCATATTTCCCCTGC-ACGTGCCAATCAAGAATAAGAG...............................................................................................GTTTGAAACCGAAAACTGCAGTAGCTGAAAGACTTGCTACCATCGGTGTCCTGCCTCTTCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282574" ref_strand="+" ref_description="SGN-E282574 [cLER-18-J10]">
      <seq>ttcaattgtatagtgatccatctggagtggtagtggtaacaacaatcaaggaacttgttccagctttagtaaactgggggaaggaattggatcatttactacaagtcttactatctcatgctttgggctctgctcagcgttgtcaaccactttcaggggtggaaggttctatcgagtcacatcttcgtgctttaggagagagagagcgatggaacatatatgttctgatgcgcttactgtcggagttgattccatttgtacgcaagaaagctattgatacctgtccattcccattggtttcggacgatgaaagactagacttttctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="97701" stop="98715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98001" g_stop="98137" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98138" i_stop="98223" i_length="86">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98224" g_stop="98415" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="329" r_length="192" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E282574" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98001" e_stop="98137"/>
          <exon e_start="98224" e_stop="98415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATTGGTGTGTGATCCATCTGGAGTGGTAGTGGAAACAACAATCAAGGAACTTGTTCCAGCTTTAGTAAACTGGGGGAAGGAATTGGATCATTTACTACAAGTCTTACTATCTCATGCTTTGGGCTCTGCTCAGGTATGGATTCTGCATTTACTTAGTTCTCCTCACTGAAGCAGTAACTTGTCTTAAACATGGAGCTGATATATTATCCCTCCTTCCAGCGTTGTCAACCACTTTCAGGGGTGGAAGGTTCTATCGAGTCACATCTTCGTGCTTTAGGAGAGAGAGAGCGATGGAACATAGATGTTCTGATGCGCTTACTGTCGGAGTTGTTTCCATTTGTACGCAAGAAAGCTATTGATACCTGTCCATTCCCATTGGTTTCGGACGATGAAAGACTAGTCTTTTCTACT</genome_strand>
        <mrna_strand>TTCAATTGTATAGTGATCCATCTGGAGTGGTAGTGGTAACAACAATCAAGGAACTTGTTCCAGCTTTAGTAAACTGGGGGAAGGAATTGGATCATTTACTACAAGTCTTACTATCTCATGCTTTGGGCTCTGCTCAG......................................................................................CGTTGTCAACCACTTTCAGGGGTGGAAGGTTCTATCGAGTCACATCTTCGTGCTTTAGGAGAGAGAGAGCGATGGAACATATATGTTCTGATGCGCTTACTGTCGGAGTTGATTCCATTTGTACGCAAGAAAGCTATTGATACCTGTCCATTCCCATTGGTTTCGGACGATGAAAGACTAGACTTTTCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E276105" ref_strand="+" ref_description="SGN-E276105 [cLEN-12-L23]">
      <seq>tcagcgttgtcaaccactttcaggggtggaaggttctatcgagtcacatcttcgtgctttaggagagagagagcgatggaacatagatgttctgatgcgcttactgtcggagttgtttccatttgtacgcaagaaagctattgatacctgtccattcccattggtttcggacgatgaaagactagtcttttctacttcagttcttgaacagtatgctggaggaaagatggactggccttcttttgagtggttgcatattgactgcttttcagcgttgattgaactagcctctctattacctcagaaggaagataacctaaggaatcgaatcacgcggtttttattggcagtttcagacctgctcggggaaccttacctgacacacatcatgctacctgtattcttggtggcagttggtgatgatggtgatttatcatatttccctgcaacgtgccaatcaagaataagaggtttgaaaccgaaaactgcagtagctgaaagacttgctaccatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="97921" stop="99330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98220" g_stop="98438" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98439" i_stop="98553" i_length="115">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98554" g_stop="98671" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="337" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98672" i_stop="98757" i_length="86">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98758" g_stop="98890" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="470" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98891" i_stop="98985" i_length="95">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98986" g_stop="99030" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="515" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E276105" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98220" e_stop="98438"/>
          <exon e_start="98554" e_stop="98671"/>
          <exon e_start="98758" e_stop="98890"/>
          <exon e_start="98986" e_stop="99030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGCGTTGTCAACCACTTTCAGGGGTGGAAGGTTCTATCGAGTCACATCTTCGTGCTTTAGGAGAGAGAGAGCGATGGAACATAGATGTTCTGATGCGCTTACTGTCGGAGTTGTTTCCATTTGTACGCAAGAAAGCTATTGATACCTGTCCATTCCCATTGGTTTCGGACGATGAAAGACTAGTCTTTTCTACTTCAGTTCTTGAACAGTATGCTGGGTAATATCCCCTTTTACCTTAACCTGCGTTTCTAATCTACCTTTCTATTCCTTCTTCAAAGGTGCTCTCACAATGTCTAGTTAATACTTGCAAGATATTTGAATTGTCTATGCAGAGGAAAGATGGACTGGCCTTCTTTTGAGTGGTTGCATATTGACTGCTTTTCAGCGTTGATTGAACTAGCCTCTCTATTACCTCAGAAGGAAGATAACCTAAGGAATCGAATCACGCGGGTAGCTTGAATTGTTTCTCTTAATTTTTGATGCTTTAGTTTTAGAATTGCCTCCTTTCCGGATTCGTCTTTAATTTTGCAATGCAGTTTTTATTGGCAGTTTCAGACCTGCTCGGGGAACCTTACCTGACACACATCATGCTACCTGTATTCTTGGTGGCAGTTGGTGATGATGGTGATTTATCATATTTCCCTGCAACGTGCCAATCAAGAATAAGAGGTAATGAGTTAAAAACTTCTTGTCTCCATCAAACCTTTTAAATGATAGGTCATGTTTAGACCTTATCAAATTGATTTTGATTTGCTCCTCAACAGGTTTGAAACCGAAAACTGCAGTAGCTGAAAGACTTGCTACCATCG</genome_strand>
        <mrna_strand>TCAGCGTTGTCAACCACTTTCAGGGGTGGAAGGTTCTATCGAGTCACATCTTCGTGCTTTAGGAGAGAGAGAGCGATGGAACATAGATGTTCTGATGCGCTTACTGTCGGAGTTGTTTCCATTTGTACGCAAGAAAGCTATTGATACCTGTCCATTCCCATTGGTTTCGGACGATGAAAGACTAGTCTTTTCTACTTCAGTTCTTGAACAGTATGCTGG...................................................................................................................AGGAAAGATGGACTGGCCTTCTTTTGAGTGGTTGCATATTGACTGCTTTTCAGCGTTGATTGAACTAGCCTCTCTATTACCTCAGAAGGAAGATAACCTAAGGAATCGAATCACGCGG......................................................................................TTTTTATTGGCAGTTTCAGACCTGCTCGGGGAACCTTACCTGACACACATCATGCTACCTGTATTCTTGGTGGCAGTTGGTGATGATGGTGATTTATCATATTTCCCTGCAACGTGCCAATCAAGAATAAGAG...............................................................................................GTTTGAAACCGAAAACTGCAGTAGCTGAAAGACTTGCTACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E235967" ref_strand="+" ref_description="SGN-E235967 [cLED-16-M11]">
      <seq>ggggaaccttacctgacacacatcatgctttctgtattcttggtggcagttggtgatgatggtgatttatcatatttccctgcaacgtgccaatcaagaataagaggtttgaaaccgaaaactgcagtagctgaaagacttgctaccatcggtgtcctgcctcttctgctggctggtgttttaggatctcctaggaagcatgaactactgacagagtacttgagaaatctcttgattcaaacttcaggacaagagagtcagacagtgaagcgcgagattttcttttctgttcgctttctttgcactttcgatgaacatcacaatatgatttttaacatcctctgggaaatggttgtgagttctgaaataacatgaatgcaacagctgccaatcttttttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="98485" stop="99659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98785" g_stop="98890" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98891" i_stop="98985" i_length="95">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98986" g_stop="99181" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="302" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99182" i_stop="99259" i_length="78">
            <donor d_prob="0.431" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99260" g_stop="99360" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="402" r_length="100" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E235967" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98785" e_stop="98890"/>
          <exon e_start="98986" e_stop="99181"/>
          <exon e_start="99260" e_stop="99360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGAACCTTACCTGACACACATCATGCTACCTGTATTCTTGGTGGCAGTTGGTGATGATGGTGATTTATCATATTTCCCTGCAACGTGCCAATCAAGAATAAGAGGTAATGAGTTAAAAACTTCTTGTCTCCATCAAACCTTTTAAATGATAGGTCATGTTTAGACCTTATCAAATTGATTTTGATTTGCTCCTCAACAGGTTTGAAACCGAAAACTGCAGTAGCTGAAAGACTTGCTACCATCGGTGTCCTGCCTCTTCTGCTGGCTGGTGTTTTAGGATCTCCTAGGAAGCATGAACTACTGACAGAGTACTTGAGAAATCTCTTGATTCAAACTTCAGGACAAGAGAGTCAGACAGTGAAGCGCGAGATTTTCTTTTCTGTTCGCTTTCTTTGGTTTGTGCCATTTTAATAAAGGCATTACAGTTCTGTGTCTGAACTCCTTAGATGATGGCTGACTATATTTTTCTGCAGCACTTTCGATGAACATCACAATATGATTTTTAACATCCTCTGGGAAATGGTTGTGAGTTCTGAAATAAACATGAAGGCAACAGCTGCCAATCTTTTTAAAG</genome_strand>
        <mrna_strand>GGGGAACCTTACCTGACACACATCATGCTTTCTGTATTCTTGGTGGCAGTTGGTGATGATGGTGATTTATCATATTTCCCTGCAACGTGCCAATCAAGAATAAGAG...............................................................................................GTTTGAAACCGAAAACTGCAGTAGCTGAAAGACTTGCTACCATCGGTGTCCTGCCTCTTCTGCTGGCTGGTGTTTTAGGATCTCCTAGGAAGCATGAACTACTGACAGAGTACTTGAGAAATCTCTTGATTCAAACTTCAGGACAAGAGAGTCAGACAGTGAAGCGCGAGATTTTCTTTTCTGTTCGCTTTCTTTG..............................................................................CACTTTCGATGAACATCACAATATGATTTTTAACATCCTCTGGGAAATGGTTGTGAGTTCTGAAAT-AACATGAATGCAACAGCTGCCAATCTTTTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E704984" ref_strand="+" ref_description="SGN-E704984 [FA25DD02]">
      <seq>tgagttctgaaataaacatgaaggcaacagctgccaatctttttaaagtcattgttccatgtattgatgccaaggttgcctcaacacatgttttgcctgctcttgtaacgcttggttctgaccaaaacttgaatgtgaaatatgccagtattgatgcttttggagctgtggcgcagcagtataaaaatgatgcgattgttgataaaatacgtgttcaaatggatgcttttcttgaggatggatcacatgaagctacgttagctgtagttcgtgcattggtgatggcagtgccacataccacggagggacttagagattatttgttgtccaagattttcttacttacagcaacacctcctccttcaagtgacatgatgcgtcgtcgtgagagagccaacacattttgtgaatcaattcgtgctcttgatgctactggtttgctccttttaattattcttcttctctttcattcatctctttactttctgaagatataaatgttcttcaaaatgatcagcctccaggtttagctgcttcttgagataaatcagagtacaatatactatgtattgcagtggactgatacaggtggttgatatcctgatttttggttgtgaaactacctttagcaatcatggttgatcaaagtgattagttgagttttttcccatctaagaagagttaattacctaaaaattgaccgattttttacctaaatacatgccgaagttaacataaatggttgattgtgatttgttgggtttagtgtgcatccttttcttgttcatattaatacaagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="99013" stop="100703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99313" g_stop="99365" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99366" i_stop="99443" i_length="78">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99444" g_stop="99584" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="194" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99585" i_stop="99678" i_length="94">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99679" g_stop="99802" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="318" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99803" i_stop="99919" i_length="117">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99920" g_stop="100403" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="802" r_length="484" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E704984" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99313" e_stop="99365"/>
          <exon e_start="99444" e_stop="99584"/>
          <exon e_start="99679" e_stop="99802"/>
          <exon e_start="99920" e_stop="100403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTTCTGAAATAAACATGAAGGCAACAGCTGCCAATCTTTTTAAAGTCATTGTAAGACCTTTGGTTTTTGTGAAATTGCTTAAATTTAAGCATGGTCTACGACTTTGATCATTCTTGTTAGTTCACCAGGTTCCATGTATTGATGCCAAGGTTGCCTCAACACATGTTTTGCCTGCTCTTGTAACGCTTGGTTCTGACCAAAACTTGAATGTGAAATATGCCAGTATTGATGCTTTTGGAGCTGTGGCGCAGCAGTATAAAAATGATGCGGTATAGGGTTTTTGCTTAAATATCTGATGTCATTCTTGTTCTGTGTTCATCTAGAGGCTTTAATGAGACGTTCTGTTCTAACTTTTCTTGCTAGATTGTTGATAAAATACGTGTTCAAATGGATGCTTTTCTTGAGGATGGATCACATGAAGCTACGTTAGCTGTAGTTCGTGCATTGGTGATGGCAGTGCCACATACCACGGAGGGACTTAGAGATTATATCCTCAACCTCTTAGCTTTCATGCACTGCTTGAAGTAGCAATGCATTTTTATAATGTGTGCCAGAACTAGTTTTGATTTCTAATTCTCATCAACTTTCTTTAACTTTAGCATACATTTGTTGTCCAAGATTTTCTTACTTACAGCAACACCTCCTCCTTCAAGTGACATGATGCGTCGTCGTGAGAGAGCCAACACATTTTGTGAATCAATTCGTGCTCTTGATGCTACTGGTTTGCTCCTTTTAATTATTCTTCTTCTCTTTCATTCATCTCTTTACTTTCTGAAGATATAAATGTTCTTCAAAATGATCAGCCTCCAGGTTTAGCTGCTTCTTGAGATAAATCAGAGTACAATATACTATGTATTGCAGTGGACTGATACAGGTGGTTGATATCCTGATTTTTGGTTGTGAAACTACCTTTAGCAATCATGGTTGATCAAAGTGATTAGTTGAGTTTTTTCCCATCTAAGAAGAGTTAATTACCTAAAAATTGACCGATTTTTTACCTAAATACATGCCGAAGTTAACATAAATGGTTGATTGTGATTTGTTGGGTTTAGTGTGCATCCTTTTCTTGTTCATATTAATACAAGTGA</genome_strand>
        <mrna_strand>TGAGTTCTGAAATAAACATGAAGGCAACAGCTGCCAATCTTTTTAAAGTCATT..............................................................................GTTCCATGTATTGATGCCAAGGTTGCCTCAACACATGTTTTGCCTGCTCTTGTAACGCTTGGTTCTGACCAAAACTTGAATGTGAAATATGCCAGTATTGATGCTTTTGGAGCTGTGGCGCAGCAGTATAAAAATGATGCG..............................................................................................ATTGTTGATAAAATACGTGTTCAAATGGATGCTTTTCTTGAGGATGGATCACATGAAGCTACGTTAGCTGTAGTTCGTGCATTGGTGATGGCAGTGCCACATACCACGGAGGGACTTAGAGATT.....................................................................................................................ATTTGTTGTCCAAGATTTTCTTACTTACAGCAACACCTCCTCCTTCAAGTGACATGATGCGTCGTCGTGAGAGAGCCAACACATTTTGTGAATCAATTCGTGCTCTTGATGCTACTGGTTTGCTCCTTTTAATTATTCTTCTTCTCTTTCATTCATCTCTTTACTTTCTGAAGATATAAATGTTCTTCAAAATGATCAGCCTCCAGGTTTAGCTGCTTCTTGAGATAAATCAGAGTACAATATACTATGTATTGCAGTGGACTGATACAGGTGGTTGATATCCTGATTTTTGGTTGTGAAACTACCTTTAGCAATCATGGTTGATCAAAGTGATTAGTTGAGTTTTTTCCCATCTAAGAAGAGTTAATTACCTAAAAATTGACCGATTTTTTACCTAAATACATGCCGAAGTTAACATAAATGGTTGATTGTGATTTGTTGGGTTTAGTGTGCATCCTTTTCTTGTTCATATTAATACAAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E539484" ref_strand="+" ref_description="SGN-E539484 [TUS-59-E8](-)">
      <seq>agtgacatgatgcgtcgtcgtgagagagccaacacattttgtgaatcaattcgtgctcttgatgctactgatctttctgcttcaagtgtcagagacttccttctacctgcaattcaaaatctgttaaaagatgctgattctcttgatccagcacacaaagaagctctggagatcgtaatgagggaaagatctggtggaacatttgatacgattagtaaggtaatgggtgctcatctgggaattgcgtcatcagtaagcagcttctttggcgaaggtggtttactagggaaaagggaagctggagatccaacatcaccaccagcaccagtggaagttgaacctctgaggcctgtcctcacacatgctgcaccagcagaagacactagatttaggcggatcatgagaggtggttttacagacatgctcagaggaaaagcaaagggcgctggggatactcccccaagtcaatgataatggctctttcatctgcaggagaattaaaaaggaaagtaagttctgtatgttgtgcaatagactacaatgcttccatttgttgattctgcgctgaagttttcccttcacagggatgaaattttgcaatttatttcattctttatgtacaagaaacgtaatgaattcgacaacaaaacgaggagaaagtgtatacatttactagttgtacaaaatgatatgggagattcatagctgtcttgttttcatgtactctaaccagtaaccaacagacctttgataatatacatatattaaaataaaaaagaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="99667" stop="101815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99967" g_stop="100036" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100037" i_stop="100805" i_length="769">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100806" g_stop="101508" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="773" r_length="703" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="774" polyA_stop="788"/>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E539484" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99967" e_stop="100036"/>
          <exon e_start="100806" e_stop="101508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGACATGATGCGTCGTCGTGAGAGAGCCAACACATTTTGTGAATCAATTCGTGCTCTTGATGCTACTGGTTTGCTCCTTTTAATTATTCTTCTTCTCTTTCATTCATCTCTTTACTTTCTGAAGATATAAATGTTCTTCAAAATGATCAGCCTCCAGGTTTAGCTGCTTCTTGAGATAAATCAGAGTACAATATACTATGTATTGCAGTGGACTGATACAGGTGGTTGATATCCTGATTTTTGGTTGTGAAACTACCTTTAGCAATCATGGTTGATCAAAGTGATTAGTTGAGTTTTTTCCCATCTAAGAAGAGTTAATTACCTAAAAATTGACCGATTTTTTACCTAAATACATGCCGAAGTTAACATAAATGGTTGATTGTGATTTGTTGGGTTTAGTGTGCATCCTTTTCTTGTTCATATTAATACAAGTGAGTGACGAACCCTGTCTTGAGATAGTTAAGTGAGAGTCAGGAAACTCTCAAATTAGTGAAGAGGCCGTCGTTACCTTCGGGATCGATGAAGGTTTGGCAGGAAGATGACTGCTGGGACCGTCTCTACTGAACACTAAAGCATTCATTATGTAGTCTCTAGGCTATGAAGGTGCAACTGATCTATCAAATAAATGTCAGAGGGGATGCAGAAGTCAGAAGAAGGTCCTAGGAGAAGTTCTATTGATCTCTTTTTATCTGGTTGTGTAGTGTAATACAAAAATATAACGACATGTACTATTGAAGCCTAAATGTCGCACACTTGCCTTTTCCTGCTTTTTGGCATTTTGTCTGGACGATTTCATTGAAATCTTCCTTTACTCAGTTTATGATTGTAATATTGCAGATCTTTCTGCTTCAAGTGTCAGAGACTTCCTTCTACCTGCAATTCAAAATCTGTTAAAAGATGCTGATTCTCTTGATCCAGCACACAAAGAAGCTCTGGAGATCGTAATGAGGGAAAGATCTGGTGGAACATTTGATACGATTAGTAAGGTAATGGGTGCTCATCTGGGAATTGCGTCATCAGTAAGCAGCTTCTTTGGCGAAGGTGGTTTACTAGGGAAAAGGGAAGCTGGAGATCCAACATCACCACCAGCACCAGTGGAAGTTGAACCTCTGAGGCCTGTCCTCACACATGCAGCACCAGCAGAAGACACTAGATTTAGGCGGATCATGAGAGGTGGTTTTACAGACATGCTCAGAGGAAAAGCAAAGGGCGCTGGGGATACTCCCCCAAGTCAATGATAATGGCTCTTTCATCTGCAGGAGAATTAAAAAGGAAAGTAAGTTCTGTATGTTGTGCAATAGACTACAATGCTTCCATTTGTTGATTCTGCGCTGAAGTTTTCCCTTCACAGGGATGAAATTTTGCAATTTATTTCATTCTTTATGTACAAGAAACGTAATGAATTCGACAACAAAACGAGGAGAAAGTGTATACATTTACTAGTTGTACAAAATGATATGGGAGATTCATAGCTGTCTTGTTTTCATGTACTCTAACCAGTAACCAACAGACCTTTGATAATATACATATATTAAAATAG</genome_strand>
        <mrna_strand>AGTGACATGATGCGTCGTCGTGAGAGAGCCAACACATTTTGTGAATCAATTCGTGCTCTTGATGCTACTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTCTGCTTCAAGTGTCAGAGACTTCCTTCTACCTGCAATTCAAAATCTGTTAAAAGATGCTGATTCTCTTGATCCAGCACACAAAGAAGCTCTGGAGATCGTAATGAGGGAAAGATCTGGTGGAACATTTGATACGATTAGTAAGGTAATGGGTGCTCATCTGGGAATTGCGTCATCAGTAAGCAGCTTCTTTGGCGAAGGTGGTTTACTAGGGAAAAGGGAAGCTGGAGATCCAACATCACCACCAGCACCAGTGGAAGTTGAACCTCTGAGGCCTGTCCTCACACATGCTGCACCAGCAGAAGACACTAGATTTAGGCGGATCATGAGAGGTGGTTTTACAGACATGCTCAGAGGAAAAGCAAAGGGCGCTGGGGATACTCCCCCAAGTCAATGATAATGGCTCTTTCATCTGCAGGAGAATTAAAAAGGAAAGTAAGTTCTGTATGTTGTGCAATAGACTACAATGCTTCCATTTGTTGATTCTGCGCTGAAGTTTTCCCTTCACAGGGATGAAATTTTGCAATTTATTTCATTCTTTATGTACAAGAAACGTAATGAATTCGACAACAAAACGAGGAGAAAGTGTATACATTTACTAGTTGTACAAAATGATATGGGAGATTCATAGCTGTCTTGTTTTCATGTACTCTAACCAGTAACCAACAGACCTTTGATAATATACATATATTAAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E465598" ref_strand="+" ref_description="SGN-E465598 [cPRO-21-L11]">
      <seq>aagctctggagatcgtaatgagggaaagatctggtggaacatttgatacgattagtaaggtaatgggtgctcatctgggaattgcatcatcagtaagcagcttcttcggtgaaggtggtttactagggaaaagggaagctggagatccaacatcaccaccaccaccagtggaggttgaacctctgaggcctgtcctcacacatgcagcaccagcagaagacacaagatttaggcggatcatgagaggtggttttacagacatgctcagaggaaaagcaaagggcaccgaggatactcccccaagtcaatgataatggctcttccttctgcaggagatttaaaaaggaaagtaagttctgtatgttgtgtagtagactacgatgcttccatttgttgattctgcgcccaagttttcccttcacagggatgaaattttgcaatttatttgattcttcatgtacaagaaatgtaatgaatttgacaacgaaacgagcagaaagtgtatacatttactagttgtacaaatgatatgagagattcatagcagtcttgtttccccgaaactctaaccagcaaccaaacagacctttgataataatagacatattaaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="100596" stop="101815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100896" g_stop="101515" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E465598" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E465598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100896" e_stop="101515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTCTGGAGATCGTAATGAGGGAAAGATCTGGTGGAACATTTGATACGATTAGTAAGGTAATGGGTGCTCATCTGGGAATTGCGTCATCAGTAAGCAGCTTCTTTGGCGAAGGTGGTTTACTAGGGAAAAGGGAAGCTGGAGATCCAACATCACCACCAGCACCAGTGGAAGTTGAACCTCTGAGGCCTGTCCTCACACATGCAGCACCAGCAGAAGACACTAGATTTAGGCGGATCATGAGAGGTGGTTTTACAGACATGCTCAGAGGAAAAGCAAAGGGCGCTGGGGATACTCCCCCAAGTCAATGATAATGGCTCTTTCATCTGCAGGAGAATTAAAAAGGAAAGTAAGTTCTGTATGTTGTGCAATAGACTACAATGCTTCCATTTGTTGATTCTGCGCTGAAGTTTTCCCTTCACAGGGATGAAATTTTGCAATTTATTTCATTCTTTATGTACAAGAAACGTAATGAATTCGACAACAAAACGAGGAGAAAGTGTATACATTTACTAGTTGTACAAAATGATATGGGAGATTCATAGCTGTCTTGTTTTCATG-TACTCTAACCAGTAACC-AACAGACCTTTGATAAT-ATACATATATTAAAATAGATACATA</genome_strand>
        <mrna_strand>AAGCTCTGGAGATCGTAATGAGGGAAAGATCTGGTGGAACATTTGATACGATTAGTAAGGTAATGGGTGCTCATCTGGGAATTGCATCATCAGTAAGCAGCTTCTTCGGTGAAGGTGGTTTACTAGGGAAAAGGGAAGCTGGAGATCCAACATCACCACCACCACCAGTGGAGGTTGAACCTCTGAGGCCTGTCCTCACACATGCAGCACCAGCAGAAGACACAAGATTTAGGCGGATCATGAGAGGTGGTTTTACAGACATGCTCAGAGGAAAAGCAAAGGGCACCGAGGATACTCCCCCAAGTCAATGATAATGGCTCTTCCTTCTGCAGGAGATTTAAAAAGGAAAGTAAGTTCTGTATGTTGTGTAGTAGACTACGATGCTTCCATTTGTTGATTCTGCGCCCAAGTTTTCCCTTCACAGGGATGAAATTTTGCAATTTATTTGATTCTTCATGTACAAGAAATGTAATGAATTTGACAACGAAACGAGCAGAAAGTGTATACATTTACTAGTTGTAC-AAATGATATGAGAGATTCATAGCAGTCTTGTTTCCCCGAAACTCTAACCAGCAACCAAACAGACCTTTGATAATAATAGACATATTAAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E465457" ref_strand="+" ref_description="SGN-E465457 [cPRO-21-M11]">
      <seq>aagctctggagatcgtaatgagggaaagatctggtggaacatttgatacgattagtaaggtaatgggtgctcatctgggaattgcatcatcagtaagcagcttcttcggtgaaggtggtttactagggaaaagggaagctggagatccaacatcaccaccaccaccagtggaggttgaacctctgaggcctgtcctcacacatgcagcaccagcagaagacacaagatttaggcggatcatgagaggtggttttacagacatgctcagaggaaaagcaaagggcaccgaggatactcccccaagtcaatgataatggctcttccttctgcaggagatttaaaaaggaaagtaagttctgtatgttgtgtagtaaactaccatgcttccatttgttgattctgcgcccaagttttcccttcacagggatgaaattttgcaatttatttgattcttcctgtacaagaaatgtaatgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="100596" stop="101673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100896" g_stop="101373" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E465457" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E465457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100896" e_stop="101373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTCTGGAGATCGTAATGAGGGAAAGATCTGGTGGAACATTTGATACGATTAGTAAGGTAATGGGTGCTCATCTGGGAATTGCGTCATCAGTAAGCAGCTTCTTTGGCGAAGGTGGTTTACTAGGGAAAAGGGAAGCTGGAGATCCAACATCACCACCAGCACCAGTGGAAGTTGAACCTCTGAGGCCTGTCCTCACACATGCAGCACCAGCAGAAGACACTAGATTTAGGCGGATCATGAGAGGTGGTTTTACAGACATGCTCAGAGGAAAAGCAAAGGGCGCTGGGGATACTCCCCCAAGTCAATGATAATGGCTCTTTCATCTGCAGGAGAATTAAAAAGGAAAGTAAGTTCTGTATGTTGTGCAATAGACTACAATGCTTCCATTTGTTGATTCTGCGCTGAAGTTTTCCCTTCACAGGGATGAAATTTTGCAATTTATTTCATTCTTTATGTACAAGAAACGTAATGAATT</genome_strand>
        <mrna_strand>AAGCTCTGGAGATCGTAATGAGGGAAAGATCTGGTGGAACATTTGATACGATTAGTAAGGTAATGGGTGCTCATCTGGGAATTGCATCATCAGTAAGCAGCTTCTTCGGTGAAGGTGGTTTACTAGGGAAAAGGGAAGCTGGAGATCCAACATCACCACCACCACCAGTGGAGGTTGAACCTCTGAGGCCTGTCCTCACACATGCAGCACCAGCAGAAGACACAAGATTTAGGCGGATCATGAGAGGTGGTTTTACAGACATGCTCAGAGGAAAAGCAAAGGGCACCGAGGATACTCCCCCAAGTCAATGATAATGGCTCTTCCTTCTGCAGGAGATTTAAAAAGGAAAGTAAGTTCTGTATGTTGTGTAGTAAACTACCATGCTTCCATTTGTTGATTCTGCGCCCAAGTTTTCCCTTCACAGGGATGAAATTTTGCAATTTATTTGATTCTTCCTGTACAAGAAATGTAATGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E723016" ref_strand="+" ref_description="SGN-E723016 [FC19AC10]">
      <seq>tcggccgaattgatccatcacttccatcactttacttaaaaaatttctcttataatttaaattgtataatgaaaatgactaaggtttgttcttttgtggcagtaatgttggtgatgatccttgtttgtgatcaatttggggctaacgaggcggcgacatgcagcgcctcgcagctgagcccgtgtttgggtgcgatccagggtgggaccgcaccatcacaggattgttgtgctaggcttaaaaaccagcagccttgcatttgtggatttatgaaggatcctaatttgaggcaatatgttaattctccaaatgctaggaaagttgctggacaatgtggtgtaagcattcctagttgttaattaggtttacaacattttacttgttgtatacatatgggtcttatgtattatggaaaaaaatatatatatgtaagactttaaataaaaaatggttgtaatctgtgttcaagtgtgttatgatgaatgaatcttgtggcttttgattttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="104019" stop="105122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104314" g_stop="104822" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E723016" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104314" e_stop="104822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACTACTTCATCCATCACTTCCATTACATTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCTGTGTTCAAGTGTGTTATGATGAATGAATCTTGTGGCTTTTGATTTTATT</genome_strand>
        <mrna_strand>TCGGCCGAATTGATCCATCACTTCCATCACTTTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAAAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCTGTGTTCAAGTGTGTTATGATGAATGAATCTTGTGGCTTTTGATTTTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E721305" ref_strand="+" ref_description="SGN-E721305 [FC13BG04]">
      <seq>cggccgaattgatccatcacttccattacattacttaaaaaatttctcttataatttaaattgtataatgaaaatgactaaggtttgttcttttgtggcagtaatgttggtgatgatccttgtttgtgatcaatttggggctaacgaggcggcgacatgcagcgcctcgcagctgagcccgtgtttgggtgcgatccagggtgggaccgcaccatcacaggattgttgtgctaggcttaaaaaccagcagccttgcatttgtggatttatgaaggatcctaatttgaggcaatatgttaattctccaaatgctaggaaagttgctggacaatgtggtgtaagcattcctagttgttaattaggtttacaacattttacttgttgtatacatatgggtcttatgtattatggaaaaaaatatatatatgtaagactttaaataaaaaatggttgtaatctgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="104019" stop="105074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104315" g_stop="104773" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="461" polyA_stop="509"/>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E721305" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104315" e_stop="104773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTACTTCATCCATCACTTCCATTACATTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCT</genome_strand>
        <mrna_strand>CGGCCGAATTGATCCATCACTTCCATTACATTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAAAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E718465" ref_strand="+" ref_description="SGN-E718465 [FC04DA07]">
      <seq>gggcgaatggcggccaatcggccgaattgatccatcacttccattacattacttaaaaaatttctcttataatttaaattgtataatgaaaatgactaaggtttgttcttttgtggcagtaatgttggtgatgatccttgtttgtgatcaatttggggctaacgaggcggcgacatgcagcgcctcgcagctgagcccgtgtttgggtgcgatccagggtgggaccgcaccatcacaggattgttgtgctaggcttaagaaccagcagccttgcatttgtggatttatgaaggatcctaatttgaggcaatatgttaattctccaaatgctaggaaagttgctggacaatgtggtgtaagcattcctagttgttaattaggtttacaacattttacttgttgtatacatatgggtcttatgtattatggaaaaaaatatatatatgtaagactttaaataaaaaatggttgtaatctgtgttcaagtgtgttatgatgaatgaatcttgtggcttttgattttaaaaaaaaaaaaaaaaaaaattccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="104019" stop="105120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104323" g_stop="104819" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="523" r_length="497" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="524" polyA_stop="544"/>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E718465" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104323" e_stop="104819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCCATCACTTCCATTACATTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCTGTGTTCAAGTGTGTTATGATGAATGAATCTTGTGGCTTTTGATTTT</genome_strand>
        <mrna_strand>TTGATCCATCACTTCCATTACATTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCTGTGTTCAAGTGTGTTATGATGAATGAATCTTGTGGCTTTTGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E721627" ref_strand="+" ref_description="SGN-E721627 [FC14CE12]">
      <seq>tgatccatcacttccaccccattacttaaaaaatttctcttataatttaaattgtataatgaaaatgactaaggtttgttcttttgtggcagtaatgttggtgatgatccttgtttgtgatcaatttggggctaacgaggcggcgacatgcagcgcctcgcagctgagcccgtgtttgggtgcgatccagggtgggaccgcaccatcacaggattgttgtgctaggcttaagaaccagcagccttgcatttgtggatttatgaaggatcctaatttgaggcaatatgttaattctccaaatgctaggaaagttgctggacaatgtggtgtaagcattcctagttgttaattaggtttacaacattttacttgttgtatacatatgggtcttatgtattatggaaaaaaatatatatatgtaagactttaaataaaaaatggttgtaatctgtgttcaagtgtgttatgatgaatgaatcttgtggcttttgattttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="104043" stop="105120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104324" g_stop="104819" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="497" polyA_stop="531"/>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E721627" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104324" e_stop="104819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCCATCACTTCCATTACATTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCTGTGTTCAAGTGTGTTATGATGAATGAATCTTGTGGCTTTTGATTTT</genome_strand>
        <mrna_strand>TGATCCATCACTTCCACCCCATTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCTGTGTTCAAGTGTGTTATGATGAATGAATCTTGTGGCTTTTGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E717363" ref_strand="+" ref_description="SGN-E717363 [FC01AA07]">
      <seq>gatcacttccattacctcacttaaaaaatttctcttataatttaaattgtataatgaaaatgactaaggtttgttcttttgtggcagtaatgttggtgatgatccttgtttgtgatcaatttggggctaacgaggcggcgacatgcagcgcctcgcagctgagcccgtgtttgggtgcgatccagggtgggaccgcaccatcacaggattgttgtgctaggcttaagaaccagcagccttgcatttgtggatttatgaaggatcctaatttgaggcaatatgttaattctccaaatgctaggaaagttgctggacaatgtggtgtaagcattcctagttgttaattaggtttacaacattttacttgttgtatacatatgggtcttatgtattatggaaaaaaatatatatatgtaagactttaaataaaaaatggttgtaatctgtgttcaagtgtgttatgatgaatgaatcttgtggcttttgatttaaaaaaaaaaaaaaaaaaaaaaaaaagtccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="104030" stop="105120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104329" g_stop="104819" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="492" polyA_stop="517"/>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E717363" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104329" e_stop="104819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCACTTCCATTACATTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCTGTGTTCAAGTGTGTTATGATGAATGAATCTTGTGGCTTTTGATTTT</genome_strand>
        <mrna_strand>GATCACTTCCATTACCTCACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCTGTGTTCAAGTGTGTTATGATGAATGAATCTTGTGGCTTTTGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E723174" ref_strand="+" ref_description="SGN-E723174 [FC19CF05]">
      <seq>atcacttccattacattacttaaaaaatttctcttataatttaaattgtataatgaaaatgactaaggtttgttcttttgtggcagtaatgttggtgatgatccttgtttgtgatcaatttggggctaacgaggcggcgacatgcagcgcctcgcagctgagcccgtgtttgggtgcgatccagggtgggaccgcaccatcacaggattgttgtgctaggcttaagaaccagcagccttgcatttgtggatttatgaaggatcctaatttgaggcaatatgttaattctccaaatgctaggaaagttgctggacaatgtggtgtaagcattcctagttgttaattaggtttacaacattttacttgttgtatacatatgggtcttatgtattatggaaaaaaatatatatatgtaagactttaaataaaaaatggttgtaatctgtgttcaagtgtgttatgatgaatgaatcttgtggcttttgattttatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="104030" stop="105123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104330" g_stop="104823" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="495" polyA_stop="541"/>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E723174" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104330" e_stop="104823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACTTCCATTACATTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCTGTGTTCAAGTGTGTTATGATGAATGAATCTTGTGGCTTTTGATTTTATTT</genome_strand>
        <mrna_strand>ATCACTTCCATTACATTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCTGTGTTCAAGTGTGTTATGATGAATGAATCTTGTGGCTTTTGATTTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E723701" ref_strand="+" ref_description="SGN-E723701 [FC21BF08]">
      <seq>tcacttccattacattacttaaaaaatttctcttataatttaaattgtataatgaaaatgactaaggtttgttcttttgtggcagtaatgttggtgatgatccttgtttgtgatcaatttggggctaacgaggcggcgacatgcagcgcctcgcagctgagcccgtgtttgggtgcgatccagggtgggaccgcaccatcacaggattgttgtgctaggcttaaaaaccagcagccttgcatttgtggatttatgaaggatcctaatttgaggcaatatgttaattctccaaatgctaggaaagttgctggacaatgtggtgtaagcattcctagttgttaattaggtttacaacattttacttgttgtatacatatgggtcttatgtattatggaaaaaaatatatatatgtaagactttaaataaaaaatggttgtaatctgtgttcaagtgtgttatgatgaatgaatcttgtggcttttgattttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="104031" stop="105120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104331" g_stop="104823" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E723701" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104331" e_stop="104823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTTCCATTACATTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCTGTGTTCAAGTGTGTTATGATGAATGAATCTTGTGGCTTTTGATTTTATTT</genome_strand>
        <mrna_strand>TCACTTCCATTACATTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAAAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCTGTGTTCAAGTGTGTTATGATGAATGAATCTTGTGGCTTTTGATTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E723455" ref_strand="+" ref_description="SGN-E723455 [FC20CB07]">
      <seq>tccattacattacttaaaaaatttctcttataatttaaattgtataatgaaaatgactaaggtttgttcttttgtggcagtaatgttggtgatgatccttgtttgtgatcaatttggggctaacgaggcggcgacatgcagcgcctcgcagctgagcccgtgtttgggtgcgatccagggtgggaccgcaccatcacaggattgttgtgctaggcttaagaaccagcagccttgcatttgtggatttatgaaggatcctaatttgaggcaatatgttaattctccaaatgctaggaaagttgctggacaatgtggtgtaagcattcctagttgttaattaggtttacaacattttacttgttgtatacatatgggtcttatgtattatggaaaaaaatatatatatgtaagactttaaataaaaaatggttgtaatctgtgttcaagtgtgttatgatgaatgaatcttgtggcttttgattttaaaaaaaaaaaaaaaaaaacaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="104036" stop="105120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104336" g_stop="104819" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="520"/>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E723455" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104336" e_stop="104819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTACATTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCTGTGTTCAAGTGTGTTATGATGAATGAATCTTGTGGCTTTTGATTTT</genome_strand>
        <mrna_strand>TCCATTACATTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCTGTGTTCAAGTGTGTTATGATGAATGAATCTTGTGGCTTTTGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716483" ref_strand="+" ref_description="SGN-E716483 [FB17AG01]">
      <seq>cattacttaaaaaatttctcttataatttaaattgtataatgaaaatgactaaggtttgttcttttgtggcagtaatgttggtgatgatccttgtttgtgatcaatttggggctaacgaggcggcgacatgcagcgcctcgcagctgagcccgtgtttgggtgcgatccagggtgggaccgcaccatcacaggattgttgtgctaggcttaagaaccagcagccttgcatttgtggatttatgaaggatcctaatttgaggcaatatgttaattctccaaatgctaggaaagttgctggacaatgtggtgtaagcattcctagttgttaattaggtttacaacattttacttgttgtatacatatgggtcttatgtattatggaaaaaaatatatatatgtaagactttaaataaaaaatggttgtaatctgtgttcaagtgtgttatgatgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="104043" stop="105100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104343" g_stop="104795" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="454" polyA_stop="467"/>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E716483" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104343" e_stop="104795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCTGTGTTCAAGTGTGTTATGATGA</genome_strand>
        <mrna_strand>CATTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCTGTGTTCAAGTGTGTTATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716185" ref_strand="+" ref_description="SGN-E716185 [FB16BD09]">
      <seq>attacttaaaaaatttctcttataatttaaattgtataatgaaaatgactaaggtttgttcttttgtggcagtaatgttggtgatgatccttgtttgtgatcaatttggggctaacgaggcggcgacatgcagcgcctcgcagctgagcccgtgtttgggtgcgatccagggtgggaccgcaccatcacaggattgttgtgctaggcttaagaaccagcagccttgcatttgtggatttatgaaggatcctaatttgaggcaatatgttaattctccaaatgctaggaaagttgctggacaatgtggtgtaagcattcctagttgttaattaggtttacaacattttacttgttgtatacatatgggtcttatgtattatggaaaaaaatatatatatgtaagactttaaataaaaaatggttgtaatctgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="104044" stop="105074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104344" g_stop="104773" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="432" polyA_stop="443"/>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E716185" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104344" e_stop="104773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCT</genome_strand>
        <mrna_strand>ATTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E714551" ref_strand="+" ref_description="SGN-E714551 [FB11DA12]">
      <seq>ttacttaaaaaatttctcttataatttaaattgtataatgaaaatgactaaggtttgttcttttgtggcagtaatgttggtgatgatccttgtttgtgatcaatttggggctaacgaggcggcgacatgcagcgcctcgcagctgagcccgtgtttgggtgcgatccagggtgggaccgcaccatcacaggattgttgtgctaggcttaagaaccagcagccttgcatttgtggatttatgaaggatcctaatttgaggcaatatgttaattctccaaatgctaggaaagttgctggacaatgtggtgtaagcattcctagttgttaattaggtttacaacattttacttgttgtatacatatgggtcttatgtattatggaaaaaaatatatatatgtaagactttaaataaaaaatggttgtaatctgtgttcaagtgtgttatgatgaatgaatcttgtggcttttgattttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="104045" stop="105120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104345" g_stop="104819" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="476" polyA_stop="485"/>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E714551" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104345" e_stop="104819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCTGTGTTCAAGTGTGTTATGATGAATGAATCTTGTGGCTTTTGATTTT</genome_strand>
        <mrna_strand>TTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCTGTGTTCAAGTGTGTTATGATGAATGAATCTTGTGGCTTTTGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337220" ref_strand="+" ref_description="SGN-E337220 [cTOE-7-M7]">
      <seq>aatttctcttataatttaaattgtataatgaaaatgactaaggtttgttcttttgtggcagtaatgttggtgatgatccttgtttgtgatcaatttggggctaacgaggcggcgacatgcagcgcctcgcagctgagcccgtgtttgggtgcgatccatggtgggaccgcaccatcacaggattgttgtgctaggcttaagaaccagcagccttgcatttgtggatttatgaaggatcctaatttgaggcaatatgttaattctccaaatgctaggaaagttgctggacaatgtggtgtaagcattcctagttgttaattaggtttacaacattttacttgttgtatacatatgggtcttatgtattatggaaaaaaatatatatatgtaagactttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="104055" stop="105054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104355" g_stop="104754" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E337220" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104355" e_stop="104754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAA</genome_strand>
        <mrna_strand>AATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCATGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E396922" ref_strand="+" ref_description="SGN-E396922 [TUS-44-D1]">
      <seq>tgcgatccagggtgggaccgcaccatcacaggattgttgtgctaggcttaagaaccagcagccttgcatttgtggatttatgaaggatcctaatttgaggcaatatgttaattctccaaatgctaggaaagttgctggacaatgtggtgtaagcattcctagttgttaattaggtttacaacattttacttgttgtatacatatgggtcttatgtattatggaaaaaaatatatatatgtaagactttaaataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="104204" stop="105061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104504" g_stop="104767" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E396922" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>264</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104504" e_stop="104767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTG</genome_strand>
        <mrna_strand>TGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204396" ref_strand="+" ref_description="SGN-E204396 [cLEC-13-L1]">
      <seq>tcaactttgtgtgtctcattcttcgcctcttaaatagcactctctatctaaattttgattctcatctcttttagtatttgcattttagctactactcataagtagttgccaaaagaaaaaattaaagcaaaatttatcgtgctgccatggctgtcgaggaactctcggttgttctcccccgcgtgctcattgtctctagacgtaccgttcgtaagaacaaatttgatgattttgttggagaatatcatctcgatcttatagtaagctatggagctgttccggtgattgtacccagagtttccggggtacatttgttattagacagttttgaaccaattcatggtgttcttctctgtgaaggagaggatatcgatccttctctgtacaacgatgaactatccgatctctccgtagaagaattggaagaaattaggagattgcacgctagcgacactgcaattgacaaggaaaaagacacaattgaactcagattggctaagctctgtctagaaaggaacattccctatttgggaatatgcaagggttcacaggtactgaatgttgcatgtgggggaactcttatacaagacattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="110617" stop="111892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110917" g_stop="111153" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111154" i_stop="111233" i_length="80">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111234" g_stop="111592" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="596" r_length="359" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E204396" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110917" e_stop="111153"/>
          <exon e_start="111234" e_stop="111592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTTTGTGTGTCTCATTCTTCGCCTCTTAAATAGCACTCTCTATCTAAATTTTAATTCTCATCTCTTTTAGTATTTGCATTTTAGCTACTACTCATAAGTAGTTGCCAAAAGAAAAAATTAAAGCAAAATTTATCGTGCTGCCATGGCTGTCGAGGAACTCTCGGTTGTTCTCCCCCGCGTGCTCATTGTCTCTAGACGTACCGTTCGTAAGAACAAATTTGTTGATTTTGTTGGTACGTTATTTTTTTTTTCTTTCACATGATTATCAAAAAGATTGTAAAATTCTGAATTTCAGATTTTGATTAATTTTCAGGAGAATATCATCTCGATCTTATAGTAAGCTATGGAGCTGTTCCGGTGATTGTACCCAGAGTTTCCGGGGTACATTTGTTATTAGACAGTTTTGAACCAATTCATGGTGTTCTTCTCTGTGAAGGAGAGGATATCGATCCTTCTCTGTACAACGATGAACTATCCGATCTCTCCGTAGAAGAATTGGAAGAAATTAGGAGATTGCACGCTAGCGACACTGCAATTGACAAGGAAAAAGACACAATTGAACTCAGATTGGCTAAGCTCTGTCTAGAAAGGAACATTCCCTATTTGGGAATATGCAGGGGTTCACAGGTACTGAATGTTGCATGTGGGGGAACTCTTATACAAGACATTGGA</genome_strand>
        <mrna_strand>TCAACTTTGTGTGTCTCATTCTTCGCCTCTTAAATAGCACTCTCTATCTAAATTTTGATTCTCATCTCTTTTAGTATTTGCATTTTAGCTACTACTCATAAGTAGTTGCCAAAAGAAAAAATTAAAGCAAAATTTATCGTGCTGCCATGGCTGTCGAGGAACTCTCGGTTGTTCTCCCCCGCGTGCTCATTGTCTCTAGACGTACCGTTCGTAAGAACAAATTTGATGATTTTGTTG................................................................................GAGAATATCATCTCGATCTTATAGTAAGCTATGGAGCTGTTCCGGTGATTGTACCCAGAGTTTCCGGGGTACATTTGTTATTAGACAGTTTTGAACCAATTCATGGTGTTCTTCTCTGTGAAGGAGAGGATATCGATCCTTCTCTGTACAACGATGAACTATCCGATCTCTCCGTAGAAGAATTGGAAGAAATTAGGAGATTGCACGCTAGCGACACTGCAATTGACAAGGAAAAAGACACAATTGAACTCAGATTGGCTAAGCTCTGTCTAGAAAGGAACATTCCCTATTTGGGAATATGCAAGGGTTCACAGGTACTGAATGTTGCATGTGGGGGAACTCTTATACAAGACATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E247991" ref_strand="+" ref_description="SGN-E247991 [cLEF-47-I17]">
      <seq>tcaactttgtgtgtctcattcttcgcctcttaaagagcacgctctatctaaattttaattctcatctcttttagtatttgcattttagctactactcataagtagttgccaaaagaaaaaattaaagcaaaatttatcgtgctgccatggctgtcgaggaactctcggttgttctcccccgcgtgctcattgtctctagacgtaccgttcgtaagaacaaatttgttgattttgttggagaatatcatctcgatcttatagtaagctatggagctgttccggtgattgtacccagagtttccggggtacatttgttattagacagttttgaaccaattcatggtgttcttctctgtgaaggagaggatatcgatccttctctgtacaacgatgaactatccgatctctccgtagaagaattggaagaaattaggagattgcacgctagcgacactgcaattgacaaggaaaaagacacaattgaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="110617" stop="111784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110917" g_stop="111153" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111154" i_stop="111233" i_length="80">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111234" g_stop="111484" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="488" r_length="251" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E247991" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110917" e_stop="111153"/>
          <exon e_start="111234" e_stop="111484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTTTGTGTGTCTCATTCTTCGCCTCTTAAATAGCACTCTCTATCTAAATTTTAATTCTCATCTCTTTTAGTATTTGCATTTTAGCTACTACTCATAAGTAGTTGCCAAAAGAAAAAATTAAAGCAAAATTTATCGTGCTGCCATGGCTGTCGAGGAACTCTCGGTTGTTCTCCCCCGCGTGCTCATTGTCTCTAGACGTACCGTTCGTAAGAACAAATTTGTTGATTTTGTTGGTACGTTATTTTTTTTTTCTTTCACATGATTATCAAAAAGATTGTAAAATTCTGAATTTCAGATTTTGATTAATTTTCAGGAGAATATCATCTCGATCTTATAGTAAGCTATGGAGCTGTTCCGGTGATTGTACCCAGAGTTTCCGGGGTACATTTGTTATTAGACAGTTTTGAACCAATTCATGGTGTTCTTCTCTGTGAAGGAGAGGATATCGATCCTTCTCTGTACAACGATGAACTATCCGATCTCTCCGTAGAAGAATTGGAAGAAATTAGGAGATTGCACGCTAGCGACACTGCAATTGACAAGGAAAAAGACACAATTGAACTC</genome_strand>
        <mrna_strand>TCAACTTTGTGTGTCTCATTCTTCGCCTCTTAAAGAGCACGCTCTATCTAAATTTTAATTCTCATCTCTTTTAGTATTTGCATTTTAGCTACTACTCATAAGTAGTTGCCAAAAGAAAAAATTAAAGCAAAATTTATCGTGCTGCCATGGCTGTCGAGGAACTCTCGGTTGTTCTCCCCCGCGTGCTCATTGTCTCTAGACGTACCGTTCGTAAGAACAAATTTGTTGATTTTGTTG................................................................................GAGAATATCATCTCGATCTTATAGTAAGCTATGGAGCTGTTCCGGTGATTGTACCCAGAGTTTCCGGGGTACATTTGTTATTAGACAGTTTTGAACCAATTCATGGTGTTCTTCTCTGTGAAGGAGAGGATATCGATCCTTCTCTGTACAACGATGAACTATCCGATCTCTCCGTAGAAGAATTGGAAGAAATTAGGAGATTGCACGCTAGCGACACTGCAATTGACAAGGAAAAAGACACAATTGAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211850" ref_strand="+" ref_description="SGN-E211850 [cLEC-66-H20]">
      <seq>aactttgtgtgtctcattcttcgcctcttaaatagcactctctatctaaattttaattctcatctcttttagtatttgcattttagctactactcataagtagttgccaaaagaaaaaattaaagcaaaatttatcgtgctgccatggctgtcgaggaactctcggttgttctcccccgcgtgctcattgtctctagacgtaccgttcgtaagaacaaatttgttgattttgttggagaatatcatctcgatcttatagtaagctatggagctgttccggtgattgtacccagagtttccggggtacatttgttattagacagttttgaaccaattcatggtgttcttctctgtgaaggagaggatatcgatccttctctgtacaacgatgaactatccgatctctccgtagaagaattggaagaaattaggagattgcacgctagcgacactgcaattgacaaggaaaaagacacaattgaactcagattggctaagctctgtctagaaagggacattccctatttgggaatatgcangggttcacaggtactgaatgttgcatgtgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="110619" stop="111869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110919" g_stop="111153" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111154" i_stop="111233" i_length="80">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111234" g_stop="111569" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="571" r_length="336" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E211850" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110919" e_stop="111153"/>
          <exon e_start="111234" e_stop="111569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTGTGTGTCTCATTCTTCGCCTCTTAAATAGCACTCTCTATCTAAATTTTAATTCTCATCTCTTTTAGTATTTGCATTTTAGCTACTACTCATAAGTAGTTGCCAAAAGAAAAAATTAAAGCAAAATTTATCGTGCTGCCATGGCTGTCGAGGAACTCTCGGTTGTTCTCCCCCGCGTGCTCATTGTCTCTAGACGTACCGTTCGTAAGAACAAATTTGTTGATTTTGTTGGTACGTTATTTTTTTTTTCTTTCACATGATTATCAAAAAGATTGTAAAATTCTGAATTTCAGATTTTGATTAATTTTCAGGAGAATATCATCTCGATCTTATAGTAAGCTATGGAGCTGTTCCGGTGATTGTACCCAGAGTTTCCGGGGTACATTTGTTATTAGACAGTTTTGAACCAATTCATGGTGTTCTTCTCTGTGAAGGAGAGGATATCGATCCTTCTCTGTACAACGATGAACTATCCGATCTCTCCGTAGAAGAATTGGAAGAAATTAGGAGATTGCACGCTAGCGACACTGCAATTGACAAGGAAAAAGACACAATTGAACTCAGATTGGCTAAGCTCTGTCTAGAAAGGAACATTCCCTATTTGGGAATATGCAGGGGTTCACAGGTACTGAATGTTGCATGTGGGG</genome_strand>
        <mrna_strand>AACTTTGTGTGTCTCATTCTTCGCCTCTTAAATAGCACTCTCTATCTAAATTTTAATTCTCATCTCTTTTAGTATTTGCATTTTAGCTACTACTCATAAGTAGTTGCCAAAAGAAAAAATTAAAGCAAAATTTATCGTGCTGCCATGGCTGTCGAGGAACTCTCGGTTGTTCTCCCCCGCGTGCTCATTGTCTCTAGACGTACCGTTCGTAAGAACAAATTTGTTGATTTTGTTG................................................................................GAGAATATCATCTCGATCTTATAGTAAGCTATGGAGCTGTTCCGGTGATTGTACCCAGAGTTTCCGGGGTACATTTGTTATTAGACAGTTTTGAACCAATTCATGGTGTTCTTCTCTGTGAAGGAGAGGATATCGATCCTTCTCTGTACAACGATGAACTATCCGATCTCTCCGTAGAAGAATTGGAAGAAATTAGGAGATTGCACGCTAGCGACACTGCAATTGACAAGGAAAAAGACACAATTGAACTCAGATTGGCTAAGCTCTGTCTAGAAAGGGACATTCCCTATTTGGGAATATGCANGGGTTCACAGGTACTGAATGTTGCATGTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E210626" ref_strand="+" ref_description="SGN-E210626 [cLEC-68-C16]">
      <seq>ttgtgtgtctcattcttcgcctcttaaatagcactctctatctaaattttaattctcatctcttttagtatttgcattttagctactactcataagtagttgccaaaagaaaaaattaaagcaaaatttatcgtgctgccatggctgtcgaggaactctcggttgttctcccccgcgtgctcattgtctctagacgtaccgttcgtaagaacaaatttgttgattttgttggagaatatcatctcgatcttatagtaagctatggagctgttccggtgattgtacccagagtttccggggtacatttgttattagacagttttgaaccaattcatggtgttcttctctgtgaaggagaggatatcgatccttctctgtacaacgatgaactatccgatctctccgtagaagaattggaagaaattaggagattgcacgctagcgacactgcaattgacaaggaaaaagacacaattgaactcagattggctaagctctgtctagaaaggaacattccctatttgggaatatgcaggggttcacaggtactgaatgttgcatgtgggggaactcttatacaagacattggaaaagaaatatcgaaaaaccttcctgagaatcagagggtagttcatatggattacgataactatgatggtcatagacatgttatacaagttgtcgaggaaacgccattgcaccattggttcaaggactcgttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="110623" stop="112026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110923" g_stop="111153" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111154" i_stop="111233" i_length="80">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111234" g_stop="111726" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="724" r_length="493" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E210626" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110923" e_stop="111153"/>
          <exon e_start="111234" e_stop="111726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGTGTCTCATTCTTCGCCTCTTAAATAGCACTCTCTATCTAAATTTTAATTCTCATCTCTTTTAGTATTTGCATTTTAGCTACTACTCATAAGTAGTTGCCAAAAGAAAAAATTAAAGCAAAATTTATCGTGCTGCCATGGCTGTCGAGGAACTCTCGGTTGTTCTCCCCCGCGTGCTCATTGTCTCTAGACGTACCGTTCGTAAGAACAAATTTGTTGATTTTGTTGGTACGTTATTTTTTTTTTCTTTCACATGATTATCAAAAAGATTGTAAAATTCTGAATTTCAGATTTTGATTAATTTTCAGGAGAATATCATCTCGATCTTATAGTAAGCTATGGAGCTGTTCCGGTGATTGTACCCAGAGTTTCCGGGGTACATTTGTTATTAGACAGTTTTGAACCAATTCATGGTGTTCTTCTCTGTGAAGGAGAGGATATCGATCCTTCTCTGTACAACGATGAACTATCCGATCTCTCCGTAGAAGAATTGGAAGAAATTAGGAGATTGCACGCTAGCGACACTGCAATTGACAAGGAAAAAGACACAATTGAACTCAGATTGGCTAAGCTCTGTCTAGAAAGGAACATTCCCTATTTGGGAATATGCAGGGGTTCACAGGTACTGAATGTTGCATGTGGGGGAACTCTTATACAAGACATTGGAAAAGAAATATCGAAAAACCTTCCTGAGAATCAGAGGGTAGTTCATATGGATTACGATAACTATGATGGTCATAGACATGTTATACAAGTTGTCGAGGAAACGCCATTGCACCATTGGTTCAAGGACTCGTTGGA</genome_strand>
        <mrna_strand>TTGTGTGTCTCATTCTTCGCCTCTTAAATAGCACTCTCTATCTAAATTTTAATTCTCATCTCTTTTAGTATTTGCATTTTAGCTACTACTCATAAGTAGTTGCCAAAAGAAAAAATTAAAGCAAAATTTATCGTGCTGCCATGGCTGTCGAGGAACTCTCGGTTGTTCTCCCCCGCGTGCTCATTGTCTCTAGACGTACCGTTCGTAAGAACAAATTTGTTGATTTTGTTG................................................................................GAGAATATCATCTCGATCTTATAGTAAGCTATGGAGCTGTTCCGGTGATTGTACCCAGAGTTTCCGGGGTACATTTGTTATTAGACAGTTTTGAACCAATTCATGGTGTTCTTCTCTGTGAAGGAGAGGATATCGATCCTTCTCTGTACAACGATGAACTATCCGATCTCTCCGTAGAAGAATTGGAAGAAATTAGGAGATTGCACGCTAGCGACACTGCAATTGACAAGGAAAAAGACACAATTGAACTCAGATTGGCTAAGCTCTGTCTAGAAAGGAACATTCCCTATTTGGGAATATGCAGGGGTTCACAGGTACTGAATGTTGCATGTGGGGGAACTCTTATACAAGACATTGGAAAAGAAATATCGAAAAACCTTCCTGAGAATCAGAGGGTAGTTCATATGGATTACGATAACTATGATGGTCATAGACATGTTATACAAGTTGTCGAGGAAACGCCATTGCACCATTGGTTCAAGGACTCGTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E271837" ref_strand="+" ref_description="SGN-E271837 [cLEM-8-O18]">
      <seq>tatctaaattttaattctcatctctttgagagtttgcatgttagctactagtcataactagttgccaaaagaaaaaattaaagcaaaatttatcgtgctgccatggctgtcgaggaactctcggttgttctcccccgcgtgctcattgtctctagacgtaccgttcgtaagaacaaatttgttgattttgttggagaatatcatctcgatcttatagtaagctatggagctgttccggtgattgtacccagagtttccggggtacatttgttattagacagttttgaaccaattcatggtgttcttctctgtgaaggagaggatatcgatccttctctgtacaacgatgaactatccgatctctccgtagaagaattggaagaaattaggagattgcacgctagcgacactggcattgacaaggaaaaagacacaattgaactcagattggctaagctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="110661" stop="111800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110961" g_stop="111153" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111154" i_stop="111233" i_length="80">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111234" g_stop="111500" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="460" r_length="267" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E271837" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110961" e_stop="111153"/>
          <exon e_start="111234" e_stop="111500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTAAATTTTAATTCTCATCTCTTTTAGTATTTGCATTTTAGCTACTACTCATAAGTAGTTGCCAAAAGAAAAAATTAAAGCAAAATTTATCGTGCTGCCATGGCTGTCGAGGAACTCTCGGTTGTTCTCCCCCGCGTGCTCATTGTCTCTAGACGTACCGTTCGTAAGAACAAATTTGTTGATTTTGTTGGTACGTTATTTTTTTTTTCTTTCACATGATTATCAAAAAGATTGTAAAATTCTGAATTTCAGATTTTGATTAATTTTCAGGAGAATATCATCTCGATCTTATAGTAAGCTATGGAGCTGTTCCGGTGATTGTACCCAGAGTTTCCGGGGTACATTTGTTATTAGACAGTTTTGAACCAATTCATGGTGTTCTTCTCTGTGAAGGAGAGGATATCGATCCTTCTCTGTACAACGATGAACTATCCGATCTCTCCGTAGAAGAATTGGAAGAAATTAGGAGATTGCACGCTAGCGACACTGCAATTGACAAGGAAAAAGACACAATTGAACTCAGATTGGCTAAGCTCT</genome_strand>
        <mrna_strand>TATCTAAATTTTAATTCTCATCTCTTTGAGAGTTTGCATGTTAGCTACTAGTCATAACTAGTTGCCAAAAGAAAAAATTAAAGCAAAATTTATCGTGCTGCCATGGCTGTCGAGGAACTCTCGGTTGTTCTCCCCCGCGTGCTCATTGTCTCTAGACGTACCGTTCGTAAGAACAAATTTGTTGATTTTGTTG................................................................................GAGAATATCATCTCGATCTTATAGTAAGCTATGGAGCTGTTCCGGTGATTGTACCCAGAGTTTCCGGGGTACATTTGTTATTAGACAGTTTTGAACCAATTCATGGTGTTCTTCTCTGTGAAGGAGAGGATATCGATCCTTCTCTGTACAACGATGAACTATCCGATCTCTCCGTAGAAGAATTGGAAGAAATTAGGAGATTGCACGCTAGCGACACTGGCATTGACAAGGAAAAAGACACAATTGAACTCAGATTGGCTAAGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E207107" ref_strand="+" ref_description="SGN-E207107 [cLEC-30-A3]">
      <seq>ctgccatggctgtcgaggaactctcggttgttctcccccgcgtgctcattgtctctagacgtaccgttcgtaagaacaaatttgttgattttgttggagaatatcatctcgatcttatagtaagctatggagctgttccggtgattggacccagagtttccggggtacattgggtattagacagttgggaaccaattcatggtgttcttctctgtgaaggagaggatatcgatccttctctgtacaacgatgaactatccgatctctccgtagaagaattggaagaaattacgagattgcacgctagcgacactgcaattgacaaggaaaaagacacaattgaactcagattggctaagctctgtctagaaaggaacattccctatttgggaatatgcaggggttcacaggtactgaatgttgcatgtgggggaactcttatacaagacattggaaaagaaatatcgaaaaaccttcctgagaatcagagggtagttcatatggattacgataactatgatggtcatagaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="110758" stop="111969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111058" g_stop="111153" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111154" i_stop="111233" i_length="80">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111234" g_stop="111669" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="532" r_length="436" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E207107" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111058" e_stop="111153"/>
          <exon e_start="111234" e_stop="111669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCCATGGCTGTCGAGGAACTCTCGGTTGTTCTCCCCCGCGTGCTCATTGTCTCTAGACGTACCGTTCGTAAGAACAAATTTGTTGATTTTGTTGGTACGTTATTTTTTTTTTCTTTCACATGATTATCAAAAAGATTGTAAAATTCTGAATTTCAGATTTTGATTAATTTTCAGGAGAATATCATCTCGATCTTATAGTAAGCTATGGAGCTGTTCCGGTGATTGTACCCAGAGTTTCCGGGGTACATTTGTTATTAGACAGTTTTGAACCAATTCATGGTGTTCTTCTCTGTGAAGGAGAGGATATCGATCCTTCTCTGTACAACGATGAACTATCCGATCTCTCCGTAGAAGAATTGGAAGAAATTAGGAGATTGCACGCTAGCGACACTGCAATTGACAAGGAAAAAGACACAATTGAACTCAGATTGGCTAAGCTCTGTCTAGAAAGGAACATTCCCTATTTGGGAATATGCAGGGGTTCACAGGTACTGAATGTTGCATGTGGGGGAACTCTTATACAAGACATTGGAAAAGAAATATCGAAAAACCTTCCTGAGAATCAGAGGGTAGTTCATATGGATTACGATAACTATGATGGTCATAGACA</genome_strand>
        <mrna_strand>CTGCCATGGCTGTCGAGGAACTCTCGGTTGTTCTCCCCCGCGTGCTCATTGTCTCTAGACGTACCGTTCGTAAGAACAAATTTGTTGATTTTGTTG................................................................................GAGAATATCATCTCGATCTTATAGTAAGCTATGGAGCTGTTCCGGTGATTGGACCCAGAGTTTCCGGGGTACATTGGGTATTAGACAGTTGGGAACCAATTCATGGTGTTCTTCTCTGTGAAGGAGAGGATATCGATCCTTCTCTGTACAACGATGAACTATCCGATCTCTCCGTAGAAGAATTGGAAGAAATTACGAGATTGCACGCTAGCGACACTGCAATTGACAAGGAAAAAGACACAATTGAACTCAGATTGGCTAAGCTCTGTCTAGAAAGGAACATTCCCTATTTGGGAATATGCAGGGGTTCACAGGTACTGAATGTTGCATGTGGGGGAACTCTTATACAAGACATTGGAAAAGAAATATCGAAAAACCTTCCTGAGAATCAGAGGGTAGTTCATATGGATTACGATAACTATGATGGTCATAGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E257602" ref_strand="+" ref_description="SGN-E257602 [cLEG-45-L11]">
      <seq>ccggtgattgtacccagagtttccggggtacatttgttattagacagttttgaaccaattcatggtgttcttctctgtgaaggagaggatatcgatccttctctggacaacgatgaactatccgatctctccgtacaagaattggaagaaattaggagattgcacgctagcgacactgcaattgactaggaaaaagacactattgaactcagattgggtaagctctgtctagaaaggaacattccctatttgggaatatgcaggggttcacaagtactgaatgttgcatgtgggggaactcttatacgagacattggaaaagaaatatcgaaaaaccttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="110975" stop="111916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111275" g_stop="111616" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E257602" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111275" e_stop="111616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGTGATTGTACCCAGAGTTTCCGGGGTACATTTGTTATTAGACAGTTTTGAACCAATTCATGGTGTTCTTCTCTGTGAAGGAGAGGATATCGATCCTTCTCTGTACAACGATGAACTATCCGATCTCTCCGTAGAAGAATTGGAAGAAATTAGGAGATTGCACGCTAGCGACACTGCAATTGACAAGGAAAAAGACACAATTGAACTCAGATTGGCTAAGCTCTGTCTAGAAAGGAACATTCCCTATTTGGGAATATGCAGGGGTTCACAGGTACTGAATGTTGCATGTGGGGGAACTCTTATACAAGACATTGGAAAAGAAATATCGAAAAACCTTCCT</genome_strand>
        <mrna_strand>CCGGTGATTGTACCCAGAGTTTCCGGGGTACATTTGTTATTAGACAGTTTTGAACCAATTCATGGTGTTCTTCTCTGTGAAGGAGAGGATATCGATCCTTCTCTGGACAACGATGAACTATCCGATCTCTCCGTACAAGAATTGGAAGAAATTAGGAGATTGCACGCTAGCGACACTGCAATTGACTAGGAAAAAGACACTATTGAACTCAGATTGGGTAAGCTCTGTCTAGAAAGGAACATTCCCTATTTGGGAATATGCAGGGGTTCACAAGTACTGAATGTTGCATGTGGGGGAACTCTTATACGAGACATTGGAAAAGAAATATCGAAAAACCTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205913" ref_strand="+" ref_description="SGN-E205913 [cLEC-20-L22]">
      <seq>aaaaagacacaattgaactcagattggctaagctctgtgtagaaaggaacattccctatttgggaatatgcaggggttcacaggtactgaatgttgcatgtgggggaactcttatacaagacattggaaaagaaatatcgaaaaaccttcctgagaatcagagggtagttcatatggattacgataactatgatggtcatagacatgttatacaagttgtcgaggaaacgccattgcaccattggttcaaggactcgttggaagacgaaaaaatggagatttcagtcaatagttatcatcatcaaggagttaaaaaattggctcagagatttgttcctatggcatttgcccctgatggtttaattgaaggattctatgatccagatgcttataatcctgttgagggtaagtttattatgggacttcaatttcatccggaacgaatgagacaagaagatagtgatgaatttgattatcctggatgtacatttgcttatcaggagtttgtgaaggctgtagttgcatatcanaaaaaactgttaagcacaaccacaatcgaaaagccattgaagcttaatcaagaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="111165" stop="112540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111465" g_stop="111964" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111965" i_stop="112154" i_length="190">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112155" g_stop="112240" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="586" r_length="86" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E205913" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111465" e_stop="111964"/>
          <exon e_start="112155" e_stop="112240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGACACAATTGAACTCAGATTGGCTAAGCTCTGTCTAGAAAGGAACATTCCCTATTTGGGAATATGCAGGGGTTCACAGGTACTGAATGTTGCATGTGGGGGAACTCTTATACAAGACATTGGAAAAGAAATATCGAAAAACCTTCCTGAGAATCAGAGGGTAGTTCATATGGATTACGATAACTATGATGGTCATAGACATGTTATACAAGTTGTCGAGGAAACGCCATTGCACCATTGGTTCAAGGACTCGTTGGAAGACGAAAAAATGGAGATTTCAGTCAATAGTTATCATCATCAAGGAGTTAAAAAATTGGCTCAGAGATTTGTTCCTATGGCATTTGCCCCTGATGGTTTAATTGAAGGATTCTATGATCCAGATGCTTATAATCCTGTTGAGGGTAAGTTTATTATGGGACTTCAATTTCATCCGGAACGAATGAGACAAGAAGATAGTGATGAATTTGATTATCCTGGATGTACATTTGCTTATCAGGTACCTCTATAAACTTCAATTCCTACTGAATTTTTGATCTTTTACTACGATAAATTTTCATATATTGGACTATCAGTATTACCCAGATATTCCTGGGAAAAATAATGTAACAGAGGATAATTTTGAATAGTTCATTTGACCGTTTTCGTATTAACTTTGTTCTAACAGTTGAATGTACTAATTTTGGCAGGAGTTTGTGAAGGCTGTAGTTGCATATCAGAAAAAACTGTTAAGCACAACCACAATCGAAAAGCCATTGAAGCTTAATCAAGAAAT</genome_strand>
        <mrna_strand>AAAAAGACACAATTGAACTCAGATTGGCTAAGCTCTGTGTAGAAAGGAACATTCCCTATTTGGGAATATGCAGGGGTTCACAGGTACTGAATGTTGCATGTGGGGGAACTCTTATACAAGACATTGGAAAAGAAATATCGAAAAACCTTCCTGAGAATCAGAGGGTAGTTCATATGGATTACGATAACTATGATGGTCATAGACATGTTATACAAGTTGTCGAGGAAACGCCATTGCACCATTGGTTCAAGGACTCGTTGGAAGACGAAAAAATGGAGATTTCAGTCAATAGTTATCATCATCAAGGAGTTAAAAAATTGGCTCAGAGATTTGTTCCTATGGCATTTGCCCCTGATGGTTTAATTGAAGGATTCTATGATCCAGATGCTTATAATCCTGTTGAGGGTAAGTTTATTATGGGACTTCAATTTCATCCGGAACGAATGAGACAAGAAGATAGTGATGAATTTGATTATCCTGGATGTACATTTGCTTATCAG..............................................................................................................................................................................................GAGTTTGTGAAGGCTGTAGTTGCATATCANAAAAAACTGTTAAGCACAACCACAATCGAAAAGCCATTGAAGCTTAATCAAGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E545944" ref_strand="+" ref_description="SGN-E545944 [TUS-69-A21]">
      <seq>atcatcttcttcatgctttatttccacctacttttctgctcaccttagacttgtttaataatccattgcctccttcgtttagccactttcatttcccaattttttccaaatgaattctcaaagcttttacttcttctctctgttcactctgttttcatcacttctactaattcatgtacctcgaggttctagtgacccagatgaattttaccagacttgtgggaaaacatatacatgtggcaatattaagggattaagttatccttttatgagtgtcaatgatcctttcttctgtggctatcctggttttgagctcaattgcaatcaggatggtagtactacaatggaaatcgaaaacatcaagtatcgagttttaaacgtacttccaacaacccaaacgataagaattctgagggaggatatcatgaaatcaacttgtcctgttgatttggttaacaccactctggattactccctcttcgattatgcctctggctatacaaacttgacctttatatacgattgccctgttgcatccgactttgcagaaatggatggtactttcacttgtagaaatagcaaatatcacaatgttttcgtactacctggtgctgtaggcccggggaagtgcgatgctagtgtcacagttccagtgcctcaaatgagtgctggtaatgtagggtcattgaatacatcaggtctggcacaagtactacaagaggggtttgatataagatggaaacttgaagtaaaacctgcagtaaatgtatccaagacaaggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="118298" stop="119680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118598" g_stop="119380" g_length="783"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="783" r_length="783" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E545944" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118598" e_stop="119380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCTTCTTCATGCTTTATTTCCACCTACTTTTCTGCTCACCTTACACTTGTTTAACAATCCATTGCCT-CTTCGTTTAGCCACATTCATTTCCCAATTTTTTCCAAATGAATTCTCAAAGCTTTTACTTCTTCTCTCTGTTCACTCTGTTTTCATCACTTGTACTAATTCATGTACCTCGAGGTTCGAGTGACCCTGATGAATTTTACCAGACTTGTGGGAAAACATATACATGTGGCAATATTAAGGGATTAAGTTATCCTTTTATGAGTGTCAATGATCCTTTCTTCTGCGGCTATCCTGGTTTTGAGCTCAATTGCAATAAGGATGGTAGTACTACAATGGAAATCGAAAACATCAAGTATCGAGTTTTAAACGTACTTCCAACAACCCAAACGATAAGAATTCTGAGGGAGGATATCATGAAATCCACTTGTCCTGTTGATTTGGTTAACACCACTCTGGATTACTCCCTCTTCGATTATGCCTCTGGCTATACAAACTTGACCTTTCTATACGATTGCCCTGTTGCATCCCACTTTGCAGAAATGGATGGTACTTTCACTTGTAGAAATAGCAAATATCACAATGTTTTCGTACTACCTGGTGCTGTAGGCCCGGGGAAGTGCGATGCTAGTGTCACAGTTCCAGTGCCTCAAATGAGTGCTGGTAATGTAGGGTCATTGGATACATCAGGTCTGGCACAAGTACTACAAGAGGGGTTTGATATAAGATGGAAACTTGAAAGTAAAACCTGCAGTAAATGTATCCAAGACAAGGGA</genome_strand>
        <mrna_strand>ATCATCTTCTTCATGCTTTATTTCCACCTACTTTTCTGCTCACCTTAGACTTGTTTAATAATCCATTGCCTCCTTCGTTTAGCCACTTTCATTTCCCAATTTTTTCCAAATGAATTCTCAAAGCTTTTACTTCTTCTCTCTGTTCACTCTGTTTTCATCACTTCTACTAATTCATGTACCTCGAGGTTCTAGTGACCCAGATGAATTTTACCAGACTTGTGGGAAAACATATACATGTGGCAATATTAAGGGATTAAGTTATCCTTTTATGAGTGTCAATGATCCTTTCTTCTGTGGCTATCCTGGTTTTGAGCTCAATTGCAATCAGGATGGTAGTACTACAATGGAAATCGAAAACATCAAGTATCGAGTTTTAAACGTACTTCCAACAACCCAAACGATAAGAATTCTGAGGGAGGATATCATGAAATCAACTTGTCCTGTTGATTTGGTTAACACCACTCTGGATTACTCCCTCTTCGATTATGCCTCTGGCTATACAAACTTGACCTTTATATACGATTGCCCTGTTGCATCCGACTTTGCAGAAATGGATGGTACTTTCACTTGTAGAAATAGCAAATATCACAATGTTTTCGTACTACCTGGTGCTGTAGGCCCGGGGAAGTGCGATGCTAGTGTCACAGTTCCAGTGCCTCAAATGAGTGCTGGTAATGTAGGGTCATTGAATACATCAGGTCTGGCACAAGTACTACAAGAGGGGTTTGATATAAGATGGAAACTTG-AAGTAAAACCTGCAGTAAATGTATCCAAGACAAGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E545985" ref_strand="+" ref_description="SGN-E545985 [TUS-69-B21]">
      <seq>atcatcttcttcatgctttatttccacctacttttctgctcaccttagacttgtttaataatccattgcctccttcgtttagccgctttcatttcccaattttttccaaatgaattctcaaagcttttacttcttctctctgttcactctgttttcatcacttctactaattcatgtacctcgaggttctagtgacccagatgaattttaccagacttgtgggaaaacatatacatgtggcaatatttatggattaagtgatccttttatgagtgtcaatgatcctttcttctgtggctatcctggttttgagctcaattgcaatcaggatggcagtactacaatggaaatcgaaaacatcaagtatcgagttttaaacgtacttccaacaacccgaacgataagaattctgagggaggatatcatgaaatcaacttgtcctgttgatttggttaacaccactctggattactccctcttcgatgatgcctctggctatacaaacttgacctttatatacgattgccctgttgcatccgactttgcagaaatggatggcactttcacttgtagaaatagcaaatatcacaatgttttcgtgactacctggtgctgtacgcccggggaagtgcgatgctagagccacagatccagtgcctcaaatgagtgctggtaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="118298" stop="119573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118598" g_stop="119273" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="678" r_length="678" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E545985" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118598" e_stop="119273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCTTCTTCATGCTTTATTTCCACCTACTTTTCTGCTCACCTTACACTTGTTTAACAATCCATTGCCT-CTTCGTTTAGCCACATTCATTTCCCAATTTTTTCCAAATGAATTCTCAAAGCTTTTACTTCTTCTCTCTGTTCACTCTGTTTTCATCACTTGTACTAATTCATGTACCTCGAGGTTCGAGTGACCCTGATGAATTTTACCAGACTTGTGGGAAAACATATACATGTGGCAATATTAAGGGATTAAGTTATCCTTTTATGAGTGTCAATGATCCTTTCTTCTGCGGCTATCCTGGTTTTGAGCTCAATTGCAATAAGGATGGTAGTACTACAATGGAAATCGAAAACATCAAGTATCGAGTTTTAAACGTACTTCCAACAACCCAAACGATAAGAATTCTGAGGGAGGATATCATGAAATCCACTTGTCCTGTTGATTTGGTTAACACCACTCTGGATTACTCCCTCTTCGATTATGCCTCTGGCTATACAAACTTGACCTTTCTATACGATTGCCCTGTTGCATCCCACTTTGCAGAAATGGATGGTACTTTCACTTGTAGAAATAGCAAATATCACAATGTTTTCGT-ACTACCTGGTGCTGTAGGCCCGGGGAAGTGCGATGCTAGTGTCACAGTTCCAGTGCCTCAAATGAGTGCTGGTAATG</genome_strand>
        <mrna_strand>ATCATCTTCTTCATGCTTTATTTCCACCTACTTTTCTGCTCACCTTAGACTTGTTTAATAATCCATTGCCTCCTTCGTTTAGCCGCTTTCATTTCCCAATTTTTTCCAAATGAATTCTCAAAGCTTTTACTTCTTCTCTCTGTTCACTCTGTTTTCATCACTTCTACTAATTCATGTACCTCGAGGTTCTAGTGACCCAGATGAATTTTACCAGACTTGTGGGAAAACATATACATGTGGCAATATTTATGGATTAAGTGATCCTTTTATGAGTGTCAATGATCCTTTCTTCTGTGGCTATCCTGGTTTTGAGCTCAATTGCAATCAGGATGGCAGTACTACAATGGAAATCGAAAACATCAAGTATCGAGTTTTAAACGTACTTCCAACAACCCGAACGATAAGAATTCTGAGGGAGGATATCATGAAATCAACTTGTCCTGTTGATTTGGTTAACACCACTCTGGATTACTCCCTCTTCGATGATGCCTCTGGCTATACAAACTTGACCTTTATATACGATTGCCCTGTTGCATCCGACTTTGCAGAAATGGATGGCACTTTCACTTGTAGAAATAGCAAATATCACAATGTTTTCGTGACTACCTGGTGCTGTACGCCCGGGGAAGTGCGATGCTAGAGCCACAGATCCAGTGCCTCAAATGAGTGCTGGTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E359198" ref_strand="+" ref_description="SGN-E359198 [cLHT-11-J1]">
      <seq>tcatcttcttcatgctttatttccacctacttttctgctcaccttagacttgtttaataatccattgcctccttcgtttagccactttcatttcccaattttttccaaatgaattctcaaagcttttacttcttctctctgttcactctgttttcatcacttctactaattcatgtacctcgaggttctagtgacccagatgaattttaccagacttgtgggaaaacatatacatgtggcaatattaagggattaagttatccttttatgagtgtcaatgatcctttcttctgtggctatcctggttttgagctcaattgcaatcaggatggtagtactacaatggaaatcgaaaacatcaagtatcgagttttaaacgtacttccaacaacccaaacgataagaattctgagggaggatatcatgaaatcaacttgtcctgttgatttggttaacaccactctggattactccctcttcgattatgcctctggctatacaaacttgacctttatatacgattgccctgttgcatccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="118299" stop="119436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118599" g_stop="119136" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E359198" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118599" e_stop="119136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTTCTTCATGCTTTATTTCCACCTACTTTTCTGCTCACCTTACACTTGTTTAACAATCCATTGCCT-CTTCGTTTAGCCACATTCATTTCCCAATTTTTTCCAAATGAATTCTCAAAGCTTTTACTTCTTCTCTCTGTTCACTCTGTTTTCATCACTTGTACTAATTCATGTACCTCGAGGTTCGAGTGACCCTGATGAATTTTACCAGACTTGTGGGAAAACATATACATGTGGCAATATTAAGGGATTAAGTTATCCTTTTATGAGTGTCAATGATCCTTTCTTCTGCGGCTATCCTGGTTTTGAGCTCAATTGCAATAAGGATGGTAGTACTACAATGGAAATCGAAAACATCAAGTATCGAGTTTTAAACGTACTTCCAACAACCCAAACGATAAGAATTCTGAGGGAGGATATCATGAAATCCACTTGTCCTGTTGATTTGGTTAACACCACTCTGGATTACTCCCTCTTCGATTATGCCTCTGGCTATACAAACTTGACCTTTCTATACGATTGCCCTGTTGCATCCCA</genome_strand>
        <mrna_strand>TCATCTTCTTCATGCTTTATTTCCACCTACTTTTCTGCTCACCTTAGACTTGTTTAATAATCCATTGCCTCCTTCGTTTAGCCACTTTCATTTCCCAATTTTTTCCAAATGAATTCTCAAAGCTTTTACTTCTTCTCTCTGTTCACTCTGTTTTCATCACTTCTACTAATTCATGTACCTCGAGGTTCTAGTGACCCAGATGAATTTTACCAGACTTGTGGGAAAACATATACATGTGGCAATATTAAGGGATTAAGTTATCCTTTTATGAGTGTCAATGATCCTTTCTTCTGTGGCTATCCTGGTTTTGAGCTCAATTGCAATCAGGATGGTAGTACTACAATGGAAATCGAAAACATCAAGTATCGAGTTTTAAACGTACTTCCAACAACCCAAACGATAAGAATTCTGAGGGAGGATATCATGAAATCAACTTGTCCTGTTGATTTGGTTAACACCACTCTGGATTACTCCCTCTTCGATTATGCCTCTGGCTATACAAACTTGACCTTTATATACGATTGCCCTGTTGCATCCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395714" ref_strand="+" ref_description="SGN-E395714 [TUS-17-O10]">
      <seq>cctttctctgtcccttaaatcctcatctcctttcagcttagctcctgaataaaggtcttttaccacgattaccagttagcgcctctctttcttaggtggtgctaattcccttaatcaaacagaaatgcatccttattttttgctcttcacttccacaatatttatcttgatctatataccggggtctttctgtcaagatgacgaacaatacaggagttgtggtgagccgtttcgctgcggcagcatggatatagtttaccctttttggggagggagaaaaccagagtattgtggtcatccaagttttgagatcaagtgcgaaaataacatccccaaaattactattgaatcaacaggatacgaagtgataggtatcaacacccctaatagaattgtaaccctggctcgcgatgatttactgagtaatatttgtttggataatcctgagaatgcctcctttgatttaaacactttcagctatctttcgagtgacctgaatattactctttatttcggctgcaccctccgccctggttcgcaattaccagcttcgtctccaaatagattcaattgcaatagcaatatatttggtatatatacgctgatcaacgttcccttcgaccttagtctggtaacatgccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="121432" stop="122674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121732" g_stop="122374" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E395714" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121732" e_stop="122374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTCTCTGTCCCTTAAATCCTCATCTCCTTTCAGCTTAGCTCCTGAATAAAGGTCTTTTACCACGATTACCAGTTAGCGCCTCTCTTTCTTAGGTGGTGCTAATTCCCTTAATCAAACAGAAATGCATCCTTATTTTTTGCTCTTCACTTCCACAATATTTATCTTGATCTATATACCGGGGTCTTTCTGTCAAGATGACGAACAATACAGGAGTTGTGGTGAGCCGTTTCGCTGCGGCAGCATGGATATAGTTTACCCTTTTTGGGGAGGGAGAAAACCAGAGTATTGTGGTCATCCAAGTTTTGAGATCAAGTGCGAAAATAACATCCCCAAAATTACTATTGAATCAACAGGATACGAAGTGATAGGTATCAACACCCCTAATAGAATTGTAACCCTGGCTCGCGATGATTTACTGAGTAATATTTGTTTGGATAATCCTGAGAATGCCTCCTTTGATTTAAACACTTTCAGCTATCTTTCGAGTGACCTGAATATTACTCTTTATTTCGGCTGCACCCTCCGCCCTGGTTCGCAATTACCAGCTTCGTCTCCAAATAGATTCAATTGCAATAGCAATATATTTGGTATATATACGCTGATCAACGTTCCCTTCGACCTTAGTCTGGTAACATGCCAG</genome_strand>
        <mrna_strand>CCTTTCTCTGTCCCTTAAATCCTCATCTCCTTTCAGCTTAGCTCCTGAATAAAGGTCTTTTACCACGATTACCAGTTAGCGCCTCTCTTTCTTAGGTGGTGCTAATTCCCTTAATCAAACAGAAATGCATCCTTATTTTTTGCTCTTCACTTCCACAATATTTATCTTGATCTATATACCGGGGTCTTTCTGTCAAGATGACGAACAATACAGGAGTTGTGGTGAGCCGTTTCGCTGCGGCAGCATGGATATAGTTTACCCTTTTTGGGGAGGGAGAAAACCAGAGTATTGTGGTCATCCAAGTTTTGAGATCAAGTGCGAAAATAACATCCCCAAAATTACTATTGAATCAACAGGATACGAAGTGATAGGTATCAACACCCCTAATAGAATTGTAACCCTGGCTCGCGATGATTTACTGAGTAATATTTGTTTGGATAATCCTGAGAATGCCTCCTTTGATTTAAACACTTTCAGCTATCTTTCGAGTGACCTGAATATTACTCTTTATTTCGGCTGCACCCTCCGCCCTGGTTCGCAATTACCAGCTTCGTCTCCAAATAGATTCAATTGCAATAGCAATATATTTGGTATATATACGCTGATCAACGTTCCCTTCGACCTTAGTCTGGTAACATGCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E380031" ref_strand="+" ref_description="SGN-E380031 [TUS-3-O4]">
      <seq>ctttctctgtcccttaaatcctcatctcctttcagcttagctcctgaataaaggtcttttaccacgattaccagttagcgcctctctttcttaggtggtgctaattcccttaatcaaacagaaatgcatccttattttttgctcttcacttccacaatatttatcttgatctatataccggggtctttctgtcaagatgacgaacaatacaggagttgtggtgagccgtttcgctgcggcagcatggatatagtttaccctttttggggagggagaaaaccagagtattgtggtcatccaagttttgagatcaagtgcgaaaataacatccccaaaattactattgaatcaacaggatacgaagtgataggtatcaacacccctaatagaattgtaaccctggctcgcgatgatttactgagtaatatttgtttggataatcctgagaatgcctcctttgatttaaacactttcagctatctttcgagtgacctgaatattactctttatttcggctgcaccctccgccctggttcgcaattaccagcttcgtctccaaatagattcaattgcaatagcaatatatttggtatatatacgctgatcaacgttcccttcgaccttagtctggtaacatgccaggaagaaataatagttagggtcaaatcaacgaatgctgtggcattagccagtcctacagcttccgtggaagttctgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="121433" stop="122752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121733" g_stop="122452" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E380031" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E380031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121733" e_stop="122452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCTGTCCCTTAAATCCTCATCTCCTTTCAGCTTAGCTCCTGAATAAAGGTCTTTTACCACGATTACCAGTTAGCGCCTCTCTTTCTTAGGTGGTGCTAATTCCCTTAATCAAACAGAAATGCATCCTTATTTTTTGCTCTTCACTTCCACAATATTTATCTTGATCTATATACCGGGGTCTTTCTGTCAAGATGACGAACAATACAGGAGTTGTGGTGAGCCGTTTCGCTGCGGCAGCATGGATATAGTTTACCCTTTTTGGGGAGGGAGAAAACCAGAGTATTGTGGTCATCCAAGTTTTGAGATCAAGTGCGAAAATAACATCCCCAAAATTACTATTGAATCAACAGGATACGAAGTGATAGGTATCAACACCCCTAATAGAATTGTAACCCTGGCTCGCGATGATTTACTGAGTAATATTTGTTTGGATAATCCTGAGAATGCCTCCTTTGATTTAAACACTTTCAGCTATCTTTCGAGTGACCTGAATATTACTCTTTATTTCGGCTGCACCCTCCGCCCTGGTTCGCAATTACCAGCTTCGTCTCCAAATAGATTCAATTGCAATAGCAATATATTTGGTATATATACGCTGATCAACGTTCCCTTCGACCTTAGTCTGGTAACATGCCAGGAAGAAATAATAGTTAGGGTCAATCAAACGAATGCTGTGGCATTAGCCAGTCCTACAGCTTCCGTGGAAGTTCTGAAA</genome_strand>
        <mrna_strand>CTTTCTCTGTCCCTTAAATCCTCATCTCCTTTCAGCTTAGCTCCTGAATAAAGGTCTTTTACCACGATTACCAGTTAGCGCCTCTCTTTCTTAGGTGGTGCTAATTCCCTTAATCAAACAGAAATGCATCCTTATTTTTTGCTCTTCACTTCCACAATATTTATCTTGATCTATATACCGGGGTCTTTCTGTCAAGATGACGAACAATACAGGAGTTGTGGTGAGCCGTTTCGCTGCGGCAGCATGGATATAGTTTACCCTTTTTGGGGAGGGAGAAAACCAGAGTATTGTGGTCATCCAAGTTTTGAGATCAAGTGCGAAAATAACATCCCCAAAATTACTATTGAATCAACAGGATACGAAGTGATAGGTATCAACACCCCTAATAGAATTGTAACCCTGGCTCGCGATGATTTACTGAGTAATATTTGTTTGGATAATCCTGAGAATGCCTCCTTTGATTTAAACACTTTCAGCTATCTTTCGAGTGACCTGAATATTACTCTTTATTTCGGCTGCACCCTCCGCCCTGGTTCGCAATTACCAGCTTCGTCTCCAAATAGATTCAATTGCAATAGCAATATATTTGGTATATATACGCTGATCAACGTTCCCTTCGACCTTAGTCTGGTAACATGCCAGGAAGAAATAATAGTTAGGGTCAAATCAACGAATGCTGTGGCATTAGCCAGTCCTACAGCTTCCGTGGAAGTTCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E208290" ref_strand="+" ref_description="SGN-E208290 [cLEC-37-J20]">
      <seq>ctttctctgtcccttaaatcctcatctcctttcagcttagctcctgaataaaggtcttttaccacgattaccagttagcgcctctctttcttaggtggtgctaattcccttaatcaaacagaaatgcatccttattttttgctcttcacttccacaatatttatcttgatctatataccggggtctttctgtcaagatgacgaacaatacaggagttgtggtgagccgtttcgctgcggcagcatggatatagtttaccctttttggggagggagaaaaccagagtattgtggtcatccaagttttgagatcaagtgcgaaaataacatccccaaaattactattgaatcaacaggatacgaagtgataggtatcaacacccctaatagaattgtaaccctggctcgcgatgatttactgagtaatatttgtttggataatcctgagaatgcctcctttgatttaaacactttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="121433" stop="122508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121733" g_stop="122208" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E208290" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121733" e_stop="122208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCTGTCCCTTAAATCCTCATCTCCTTTCAGCTTAGCTCCTGAATAAAGGTCTTTTACCACGATTACCAGTTAGCGCCTCTCTTTCTTAGGTGGTGCTAATTCCCTTAATCAAACAGAAATGCATCCTTATTTTTTGCTCTTCACTTCCACAATATTTATCTTGATCTATATACCGGGGTCTTTCTGTCAAGATGACGAACAATACAGGAGTTGTGGTGAGCCGTTTCGCTGCGGCAGCATGGATATAGTTTACCCTTTTTGGGGAGGGAGAAAACCAGAGTATTGTGGTCATCCAAGTTTTGAGATCAAGTGCGAAAATAACATCCCCAAAATTACTATTGAATCAACAGGATACGAAGTGATAGGTATCAACACCCCTAATAGAATTGTAACCCTGGCTCGCGATGATTTACTGAGTAATATTTGTTTGGATAATCCTGAGAATGCCTCCTTTGATTTAAACACTTTCAG</genome_strand>
        <mrna_strand>CTTTCTCTGTCCCTTAAATCCTCATCTCCTTTCAGCTTAGCTCCTGAATAAAGGTCTTTTACCACGATTACCAGTTAGCGCCTCTCTTTCTTAGGTGGTGCTAATTCCCTTAATCAAACAGAAATGCATCCTTATTTTTTGCTCTTCACTTCCACAATATTTATCTTGATCTATATACCGGGGTCTTTCTGTCAAGATGACGAACAATACAGGAGTTGTGGTGAGCCGTTTCGCTGCGGCAGCATGGATATAGTTTACCCTTTTTGGGGAGGGAGAAAACCAGAGTATTGTGGTCATCCAAGTTTTGAGATCAAGTGCGAAAATAACATCCCCAAAATTACTATTGAATCAACAGGATACGAAGTGATAGGTATCAACACCCCTAATAGAATTGTAACCCTGGCTCGCGATGATTTACTGAGTAATATTTGTTTGGATAATCCTGAGAATGCCTCCTTTGATTTAAACACTTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379677" ref_strand="+" ref_description="SGN-E379677 [TUS-3-O4](-)">
      <seq>ccaaatagattcaattgcaatagcaatatatttggtatatatacgctgatcaacgttcccttcgaccttagtctggtaacatgccaggaagaaataatagttagggtcaatcaaacgaatgctgtggcattagccagtcctacagcttccgtggaagttctgaaaagagccattgctggcgggttttcagtaaactggacggcaactattgattcaaagtgcaaccaatgcgataggtcaggtggaagatgtggatccaatccagattctggagactttgcttgccattgtgaaaatggtactcatccaaacgactgcaacgacggaccaaaccaagccggcggtaatcttttctctattattactcataatttacttcgttcctccgtttccagataattacatgtcccatccatacataccagtcctttctcaagagatttgaattacaaacgctaacttagtaaagactctttcacaatcagtaaagtatcaatttaatatgaattttcttgcttgtatgaaaaaatcagaataactttgaagggaaaaaaaccccaattaataccttctccatcatcttgaaaaaatatttatttttggactaactagaaaacacagtatagtatggaccaacggaagtacttgttttgcattgcttatctagtattaaactctccataaaattttgtaggagttataatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="121988" stop="123294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122288" g_stop="122994" g_length="707"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E379677" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122288" e_stop="122994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATAGATTCAATTGCAATAGCAATATATTTGGTATATATACGCTGATCAACGTTCCCTTCGACCTTAGTCTGGTAACATGCCAGGAAGAAATAATAGTTAGGGTCAATCAAACGAATGCTGTGGCATTAGCCAGTCCTACAGCTTCCGTGGAAGTTCTGAAAAGAGCCATTGCTGGCGGGTTTTCAGTAAACTGGACGGCAACTATTGATTCAAAGTGCAACCAATGCGATAGGTCAGGTGGAAGATGTGGATCCAATCCAGATTCTGGAGACTTTGCTTGCCATTGTGAAAATGGTACTCATCCAAACGACTGCAACGACGGACCAAACCAAGCCGGCGGTAATCTTTTCTCTATTATTACTCATAATTTACTTCGTTCCTCCGTTTCCAGATAATTACATGTCCCATCCATACATACCAGTCCTTTCTCAAGAGATTTGAATTACAAACGCTAACTTAGTAAAGACTCTTTCACAATCAGTAAAGTATCAATTTAATATGAATTTTCTTGCTTGTATGAAAAAATCAGAATAACTTTGAAGGGAAAAAAACCCCAATTAATACCTTCTCCATCATCTTGAAAAAATATTTATTTTTGGACTAACTAGAAAACACAGTATAGTATGGACCAACGGAAGTACTTGTTTTGCATTGCTTATCTAGTATTAAACTCTCCATAAAATTTTGTACGTGTTATAATTTT</genome_strand>
        <mrna_strand>CCAAATAGATTCAATTGCAATAGCAATATATTTGGTATATATACGCTGATCAACGTTCCCTTCGACCTTAGTCTGGTAACATGCCAGGAAGAAATAATAGTTAGGGTCAATCAAACGAATGCTGTGGCATTAGCCAGTCCTACAGCTTCCGTGGAAGTTCTGAAAAGAGCCATTGCTGGCGGGTTTTCAGTAAACTGGACGGCAACTATTGATTCAAAGTGCAACCAATGCGATAGGTCAGGTGGAAGATGTGGATCCAATCCAGATTCTGGAGACTTTGCTTGCCATTGTGAAAATGGTACTCATCCAAACGACTGCAACGACGGACCAAACCAAGCCGGCGGTAATCTTTTCTCTATTATTACTCATAATTTACTTCGTTCCTCCGTTTCCAGATAATTACATGTCCCATCCATACATACCAGTCCTTTCTCAAGAGATTTGAATTACAAACGCTAACTTAGTAAAGACTCTTTCACAATCAGTAAAGTATCAATTTAATATGAATTTTCTTGCTTGTATGAAAAAATCAGAATAACTTTGAAGGGAAAAAAACCCCAATTAATACCTTCTCCATCATCTTGAAAAAATATTTATTTTTGGACTAACTAGAAAACACAGTATAGTATGGACCAACGGAAGTACTTGTTTTGCATTGCTTATCTAGTATTAAACTCTCCATAAAATTTTGTAGGAGTTATAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E398495" ref_strand="+" ref_description="SGN-E398495 [TUS-17-O10](-)">
      <seq>ccaatccagattttggagactttgcttgcccattgtgaaaatggtattcatccaaacgactgcaacgacggaccaaaccaagccggcggtaatcttttctctattattactcataatttacttcgttcctccgtttccagataattacatgtcccatccatacataccagtcctttctcaagagatttgaattacaaacgctaacttagtaaagactctttcacaatcagtaaagtatcaatttaatatgaattttcttgcttgtatgaaaaaatcagaataactttgaagggaaaaaaaccccaattaataccttctccatcatcttgaaaaaatatttatttttggactaactagaaaacacagtatagtatggaccaacggaagtacttgttttgcattgcttatctagtattaaactctccataaaattttgtacgtgttataattttgtccaaattccataggaaactcaatatactacagcctctagccctctatctaccagttccaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="122244" stop="123356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122544" g_stop="123049" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="513" polyA_stop="525"/>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E398495" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122544" e_stop="123049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATCCAGATTCTGGAGACTTTGCTTG-CCATTGTGAAAATGGTACTCATCCAAACGACTGCAACGACGGACCAAACCAAGCCGGCGGTAATCTTTTCTCTATTATTACTCATAATTTACTTCGTTCCTCCGTTTCCAGATAATTACATGTCCCATCCATACATACCAGTCCTTTCTCAAGAGATTTGAATTACAAACGCTAACTTAGTAAAGACTCTTTCACAATCAGTAAAGTATCAATTTAATATGAATTTTCTTGCTTGTATGAAAAAATCAGAATAACTTTGAAGGGAAAAAAACCCCAATTAATACCTTCTCCATCATCTTGAAAAAATATTTATTTTTGGACTAACTAGAAAACACAGTATAGTATGGACCAACGGAAGTACTTGTTTTGCATTGCTTATCTAGTATTAAACTCTCCATAAAATTTTGTACGTGTTATAATTTTGTCCAAATTCCATAGGAAACTCAATATACTACAGCCTCTAGCCCTCTATCTACCA</genome_strand>
        <mrna_strand>CCAATCCAGATTTTGGAGACTTTGCTTGCCCATTGTGAAAATGGTATTCATCCAAACGACTGCAACGACGGACCAAACCAAGCCGGCGGTAATCTTTTCTCTATTATTACTCATAATTTACTTCGTTCCTCCGTTTCCAGATAATTACATGTCCCATCCATACATACCAGTCCTTTCTCAAGAGATTTGAATTACAAACGCTAACTTAGTAAAGACTCTTTCACAATCAGTAAAGTATCAATTTAATATGAATTTTCTTGCTTGTATGAAAAAATCAGAATAACTTTGAAGGGAAAAAAACCCCAATTAATACCTTCTCCATCATCTTGAAAAAATATTTATTTTTGGACTAACTAGAAAACACAGTATAGTATGGACCAACGGAAGTACTTGTTTTGCATTGCTTATCTAGTATTAAACTCTCCATAAAATTTTGTACGTGTTATAATTTTGTCCAAATTCCATAGGAAACTCAATATACTACAGCCTCTAGCCCTCTATCTACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E451243" ref_strand="+" ref_description="SGN-E451243 [cSTS-12-M7]">
      <seq>tgagttcctcttctactccttcttcaaccactttcaccagaagcattccctcttacccctcttccaatctgaagctgattacgggaggggaagctcctactttggggctcatgtcttcagttttgctgaacttgaagaagccacgaataattttgaatcccatctaaagaacttggggactggtggttttggtgtcgtgtacctaatggcaaactccactgaatggtcgcgtggttgcagtcaagcgcttgtatgagaaccaatttcaagcgtgtggagcagttcatgaatgaagtagaagaattttaactcagctccgccacaagaacctagtgatgttgtatgggtgtacatctaaacgaagccgagagttactgcttgtttatgagtatataccaaacgggactgtggcagatcatctgcatggtaaacgggccaaatctggcttactctcttggcctatccgaatgaacatagccattgagactgctgaagctctggcttatctccactcctcagttataatacaccgtgacgtcaaaaccaacaacattctgttagacaatgatttccatgtgaaagttgctgattttgggctatcaagactgttcccaactaatgtcacacatgtctctactgctccacagggtacaccagnctacgnttgatcctgaatactaccaatgttaccagctcactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="126383" stop="127750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126683" g_stop="126886" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126887" i_stop="126963" i_length="77">
            <donor d_prob="0.987" d_score="0.78"/>
            <acceptor a_prob="0.917" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126964" g_stop="127450" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="701" r_length="493" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E451243" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126683" e_stop="126886"/>
          <exon e_start="126964" e_stop="127450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTTCCTCTTCTACTCCTTCTTCTACCACTTTCACCAGAAGCATTCCCTCTTATCCATCTTCCAAATCTGAAGCTGATTACGGGAGGGGAAGCTCCTACTTTGGGGCTCATGTCTTCAGTTTTGCTGAACTTGAAGAAGCGACGAATAATTTTG-AT-CCATCTAAAGAGCTTGGGGA-TGGTGGTTTTGGTGTCGTGTA-CT-ACGGTATGTGTGTTCTCTTTCTTGCATTATTATTATTTGGTGAGAGAGCTTCCTAACAATTCCAAGTAATTTGTTATCAGGCAAGCTCCA-TG-ATGGTCGCGTGGTTGCAGTCAAGCGCTTGTATGAGAA-CAATTTCAAGCGTGTGGAGCAGTTCATGAATGAAGTAG-AG-ATTTTAACTCAGCTACGCCACAAGAACCTAGTGACGTTGTATGGGTGTACATCTAAACGAAGCCGAGATTTACTCCTAGTTTATGAGTATATACCAAATGGGACAGTGGCAGATCATCTACATGGTAAACGGGCCAAATCTGGCTTACTCTCTTGGCCTGTCCGAATGAACATAGCCATTGAGACTGCTGAAGCCCTGGCTTATCTCCACTCCTCAATTATAATACACCGTGACGTCAAAACCAACAACATTCTGTTAGACAACGATTTCCATGTGAAAGTTGCTGATTTTGGGCTATCAAGACTGTTCCCAAATAATGTCACACATGTCTCTACTGCTCCACAGGGTACACCAGGCTACG-TTGATCCTGAATACTACCAATGTTACCAGCTCACTGA</genome_strand>
        <mrna_strand>TGAGTTCCTCTTCTACTCCTTCTTCAACCACTTTCACCAGAAGCATTCCCTCTTACCCCTCTTCC-AATCTGAAGCTGATTACGGGAGGGGAAGCTCCTACTTTGGGGCTCATGTCTTCAGTTTTGCTGAACTTGAAGAAGCCACGAATAATTTTGAATCCCATCTAAAGAACTTGGGGACTGGTGGTTTTGGTGTCGTGTACCTAATG.............................................................................GCAAACTCCACTGAATGGTCGCGTGGTTGCAGTCAAGCGCTTGTATGAGAACCAATTTCAAGCGTGTGGAGCAGTTCATGAATGAAGTAGAAGAATTTTAACTCAGCTCCGCCACAAGAACCTAGTGATGTTGTATGGGTGTACATCTAAACGAAGCCGAGAGTTACTGCTTGTTTATGAGTATATACCAAACGGGACTGTGGCAGATCATCTGCATGGTAAACGGGCCAAATCTGGCTTACTCTCTTGGCCTATCCGAATGAACATAGCCATTGAGACTGCTGAAGCTCTGGCTTATCTCCACTCCTCAGTTATAATACACCGTGACGTCAAAACCAACAACATTCTGTTAGACAATGATTTCCATGTGAAAGTTGCTGATTTTGGGCTATCAAGACTGTTCCCAACTAATGTCACACATGTCTCTACTGCTCCACAGGGTACACCAGNCTACGNTTGATCCTGAATACTACCAATGTTACCAGCTCACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E423878" ref_strand="+" ref_description="SGN-E423878 [STM-42-P13]">
      <seq>tgagttcctcttctactccttcttcaaccactttcaccagaagcattccctcttatccctcttccaaatctgaagctgattacgggaggggaagctcctactttggggctcatgtcttcagttttgctgaacttgaagaagccacgaataattttgatccatctaaagaacttggggatggtggttttggtgtcgtgtactatggcaaactccatgatggtcgcgtggttgcagtcaagcgcttgtatgagaacaatttcaagcgtgtggagcagttcatgaatgaagtagagattttaactcagctccgccacaagaacctagtgatgttgtatgggtgtacatctaaacgaagccgagagttactgcttgtttatgagtatataccaaacgggactgtggcagatcatctgcatggtaaacgggccaaatctggcttactctcttggcctatccgaatgaacatagccattgagactgctgaagctctggcttatctccactcctcagttataatacaccgtgacgtcaaaaccaacaacattctgttagaacatgatttccatgtgaaagttgctgattttgggctatcaagactgttcccaactaatgtcacacatgtctctactgctccacagggtacaccangctacgttgatcctgaatactaccaatgttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="126383" stop="127740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126683" g_stop="126886" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126887" i_stop="126963" i_length="77">
            <donor d_prob="0.987" d_score="0.96"/>
            <acceptor a_prob="0.917" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="126964" g_stop="127440" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="681" r_length="477" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E423878" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126683" e_stop="126886"/>
          <exon e_start="126964" e_stop="127440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTTCCTCTTCTACTCCTTCTTCTACCACTTTCACCAGAAGCATTCCCTCTTATCCATCTTCCAAATCTGAAGCTGATTACGGGAGGGGAAGCTCCTACTTTGGGGCTCATGTCTTCAGTTTTGCTGAACTTGAAGAAGCGACGAATAATTTTGATCCATCTAAAGAGCTTGGGGATGGTGGTTTTGGTGTCGTGTACTACGGTATGTGTGTTCTCTTTCTTGCATTATTATTATTTGGTGAGAGAGCTTCCTAACAATTCCAAGTAATTTGTTATCAGGCAAGCTCCATGATGGTCGCGTGGTTGCAGTCAAGCGCTTGTATGAGAACAATTTCAAGCGTGTGGAGCAGTTCATGAATGAAGTAGAGATTTTAACTCAGCTACGCCACAAGAACCTAGTGACGTTGTATGGGTGTACATCTAAACGAAGCCGAGATTTACTCCTAGTTTATGAGTATATACCAAATGGGACAGTGGCAGATCATCTACATGGTAAACGGGCCAAATCTGGCTTACTCTCTTGGCCTGTCCGAATGAACATAGCCATTGAGACTGCTGAAGCCCTGGCTTATCTCCACTCCTCAATTATAATACACCGTGACGTCAAAACCAACAACATTCTGTTAGACAACGATTTCCATGTGAAAGTTGCTGATTTTGGGCTATCAAGACTGTTCCCAAATAATGTCACACATGTCTCTACTGCTCCACAGGGTACACCAGGCTACGTTGATCCTGAATACTACCAATGTTACC</genome_strand>
        <mrna_strand>TGAGTTCCTCTTCTACTCCTTCTTCAACCACTTTCACCAGAAGCATTCCCTCTTATCCCTCTTCCAAATCTGAAGCTGATTACGGGAGGGGAAGCTCCTACTTTGGGGCTCATGTCTTCAGTTTTGCTGAACTTGAAGAAGCCACGAATAATTTTGATCCATCTAAAGAACTTGGGGATGGTGGTTTTGGTGTCGTGTACTATG.............................................................................GCAAACTCCATGATGGTCGCGTGGTTGCAGTCAAGCGCTTGTATGAGAACAATTTCAAGCGTGTGGAGCAGTTCATGAATGAAGTAGAGATTTTAACTCAGCTCCGCCACAAGAACCTAGTGATGTTGTATGGGTGTACATCTAAACGAAGCCGAGAGTTACTGCTTGTTTATGAGTATATACCAAACGGGACTGTGGCAGATCATCTGCATGGTAAACGGGCCAAATCTGGCTTACTCTCTTGGCCTATCCGAATGAACATAGCCATTGAGACTGCTGAAGCTCTGGCTTATCTCCACTCCTCAGTTATAATACACCGTGACGTCAAAACCAACAACATTCTGTTAGAACATGATTTCCATGTGAAAGTTGCTGATTTTGGGCTATCAAGACTGTTCCCAACTAATGTCACACATGTCTCTACTGCTCCACAGGGTACACCANGCTACGTTGATCCTGAATACTACCAATGTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243025" ref_strand="+" ref_description="SGN-E243025 [cLEF-1-J5]">
      <seq>acaatttcaagcgtgtggagcagttcatgaatgaagtagagattttaactcagctacgccacaagaacctagtgacgttgtatgggtgtacatctaaacgaagccgagatttactcctagtttatgagtatataccaaatgggacagtggcagatcatctacatggtaaacgggccaaatctggcttactctcttggcctgtccgaatgaacatagccattgagactgctgaagccctggcttatctccactcctcaattataatacaccgtgacgtcaaaaccaacaacattctgttagacaacgatttccatgtgaaagttgctgattttgggctatcaagactgttcccaaataatgtcacacatgtctctactgctccacagggtacaccaggctacgttgatcctgaatactaccaatgttaccagctcactgaaaagagtgatgtctatagttttggggtggtgttggtagagctgatctcatcattagaagctgtggataccaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="126712" stop="127824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127012" g_stop="127524" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E243025" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127012" e_stop="127524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTTCAAGCGTGTGGAGCAGTTCATGAATGAAGTAGAGATTTTAACTCAGCTACGCCACAAGAACCTAGTGACGTTGTATGGGTGTACATCTAAACGAAGCCGAGATTTACTCCTAGTTTATGAGTATATACCAAATGGGACAGTGGCAGATCATCTACATGGTAAACGGGCCAAATCTGGCTTACTCTCTTGGCCTGTCCGAATGAACATAGCCATTGAGACTGCTGAAGCCCTGGCTTATCTCCACTCCTCAATTATAATACACCGTGACGTCAAAACCAACAACATTCTGTTAGACAACGATTTCCATGTGAAAGTTGCTGATTTTGGGCTATCAAGACTGTTCCCAAATAATGTCACACATGTCTCTACTGCTCCACAGGGTACACCAGGCTACGTTGATCCTGAATACTACCAATGTTACCAGCTCACTGAAAAGAGTGATGTCTATAGTTTTGGGGTGGTGTTGGTAGAGCTGATCTCATCATTAGAAGCTGTGGATACCAACA</genome_strand>
        <mrna_strand>ACAATTTCAAGCGTGTGGAGCAGTTCATGAATGAAGTAGAGATTTTAACTCAGCTACGCCACAAGAACCTAGTGACGTTGTATGGGTGTACATCTAAACGAAGCCGAGATTTACTCCTAGTTTATGAGTATATACCAAATGGGACAGTGGCAGATCATCTACATGGTAAACGGGCCAAATCTGGCTTACTCTCTTGGCCTGTCCGAATGAACATAGCCATTGAGACTGCTGAAGCCCTGGCTTATCTCCACTCCTCAATTATAATACACCGTGACGTCAAAACCAACAACATTCTGTTAGACAACGATTTCCATGTGAAAGTTGCTGATTTTGGGCTATCAAGACTGTTCCCAAATAATGTCACACATGTCTCTACTGCTCCACAGGGTACACCAGGCTACGTTGATCCTGAATACTACCAATGTTACCAGCTCACTGAAAAGAGTGATGTCTATAGTTTTGGGGTGGTGTTGGTAGAGCTGATCTCATCATTAGAAGCTGTGGATACCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E545984" ref_strand="+" ref_description="SGN-E545984 [TUS-69-B21](-)">
      <seq>cgttgatcctgaatactaccaatgttaccagctcactgaaaagagtgatgtctatagttttggggtggtcttggtagagctgatctcatcattagaagctgtggataccagcaggcaccgccatgatattaatttgtctaatatggctgtcaacaagatccaaggtcattcaattcatgaattagttgatccaactcttggattctcaacaaacagctccgtgaggaggatgactacattagtcgcagagttagctttccgatgtctgcaacaagagagagatctgagaccttcaatgcaagaagtgctggagacattgagaggcatccagaatggagagtcgaaagcacacaatgctgaggtactggatattgtggtagatgatgttgggctcctaaaggactccctttcttctccggattcagttgccgctaacaaatgagttgacagctccacaccacattctagtggatgaaatatgtttttcaggttggttgaattcgatgcaaggtgaggaagcaactactactatggcacttgtgatcagtatctcgcgtcttccatagataattaatttcttatttttgcttacatatagttatgttgttatcgtcaatattttctgtgggagattatttaaaactgcttttcgcataaggcaatgtatataaatagtgaccgacattctagtatacatatgcatctctgctcttttgaaaaaaaaaaaaaaaaaaaaactcgaggggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="127112" stop="128440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127412" g_stop="128144" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="724" r_length="724" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="725" polyA_stop="738"/>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E545984" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127412" e_stop="128144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTGATCCTGAATACTACCAATGTTACCAGCTCACTGAAAAGAGTGATGTCTATAGTTTTGGGGTGGTGTTGGTAGAGCTGATCTCATCATTAGAAGCTGTGGATACCAACAGGCACCGCCATGATATTAATTTGTCTAATATGGCTGTCAACAAGATCCAAGGTCATTCAATTCATGAATTAGTTGATCCAACTCTTGGATTCTCAACAAACAGCTCCGTGAGGAGGATGACTACATTAGTCGCAGAGTTAGCTTTCCGATGTCTGCAACAAGAGAGAGATCTGAGACCTTCAATGCAAGAAGTGCTGGAGACATTGAGAGGCATCCAGAATGGAGAGTCGAAAGCACACAATGCTGAGGTACTGGATATTGTGGTAGATGATGCTGGGCTCCTAAAGGACTCCCTTTCTTCTCCGGATTCAGTTGCCGCTGACAAATGAGTTGACAGCTCCACACCACATTCTAGTGGATGAAATATGTTTTTCAGGTCGGTTGAATTCGATGCAAGGTGAGGAAGCAACTACTATTATGGCACTTGTGATCAGTATCTCGCGTCTTCCATAGATAATTTATTTCTTATTTTTGCTTACATATAGTTATGTTGCTATCGTCAATATTTTCTGTGGGAGATTATCTAAAACTGCTTTTCGCATAAGGCAATGTATAAAAATAGTGAATAGGGCTGCCAACATTCTAGTATACATATGCATCTCTGCTCTTTTGTATACCAG</genome_strand>
        <mrna_strand>CGTTGATCCTGAATACTACCAATGTTACCAGCTCACTGAAAAGAGTGATGTCTATAGTTTTGGGGTGGTCTTGGTAGAGCTGATCTCATCATTAGAAGCTGTGGATACCAGCAGGCACCGCCATGATATTAATTTGTCTAATATGGCTGTCAACAAGATCCAAGGTCATTCAATTCATGAATTAGTTGATCCAACTCTTGGATTCTCAACAAACAGCTCCGTGAGGAGGATGACTACATTAGTCGCAGAGTTAGCTTTCCGATGTCTGCAACAAGAGAGAGATCTGAGACCTTCAATGCAAGAAGTGCTGGAGACATTGAGAGGCATCCAGAATGGAGAGTCGAAAGCACACAATGCTGAGGTACTGGATATTGTGGTAGATGATGTTGGGCTCCTAAAGGACTCCCTTTCTTCTCCGGATTCAGTTGCCGCTAACAAATGAGTTGACAGCTCCACACCACATTCTAGTGGATGAAATATGTTTTTCAGGTTGGTTGAATTCGATGCAAGGTGAGGAAGCAACTACTACTATGGCACTTGTGATCAGTATCTCGCGTCTTCCATAGATAATTAATTTCTTATTTTTGCTTACATATAGTTATGTTGTTATCGTCAATATTTTCTGTGGGAGATTATTTAAAACTGCTTTTCGCATAAGGCAATGTATATAAATAGTG---A------CCGACATTCTAGTATACATATGCATCTCTGCTCTTTTGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549617" ref_strand="+" ref_description="SGN-E549617 [TUS-6-C16](-)">
      <seq>cagctcactgaaaagagtgatgtctatagttttggggtggtgttggtagagctgatctcatcattagaagctgtggataccaacaggcaccgccatgatattaatttgtctaatatggctgtcaacaagatccaaggtcattcaattcatgaattagttgatccaactcttggattctcaacaaacagctccgtgaggaggatgactacattagtcgcagagttagctttccgatgtctgcaacaagagagagatctgagaccttcaatgcaagaagtgctggagacattgagaggcatccagaatggagagtcgaaagcacacaatgctgaggtactggatattgtggtagatgatgctgggctcctaaaggactccctttcttctccggattcagttgccgctgacaaatgagttgacagctccacaccacattctagtggatgaaatatgtttttcaggtcggttgaattcgatgcaaggtgaggaagcaactactattatggcacttgtgatcagtatctcgcgtcttccatagataatttatttcttatttttgctggcatatagttatgttgctatcgtcaatattttctgtgggagattatctaaaactgctttggacataaggcaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="127140" stop="128360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127440" g_stop="128076" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="637" r_length="637" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E549617" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127440" e_stop="128076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTCACTGAAAAGAGTGATGTCTATAGTTTTGGGGTGGTGTTGGTAGAGCTGATCTCATCATTAGAAGCTGTGGATACCAACAGGCACCGCCATGATATTAATTTGTCTAATATGGCTGTCAACAAGATCCAAGGTCATTCAATTCATGAATTAGTTGATCCAACTCTTGGATTCTCAACAAACAGCTCCGTGAGGAGGATGACTACATTAGTCGCAGAGTTAGCTTTCCGATGTCTGCAACAAGAGAGAGATCTGAGACCTTCAATGCAAGAAGTGCTGGAGACATTGAGAGGCATCCAGAATGGAGAGTCGAAAGCACACAATGCTGAGGTACTGGATATTGTGGTAGATGATGCTGGGCTCCTAAAGGACTCCCTTTCTTCTCCGGATTCAGTTGCCGCTGACAAATGAGTTGACAGCTCCACACCACATTCTAGTGGATGAAATATGTTTTTCAGGTCGGTTGAATTCGATGCAAGGTGAGGAAGCAACTACTATTATGGCACTTGTGATCAGTATCTCGCGTCTTCCATAGATAATTTATTTCTTATTTTTGCTTACATATAGTTATGTTGCTATCGTCAATATTTTCTGTGGGAGATTATCTAAAACTGCTTTTCGCATAAGGCAATGT</genome_strand>
        <mrna_strand>CAGCTCACTGAAAAGAGTGATGTCTATAGTTTTGGGGTGGTGTTGGTAGAGCTGATCTCATCATTAGAAGCTGTGGATACCAACAGGCACCGCCATGATATTAATTTGTCTAATATGGCTGTCAACAAGATCCAAGGTCATTCAATTCATGAATTAGTTGATCCAACTCTTGGATTCTCAACAAACAGCTCCGTGAGGAGGATGACTACATTAGTCGCAGAGTTAGCTTTCCGATGTCTGCAACAAGAGAGAGATCTGAGACCTTCAATGCAAGAAGTGCTGGAGACATTGAGAGGCATCCAGAATGGAGAGTCGAAAGCACACAATGCTGAGGTACTGGATATTGTGGTAGATGATGCTGGGCTCCTAAAGGACTCCCTTTCTTCTCCGGATTCAGTTGCCGCTGACAAATGAGTTGACAGCTCCACACCACATTCTAGTGGATGAAATATGTTTTTCAGGTCGGTTGAATTCGATGCAAGGTGAGGAAGCAACTACTATTATGGCACTTGTGATCAGTATCTCGCGTCTTCCATAGATAATTTATTTCTTATTTTTGCTGGCATATAGTTATGTTGCTATCGTCAATATTTTCTGTGGGAGATTATCTAAAACTGCTTTGGACATAAGGCAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E545943" ref_strand="+" ref_description="SGN-E545943 [TUS-69-A21](-)">
      <seq>aaaagagtgatgtctatagttttggggtggtcttggtagagctgatctcatcattagaagctgtggataccagcaggcaccgccatgatattaatttgtctaatatggctgtcaacaagatccaaggtcattcaattcatgaattagttgatccaactcttggattctcaacaaacagctccgtgaggaggatgactacattagtcgcagagttagctttccgatgtctgcaacaagagagagatctgagtccttcaatgcaagaagtgctggagacattgagaggcatccagaatggagagtcgaaagcactcaatgctgaggtactggatattgtggtagatgatgttgggctcctaaaggactccctttcttctccggattcagttgccgctaacaaatgagttgacagctccacaccacattctagtggatgaaatatgtttttcaggttggttgaattcgatccaaggtgaggaagcaactattactatggcacttgtgatcagtatctcgcgtcttccatagataattaatttcttatttttgcttacatatagttatgttgttatcgtcaatattttctgtgggagattatttaaaactgcttttcgcataagccaatgtatataaatagtgaccgacattctagtatacatatgcatctctgctcttttgtgaccaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="127150" stop="128437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127450" g_stop="128144" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="685" r_length="685" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E545943" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127450" e_stop="128144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAGTGATGTCTATAGTTTTGGGGTGGTGTTGGTAGAGCTGATCTCATCATTAGAAGCTGTGGATACCAACAGGCACCGCCATGATATTAATTTGTCTAATATGGCTGTCAACAAGATCCAAGGTCATTCAATTCATGAATTAGTTGATCCAACTCTTGGATTCTCAACAAACAGCTCCGTGAGGAGGATGACTACATTAGTCGCAGAGTTAGCTTTCCGATGTCTGCAACAAGAGAGAGATCTGAGACCTTCAATGCAAGAAGTGCTGGAGACATTGAGAGGCATCCAGAATGGAGAGTCGAAAGCACACAATGCTGAGGTACTGGATATTGTGGTAGATGATGCTGGGCTCCTAAAGGACTCCCTTTCTTCTCCGGATTCAGTTGCCGCTGACAAATGAGTTGACAGCTCCACACCACATTCTAGTGGATGAAATATGTTTTTCAGGTCGGTTGAATTCGATGCAAGGTGAGGAAGCAACTACTATTATGGCACTTGTGATCAGTATCTCGCGTCTTCCATAGATAATTTATTTCTTATTTTTGCTTACATATAGTTATGTTGCTATCGTCAATATTTTCTGTGGGAGATTATCTAAAACTGCTTTTCGCATAAGGCAATGTATAAAAATAGTGAATAGGGCTGCCAACATTCTAGTATACATATGCATCTCTGCTCTTTTGTATACCAG</genome_strand>
        <mrna_strand>AAAAGAGTGATGTCTATAGTTTTGGGGTGGTCTTGGTAGAGCTGATCTCATCATTAGAAGCTGTGGATACCAGCAGGCACCGCCATGATATTAATTTGTCTAATATGGCTGTCAACAAGATCCAAGGTCATTCAATTCATGAATTAGTTGATCCAACTCTTGGATTCTCAACAAACAGCTCCGTGAGGAGGATGACTACATTAGTCGCAGAGTTAGCTTTCCGATGTCTGCAACAAGAGAGAGATCTGAGTCCTTCAATGCAAGAAGTGCTGGAGACATTGAGAGGCATCCAGAATGGAGAGTCGAAAGCACTCAATGCTGAGGTACTGGATATTGTGGTAGATGATGTTGGGCTCCTAAAGGACTCCCTTTCTTCTCCGGATTCAGTTGCCGCTAACAAATGAGTTGACAGCTCCACACCACATTCTAGTGGATGAAATATGTTTTTCAGGTTGGTTGAATTCGATCCAAGGTGAGGAAGCAACTATTACTATGGCACTTGTGATCAGTATCTCGCGTCTTCCATAGATAATTAATTTCTTATTTTTGCTTACATATAGTTATGTTGTTATCGTCAATATTTTCTGTGGGAGATTATTTAAAACTGCTTTTCGCATAAGCCAATGTATATAAATAGTG---A------CCGACATTCTAGTATACATATGCATCTCTGCTCTTTTGT-GACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734073" ref_strand="+" ref_description="SGN-E734073 [LB11CH02]">
      <seq>cagtcggtccatattattcggccgtactaaatccttcccaattccccccatcttcactaccatttttgctaaccaaaaaaacaatagttaaaatttgtcgaaatacgtacctcagatcgcaacgaaaatggctactttgcagaaattcaagcttctcgcaactcaatgtgcagtagcaggaagtccaacccggagtccaacaacaagcccagttattcacctccgccgacggaagactctccgtatgctcctcagtcgtagcatcggcggcggaagtggccgtaggctgcctcgacgggaagtctgttcgccggatcggtttgttggagatcgcgattcgacggagaaggggaaggaactggtggtcagtcataagctgaaggacttgtttgtttcgtcgcctccgtcgtttgctgaaaatacgagacaaggactctcgccggcagcctctggtgccggcggcgggtttagttcaggatcagctgttcggcgaataggcttacgctcgcttcggccgttatcagcgacattccggcaacggctactgcggagggcttggcggcctgtacttgtgagcatacccgagtaaattaccaatttactaggtatattgtacctgattaattagagataaaataaatacgagtagtacaatcatatattaggagttaaaacttattanattctctctgattttgtggcaaagtatatccatttcacagcttaattccgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="130826" stop="132160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131126" g_stop="131859" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="734" r_length="734" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="735" polyA_stop="745"/>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E734073" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131126" e_stop="131859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACGGTCCATATTATTCGGCCGTACTAAATCCTTCCCAATTCCCCCCATCTTCACTACCATTTTTGCTAACCAAAAAAACAATAGTTAAAATTTGTCGAAATACGTACCTCAGATCGCAACGAAAATGGCTACTTTGCAGAAATTCAAGCTTCTCGCAACTCAATGTGCAGTAGCAGGAAGTCCAACCCGGAGTCCAACAACAAGCCCAGTTATTCACCTCCGCCGACGGAAGACTCTCCGTATGCTCCTCAGTCGTAGCATCGGCGGCGGAAGTGGCCGTAGGCTGCCTCGACGGGAAGTCTGTTCGCCGGATCGGTTTGTTGGAGATCGCGATTCGACGGAGAAGGGGAAGGAACTGGTGGTCAGTCATAAGCTGAAGGACTTGTTTGTTTCGTCGCCTCCGTCGTTTGCTGAAAATACGAGACAAGGACTCTCGCCGGCAGCCTCTGGTGCCGGCGGCGGGTTTAGTTCAGGATCAGCTGTTCGGCGAATAGGCTTACGCTCGCTTCGGCCGTTATCAGCGACATTCCGGCAACGGCTACTGCGGAGGGCTTGGCGGCCTGTACTTGTGAGCATACCCGAGTAAATTACCAATTTACTAGGTATATTGTACCTGATTAATTAGAGATAAAATAAATACGAGTAGTACAATCATATATTAGGAGTTAAAACTTATTAAATTCTCTCTGATTTTGTGGCAAAGTATATCCATTTCACAGCTTAATTCCGTA</genome_strand>
        <mrna_strand>CAGTCGGTCCATATTATTCGGCCGTACTAAATCCTTCCCAATTCCCCCCATCTTCACTACCATTTTTGCTAACCAAAAAAACAATAGTTAAAATTTGTCGAAATACGTACCTCAGATCGCAACGAAAATGGCTACTTTGCAGAAATTCAAGCTTCTCGCAACTCAATGTGCAGTAGCAGGAAGTCCAACCCGGAGTCCAACAACAAGCCCAGTTATTCACCTCCGCCGACGGAAGACTCTCCGTATGCTCCTCAGTCGTAGCATCGGCGGCGGAAGTGGCCGTAGGCTGCCTCGACGGGAAGTCTGTTCGCCGGATCGGTTTGTTGGAGATCGCGATTCGACGGAGAAGGGGAAGGAACTGGTGGTCAGTCATAAGCTGAAGGACTTGTTTGTTTCGTCGCCTCCGTCGTTTGCTGAAAATACGAGACAAGGACTCTCGCCGGCAGCCTCTGGTGCCGGCGGCGGGTTTAGTTCAGGATCAGCTGTTCGGCGAATAGGCTTACGCTCGCTTCGGCCGTTATCAGCGACATTCCGGCAACGGCTACTGCGGAGGGCTTGGCGGCCTGTACTTGTGAGCATACCCGAGTAAATTACCAATTTACTAGGTATATTGTACCTGATTAATTAGAGATAAAATAAATACGAGTAGTACAATCATATATTAGGAGTTAAAACTTATTANATTCTCTCTGATTTTGTGGCAAAGTATATCCATTTCACAGCTTAATTCCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E323813" ref_strand="+" ref_description="SGN-E323813 [cTOC-5-N6]">
      <seq>ttattcggtcgtactaaatccttggcaattccccgcatcttcactaccatttttgctaaccaaaaaaacaatagttaaaatttgtcgaaatacgtacctcagatcgcaacgaaaatggctactttgcagaaattcaagcttctcgcaactcaatgtgcagtagcaggaagtccaacccggagtccaacaacaagcccagttattcacctccgccgacggaagactctccgtatgctcctcagtcgtagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="130839" stop="131689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131139" g_stop="131389" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E323813" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>251</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131139" e_stop="131389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTCGGCCGTACTAAATCCTTCCCAATTCCCCCCATCTTCACTACCATTTTTGCTAACCAAAAAAACAATAGTTAAAATTTGTCGAAATACGTACCTCAGATCGCAACGAAAATGGCTACTTTGCAGAAATTCAAGCTTCTCGCAACTCAATGTGCAGTAGCAGGAAGTCCAACCCGGAGTCCAACAACAAGCCCAGTTATTCACCTCCGCCGACGGAAGACTCTCCGTATGCTCCTCAGTCGTAGCAT</genome_strand>
        <mrna_strand>TTATTCGGTCGTACTAAATCCTTGGCAATTCCCCGCATCTTCACTACCATTTTTGCTAACCAAAAAAACAATAGTTAAAATTTGTCGAAATACGTACCTCAGATCGCAACGAAAATGGCTACTTTGCAGAAATTCAAGCTTCTCGCAACTCAATGTGCAGTAGCAGGAAGTCCAACCCGGAGTCCAACAACAAGCCCAGTTATTCACCTCCGCCGACGGAAGACTCTCCGTATGCTCCTCAGTCGTAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E618781" ref_strand="+" ref_description="SGN-E618781 [69463]">
      <seq>agacggtccatattcttcggccttactaaatcctctgaattcccttcccaattccccctctcttcactcccatttttgctaaccaaaaaaaattactagtactgtttaatttgtagaaatacttacttcagatcgcaacgaaaatggctactttacagaaattcaagcttctcgcaactcaatgtgcagtagcaggaagtccaacgcgaagcccaacaacaagcccagttattcacctccgccgacggaagactctccgtatgctcctcagccgtagtatcggcggcggcggaagtggtcgtaggctgccgcgacgggaagtctgttcgccggatcggttcgttggagaacgcgattcgacggaaaaggggaaggaacttgtggtcagtcataagctgaaggacttgtttgtttcgtcgcctccgtcgtttgctgaaaatacgagacaaggactctcgccggcagcctctggtgccggcggcggatttagtgcgggatcatctgttcggagaataggtttacgttcgcttcggccgttatcggcgacattccggcaacggctactgaggagggcttggcgacctgtacttgtgagcatacccgagtaaaaaccaatttactaggtatattgtacctgattaactagagataaaataaatacgagtagtgcaatcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="130894" stop="132084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131158" g_stop="131784" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="677" r_length="635" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E618781" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E618781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131158" e_stop="131784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCCCAATTCCCCCCATCTTCACTACCATTTTTGCTAACC--AAAAAA--AC-AATAGT-TAAAATTTGTCGAAATACGTACCTCAGATCGCAACGAAAATGGCTACTTTGCAGAAATTCAAGCTTCTCGCAACTCAATGTGCAGTAGCAGGAAGTCCAACCCGGAGTCCAACAACAAGCCCAGTTATTCACCTCCGCCGACGGAAGACTCTCCGTATGCTCCTCAGTCGTAGCAT---CGGCGGCGGAAGTGGCCGTAGGCTGCCTCGACGGGAAGTCTGTTCGCCGGATCGGTTTGTTGGAGATCGCGATTCGACGGAGAAGGGGAAGGAACTGGTGGTCAGTCATAAGCTGAAGGACTTGTTTGTTTCGTCGCCTCCGTCGTTTGCTGAAAATACGAGACAAGGACTCTCGCCGGCAGCCTCTGGTGCCGGCGGCGGGTTTAGTTCAGGATCAGCTGTTCGGCGAATAGGCTTACGCTCGCTTCGGCCGTTATCAGCGACATTCCGGCAACGGCTACTGCGGAGGGCTTGGCGGCCTGTACTTGTGAGCATACCCGAGTAAATTACCAATTTACTAGGTATATTGTACCTGATTAATTAGAGATAAAATAAATACGAGTAGTACAATCATA</genome_strand>
        <mrna_strand>CCTTCCCAATTCCCCCTCTCTTCACTCCCATTTTTGCTAACCAAAAAAAATTACTAGTACTGTTTAATTTGTAGAAATACTTACTTCAGATCGCAACGAAAATGGCTACTTTACAGAAATTCAAGCTTCTCGCAACTCAATGTGCAGTAGCAGGAAGTCCAACGCGAAGCCCAACAACAAGCCCAGTTATTCACCTCCGCCGACGGAAGACTCTCCGTATGCTCCTCAGCCGTAGTATCGGCGGCGGCGGAAGTGGTCGTAGGCTGCCGCGACGGGAAGTCTGTTCGCCGGATCGGTTCGTTGGAGAACGCGATTCGACGGAAAAGGGGAAGGAACTTGTGGTCAGTCATAAGCTGAAGGACTTGTTTGTTTCGTCGCCTCCGTCGTTTGCTGAAAATACGAGACAAGGACTCTCGCCGGCAGCCTCTGGTGCCGGCGGCGGATTTAGTGCGGGATCATCTGTTCGGAGAATAGGTTTACGTTCGCTTCGGCCGTTATCGGCGACATTCCGGCAACGGCTACTGAGGAGGGCTTGGCGACCTGTACTTGTGAGCATACCCGAGTAAA-AACCAATTTACTAGGTATATTGTACCTGATTAACTAGAGATAAAATAAATACGAGTAGTGCAATCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E604543" ref_strand="+" ref_description="SGN-E604543 [74679]">
      <seq>agaaatacttacttcagatcgcaacgaaaatggctactttacagaaattcaagcttctcgcaactcaatgtgcagtagcaggaagtccaacgcgaagcccaacaacaagcccagttattcacctccgccgacggaagactctccgtatgctcctcagccgtagtatcggcggcggcggaagtggtcgtaggctgccgcgacgggaagtctgttcgccggatcggttcgttggagaacgcgattcgacggaaaaggggaaggaacttgtggtcagtcataagctgaaggacttgtttgtttcgtcgcctccgtcgtttgctgaaaatacgagacaaggactctcgccggcagcctctggtgccggcggcggatttagtgcgggatcatctgttcggagaataggtttacgttcgcttcggccgttatcggcgacattccggcaacggctactgaggagggcttggcgacctgtacttgtgagcatacccgagtaaattaccaatttactaggtatattgtacctgattaactagagataaaataaatacgagtagtgcaatcatatattaggagttaaaaacttattaatcctctttgattttgtgtggcagagtatatccttttacgtagcttaattccgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="130925" stop="132145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131224" g_stop="131859" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="642" r_length="642" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E604543" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E604543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131224" e_stop="131859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAATACGTACCTCAGATCGCAACGAAAATGGCTACTTTGCAGAAATTCAAGCTTCTCGCAACTCAATGTGCAGTAGCAGGAAGTCCAACCCGGAGTCCAACAACAAGCCCAGTTATTCACCTCCGCCGACGGAAGACTCTCCGTATGCTCCTCAGTCGTAGCAT---CGGCGGCGGAAGTGGCCGTAGGCTGCCTCGACGGGAAGTCTGTTCGCCGGATCGGTTTGTTGGAGATCGCGATTCGACGGAGAAGGGGAAGGAACTGGTGGTCAGTCATAAGCTGAAGGACTTGTTTGTTTCGTCGCCTCCGTCGTTTGCTGAAAATACGAGACAAGGACTCTCGCCGGCAGCCTCTGGTGCCGGCGGCGGGTTTAGTTCAGGATCAGCTGTTCGGCGAATAGGCTTACGCTCGCTTCGGCCGTTATCAGCGACATTCCGGCAACGGCTACTGCGGAGGGCTTGGCGGCCTGTACTTGTGAGCATACCCGAGTAAATTACCAATTTACTAGGTATATTGTACCTGATTAATTAGAGATAAAATAAATACGAGTAGTACAATCATATATTAGGAGTT-AAAACTTATTAAATTCTCTCTGA-TTT-TGTGGCAAAGTATATCCATTT-CACAGCTTAATTCCGTA</genome_strand>
        <mrna_strand>AGAAATACTTACTTCAGATCGCAACGAAAATGGCTACTTTACAGAAATTCAAGCTTCTCGCAACTCAATGTGCAGTAGCAGGAAGTCCAACGCGAAGCCCAACAACAAGCCCAGTTATTCACCTCCGCCGACGGAAGACTCTCCGTATGCTCCTCAGCCGTAGTATCGGCGGCGGCGGAAGTGGTCGTAGGCTGCCGCGACGGGAAGTCTGTTCGCCGGATCGGTTCGTTGGAGAACGCGATTCGACGGAAAAGGGGAAGGAACTTGTGGTCAGTCATAAGCTGAAGGACTTGTTTGTTTCGTCGCCTCCGTCGTTTGCTGAAAATACGAGACAAGGACTCTCGCCGGCAGCCTCTGGTGCCGGCGGCGGATTTAGTGCGGGATCATCTGTTCGGAGAATAGGTTTACGTTCGCTTCGGCCGTTATCGGCGACATTCCGGCAACGGCTACTGAGGAGGGCTTGGCGACCTGTACTTGTGAGCATACCCGAGTAAATTACCAATTTACTAGGTATATTGTACCTGATTAACTAGAGATAAAATAAATACGAGTAGTGCAATCATATATTAGGAGTTAAAAACTTATT-AATCCTCTTTGATTTTGTGTGGCAGAGTATATCCTTTTACGTAGCTTAATTCCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321315" ref_strand="+" ref_description="SGN-E321315 [cTOB-23-F17]">
      <seq>cttctcgcaactcaatgtgcagtagcaggaagtccaacccggagtccaacaacaagcccagttattcacctccgccgacggaagactctccgtatgctcctcagtcgtagcatcggcggcggaagtggccgtaggctgcctcgacgggaagtctgttcgccggatcggtttgttggagatcgcgattcgacggagaaggggaaggaactggtggtcagtcataagctgaaggacttgtttgtttcgtcgcctccgtcgtttgctgaaaatacgagacaaggactctcgccggcagcctctggtgccggcggcgggtttagttcaggatcagctgttcggcgaataggcttacgctcgcttcggccgttatcagcgacattccggcaacggctactgcggagggcttggcggcctgtacttgtgagcatacccgagtaaattaccaatttactaggtatattgtacctgattaattagagataaaataaatacgagtagtacaatcatatattaggagttaaaacttattaaattctctctgattttgtggcaaagtatatccatttcacagcttaattccgtaatttttccaatgttacggcaaattagcatgaacaatgatcgtaaatttgaaatttcatgaatgacntttaatctaaaagttcactttgtatttctctaatttaattatgtngtgtaaggttgaaagcaaaattagttccaaatttcatcttttgtgtctagaatctacagtaaagtgattgatttaagttttgctggattgntcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="130977" stop="132368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131277" g_stop="132072" g_length="796"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="796" r_length="796" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E321315" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131277" e_stop="132072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCGCAACTCAATGTGCAGTAGCAGGAAGTCCAACCCGGAGTCCAACAACAAGCCCAGTTATTCACCTCCGCCGACGGAAGACTCTCCGTATGCTCCTCAGTCGTAGCATCGGCGGCGGAAGTGGCCGTAGGCTGCCTCGACGGGAAGTCTGTTCGCCGGATCGGTTTGTTGGAGATCGCGATTCGACGGAGAAGGGGAAGGAACTGGTGGTCAGTCATAAGCTGAAGGACTTGTTTGTTTCGTCGCCTCCGTCGTTTGCTGAAAATACGAGACAAGGACTCTCGCCGGCAGCCTCTGGTGCCGGCGGCGGGTTTAGTTCAGGATCAGCTGTTCGGCGAATAGGCTTACGCTCGCTTCGGCCGTTATCAGCGACATTCCGGCAACGGCTACTGCGGAGGGCTTGGCGGCCTGTACTTGTGAGCATACCCGAGTAAATTACCAATTTACTAGGTATATTGTACCTGATTAATTAGAGATAAAATAAATACGAGTAGTACAATCATATATTAGGAGTTAAAACTTATTAAATTCTCTCTGATTTTGTGGCAAAGTATATCCATTTCACAGCTTAATTCCGTAATTTTTCCAATGTTACGGCAAATTAGCATGAACAATGATCGTAAATTTGAAATTTCATGAATGAC-TTTAATCTAAAAAGTTCACTTTGTATTTCTCTAATTTAATTATGT-GTGTAAGGTTGAAGCAAAAAATTAGTTCCAAATTTCATCTTTTGTGTCTAGAATCTACAGTAAAGTGATTGATTAAAGTTTTGCTGGATTGTTCAAACACTGA</genome_strand>
        <mrna_strand>CTTCTCGCAACTCAATGTGCAGTAGCAGGAAGTCCAACCCGGAGTCCAACAACAAGCCCAGTTATTCACCTCCGCCGACGGAAGACTCTCCGTATGCTCCTCAGTCGTAGCATCGGCGGCGGAAGTGGCCGTAGGCTGCCTCGACGGGAAGTCTGTTCGCCGGATCGGTTTGTTGGAGATCGCGATTCGACGGAGAAGGGGAAGGAACTGGTGGTCAGTCATAAGCTGAAGGACTTGTTTGTTTCGTCGCCTCCGTCGTTTGCTGAAAATACGAGACAAGGACTCTCGCCGGCAGCCTCTGGTGCCGGCGGCGGGTTTAGTTCAGGATCAGCTGTTCGGCGAATAGGCTTACGCTCGCTTCGGCCGTTATCAGCGACATTCCGGCAACGGCTACTGCGGAGGGCTTGGCGGCCTGTACTTGTGAGCATACCCGAGTAAATTACCAATTTACTAGGTATATTGTACCTGATTAATTAGAGATAAAATAAATACGAGTAGTACAATCATATATTAGGAGTTAAAACTTATTAAATTCTCTCTGATTTTGTGGCAAAGTATATCCATTTCACAGCTTAATTCCGTAATTTTTCCAATGTTACGGCAAATTAGCATGAACAATGATCGTAAATTTGAAATTTCATGAATGACNTTTAATCT-AAAAGTTCACTTTGTATTTCTCTAATTTAATTATGTNGTGTAAGGTTGAA-AGCAAAATTAGTTCCAAATTTCATCTTTTGTGTCTAGAATCTACAGTAAAGTGATTGATTTAAGTTTTGCTGGATTGNTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E687727" ref_strand="+" ref_description="SGN-E687727 [T3_tus_79_K13]">
      <seq>ttatatctcccgccaaagcttgtcattcaaattcttcattttgagaaactgaattgaacaacgccgccggcatttccattccccagttttccgatgtcggcttctttacccaagatggaggcgctttattctaagctctacagcaagtacgctaagctcaagaaagaaaaagacactagcatggagaacctgaatcgggaacaagaggagaaatttgtgaattatgtggctgctgccgatgcagtgattgaccacttgagaagtgaaacggacagactaaaggaacaagtaaatgagttgaggagtgaaatgacatcaatgaggtctgccaatgatgaagaaatgattcgataccaaaagcttttgatggaagagaacctgaagaatacggaactccgtgatgaaattcagaggcttcaacaacatgatcagcaggggacctgtttcaacgctagcaatgataaaggaaaaagcagacaaattattactgatggagattttcttccagatgcattggatgactcaaccataacaaaacaagaaacactttaggcagtctttgctcattgtacaagacacacatacaccgtctcccatggaagaacttccaaatagacctgaacaaccaagtacgagttcatataagtacaccaagcctgcttgctgtagaagaaatgttgacatttcagggtgatagtgctgctgacatattctccagccttgtgcatcttccaagaccttggtcaatggttagtccggatgaaatttttttgctggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="135498" stop="138762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135796" g_stop="135909" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135910" i_stop="136043" i_length="134">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136044" g_stop="136091" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="162" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136092" i_stop="136235" i_length="144">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="136236" g_stop="136305" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="232" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="136306" i_stop="136569" i_length="264">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="136570" g_stop="136660" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="323" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="136661" i_stop="136739" i_length="79">
            <donor d_prob="0.446" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="136740" g_stop="136801" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="385" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="136802" i_stop="137897" i_length="1096">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="137898" g_stop="138166" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="655" r_length="270" r_score="0.993"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="138167" i_stop="138263" i_length="97">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.213" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="138264" g_stop="138297" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="689" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="138298" i_stop="138376" i_length="79">
            <donor d_prob="0.930" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="138377" g_stop="138462" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="778" r_length="89" r_score="0.872"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E687727" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135796" e_stop="135909"/>
          <exon e_start="136044" e_stop="136091"/>
          <exon e_start="136236" e_stop="136305"/>
          <exon e_start="136570" e_stop="136660"/>
          <exon e_start="136740" e_stop="136801"/>
          <exon e_start="137898" e_stop="138166"/>
          <exon e_start="138264" e_stop="138297"/>
          <exon e_start="138377" e_stop="138462"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATATCTCCCGCCAAAGCTTGTCATTCAAATTCTTCATTTTGAGAAACTGAATTGAACAACGCCGCCGGCATTTCCATTCCCCAGTTTTCCGATGTCGGCTTCTTTACCCAAGGTATAGTTCCTGAATTCAGCTTTACATGTTTTTTTCACTGATAAATCTTCAAATCTGAATGTTAGGGTTAACCGGAGCAATTTCCATAACTAATATGGTTGTTTCGACGGGTTTTAATTTTTTTTTTGTTTCAGATGGAGGCGCTTTATTCTAAGCTCTACAGCAAGTACGCTAAGCTCAAGGTATATAGGGGTTTGTACGAGTTCATTTTTTAAATTTAATTTTTGAGCTGAGCTAGGTGGGAACTTAATGTGTTTTTCTGTTTATAGTTAGTGGTTTGCAAGAGTAAGATTTTTCATTCATTCATTCTTTTTTTTTTTTCGTAGAAAGAAAAAGACACTAGCATGGAGAACCTGAATCGGGAACAAGAGGAGAAATTTGTGAATTATGTGGCTGGTAGGATTATATTTGAAAGCTTACCTTAATTTTTATCTAATTATTATGGAATTTTCCCTTTTTATTTTGTAGCTATTACGTTTTGCCAATTTAAAGTTTGTATTTGTCATCTTCTTACACATCCTATACATTCGAGTCTCTGTTGAAAGTATGAAATTGTATTTCCAGATGATATCTTAACTTGGAGAACTCATAGGTGCTATTTTTAATTACATTAGATACAAACTTGGTTGAAGGTTTGACATGCAGCTTTGTTTCTTCCAGCTGCCGATGCAGTGATTGACCACTTGAGAAGTGAAACGGACAGACTAAAGGAACAAGTAAATGAGTTGAGGAGTGAAATGACATCAATGAGGTCTGCACTCATGAGAAAGGCTTACTCTATTCAGTAGGAATAATGAAAAGAATATAATGTGTACTTAACTCTGCTGCAGGTCTGCCAATGATGAAGAAATGATTCGATACCAAAAGCTTTTGATGGAAGAGAACCTGAAGAGTAAGGATAAATTTCAAGTCATGGTAGAACACTTATAATGTCTATAGTCCTATCTATATTTTCTGCTAGACAGCTAGGCAAGTTAGTATTGCTTTTAAAATATTGGATTTGTGGTTAAGTCTACGTATATGCAAGTTGTAGAAAATACCAGTGACTTCAGAGGTTCAATTTCTTGTTACTCTTATTGAAGCATAAAATTTCTAAGAGAGGTCTCTTTAGTTCAAACACGTTTGAATTTCAATCCATTTAGGACTTGATGTGATTTCTGTATGTCCATTTAGAAAGAGATGTTCAGCTTCAATGCTTGTTTGACAGTCTTAGCAATTGGTTGACGTCAGATGGGGTTTATTTCTTCATAACATTCTTTTTTATTTTATGCCTTTATCTGTCTACCTTCTACAAAACTAGATGCTCCATCTGTGTCTTCTACAGTGTTGTGAAAGGCGATTGCCTTGTCACAATGGCGAGAGGCAAGGTGAGGTGATCCTTCATCGCTTATTAGCTTTGTAGCAAGGCGACGCCATGATGACAAAGGCGAGAAAGGTGTCGGCTTTTATATTTTCTTAATATAGGCGACCAATTTAGAGTTCTAAAAGTTAAAAGGTAACTTTAGGGCTTTCTTTTCAAATTTGCACAGTTGCACTCTTATACTGCGTCTGCGACTCGAACCCCTCTACTCGACTAGACTTCTCCGACGACTCCAAAGTCCAAACAATACATAGTTCTTCTTCAAATTTCTTCTTACTCTGTTTCTTTTTCCTCTTCAGACTTCAGAGTTACTTCTACCTCTGTTTTTTCCTGTCTATTTTGACTTTTGTTCTATTTTATTCTCATTCAAGTTCTAGACTTATAGTAAGTACTTTCCTTTTTCAGTTTTTGAATTGAAATTTTTGCTAATATTTTATTGCTATAGGGATTTGCTAATTGCTCTATGAAGGCAACTATTCATTTTGTTCCTCTGGGGATTTTAGTGCTTCTTATAATGGCTTTGCTGTTTGCTGTTTACTTTTGACTTTTTTGGAGATTTATATTTGCATTTTGTTGAATAAGTATTCCAATTTTGAAATCCAAATAGTTATATAAATATTGCCTGCAGATACGGAACTCCGTGATGAAATTCAGAGGCTTCAACAACATGATCAGCAGGGGACCTGTTTCAACGCTAGCAATGATAAAGGAAAAAGCAGACAAATTATTACTGATGGAGATTTTCTTCCAGATGCATTGGATGACTCAACCATAAC-AAACAAGAAACACTTTAGGCAGTCTTTGCTCATTGTACAAGACACACATACACCGTCTCCCATGGAAGAACTTCCAAATAGACCTGAACAACCAAGTACGAGTTCATATAAGTACACCAAGGTCAGTGCTACTCTCCAATTTCTATCACATATGCTAGTTTATCCAGCAAACTTGAGCTGGGATTTTACTATTCTGACCATCAGGCAATATTTTGCAGCCTGCTTGCTGTAGAAGAAATGTTGACATTTCAGGTTTATCCCAACTTTAGTTGTTAATTTTAGTATGTGTCGTCTCCTCTTATGTAACTATTCCTTTGATGGGATATTTTAG-GTGATAGTGCTGCTGACATA-TCTCCAGCCTTGTGCATCTTCCAAGACCTTGTTCAGTGGTTAGTCGGTATGAAA-TTTTTTGCTGTT</genome_strand>
        <mrna_strand>TTATATCTCCCGCCAAAGCTTGTCATTCAAATTCTTCATTTTGAGAAACTGAATTGAACAACGCCGCCGGCATTTCCATTCCCCAGTTTTCCGATGTCGGCTTCTTTACCCAAG......................................................................................................................................ATGGAGGCGCTTTATTCTAAGCTCTACAGCAAGTACGCTAAGCTCAAG................................................................................................................................................AAAGAAAAAGACACTAGCATGGAGAACCTGAATCGGGAACAAGAGGAGAAATTTGTGAATTATGTGGCTG........................................................................................................................................................................................................................................................................CTGCCGATGCAGTGATTGACCACTTGAGAAGTGAAACGGACAGACTAAAGGAACAAGTAAATGAGTTGAGGAGTGAAATGACATCAATGAG...............................................................................GTCTGCCAATGATGAAGAAATGATTCGATACCAAAAGCTTTTGATGGAAGAGAACCTGAAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGGAACTCCGTGATGAAATTCAGAGGCTTCAACAACATGATCAGCAGGGGACCTGTTTCAACGCTAGCAATGATAAAGGAAAAAGCAGACAAATTATTACTGATGGAGATTTTCTTCCAGATGCATTGGATGACTCAACCATAACAAAACAAGAAACACTTTAGGCAGTCTTTGCTCATTGTACAAGACACACATACACCGTCTCCCATGGAAGAACTTCCAAATAGACCTGAACAACCAAGTACGAGTTCATATAAGTACACCAAG.................................................................................................CCTGCTTGCTGTAGAAGAAATGTTGACATTTCAG...............................................................................GGTGATAGTGCTGCTGACATATTCTCCAGCCTTGTGCATCTTCCAAGACCTTGGTCAATGGTTAGTCCGGATGAAATTTTTTTGCTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E325411" ref_strand="+" ref_description="SGN-E325411 [cTOC-1-G18]">
      <seq>catatctcccgccaaagcttgtcattcaaattcttcattttgagaaactgaattgaacaacgccgccggcatttccattccccagttttccgatgtcggcttctttacccaagatggaggcgctttattctaagctctacagcaagtacgctaagctcaagaaagaaaaagacactagcatggagaacctgaatcgggaacaagaggagaaatttgtgaattatgtggctgctgccgatgcagtgattgaccacttgagaagtgaaacggacagactaaaggaacaagtaaatgagttgaggagtgaaatgacatcaatgaggtctgccaatgatgaagaaatgattcgataccaaaagcttttgatggaagagaacctgaagaatacggaactccgtgatgaaattcagaggcttcaacaacatgatcagcaggggacctgtttcaacgctagcaatgataaaggaaaaagcagacaaattattactgatggagattttcttccagatgcattggatgactcaaccataacaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="135497" stop="138349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135797" g_stop="135909" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="135910" i_stop="136043" i_length="134">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="136044" g_stop="136091" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="161" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="136092" i_stop="136235" i_length="144">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="136236" g_stop="136305" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="231" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="136306" i_stop="136569" i_length="264">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="136570" g_stop="136660" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="322" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="136661" i_stop="136739" i_length="79">
            <donor d_prob="0.446" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="136740" g_stop="136801" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="384" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="136802" i_stop="137897" i_length="1096">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="137898" g_stop="138049" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="536" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E325411" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135797" e_stop="135909"/>
          <exon e_start="136044" e_stop="136091"/>
          <exon e_start="136236" e_stop="136305"/>
          <exon e_start="136570" e_stop="136660"/>
          <exon e_start="136740" e_stop="136801"/>
          <exon e_start="137898" e_stop="138049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATCTCCCGCCAAAGCTTGTCATTCAAATTCTTCATTTTGAGAAACTGAATTGAACAACGCCGCCGGCATTTCCATTCCCCAGTTTTCCGATGTCGGCTTCTTTACCCAAGGTATAGTTCCTGAATTCAGCTTTACATGTTTTTTTCACTGATAAATCTTCAAATCTGAATGTTAGGGTTAACCGGAGCAATTTCCATAACTAATATGGTTGTTTCGACGGGTTTTAATTTTTTTTTTGTTTCAGATGGAGGCGCTTTATTCTAAGCTCTACAGCAAGTACGCTAAGCTCAAGGTATATAGGGGTTTGTACGAGTTCATTTTTTAAATTTAATTTTTGAGCTGAGCTAGGTGGGAACTTAATGTGTTTTTCTGTTTATAGTTAGTGGTTTGCAAGAGTAAGATTTTTCATTCATTCATTCTTTTTTTTTTTTCGTAGAAAGAAAAAGACACTAGCATGGAGAACCTGAATCGGGAACAAGAGGAGAAATTTGTGAATTATGTGGCTGGTAGGATTATATTTGAAAGCTTACCTTAATTTTTATCTAATTATTATGGAATTTTCCCTTTTTATTTTGTAGCTATTACGTTTTGCCAATTTAAAGTTTGTATTTGTCATCTTCTTACACATCCTATACATTCGAGTCTCTGTTGAAAGTATGAAATTGTATTTCCAGATGATATCTTAACTTGGAGAACTCATAGGTGCTATTTTTAATTACATTAGATACAAACTTGGTTGAAGGTTTGACATGCAGCTTTGTTTCTTCCAGCTGCCGATGCAGTGATTGACCACTTGAGAAGTGAAACGGACAGACTAAAGGAACAAGTAAATGAGTTGAGGAGTGAAATGACATCAATGAGGTCTGCACTCATGAGAAAGGCTTACTCTATTCAGTAGGAATAATGAAAAGAATATAATGTGTACTTAACTCTGCTGCAGGTCTGCCAATGATGAAGAAATGATTCGATACCAAAAGCTTTTGATGGAAGAGAACCTGAAGAGTAAGGATAAATTTCAAGTCATGGTAGAACACTTATAATGTCTATAGTCCTATCTATATTTTCTGCTAGACAGCTAGGCAAGTTAGTATTGCTTTTAAAATATTGGATTTGTGGTTAAGTCTACGTATATGCAAGTTGTAGAAAATACCAGTGACTTCAGAGGTTCAATTTCTTGTTACTCTTATTGAAGCATAAAATTTCTAAGAGAGGTCTCTTTAGTTCAAACACGTTTGAATTTCAATCCATTTAGGACTTGATGTGATTTCTGTATGTCCATTTAGAAAGAGATGTTCAGCTTCAATGCTTGTTTGACAGTCTTAGCAATTGGTTGACGTCAGATGGGGTTTATTTCTTCATAACATTCTTTTTTATTTTATGCCTTTATCTGTCTACCTTCTACAAAACTAGATGCTCCATCTGTGTCTTCTACAGTGTTGTGAAAGGCGATTGCCTTGTCACAATGGCGAGAGGCAAGGTGAGGTGATCCTTCATCGCTTATTAGCTTTGTAGCAAGGCGACGCCATGATGACAAAGGCGAGAAAGGTGTCGGCTTTTATATTTTCTTAATATAGGCGACCAATTTAGAGTTCTAAAAGTTAAAAGGTAACTTTAGGGCTTTCTTTTCAAATTTGCACAGTTGCACTCTTATACTGCGTCTGCGACTCGAACCCCTCTACTCGACTAGACTTCTCCGACGACTCCAAAGTCCAAACAATACATAGTTCTTCTTCAAATTTCTTCTTACTCTGTTTCTTTTTCCTCTTCAGACTTCAGAGTTACTTCTACCTCTGTTTTTTCCTGTCTATTTTGACTTTTGTTCTATTTTATTCTCATTCAAGTTCTAGACTTATAGTAAGTACTTTCCTTTTTCAGTTTTTGAATTGAAATTTTTGCTAATATTTTATTGCTATAGGGATTTGCTAATTGCTCTATGAAGGCAACTATTCATTTTGTTCCTCTGGGGATTTTAGTGCTTCTTATAATGGCTTTGCTGTTTGCTGTTTACTTTTGACTTTTTTGGAGATTTATATTTGCATTTTGTTGAATAAGTATTCCAATTTTGAAATCCAAATAGTTATATAAATATTGCCTGCAGATACGGAACTCCGTGATGAAATTCAGAGGCTTCAACAACATGATCAGCAGGGGACCTGTTTCAACGCTAGCAATGATAAAGGAAAAAGCAGACAAATTATTACTGATGGAGATTTTCTTCCAGATGCATTGGATGACTCAACCATAACAAAC</genome_strand>
        <mrna_strand>CATATCTCCCGCCAAAGCTTGTCATTCAAATTCTTCATTTTGAGAAACTGAATTGAACAACGCCGCCGGCATTTCCATTCCCCAGTTTTCCGATGTCGGCTTCTTTACCCAAG......................................................................................................................................ATGGAGGCGCTTTATTCTAAGCTCTACAGCAAGTACGCTAAGCTCAAG................................................................................................................................................AAAGAAAAAGACACTAGCATGGAGAACCTGAATCGGGAACAAGAGGAGAAATTTGTGAATTATGTGGCTG........................................................................................................................................................................................................................................................................CTGCCGATGCAGTGATTGACCACTTGAGAAGTGAAACGGACAGACTAAAGGAACAAGTAAATGAGTTGAGGAGTGAAATGACATCAATGAG...............................................................................GTCTGCCAATGATGAAGAAATGATTCGATACCAAAAGCTTTTGATGGAAGAGAACCTGAAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGGAACTCCGTGATGAAATTCAGAGGCTTCAACAACATGATCAGCAGGGGACCTGTTTCAACGCTAGCAATGATAAAGGAAAAAGCAGACAAATTATTACTGATGGAGATTTTCTTCCAGATGCATTGGATGACTCAACCATAACAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E717687" ref_strand="+" ref_description="SGN-E717687 [FC02BG11]">
      <seq>gaatttccgccctctcacagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagagattctagttggcaaattagtatgttttacttctcattttggcaatcagatgaattcaaatctttgtgatggtaaaaaaaaaaaaaaaaaaaaattacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146612" stop="95697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146313" g_stop="146234" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="231" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="427" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143508" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="799" r_length="372" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="143507" i_stop="142263" i_length="1245">
            <donor d_prob="0.198" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="142262" g_stop="142235" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="800" r_stop="827" r_length="28" r_score="0.714"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E717687" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146313" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143508"/>
          <exon e_start="142262" e_stop="142235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTCCGCCCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTAATTTTCAGTTTTTGCAATTTAAGTAGGAATTATTCAACTACACAATTGTGTTACTGCAATGCTTAAGCGTTTCAAGTAAATCAGGTTTGGGGCTGGATGTTTGGCATAGAATGCATACAAGTACATCATTGGTGTTTGCGTTTAGTCTCTCCTCTTTCTCTAAACATCTTGTCAATCTTATCATGCGCCATTACATGCATTATGCTTGAAATAGTTTGGATGTCTATCTCAATTGCACATAATGCGTAAAAGCAAATACTTTTATATTGTAGAATAATCAAGTATTTGAGATGACAAAAAATAAAGTTAGGAAATCAAATAAGTCGAGGGTTTTATACTCTCTCCGTTTTATTTTATGTGACAATATTTGGCCGGACGCAAAATTAAAAATATAATAAAGACTTTGAAATGCTTATCAAATTGTTCTTCAAAAAAGTAAATTCATTTTCTCTCTCCTCATAAATATATTAGAGTATTATGTTTAAAATTACGTCGGACCAACAAGAGTAAAAGATGAATTGTACCTAAAATACTTACCGTATAAGTAAATGTGACATTTTTTTTGAGACTGACCAAAATGAAAATAGTGTCACATAAAATAGGATGAGCGGAGTATACAAAATGATAGAAATATAATTATTTAATTTACTATTGGGTTATAGGTTAATTCGTTAAGAAAAAACTCCAAATCGTTAAGAACTAATAACCCAAGAACAAAAAAAATTGAAATCGTTATCAAAACCGCTAAACCAATAACCCGATACTGATAATTCAATTTTTTTTTGATTCGAATTATCGATTTCGATTCGATTTTGAACAACCTTACCTAGGATCTAAAACCATGATGCAGGGAAATATATATACTCTAGCCCAACTAGTCAACAATAAATAGCAACTTATTATCTCTAATAGAGGTCGTTTGGTAGAGTTATTATAAAATATAATGCATGCATTAAGTGTGTATTAGTAGTATTTTGATTGGTATTCTTTTTTTTAGTCATACACTATTGTGTATTAGGTTGTGTATTACTCATATCAATTAATTCAAGATATTTTATACATAACATTAAACACTTGCATTAGATTAAATAATTACAAAACTACCCTCAAAGCATTTTAATGCATTTACTTTTTTCTTTCTTTCTTGTCATATGTTTATTTTTATTTTTATTTGTTTTTCAATGTTTTTTTAATTTATTGGTATTTTAATAGACTTTATGGCTTCTCAAGTATCTTTTTTTTTTAAAAAAATAATAATAATCAAATTCCA</genome_strand>
        <mrna_strand>GAATTTCCGCCCTCTCACAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAAAAAAAAAAAAAAAAATTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E719941" ref_strand="+" ref_description="SGN-E719941 [FC09BD02]">
      <seq>agacaatttccgccctctcaaagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcaaaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagagattctagttggcaaattagtatgttttacttctcattttggcaatcagatgaattcaaatctttgtgatggtaattttcagtttttgcaattttagtaggaattatnntcactaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146615" stop="8270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146316" g_stop="146234" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="234" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="430" r_length="196" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143469" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="841" r_length="411" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="143468" i_stop="142808" i_length="661">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="142807" g_stop="142776" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="842" r_stop="873" r_length="32" r_score="0.688"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E719941" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146316" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143469"/>
          <exon e_start="142807" e_stop="142776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACAATTTCCGCCCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTAATTTTCAGTTTTTGCAATTTAAGTAGGAATTATTCAACTACACAATTGTGTTACTGCAATGCTTAAGCGTTTCAAGTAAATCAGGTTTGGGGCTGGATGTTTGGCATAGAATGCATACAAGTACATCATTGGTGTTTGCGTTTAGTCTCTCCTCTTTCTCTAAACATCTTGTCAATCTTATCATGCGCCATTACATGCATTATGCTTGAAATAGTTTGGATGTCTATCTCAATTGCACATAATGCGTAAAAGCAAATACTTTTATATTGTAGAATAATCAAGTATTTGAGATGACAAAAAATAAAGTTAGGAAATCAAATAAGTCGAGGGTTTTATACTCTCTCCGTTTTATTTTATGTGACAATATTTGGCCGGACGCAAAATTAAAAATATAATAAAGACTTTGAAATGCTTATCAAATTGTTCTTCAAAAAAGTAAATTCATTTTCTCTCTCCTCATAAATATATTAGAGTATTATGTTTAAAATTACGTCGGACCAACAAGAGTAAAAGATGAATTGTACCTAAAATACTTACCGTATAAGTAAATGTGACATTTTTTTTGAGACTGACCAAAATGAAAATAGTGTCACATAAAATAGGATGAGCGGAGTATACAAAATGATAGAAATATAATTATTTAATTTACTATTGGGTTATAGGTTAATTCGTTAAGAAAAAACTCCAAATCGTTAAGAACTAATAACCCAAGAACAAAAAAAATTGAAA</genome_strand>
        <mrna_strand>AGACAATTTCCGCCCTCTCAAAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAAAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTAATTTTCAGTTTTTGCAATTTTAGTAGGAATTATNNT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E567068" ref_strand="-" ref_description="SGN-E567068 [11136]">
      <seq>cgggattcagcacagggtcactaaggaggattcaatgaagtggttnccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggatcagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagagattctagtgggcaaatcagtatgttttatttctcatttgggcaatcagatgaattcaaatctttgttaaaaaaaaaaaaaaaanctcgagactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="144080" stop="8265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143780" g_stop="143514" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="143513" i_stop="142843" i_length="671">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="142842" g_stop="142813" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="299" r_length="31" r_score="0.567"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E567068" ref_strand="-">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567068" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="143780" e_stop="143514"/>
          <exon e_start="142842" e_stop="142813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTT-CCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTAATTTTCAGTTTTTGCAATTTAAGTAGGAATTATTCAACTACACAATTGTGTTACTGCAATGCTTAAGCGTTTCAAGTAAATCAGGTTTGGGGCTGGATGTTTGGCATAGAATGCATACAAGTACATCATTGGTGTTTGCGTTTAGTCTCTCCTCTTTCTCTAAACATCTTGTCAATCTTATCATGCGCCATTACATGCATTATGCTTGAAATAGTTTGGATGTCTATCTCAATTGCACATAATGCGTAAAAGCAAATACTTTTATATTGTAGAATAATCAAGTATTTGAGATGACAAAAAATAAAGTTAGGAAATCAAATAAGTCGAGGGTTTTATACTCTCTCCGTTTTATTTTATGTGACAATATTTGGCCGGACGCAAAATTAAAAATATAATAAAGACTTTGAAATGCTTATCAAATTGTTCTTCAAAAAAGTAAATTCATTTTCTCTCTCCTCATAAATATATTAGAGTATTATGTTTAAAATTACGTCGGACCAACAAGAGTAAAAGATGAATTGTACCTAAAATACTTACCGTATAAGTAAATGTGACATTTTTTTTGAGACTGACCAAAATGAAAATAGTGTCACATAAAATAGGATGAGCGGAGTATACAAAATGATAGAAATATAATTATTTAATTTACTATTGGGTTATAGGTTAATTCGTTAAGAAAAAACTCCA-AATCG</genome_strand>
        <mrna_strand>CGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTNCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGATCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTGGGCAAATCAGTATGTTTTATTTCTCATTTGGGCAATCAGATGAATTCAAATCTTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAAAAAAAAAAAAAAANCTCGAGACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E423101" ref_strand="-" ref_description="SGN-E423101 [STM-41-D5]">
      <seq>acccctccaactctgctgccgcagctgtaacatcttcccgcggaagcgccatggcttcagagaagaaattgagcaaccccatgagggatatcaaggtccagaagcttgtcctcaacatctccgtcggtgagagtggagatcgactcaccagagcagcaaaagtcttggagcaacttagcggccaatcccctgttttctctaaagcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaatcaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaaatctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggatcagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagagattctagtgggcaaatcagtatgttttatttctcattttggcaatcagatgaattcaaatctttgttatggtcattgtcagaaaatgcaatttaagtaggaattattcaaccaaaaaaataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146586" stop="95701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146286" g_stop="146234" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="204" r_length="151" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="400" r_length="196" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143461" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="819" r_length="419" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="143460" i_stop="142843" i_length="618">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="0.966" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="142842" g_stop="142823" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="820" r_stop="839" r_length="20" r_score="0.550"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E423101" ref_strand="-">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E423101" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="146286" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143461"/>
          <exon e_start="142842" e_stop="142823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTAATTTTCAGTTTTTGCAATTTAAGTAGGAATTATTCAACTACACAATTGTGTTACTGCAATGCTTAAGCGTTTCAAGTAAATCAGGTTTGGGGCTGGATGTTTGGCATAGAATGCATACAAGTACATCATTGGTGTTTGCGTTTAGTCTCTCCTCTTTCTCTAAACATCTTGTCAATCTTATCATGCGCCATTACATGCATTATGCTTGAAATAGTTTGGATGTCTATCTCAATTGCACATAATGCGTAAAAGCAAATACTTTTATATTGTAGAATAATCAAGTATTTGAGATGACAAAAAATAAAGTTAGGAAATCAAATAAGTCGAGGGTTTTATACTCTCTCCGTTTTATTTTATGTGACAATATTTGGCCGGACGCAAAATTAAAAATATAATAAAGACTTTGAAATGCTTATCAAATTGTTCTTCAAAAAAGTAAATTCATTTTCTCTCTCCTCATAAATATATTAGAGTATTATGTTTAAAATTACGTCGGACCAACAAGAGTAAAAGATGAATTGTACCTAAAATACTTACCGTATAAGTAAATGTGACATTTTTTTTGAGACTGACCAAAATGAAAATAGTGTCACATAAAATAGGATGAGCGGAGTATACAAAATGATAGAAATATAATTATTTAATTTACTATTGGGTTATAGGTTAATTCGTTAAGAAAAAA</genome_strand>
        <mrna_strand>ACCCCTCCAACTCTGCTGCCGCAGCTGTAACATCTTCCCGCGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAACATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCAAAAGTCTTGGAGCAACTTAGCGGCCAATCCCCTGTTTTCTCTAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATCAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAATCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGATCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTGGGCAAATCAGTATGTTTTATTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTTATGGTCATTGTCAGAAAATGCAATTTAAGTAGGAATTATTCAACCAAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E271704" ref_strand="+" ref_description="SGN-E271704 [cLEM-23-P15]">
      <seq>aaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagagattctagttggcaaattagtatgttttacttctcattttggcaatcagatgaattcaaatctttgtgatggtaattttcagtttttgcaatttaagtaggaattattcaactaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="144627" stop="143160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144327" g_stop="144206" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="143879" g_stop="143455" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="547" r_length="425" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E271704" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144327" e_stop="144206"/>
          <exon e_start="143879" e_stop="143455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTAATTTTCAGTTTTTGCAATTTAAGTAGGAATTATTCAACTACACAATTGTG</genome_strand>
        <mrna_strand>AAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTAATTTTCAGTTTTTGCAATTTAAGTAGGAATTATTCAACTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E690096" ref_strand="+" ref_description="SGN-E690096 [LH_Ea02J22]">
      <seq>ctttgatatcaaggtccataagcttgtcctcaatatctccctctgtgagagtggagatcgactcaccagagcagcaaaagtcttggagcaacttaacggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggatcagcttgtctcctggcaagtttgtttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagggattctagttggcaaattagtatgttttacttctcattttggcaatcagatgaattcaaatctttgtgatggtcactttcagttgttgcaatttaagtaggaattatttaactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146401" stop="143160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146105" g_stop="145984" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.918"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="318" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="143879" g_stop="143456" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="742" r_length="424" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E690096" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146105" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTAATTTTCAGTTTTTGCAATTTAAGTAGGAATTATTCAACTACACAATTGT</genome_strand>
        <mrna_strand>CTTTGATATCAAGGTCCATAAGCTTGTCCTCAATATCTCCCTCTGTGAGAGTGGAGATCGACTCACCAGAGCAGCAAAAGTCTTGGAGCAACTTAACGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGATCAGCTTGTCTCCTGGCAAGTTTGTTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGGGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTCACTTTCAGTTGTTGCAATTTAAGTAGGAATTATTTAACTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E691201" ref_strand="+" ref_description="SGN-E691201 [LH_Ea05H23]">
      <seq>ccgtttaactctaaggcaaggtatactgtgcggtcctttggccttaagagtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtgccttgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggatcagcttgtctcctggcaagtttgtttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagggattctagttggcaaattagtatgttttacttctcattttggcaatcagatgaattcaaatctttgtgatggtcactttcagttgttgcaatttaagtaggaattatttaactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="144715" stop="143160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="212" r_length="196" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="143879" g_stop="143456" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="636" r_length="424" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E691201" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTAATTTTCAGTTTTTGCAATTTAAGTAGGAATTATTCAACTACACAATTGT</genome_strand>
        <mrna_strand>CAAGGTATACTGTGCGGTCCTTTGGCCTTAAGAGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGCCTTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGATCAGCTTGTCTCCTGGCAAGTTTGTTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGGGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTCACTTTCAGTTGTTGCAATTTAAGTAGGAATTATTTAACTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E271702" ref_strand="+" ref_description="SGN-E271702 [cLEM-23-P11]">
      <seq>aaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagagattctagttggcaaattagtatgttttacttctcattttggcaatcagatgaattcaaatctttgtgatggtaattttcagtttttgcaatttaagtaggaattattcaactaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="144627" stop="143160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144327" g_stop="144206" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="143879" g_stop="143458" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="544" r_length="422" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E271702" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144327" e_stop="144206"/>
          <exon e_start="143879" e_stop="143458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTAATTTTCAGTTTTTGCAATTTAAGTAGGAATTATTCAACTACACAATT</genome_strand>
        <mrna_strand>AAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTAATTTTCAGTTTTTGCAATTTAAGTAGGAATTATTCAACTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731357" ref_strand="+" ref_description="SGN-E731357 [LA26DE10]">
      <seq>gtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagagattctagttggcaaattagtatgttttacttctcattttggcaatcagatgaattcaaatctttgtgatggtaatttttcgtttttgcaatttaagtaggatttattcanctannnaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146594" stop="143165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146294" g_stop="146234" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="212" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="408" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143461" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="827" r_length="419" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="828" polyA_stop="843"/>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E731357" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146294" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTAATTTTCAGTTTTTGCAATTTAAGTAGGAATTATTCAACTACACA</genome_strand>
        <mrna_strand>GTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTAATTTTTCGTTTTTGCAATTTAAGTAGGATTTATTCANCTANNNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E695041" ref_strand="+" ref_description="SGN-E695041 [LH_Ea05H23](-)">
      <seq>gttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggatcagcttgtctcctggcaagtttgtttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagggattctagttggcaaattagtatgttttacttctcatttgggcaatcagatgaattcaaatctttgtgatggtcactatcggttgttgcaatttaagtaggaattattaactaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="144707" stop="143160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="209" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="143879" g_stop="143461" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="627" r_length="418" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="628" polyA_stop="637"/>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E695041" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTAATTTTCAGTTTTTGCAATTTAAGTAGGAATTATTCAACTACACA</genome_strand>
        <mrna_strand>CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGATCAGCTTGTCTCCTGGCAAGTTTGTTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGGGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTGGGCAATCAGATGAATTCAAATCTTTGTGATGGTCACTATCGGTTGTTGCAATTTAAGTAGGAATTATT-AACTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288501" ref_strand="+" ref_description="SGN-E288501 [cLES-8-F13]">
      <seq>tagttgaataatggctacttaaattgcaaaaactgaaaattaccatcacaaagatttgaattcatctgattgccaaaatgagaagtaaaacacactaatgtgccaactagaatctctccaaaacattcctttaatagtaatatcgatggctgtctacaaaaatacataaaaataaacttgccaggagactagctggtccaaaagttggcactcagcttatcactgaatgtttgaggacttgttaaggataacacccctatatttgacctggaaccacttcattgaatcctccttagtgaccctgggctgaataccgactcgagacttgcacctgcgacgacgggcaacacggaagccagggcgctccaatacaacataaaaatccattccataaatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="143165" stop="144163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="143465" g_stop="143863" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E288501" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="143465" e_stop="143863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTTGAATAATTCCTACTTAAATTGCAAAAACTGAAAATTACCATCACAAAGATTTGAATTCATCTGATTGCCAAAATGAGAAGTAAAACATACTAATTTGCCAACTAGAATCTCTCCAAAACATTCCTTTAATAGTAATATCGATGGCTGTCTACAAAAATACATAAAAATAAACTTGCCAGGAGACAAGCTGGTCCAAAAGTTGGCACTCAGCTTATCACTGAATGTTTGAGGACTTGTTAAGGATAACACCTTCATATTTGACCTGGAACCACTTCATTGAATCCTCCTTAGTGACCCTGTGCTGAATCCCGACTCGAGACTTGCACCTGCGACGACGGGCAACACGGTAGCCAGGGCGCTCCAATACAACATAGAAATCCATTCCATAAATACC</genome_strand>
        <mrna_strand>TAGTTGAATAATGGCTACTTAAATTGCAAAAACTGAAAATTACCATCACAAAGATTTGAATTCATCTGATTGCCAAAATGAGAAGTAAAACACACTAATGTGCCAACTAGAATCTCTCCAAAACATTCCTTTAATAGTAATATCGATGGCTGTCTACAAAAATACATAAAAATAAACTTGCCAGGAGACTAGCTGGTCCAAAAGTTGGCACTCAGCTTATCACTGAATGTTTGAGGACTTGTTAAGGATAACACCCCTATATTTGACCTGGAACCACTTCATTGAATCCTCCTTAGTGACCCTGGGCTGAATACCGACTCGAGACTTGCACCTGCGACGACGGGCAACACGGAAGCCAGGGCGCTCCAATACAACATAAAAATCCATTCCATAAATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390982" ref_strand="-" ref_description="SGN-E390982 [TUS-47-D7]">
      <seq>aagggaatacgagttgttggagaaggaaatttcagtgagacccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagagattctagttggcaaattagtatgttttacttctcattttggcaatcagatgaattcaaatctttgtgatggtaattttcagtttttgcaatttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="144591" stop="95700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144292" g_stop="144206" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="143879" g_stop="143467" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="503" r_length="413" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E390982" ref_strand="-">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390982" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="144292" e_stop="144206"/>
          <exon e_start="143879" e_stop="143467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGAATACGAGTTGTT-GAGAAGG-AACTTCAGTGAGA-CCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTAATTTTCAGTTTTTGCAATTTAAGTAGGAATTATTCAAC</genome_strand>
        <mrna_strand>AAGGGAATACGAGTTGTTGGAGAAGGAAATTTCAGTGAGACCCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTAATTTTCAGTTTTTGCAATTTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E717890" ref_strand="+" ref_description="SGN-E717890 [FC03AB09]">
      <seq>gaatttccgccctctcagagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagagattctagttggcaaattagtatgttttacttctcattttggcaatcagatgaattcaaatctttgtgatggtaattttcagtttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146612" stop="143191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146313" g_stop="146234" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="231" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="427" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143491" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="816" r_length="389" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E717890" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146313" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTCCGCCCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTAATTTTCAGTTTTTG</genome_strand>
        <mrna_strand>GAATTTCCGCCCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTAATTTTCAGTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E722264" ref_strand="+" ref_description="SGN-E722264 [FC16DA02]">
      <seq>aatcggccgaattggccctctcagagtcccattaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagagattctagttggcaaattagtatgttttacttctcattttggcaatcagatgaattcaaatctttgtgatggtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146605" stop="143204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146320" g_stop="146234" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="237" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="433" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143508" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="805" r_length="372" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E722264" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146320" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACGACAATTTCCGCCCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATG</genome_strand>
        <mrna_strand>AATCGGCCGAATT-GGCCCTCTCAGAGTCCCATTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E721749" ref_strand="+" ref_description="SGN-E721749 [FC15AF09]">
      <seq>gggcgattggcggccaatcggccgaattagacaatttccgccctctcagagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagagattctagttggcaaattagtatgttttacttctcattttggcaatcagatgaattcaaatctttgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146620" stop="143209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146315" g_stop="146234" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="111" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="262" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="458" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143509" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="829" r_length="371" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E721749" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146315" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAATTTCCGCCCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGAT</genome_strand>
        <mrna_strand>GACAATTTCCGCCCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284666" ref_strand="+" ref_description="SGN-E284666 [cLES-3-O17]">
      <seq>tggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagagattctagttggcaaattagtatgttttacttctcattttggcaatcagatgaattcaaatctttgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="144604" stop="143209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144304" g_stop="144206" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="143879" g_stop="143509" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="470" r_length="371" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E284666" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="144304" e_stop="144206"/>
          <exon e_start="143879" e_stop="143509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGAT</genome_strand>
        <mrna_strand>TGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E423100" ref_strand="+" ref_description="SGN-E423100 [STM-41-D5]">
      <seq>acccctccaactctgctgccgcagctgtaacatcttcccgcggaagcgccatggcttcagagaagaaattgagcaaccccatgagggatatcaaggtccagaagcttgtcctcaacatctccgtcggtgagagtggagatcgactcaccagagcagcaaaagtcttggagcaacttagcggccaatcccctgttttctctaaagcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaatcaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaaatctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggatcagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagagattctagtgggcaaatcagtatgttttatttctcattttggcaatcagatgaattcaaatctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146586" stop="143213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146286" g_stop="146234" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="204" r_length="151" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="400" r_length="196" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143513" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="767" r_length="367" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E423100" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E423100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146286" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTG</genome_strand>
        <mrna_strand>ACCCCTCCAACTCTGCTGCCGCAGCTGTAACATCTTCCCGCGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAACATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCAAAAGTCTTGGAGCAACTTAGCGGCCAATCCCCTGTTTTCTCTAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATCAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAATCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGATCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTGGGCAAATCAGTATGTTTTATTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344976" ref_strand="+" ref_description="SGN-E344976 [cTOF-22-K24]">
      <seq>actctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagagattctagttggcaaattagtatgttttacttctcattttggcaatcagatgaattcaaatcttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146577" stop="143215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146277" g_stop="146234" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="195" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="391" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143514" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="757" r_length="366" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E344976" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146277" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTT</genome_strand>
        <mrna_strand>ACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E721246" ref_strand="+" ref_description="SGN-E721246 [FC13AH03]">
      <seq>gacgacaatttccgccctctcagagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagagattctagttggcaaattagtatgttttacttctcattttggcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146617" stop="143229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146318" g_stop="146234" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="236" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="432" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143529" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="783" r_length="351" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E721246" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146318" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGACAATTTCCGCCCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGA</genome_strand>
        <mrna_strand>GACGACAATTTCCGCCCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E335273" ref_strand="+" ref_description="SGN-E335273 [cTOE-1-K12]">
      <seq>ttcaacctctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagagattctagttggcaaattagtatgttttacttctcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146581" stop="143241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146281" g_stop="146234" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="200" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="396" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143541" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="735" r_length="339" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E335273" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146281" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAA-CTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATT</genome_strand>
        <mrna_strand>TTCAACCTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288148" ref_strand="-" ref_description="SGN-E288148 [cLES-7-M16]">
      <seq>gctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcacctggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtatttttgtagccagccatcgatattactattaaaggaatgttttggagagattctagttggcaaataagtatgtttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="144548" stop="143250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="144248" g_stop="144206" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="143879" g_stop="143550" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="373" r_length="330" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E288148" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288148" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="144248" e_stop="144206"/>
          <exon e_start="143879" e_stop="143550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTA</genome_strand>
        <mrna_strand>GCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCACCTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGCCAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATAAGTATGTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716175" ref_strand="+" ref_description="SGN-E716175 [FB16BC10]">
      <seq>catagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagagattctagttggcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146598" stop="143263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146298" g_stop="146234" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="216" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="412" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143561" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="731" r_length="319" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E716175" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E716175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146298" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATT</genome_strand>
        <mrna_strand>CATAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E715535" ref_strand="+" ref_description="SGN-E715535 [FB14CC08]">
      <seq>cagagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagagattctagttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146598" stop="143267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146298" g_stop="146234" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="216" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="412" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143568" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="724" r_length="312" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E715535" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146298" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTG</genome_strand>
        <mrna_strand>CAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344585" ref_strand="+" ref_description="SGN-E344585 [cTOF-14-M9]">
      <seq>tcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagagattctagttgggcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146580" stop="143263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146280" g_stop="146234" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="198" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="394" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143568" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="706" r_length="312" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="710" polyA_stop="723"/>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E344585" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146280" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTG</genome_strand>
        <mrna_strand>TCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E734806" ref_strand="+" ref_description="SGN-E734806 [LB13CE11]">
      <seq>agcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagagattctagttggcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146333" stop="143263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146033" g_stop="145984" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="246" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="143879" g_stop="143568" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="558" r_length="312" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="561" polyA_stop="570"/>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E734806" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146033" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTG</genome_strand>
        <mrna_strand>AGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E459854" ref_strand="+" ref_description="SGN-E459854 [cPRO-29-M9]">
      <seq>catctcagtacccctccaactctgccgccgcagctgtaacatcttcccgcggaagcgccatggcttcagagaagaaattgagcaaccccatgagggatatcaaggtccagaagcttgtcctcaacatctccgtcggtgagagtggagatcgactcaccagagcagcaaaagtcttggagcaacttagcggccaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatatgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaatcaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggttaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggttactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaaacagtcctcaaacattcagtgataagctgagtgccaacttttggatcagcttgtctcctggcaagttatttttatgtatttttgtagacagccatcgatattactattaaaggaatgttttggagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146437" stop="143277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146295" g_stop="146234" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="0.92"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="213" r_length="151" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="409" r_length="196" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143578" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="710" r_length="301" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="711" polyA_stop="722"/>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E459854" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146295" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAG</genome_strand>
        <mrna_strand>CATCTCAGTACCCCTCCAACTCTGCCGCCGCAGCTGTAACATCTTCCCGCGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAACATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCAAAAGTCTTGGAGCAACTTAGCGGCCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATCAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGTTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTTACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAAACAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGATCAGCTTGTCTCCTGGCAAG-TTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E461164" ref_strand="+" ref_description="SGN-E461164 [cPRO-7-B19]">
      <seq>catctcagtacccctccaactctgccgccgcagctgtaacatcttcccgcggaagcgccatggcttcagagaagaaattgagcaaccccatgagggatatcaaggtccagaagcttgtcctcaacatctccgtcggtgagagtggagatcgactcaccagagcagcaaaagtcttggagcaacttagcggccaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatatgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaatcaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggttaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggttactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggatcagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattactattaaagggatgttttggagnaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146437" stop="143277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146295" g_stop="146234" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="0.92"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="213" r_length="151" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="409" r_length="196" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143578" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="711" r_length="302" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="712" polyA_stop="725"/>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E461164" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E461164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146295" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAG</genome_strand>
        <mrna_strand>CATCTCAGTACCCCTCCAACTCTGCCGCCGCAGCTGTAACATCTTCCCGCGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAACATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCAAAAGTCTTGGAGCAACTTAGCGGCCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATCAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGTTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTTACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGATCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGGATGTTTTGGAGNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E449727" ref_strand="+" ref_description="SGN-E449727 [cSTS-7-G18]">
      <seq>acccctccaactctgctgccgcagctgtaacatcttcccgcggaagcgccatggcttcagagaagaaattgagcaaccccatgagggatatcaaggtccagaagcttgtcctcaacatctccgtcggtgagagtggagatcgactcaccagagcagcaaaagtcttggagcaacttagcggccaatcccctgttttctctaaagcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaatcaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaaatctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggatcagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattactattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146586" stop="143295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146286" g_stop="146234" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="204" r_length="151" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="400" r_length="196" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143595" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="685" r_length="285" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E449727" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E449727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146286" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAA</genome_strand>
        <mrna_strand>ACCCCTCCAACTCTGCTGCCGCAGCTGTAACATCTTCCCGCGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAACATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCAAAAGTCTTGGAGCAACTTAGCGGCCAATCCCCTGTTTTCTCTAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATCAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAATCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGATCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345961" ref_strand="+" ref_description="SGN-E345961 [cTOF-24-N12]">
      <seq>ccctctcagagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtattttttgtagacagccatcgatattactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146604" stop="143298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146304" g_stop="146234" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="222" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="418" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143598" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="701" r_length="283" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E345961" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146304" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTA-TTTTTGTAGACAGCCATCGATATTACTAT</genome_strand>
        <mrna_strand>CCCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTTGTAGACAGCCATCGATATTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348823" ref_strand="+" ref_description="SGN-E348823 [cTOF-29-J15]">
      <seq>cctctcagagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaagcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtattttttgtagacagccatcgatattacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146603" stop="143299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146303" g_stop="146234" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="220" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="416" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143599" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="698" r_length="282" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E348823" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146303" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTA-TTTTTGTAGACAGCCATCGATATTACTA</genome_strand>
        <mrna_strand>CCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAA-G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTTGTAGACAGCCATCGATATTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348270" ref_strand="+" ref_description="SGN-E348270 [cTOF-27-M22]">
      <seq>ttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatgtatttttgtagacagccatcgatattact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146581" stop="143300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146281" g_stop="146234" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="199" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="395" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143600" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="675" r_length="280" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E348270" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146281" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACT</genome_strand>
        <mrna_strand>TTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E327821" ref_strand="+" ref_description="SGN-E327821 [cTOC-20-F12]">
      <seq>cagagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaactttttggacagcttgtctcctggcaagtttatttttatgtattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146598" stop="143322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146298" g_stop="146234" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="216" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="412" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143622" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="670" r_length="258" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E327821" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146298" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTT</genome_strand>
        <mrna_strand>CAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTTGGACAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349684" ref_strand="+" ref_description="SGN-E349684 [cTOS-3-B5]">
      <seq>tggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataaagctgagtggcaacttttggaccagcttgtctcctggcaagtttatttttatgtattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146435" stop="143322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146235" g_stop="146234" g_length="2"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2" r_length="2" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="153" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="349" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143622" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="608" r_length="259" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E349684" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146235" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGAT-AAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTT</genome_strand>
        <mrna_strand>TG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAAGCTGAGTGGCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377690" ref_strand="+" ref_description="SGN-E377690 [TUS-20-E18]">
      <seq>cagagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtgccaacttttggaccagcttgtctcctggcaagtttatttttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146598" stop="143329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146298" g_stop="146234" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="216" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="412" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143629" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="663" r_length="251" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E377690" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146298" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143629"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATG</genome_strand>
        <mrna_strand>CAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E440084" ref_strand="+" ref_description="SGN-E440084 [cSTA-14-N22]">
      <seq>aactctgctgccgcagctgtaacatcttcccgcggaagcgccatggcttcagagaagaaattgagcaaccccatgagggatatcaaggtccagaagcttgtcctcaacatctccgtcggtgagagtggagatcgactcaccagagcagcaaaagtcttggagcaacttagcggccaatcccctgttttctctaaagcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaatcaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaaatctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146578" stop="143373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146278" g_stop="146234" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="196" r_length="151" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="392" r_length="196" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143673" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="599" r_length="207" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E440084" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146278" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTG</genome_strand>
        <mrna_strand>AACTCTGCTGCCGCAGCTGTAACATCTTCCCGCGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAACATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCAAAAGTCTTGGAGCAACTTAGCGGCCAATCCCCTGTTTTCTCTAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATCAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAATCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E446391" ref_strand="+" ref_description="SGN-E446391 [cSTA-21-A10]">
      <seq>ctcagtacccctccaactctgctgccgcagctgtaacatcttcccgcggaagcgccatggcttcagagaagaaattgagcaaccccatgagggatatcaaggtccagaagcttgtcctcaacatctccgtcggtgagagtggagatcgactcaccagagcagcaaaagtcttggagcaacttagcggccaatcccctgttttctctaaagcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaatcaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaaatctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaacaagtcctcaaacattcagtgataagctgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146592" stop="143374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146292" g_stop="146234" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="210" r_length="151" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="406" r_length="196" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143674" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="612" r_length="206" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E446391" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146292" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGT</genome_strand>
        <mrna_strand>CTCAGTACCCCTCCAACTCTGCTGCCGCAGCTGTAACATCTTCCCGCGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAACATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCAAAAGTCTTGGAGCAACTTAGCGGCCAATCCCCTGTTTTCTCTAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATCAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAATCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E448044" ref_strand="+" ref_description="SGN-E448044 [cSTS-1-H5]">
      <seq>tctcagtacccctccaactctgctgccgcagctgtaacatcttcccgcggaagcgccatggcttcagagaagaaattgagcaaccccatgagggatatcaaggtccagaagcttgtcctcaacatctccgtcggtgagagtggagatcgactcaccagagcagcaaaagtcttggagcaacttagcggccaatcccctgttttctctaaagcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaatcaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaaatctcgagtcgggattcagcacaggttcactaacgaggattcaatgaagtggttccaggtcaaatatgaaggtgttatccttaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146593" stop="143404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146293" g_stop="146234" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="211" r_length="151" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="407" r_length="196" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143704" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="583" r_length="176" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E448044" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146293" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACA</genome_strand>
        <mrna_strand>TCTCAGTACCCCTCCAACTCTGCTGCCGCAGCTGTAACATCTTCCCGCGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAACATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCAAAAGTCTTGGAGCAACTTAGCGGCCAATCCCCTGTTTTCTCTAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATCAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAATCTCGAGTCGGGATTCAGCACAGGTTCACTAACGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E451085" ref_strand="+" ref_description="SGN-E451085 [cSTS-11-O4]">
      <seq>gtactcttcaacactccctgctgctgcaatttcgtccagcaatggcttcagagaagaaattgagtaaccctatgagggacattaaggttcagaagcttgttctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcaaaggtcttggagcaacttagcggccaatcacctgttttctccaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctacgtgactgtcagaggggagaaagccatgcagctacttgagagtggattgaaggttaaggaatacgagttgctgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaggagcacattgatcttggaattaagtatgacccttcaactggtatttatggtatggatttctatgttgtcttggagcgtcctggataccgtgttgctcgtcgccgcaggtgcaagtctcgtgtcgggatccagcacagggtcacaaaggaagattcaatgaagtggttccaggtcaaatatgaaggtgttatcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146441" stop="143408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="195" r_length="151" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="391" r_length="196" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="143879" g_stop="143708" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="563" r_length="172" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E451085" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTT</genome_strand>
        <mrna_strand>GCTTCAGAGAAGAAATTGAGTAACCCTATGAGGGACATTAAGGTTCAGAAGCTTGTTCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCAAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTACGTGACTGTCAGAGGGGAGAAAGCCATGCAGCTACTTGAGAGTGGATTGAAGGTTAAGGAATACGAGTTGCTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAAGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E440083" ref_strand="+" ref_description="SGN-E440083 [cSTA-14-N18]">
      <seq>aactctgctgccgcagctgtaacatcttcccgcggaagcgccatggcttcagagaagaaattgagcaaccccatgagggatatcaaggtccagaagcttgtcctcaacatctccgtcggtgagagtggagatcgactcaccagagcagcaaaagtcttggagcaacttagcggccaatcccctgttttctctaaagcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaatcaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaaatctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtcaaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146578" stop="143422"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146278" g_stop="146234" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="196" r_length="151" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="392" r_length="196" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143722" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="550" r_length="158" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E440083" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146278" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATG</genome_strand>
        <mrna_strand>AACTCTGCTGCCGCAGCTGTAACATCTTCCCGCGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAACATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCAAAAGTCTTGGAGCAACTTAGCGGCCAATCCCCTGTTTTCTCTAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATCAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAATCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336522" ref_strand="+" ref_description="SGN-E336522 [cTOE-4-L4]">
      <seq>tctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacaaggtcactaaggaggattcaatgaagtggttccaggtcaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146575" stop="143423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146275" g_stop="146234" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="193" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="389" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143723" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="546" r_length="157" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E336522" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146275" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATAT</genome_strand>
        <mrna_strand>TCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAAGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E233110" ref_strand="+" ref_description="SGN-E233110 [cLED-6-J24]">
      <seq>cagagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatgaagtggttccaggtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146598" stop="143428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146298" g_stop="146234" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="216" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="412" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143728" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="564" r_length="152" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E233110" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146298" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCA</genome_strand>
        <mrna_strand>CAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E442183" ref_strand="+" ref_description="SGN-E442183 [cSTA-32-A24]">
      <seq>ctcttcaacactccctgctgctgcaatttcgtccagcaatggcttcagagaagaaattgagtaaccctatgagggacattaaggttcagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcaaaggtcttggagcaacttagcggccaatcacctgttttctccaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctacgtgactgtcagaggggagaaagccatgcagctacttgagagtggattgaaggttaaggaatacgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaggagcatattgatcttggaattaagtatgacccttcaactggaatttatggtatggatttctatgttgtcttggagcgtcctggataccgtgttgctcgtcgccgcaggtgcaagtctcgtgtcgggatccagcacagggtcacaaaggaagattcaatgaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146441" stop="143439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="192" r_length="151" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="388" r_length="196" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="143879" g_stop="143739" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="529" r_length="141" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E442183" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTG</genome_strand>
        <mrna_strand>GCTTCAGAGAAGAAATTGAGTAACCCTATGAGGGACATTAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCAAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTACGTGACTGTCAGAGGGGAGAAAGCCATGCAGCTACTTGAGAGTGGATTGAAGGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCATATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGAATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATCCAGCACAGGGTCACAAAGGAAGATTCAATGAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202964" ref_strand="+" ref_description="SGN-E202964 [cLEB-1-K7]">
      <seq>gcacgagcagagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcactaaggaggattcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146598" stop="143444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146305" g_stop="146234" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="223" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="419" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143744" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="555" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E202964" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146305" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATG</genome_strand>
        <mrna_strand>GCACGAGCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231945" ref_strand="+" ref_description="SGN-E231945 [cLED-7-N22]">
      <seq>cagagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146598" stop="143459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146298" g_stop="146234" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="216" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="412" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143759" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="533" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E231945" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146298" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACT</genome_strand>
        <mrna_strand>CAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307533" ref_strand="+" ref_description="SGN-E307533 [cLEY-24-N17]">
      <seq>agagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146597" stop="143459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146297" g_stop="146234" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="215" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="411" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143759" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="532" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E307533" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146297" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACT</genome_strand>
        <mrna_strand>AGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337783" ref_strand="+" ref_description="SGN-E337783 [cTOE-17-L23]">
      <seq>cctctcagagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146603" stop="143460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146303" g_stop="146234" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="221" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="417" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143760" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="537" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E337783" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146303" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCAC</genome_strand>
        <mrna_strand>CCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306331" ref_strand="+" ref_description="SGN-E306331 [cLEX-13-K22]">
      <seq>gcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcacagggtcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146566" stop="143460"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146266" g_stop="146234" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="184" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="380" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143760" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="500" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E306331" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146266" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCAC</genome_strand>
        <mrna_strand>GCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298651" ref_strand="+" ref_description="SGN-E298651 [cLET-44-G6]">
      <seq>ttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgcaagtctcgagtcgggattcagcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146581" stop="143467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146281" g_stop="146234" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="199" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="395" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143767" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="508" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E298651" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146281" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACA</genome_strand>
        <mrna_strand>TTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337412" ref_strand="+" ref_description="SGN-E337412 [cTOE-18-K14]">
      <seq>ttcaactcacttgctgctgctgctgcaatttcgtccagcaatggcttcagagaagaaattgagcaaccccatgagggacatcaaggttcagaagcttgtcctcaatatctccgtcggtgagagtggagatcggcttacaagagcagcaaaggtcttggagcaacttagcggccaatcacctgttttctccaaagcaaggtatactgtgcggtcctttggtatcaggcgtaatgaaaaaatagcttgctacgtgactgtcagaggtgagaaagctatgcagctgcttgagagtggactgaaagttaaggaatatgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaggagcacattgatcttggaattaagtatgacccttcaactggtatttatggtatggatttctatgttgtcttggagcgtcctggataccgtgttgctcgtcgccgcaggtgcaagtctcgtgtcgggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146441" stop="143475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="194" r_length="151" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="0.86"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="390" r_length="196" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="143879" g_stop="143774" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="496" r_length="106" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E337412" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATT</genome_strand>
        <mrna_strand>GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284175" ref_strand="+" ref_description="SGN-E284175 [cLER-16-C15]">
      <seq>caatttcgtccagcaatggcttcagagaagaaattgagcaaccccatgagggacatcaaggttcagaagcttgtcctcaatatctccgtcggtgagagtggagatcggcttacaagagcagcaaaggtcttggagcaacttagcggccaatcacctgttttctccaaagcaaggtatactgtgcggtcctttggtatcaggcgtaatgaaaaaatagcttgctacgtgactgtcagaggtgagaaagctatgcagctgcttgagagtggactgaaagttaaggaatatgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaggagcacattgatcttggaattaagtatgacccttcaactggtatttatggtatggatttctatgttgtcttggagcgtcctggataccgtgttgctcgtcgccgcaggtgcaagtctcgtgtcgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146441" stop="143475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="169" r_length="151" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="0.86"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="365" r_length="196" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="143879" g_stop="143775" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="470" r_length="105" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E284175" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGAT</genome_strand>
        <mrna_strand>GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGTGTCGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E446804" ref_strand="+" ref_description="SGN-E446804 [cSTA-23-E5]">
      <seq>cttcaacactccctgctgctgcaatttcgtccagcaatggcttcagagaagaaattgagtaaccctatgagggacattaaggttcagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcaaaggtcttggagcaacttagcggccaatcacctgttttctccaaggcaaggtatactgtgcggtcctttggtatcaggcgtaatgaaaagatagcttgctacgtgactgtcagaggggagaaagccatgcagctacttgagagtggattgaaggttaaggaatacgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaggagcacattgatcttggaattaagtatgacccttcaactggtatttatggtatggatttctatgttgtcttggagcgtcctggataccgtgttgctcgtcgccgcaggtgcaagtctcgcgtcgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146441" stop="143475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="190" r_length="151" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="386" r_length="196" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="143879" g_stop="143775" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="491" r_length="105" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E446804" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGAT</genome_strand>
        <mrna_strand>GCTTCAGAGAAGAAATTGAGTAACCCTATGAGGGACATTAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCAAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAGATAGCTTGCTACGTGACTGTCAGAGGGGAGAAAGCCATGCAGCTACTTGAGAGTGGATTGAAGGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAGGTGCAAGTCTCGCGTCGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338371" ref_strand="+" ref_description="SGN-E338371 [cTOE-13-P14]">
      <seq>caaccccatgagggacatcaaggttcagaagcttgtcctcaatatctccgtcggtgagagtggagatcggcttacaagagcagcaaaggtcttggagcaacttatcggccaatcacctgttttctccaaagcaaggtatactgtgcggtcctttggtatcaggcgtaatgaaaaaatagcttgctacgtgactgtcagaggtgagaaagctatgcagctgcttgagagtggactgaaagttaaggaatatgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaggagcacattgatcttggaattaagtatgacccttcaactggtatttatggtatggatttctatgttgtcttggagcgtcctggataccgtgttgctcgtcgccgcaagtgcaagtctcgtgtcgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146414" stop="143475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146114" g_stop="145984" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="0.84"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="327" r_length="196" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="143879" g_stop="143775" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="432" r_length="105" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E338371" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146114" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGAT</genome_strand>
        <mrna_strand>CAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTCTTGGAGCAACTTATCGGCCAATCACCTGTTTTCTCCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGCTCGTCGCCGCAAGTGCAAGTCTCGTGTCGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351383" ref_strand="+" ref_description="SGN-E351383 [cTOS-12-I22]">
      <seq>tggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttngccgtcgtcgcaggtgcaagtctcgagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146435" stop="143480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146235" g_stop="146234" g_length="2"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2" r_length="2" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="153" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="349" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143780" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="449" r_length="100" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E351383" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146235" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTC</genome_strand>
        <mrna_strand>TG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTNGCCGTCGTCGCAGGTGCAAGTCTCGAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E600497" ref_strand="+" ref_description="SGN-E600497 [53509]">
      <seq>agcggccaatcccctgttttctctaaagcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaatcaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcgtcgcaggtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146311" stop="143492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146011" g_stop="145984" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="224" r_length="196" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="143879" g_stop="143792" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="312" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E600497" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E600497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146011" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGC</genome_strand>
        <mrna_strand>AGCGGCCAATCCCCTGTTTTCTCTAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATCAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E471270" ref_strand="+" ref_description="SGN-E471270 [cSTB-23-K24]">
      <seq>gcttccccatgagggatatcaaggtccagaagcttgtcctcaacatctccggcggtgagagtggagatcgactcaccagagcagcaaaagtcttggagcaacttagcggccaatcccctgttttctctaaagcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaataccagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaatcaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgcccgtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146410" stop="143502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146115" g_stop="145984" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="328" r_length="196" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="143879" g_stop="143802" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="406" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E471270" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E471270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146115" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCG</genome_strand>
        <mrna_strand>GCTTCCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAACATCTCCGGCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCAAAAGTCTTGGAGCAACTTAGCGGCCAATCCCCTGTTTTCTCTAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACCAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATCAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E559692" ref_strand="+" ref_description="SGN-E559692 [19230]">
      <seq>catctcagtaccctccaactctgctgacgcagctgtaacatcttcccgcggaagcgccgatggcttcagagaagaaattgagcgaacccatgagggatatcaaggtccagaagcttgtcctcaacatctccgtcggtgagagtggagatcgactcaccagagcagcaaaacgtcttggagcaacttagcggccaatcccctgttttctctaaagcaaggtatactagtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtagactgtcagaggggagaaagctatgcacgcttcttgagagtggattgaaagttaaggaatacgagttgttcgagaaggaacttcagtgagaccggctgctcttgggtttggtatatcaggagcacattgatcgttggaatcacaatatgatccttcaagtggtatttatggaatggagtttctatagttagtattggagacgccctggctaccgtgttgcccggtcgatcagcagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146435" stop="143492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146295" g_stop="146234" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.855"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="0.88"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="214" r_length="152" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="418" r_length="204" r_score="0.913"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="0.80"/>
            <acceptor a_prob="0.958" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143806" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="496" r_length="78" r_score="0.878"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E559692" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146295" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCC-ATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAA-GTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACT-GTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGT-GACTGTCAGAGGGGAGAAAGCTATGCA-GCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTT-GAGAAGGAACTTCAGTGAGACCGGCTGCT-TTGGGTTTGGTAT-TCAGGAGCACATTGATC-TTGGAATTA-AGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGA-TTTCTAT-GTT-GTATTGGAG-CGCCCTGGCTACCGTGTTGCCC</genome_strand>
        <mrna_strand>CATCTCAGTAC-CCTCCAACTCTGCTGACGCAGCTGTAACATCTTCCCGCGGAAGCGCCGATG...................................................................................................GCTTCAGAGAAGAAATTGAGCGAACCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAACATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCAAAACGTCTTGGAGCAACTTAGCGGCCAATCCCCTGTTTTCTCTAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTAGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTAGACTGTCAGAGGGGAGAAAGCTATGCACGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTCGAGAAGGAACTTCAGTGAGACCGGCTGCTCTTGGGTTTGGTATATCAGGAGCACATTGATCGTTGGAATCACA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAAGTGGTATTTATGGAATGGAGTTTCTATAGTTAGTATTGGAGACGCCCTGGCTACCGTGTTGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205237" ref_strand="+" ref_description="SGN-E205237 [cLEC-25-B1]">
      <seq>agagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccgtgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146597" stop="143508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146297" g_stop="146234" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="215" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="411" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143808" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="483" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E205237" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146297" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGC</genome_strand>
        <mrna_strand>AGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E312173" ref_strand="+" ref_description="SGN-E312173 [cTOA-11-B5]">
      <seq>ttcaactcacttgctgctgctgctgcaatttcgtccagcaatggcttcagagaagaaattgagcaaccccatgagggacattaaagatgagaaacttgtcctcaatatcttcgtcggtgagagtggagatcggcttacaagagcaacaaaggtcttggagcaacttatcggccaatcacctgttttctccaaagcaaggtatactgtgcggtcctttggtatcaggcgtaatgaaaaaatagcttgctacgtgactgtcagaggtgagaaagctatgcagctgcttgagagtggactgaaagttaaggaatatgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaagagcacattgatcttggaattaagtatgacccttcaactggtatttatggtatggatttctatgttgtcttggagcgtcctggataccgtgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146441" stop="143508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="194" r_length="151" r_score="0.861"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="0.82"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="390" r_length="196" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="143879" g_stop="143808" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="462" r_length="72" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E312173" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGC</genome_strand>
        <mrna_strand>GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATTAAAGATGAGAAACTTGTCCTCAATATCTTCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAACAAAGGTCTTGGAGCAACTTATCGGCCAATCACCTGTTTTCTCCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGTATCAGGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAAGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATACCGTGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232128" ref_strand="+" ref_description="SGN-E232128 [cLED-7-P16]">
      <seq>cagagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggccctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctatgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatatctatgttgtattggagcgccctggctaccgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146598" stop="143512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146298" g_stop="146234" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="216" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="412" r_length="196" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143812" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="480" r_length="68" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E232128" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146298" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTG</genome_strand>
        <mrna_strand>CAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGCCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTATGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATATCTATGTTGTATTGGAGCGCCCTGGCTACCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E227008" ref_strand="+" ref_description="SGN-E227008 [cLED-1-F4]">
      <seq>agagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatnccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctggctaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146597" stop="143514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146297" g_stop="146234" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="215" r_length="151" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="411" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143814" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="477" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E227008" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146297" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCG</genome_strand>
        <mrna_strand>AGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATNCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E316646" ref_strand="+" ref_description="SGN-E316646 [cTOB-7-N13]">
      <seq>ttcaactcacttgctgctgctgctgcaatttcgtccagcaatggcttcagagaagaaattgagcaaccccatgagggacatcaaggttcagaagcttgtcctcaatatctccgtcggtgagagtggagatcggcttacaagagcagcaaaggtcttggagcaacttagcggccaatcacctgttttctccaaagcaaggtatactgtgcggtcctttggtatcaagcgtaatgaaaaaatagcttgctacgtgactgtcagaggtgagaaagctatgcagctgcttgagagtggactgaaagttaaggaatatgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaggagcacattgatcttggaattaagtatgacccttcaactggtatttatggtatggatttctatgttgtcttggagcgtcctggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146441" stop="143517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="194" r_length="151" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="0.86"/>
            <acceptor a_prob="0.978" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="390" r_length="196" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="143879" g_stop="143817" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="453" r_length="63" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E316646" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTA</genome_strand>
        <mrna_strand>GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGACATCAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGGCTTACAAGAGCAGCAAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGTATCAAGCGTAATGAAAAAATAGCTTGCTACGTGACTGTCAGAGGTGAGAAAGCTATGCAGCTGCTTGAGAGTGGACTGAAAGTTAAGGAATATGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................GTATGACCCTTCAACTGGTATTTATGGTATGGATTTCTATGTTGTCTTGGAGCGTCCTGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E439797" ref_strand="+" ref_description="SGN-E439797 [cSTA-13-H19]">
      <seq>ctcagtacccctccaactctgctgccgcagctgtaacatcttcccgcggaagcgccatggcttcagagaagaaattgagcaaccccatgagggatatcaaggtccagaagcttgtcctcaacatctccgtcggtgagagtggagatcgactcaccagagcagcaaaagtcttggagcaacttagcggccaatcccctgttttctctaaagcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaggagcacattgatcttggaatcaaatatgatccttcaactggtatttatggaatggatttctatgttgtattggagcgccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146592" stop="143521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146292" g_stop="146234" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="210" r_length="151" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="406" r_length="196" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143821" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="465" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E439797" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146292" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTG</genome_strand>
        <mrna_strand>CTCAGTACCCCTCCAACTCTGCTGCCGCAGCTGTAACATCTTCCCGCGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAACATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCAAAAGTCTTGGAGCAACTTAGCGGCCAATCCCCTGTTTTCTCTAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATCAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E312661" ref_strand="+" ref_description="SGN-E312661 [cLEZ-20-J20]">
      <seq>agagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagaatcgactcaccagagcagcgaaagtcttggagcaactcagcggtcaatcccctgttttctctaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagaatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacgagttgttgagaaggaacttcagtgagaccggctgctttgggtttggtattcaagagcacattgatcttggaattaaatatgatccttcaactggtatttatggaatggatttctatgttgtattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146597" stop="143530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146297" g_stop="146234" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="217" r_length="153" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="414" r_length="197" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="143879" g_stop="143830" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="464" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E312661" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312661" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146297" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
          <exon e_start="143879" e_stop="143830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAG-AAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAG-ATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAG-ATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAAGTAAGCAGATAATCGTTTAGATGTCTTTCTGGTTTATAGCTTTCACGACTTAAATAATTAGCTATGTTGTATAGGAGGTAACCTGGATCTAGTCTTCCTTTCTTCTTACAAAAAAAAGAAAATCGCATTAGCTATTTCATTAATACCCATATAACTTGGACGTAGTTTAAGGAAACATGATTTACTTTTTTCATATTGTTTCTTGGATCTATCTTATGGTTGCCGTGTCTTACTATATTAACCTCGAAAGATTTGCATCTGCTATTTTGATATAAAATTTCAATCTATTAATGTCTGTCATCCTATGTTTTGTTAAAAAATTTCAGATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGG</genome_strand>
        <mrna_strand>AGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGAATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGAATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAAGAGCACATTGATCTTGGAATTAA......................................................................................................................................................................................................................................................................................................................................ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E473730" ref_strand="+" ref_description="SGN-E473730 [cSTB-33-F1]">
      <seq>caatttcgtccagcaatggcttcagagaagaaattgagtaaccctatgagggacattaaggttcagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcaaaggtcttggagcaacttagcggccaatcacctgttttctccaaggcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctacgtgactgtcagaggggagaaagccatgcagctacttgagagtggattgaaggttaaggaatacgagttgttgagaaggaacttcagtgaaaccggctgctttgggtttggtattcaagagcatattgatcttggaattaagtatgacccttcaactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146441" stop="143901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="169" r_length="151" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="144401" g_stop="144206" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="365" r_length="196" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E473730" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA</genome_strand>
        <mrna_strand>GCTTCAGAGAAGAAATTGAGTAACCCTATGAGGGACATTAAGGTTCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCAAAGGTCTTGGAGCAACTTAGCGGCCAATCACCTGTTTTCTCCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTACGTGACTGTCAGAGGGGAGAAAGCCATGCAGCTACTTGAGAGTGGATTGAAGGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAAACCGGCTGCTTTGGGTTTGGTATTCAAGAGCATATTGATCTTGGAATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E443875" ref_strand="+" ref_description="SGN-E443875 [cSTA-40-D5]">
      <seq>cgggctgcaggaattcggcacgaggcagtacccctccaactctgctgccgggggtgtaacatcttcccgcggaagcgccatggcttcagagaagaaattgagcaaccccatgagggatatcaaggtccagaagcttgtcctcaacatctccgtcggtgagagtggagatcgactcaccagagcagcaaaagtcttggagcaacttagcggccaatcccctgttttctctaaagcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagttaaggaatacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146437" stop="143981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146287" g_stop="146234" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="82" r_length="54" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="0.88"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="233" r_length="151" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144281" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="354" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E443875" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146287" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGA</genome_strand>
        <mrna_strand>TACCCCTCCAACTCTGCTGCCGGGGGTGTAACATCTTCCCGCGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAACATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCAAAAGTCTTGGAGCAACTTAGCGGCCAATCCCCTGTTTTCTCTAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E443874" ref_strand="+" ref_description="SGN-E443874 [cSTA-40-D3]">
      <seq>cgggctgcaggaattcggcacgaggcagtacccctccaactctgctgccgcagctgtaacatcttcccgcggaagcgccatggcttcagagaagaaattgagcaaccccatgagggatatcaaggtccagaagcttgtcctcaacatctccgtcggtgagagtggagatcgactcaccagagcagcaaaagtcttggagcaacttagcggccaatcccctgttttctctaaagcaaggtatactgtgcggtcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatgcagcttcttgagagtggattgaaagtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146590" stop="143991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146287" g_stop="146234" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="82" r_length="54" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="0.94"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="145984" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="233" r_length="151" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="144401" g_stop="144291" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="344" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E443874" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146287" e_stop="146234"/>
          <exon e_start="146134" e_stop="145984"/>
          <exon e_start="144401" e_stop="144291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTA</genome_strand>
        <mrna_strand>TACCCCTCCAACTCTGCTGCCGCAGCTGTAACATCTTCCCGCGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAACCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAACATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCAAAAGTCTTGGAGCAACTTAGCGGCCAATCCCCTGTTTTCTCTAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E443877" ref_strand="+" ref_description="SGN-E443877 [cSTA-40-D15]">
      <seq>attgagcaaccccgtgagggatatcaaggtccagaagcttgtcctcaacatctccgtcggtgagagtggagatcgactcaccacagcagcaaaagtcttggagcaacttaacggccgatcccctgatttctctaaagcaaggtatactgcgcgggcctttggaatcaggcgtaatgaaaagatagcttgctatgtgactgtcagaggggagaaagctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146420" stop="144019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146120" g_stop="145984" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582">
            <donor d_prob="0.999" d_score="0.86"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="144401" g_stop="144319" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="220" r_length="83" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E443877" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>220</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146120" e_stop="145984"/>
          <exon e_start="144401" e_stop="144319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGGGTAACTTTTTGAATCTTCTAATTCTTTTCCATTTAAGTACATTAATTATGTGGTCTGGGAAATATTAGCTTTCTACCATGAACATTTATCTAATGTGTGAATTGACACTTATGTATACCTTCAAGCTGTTCCTTGTAATCCAGTGTCGAATCTTGGATATCTGTAACATGGGTGCACCACTAAAAAAACCAAAGAAAAAGAAATTGATCCCTAATCTACTAATTAAATATCTCAACCTTTAACCAAGTGCACCATTTGGTATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTTAACCTTTAACCAAGTGCACCATTTGATATCCTTCCTTGTAGCATGGTTACCTGTATATAATATATTAAATATCTCAACCTTTAACCATGTGCTCCATTTGGTATCCTTCCTCGTAGCATGGTTACCTGTGTATAATATTATTCAAGTTTTAGCAATATATACCTAAAATACTTAGTTTTATGGATGGAGAGAGACCAAAGGCTCACGTGCCTCAAATTTTGCCTATGGTGATTGTTTTACTTATTTTGTCTGCTAGTTTTTTTCTAGTTTATCATTGATTTTTAATCAGTTGAAGTTAAAATATCAGCCTGAATAGAATGTAAAGATGCAAAAATCATGTAGCCTAACCTTTTTTTTTTTGGGTTGCATTGGAGCCTAGCCGATTGCTTGATAATGGCGGTGTAAATGTTTAGTCATGGAATTAATCCATGCTTAATTTGATCTATATGCATTCAAGCTGTTTCTCGCAGTGTCAAATCTAGACTTTCTATAATATGGGCCCATGGAGATTTATCCCTAATCCTCTAGTTAAATAACTCAACCTTCAACTAAATGCACCTTAGTCTCCTTGTAGCATGGGTGCCCTGATGCAATATTATACGAATTTAGACAGTTTATACACAAAATGCCTAGTTTTACAGAGACACCACAGGTTCACTTGCTCAATTGTTGACTATAAATTTACCCCTAGTTCTTTTTAGTGTGATTGTTTAACGAATTGTGTCAGTTTTTTAGCTTGTCATTGATTTTTATCCATCACAGTTTAAATATCACCCTCAATAGAAAGGAAGGATGCAAAAATTCATTCAGCCTAACCCTTCTTTTTTGCCTTGGAGCCTAGTTGATTGCTTGATAATGGCAGTGTAAATGTCAAGTCATGGGATTAATCCATGGTTAATTCAATATGTATGCATGTTGATGAAGCTTCCTTTTGTAATTAATGAAGGTACTAGCTTATTTGGTTCATATTCTTGTATTATACTGGGTATATAATTTTTAGCTTTTAGACATGCTAATCTTTGTGGTAGATGTTGGTTGAAGTTGGTGTTTATCTCAATTCATTAGTGTTTATGAAAAACACGCCATTCACGAGTTCTGTGAACTAGTGTCCTGCTTTTGTTCATTCATTGATATGAGAAACCTAGCTGATGAAACTTTAAGTTATTTGTTTTGTAGTGTTTGTCTGTGGACATTTAACAGATGTTATATGTATCTCAGCTTACCCTCTTTAATTTTTTGATCTCTCATGTTATTGTTATGGTTCTCATTATCAGCAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATG</genome_strand>
        <mrna_strand>ATTGAGCAACCCCGTGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAACATCTCCGTCGGTGAGAGTGGAGATCGACTCACCACAGCAGCAAAAGTCTTGGAGCAACTTAACGGCCGATCCCCTGATTTCTCTAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGTATACTGCGCGGGCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339180" ref_strand="+" ref_description="SGN-E339180 [cTOF-6-F2]">
      <seq>agagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgaggggatatcaaggtccagaagcttgtcctcaatatctccgtcggtgagagtggagatcgactcaccagagcagcgaaagtcttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146597" stop="145719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146297" g_stop="146234" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="146019" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="181" r_length="117" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E339180" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>180</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146297" e_stop="146234"/>
          <exon e_start="146134" e_stop="146019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGA-GGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGA</genome_strand>
        <mrna_strand>AGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339101" ref_strand="+" ref_description="SGN-E339101 [cTOF-6-O21]">
      <seq>ccctctcagagtctcagtaccccttcaactctgctgccgcagctgaaacatcttcccgtggaagcgccatggcttcagagaagaaattgagcaatcccatgagggatatcaaggtccagaagcttgtcctcaatatctncgtcggtgagagtggagatcgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="146604" stop="145743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146304" g_stop="146234" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146134" g_stop="146043" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="163" r_length="92" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E339101" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>163</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146304" e_stop="146234"/>
          <exon e_start="146134" e_stop="146043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATGGTATCTCTCACCGATTTTCGTTTTCATGAGTGTTGATGCTTTATCATATGTATTCGCCTTTAACTTGAAATATGATTTTTGATTGTGCAATGAGAACAGGCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACT</genome_strand>
        <mrna_strand>CCCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG...................................................................................................GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTNCGTCGGTGAGAGTGGAGATCGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E312768" ref_strand="+" ref_description="SGN-E312768 [cTOA-8-N11]">
      <seq>aaactggcaaagagagctttttgaaattttctttctcattctcttgctagatagcgggtcagggggctattgatttcgttcgttgtttttaggtatttactctttcagttatgcattgttttttgtgtgcaaatcggtgattctgtattttttttatatgttcatgtgcattgatcatttcctttcaaacagcgatttcataagcatttgatatctgagaagtataaattctgtcatttttgttcgaaaagttgttcagatttcaggtgtgaactgttttgagtagatgcggagaatcaaagataaattatcaacaaggttaatgaatgtttgtgtggcatctctttgtaaagccaaacaattagagaaagctgaaattgttatagttgatggcatacgaattggattgcaaccagatgttgtcacttacaatacattgattgctgcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="148180" stop="149228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="148480" g_stop="148928" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E312768" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="148480" e_stop="148928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTGGCAAAGAGAGCTTTTTGAAATTTTCTTTCTCATTCTCTTGCTAGATAGCGGGTCA-AAGGCTATTGATTTCGTTCGTTGTTTTTAGGTATTTACTCTTTCAGTTATGCATTGTTTTTTGTGTGCAAATCGGTGATTCTGTATTTTTTTTATATGTTCATGTGCATTGATCATTTCCTTTCAAACAGCGATTTCATAAGCATTTGATATCTGAGAAGTATAAATTCTGTCATTTTTGTTCGAAAAGTTGTTCAGATTTCAGGTGTGAACTGTTTTGAGTAGATGCGGAGAATCAAAGATAAATTATCAACAAGGTTAATGAATGTTTGTGTGGCATCTCTTTGTAAAGCCAAACAATTAGAGAAAGCTGAAATTGTTATAGTTGATGGCATACGAATTGGATTGCAACCAGATGTTGTCACTTACAATACATTGATTGCTGCATA</genome_strand>
        <mrna_strand>AAACTGGCAAAGAGAGCTTTTTGAAATTTTCTTTCTCATTCTCTTGCTAGATAGCGGGTCAGGGGGCTATTGATTTCGTTCGTTGTTTTTAGGTATTTACTCTTTCAGTTATGCATTGTTTTTTGTGTGCAAATCGGTGATTCTGTATTTTTTTTATATGTTCATGTGCATTGATCATTTCCTTTCAAACAGCGATTTCATAAGCATTTGATATCTGAGAAGTATAAATTCTGTCATTTTTGTTCGAAAAGTTGTTCAGATTTCAGGTGTGAACTGTTTTGAGTAGATGCGGAGAATCAAAGATAAATTATCAACAAGGTTAATGAATGTTTGTGTGGCATCTCTTTGTAAAGCCAAACAATTAGAGAAAGCTGAAATTGTTATAGTTGATGGCATACGAATTGGATTGCAACCAGATGTTGTCACTTACAATACATTGATTGCTGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735984" ref_strand="+" ref_description="SGN-E735984 [LC03DG02]">
      <seq>caccgcttctaccttttattaatcgcaacgtgttccttagtttccacccccacccgcctcgtcttggactaacgcgccgccctgaagaagaagataagggaaaagggggctgctttatgattggtgcagtaacgataagttactgtagataatgggaggagtgacttcttccatcgctgctaagttcgccttcttcccaccgactccgccgtcttacacggttgtccccgacgacggcaagtttagcatacctgaggtagctaggagagatggagtagactttttgaaacttcgtactcgccgtggaaatgaaatcgtggccgttcatgtgaagcatccaaaggcatctgctactatgctgtattctcatggtaatgctgctgatttgggtcagatgtttgagctctttgttgaattgagcctccgtcttcgtgttaatctcatggggtatgattactctggatatggacaatcaactggaaagccatctgaatgtaatacatacgcggacattgatgcagtatataaatgcttaaaggagcaatatgaggtcaaagatgaacagttaataatctatggtcaatctgttggcagtggcccaactgttgatcttgcatcacgagtacccaatttacgaggtgttgttttacatagtccaatattgtctgggtgtaagagttttgtaccctgtcaagcggacatattggtttgacctatacaagaacattgacaagattagtgcagtgaattgtccggttctcgtcattcatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="154012" stop="159237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="154240" g_stop="154687" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="154688" i_stop="155759" i_length="1072">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.507" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155760" g_stop="155796" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="484" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155797" i_stop="158563" i_length="2767">
            <donor d_prob="0.930" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="158564" g_stop="158800" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="722" r_length="238" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="158801" i_stop="158886" i_length="86">
            <donor d_prob="0.954" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="158887" g_stop="158934" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="770" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E735984" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="154240" e_stop="154687"/>
          <exon e_start="155760" e_stop="155796"/>
          <exon e_start="158564" e_stop="158800"/>
          <exon e_start="158887" e_stop="158934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCCAACAACCTTTTATTAGTCGTAGCATATTCCTTATTTTCAAACCCCCACGCGCCTC-TCTTGGCCTCCACGCGCCGCCCTGAAGAAGAAGATAAGGGAAAAGGGGGCTGCTTTATGATTGGTGCAGTAACGATAAGTTACTGTAGATAATGGGAGGAGTGACTTCTTCCATCGCTGCTAAGTTCGCCTTCTTCCCACCGACTCCGCCGTCTTACACGGTTGTCCCCGACGACGGCAAGTTTAGCATACCTGAGGTAGCTAGGAGAGATGGAGTAGACTTTTTGAAACTTCGTACTCGCCGTGGAAATGAAATCGTGGCCGTTCATGTGAAGCATCCAAAGGCATCTGCTACTATGCTGTATTCTCATGGTAATGCTGCTGATTTGGGTCAGATGTTTGAGCTCTTTGTTGAATTGAGCCTCCGTCTTCGTGTTAATCTCATGGGGTAATTTAATTAAGCTTCCCTTTTAATTTCCACAATTTTATTTCCTAGTTTCTCAATTTTGTTTCCGTTATCTGATTCTGAGCTAAAGCTTATCTTTTTTTTTTCTCTTAAGTCCTAATTCTGTTTTAATTTTTTTTTTTGTTCTTTTTCTTGAATCTAGCAATTGGAAAGACACCTTATGCAGTAATTGAGATTTTGTAACTTTCATATTTGGATCACTTTTTTTTTTCTTGAATAAGAGCAAAGGTTGGAAGTAAAATACTTAAACATTTTTTTGGCCAAGACATTTAGTTGAGCAGAAATAAGACATCTTTAGTAGAACATACTCCAAATTGAGAATTTTGTTGAGATTTTACAAAAGTTTGAAGTTGTTTGCTTTAATTTATTGGGCATGACACAGTCTAATGTGTTTCTGAAACATGACTTACTTTATGCTGTATGTTTTGATTCTCCGGTAAGGTGATAAGCTGTTTTTACTCCGTGTCATGACTTCCCTAGCTTTAAGAATTCTTTTTGAGATTTTACGAAATTGGAGAAAATTTGAGGTTGTTTGTTTTAAACTGTACTGCGTTACACACCGTGCTAATTTTCTGAAATGCGACTAACATTAGGCTATTTATACGGACTCTCCTATAATGTGGAGATGTCATGAAATTGTTATTTTTGTGCTGTATTTTCCTAACATTGATGCTATGGTTGATACATGATTACTAGTGGATAATAATTTGATGAACAAGTAGACGTTAGAAGAAAGCCAAGCTTGAGGTCCAGGAGTCCAATTCAAGCAAGCAGCTTGTTTGGCTTTACTAGTTTACTCTATACTAGATTTTAGTAACTCGTGATCATTTCCTATCTTCTGTGCAATTTGACCTATTGCGAGTTGCATCTGAAAGACCCCCGATGAAGTTAATATTATGGTTGAACCCTCTGGTCTCTCTGTCTTTCTCTAGTTTCGTAAATTGAGCTTTCATTTGCTTCAATTCTAGAACTTTTTTAATGTCAAACTAAACAGTAGGATTGCCGTTTGATTTCTCAGACCCTCCTGACGTTGCTCATATGGTTTCTTGTTTAGGTATGATTACTCTGGATATGGACAATCAACTGGAAAGGTTAGATACCTGCTTCCTTGGTCATATATACTTGGCAACTTTTTGTTCCCCGTCTTCATAAAGAAAACAGGGACAAAGAGAAAAACCTCACTGCCTTCATCAGTTTCAGTTTGTTACGTGTATAATAACATTATTAGTAGGAAGAAAAATGACATCTGTTTTGAAAACTGGCTTTATTAACCAGCTCTAACTTGCAATGATACTTGTTAATAGACGAATGTGATGGTAGAACTTTAAATTTTACCTTTTTGGACTTGCATTAAAATTTCGGAATATTAAAAGTAAATGTTGCTTAGATATGGTAGAATCCAGGTGTCAACGTCCTCATCCCTGAGCTATATAATTGTTATATTTGTTTTGATTTATATGTGGGCATATCATATTTATGAAATTCTTATGCAACCTTCATGTAAAAATTGAAGGTTTCTTTCTTAAAATGTTCGTTTGCTCATTTTTGGTAGATTTCTTATTTATTGAAAGAAAAAAAAACATTTTCTCTAGATTTCTTACATGGAAGTTTAGTATAAAGACCATGGATGATGTCAATGTTATATCACCTCTCCTTCAGGCCTCGTATTAATCATTTAACGCCACTTGTCACCCATGTTGCTATATGGTCTTAAACTCCCAACTCCTAAGATTCTCTGAAGCAAAATTTGATGTCAGAGAACAGATATCTTATCCTCTGTAATCGCTCCAGTAATTTGTCACTCCAAATTTGGACAACGATATATAATGCCAAGGGAAATTAATCTCTTAACTGATGCTAATAATGCAAAAGAACCATTTCCAAACGATAAGTTTGGATGTTACTTGTACTCTATTATTACAGATGGTTTTTCATCTATTTTACAACATCAACAAGTCAATTTAATATGGATATCACTTGGGTGATTATGTGATGCGCGAATAAACATAAAGACTGGTATTCTTTTTTGCTCACTTGCAAACATACAAGGACAAGGCAGCTAATACTAAACCAATAAGTGAAGTAGTCGTCGTCTGACCAATCGGCTCAGACACGGGACTTCCCCTACCAGCTATTTTGTCTTGCCCAAAATGGATTGGCTCTCTTAGTTAAGTTGCCCCCCAAACCTGTGGGCTGTGTGTCCAGCTCCGCCTTTATCCTCTGTACCTTCTTTTTGTTTTTGCGTCTGGGGTAGGAATATGTCGTATAATTTGAAAGCATTATTTGCAAGAACACACTAACATTGATTATTTTAAGGTAGCATTGATTACTCGGCAGATATTATAGAACACATCTAATCTGTTTCATTACCACCGCATATGTTACCTAACCTTCAGCTTAGTTTCTCCTTTCTCATTAGAACCACAACTAGAAGCACTAGCTAACCAAACTAGTTCACGTAGTTGGTTCTGTCAAATTATCTGAACCCTGCAATGCACTTTTTGGACTTAATTGCTTATTTTTGTTGTCTTATAATAGTAAGTTTTTTCGTTCCTAGGAAGGAATGCCAAGGTGTAGTATTGGCAATGGGCTTGTGTTTAGTCATAAATTCTCTATAACCCTGACCGGTAACCGGTCTAAGAACAGGAGCTGTTTGTCAATGAACTCTTAAAAGCTTTAACGTTCATTTTTAAATTCTCAAGGAAGAGCTTGCTTGCCTTGTTTGTACAATGACCAGTGATGTATCATCCACTTCTTCATTTAGTGAACTCCCACGACAAACCGTGACTGGAATTTTATTTAAGCCTAGTTCCCTTCATGAAATCCATATATGAAAGAAATATTGTTCTTTTTTTCTTCTTCTGCCTCTGTCACGTTATGTATGTGATATGTTGCAGCACGCATCACATATCTTGATTTTCTTACCAGATTTGGGGAGACCTTTCAGTATGCATTTTGTTGTCCCTCAAGCATCTTTTCAAGGGAATATTGATAATGCTTACTATCTATACATACGATAAGGTGAAAAACATATGCCTTGTCGAAGTTCTGCTGATGCAGGAAGAGCTAGAGCCATTAATATTTTACCAATTTGGGTTGGACTTCCTTAGAAATTTTTTTTAGAAGGAAAAGTTTATATCTGTAATTGGATCGAGGTTTTTGTACATTCTTAAATCTTATGCATGGCTTCCAAACCTAAACAATTCTTTGTTATTACCTCATTTCTTTAGTTTCTAGATGCTGGCAACCATGGTACTTTATTTGGCCATGTGGAACTCAGTGTTATTTAAACCAAAAAGCACAAAAGAACTCTCGAAGTGCAAATAAAGTGTGAGATAATGAAAAAGGTCGCAAAGTGAGAAAATTTCAAATATATATGATTAGTTCAAGCTAATAATTATAAGCATGAATGAAGGATATATATGAACAAAAAAGTTAAAGACAATTCACGTAAAGTAAAGTATTGATTGTTTAGTGTCGCCTCTTCACAAGAGGCTTATTGACTAGGAAGAGTATGTCTTAGAACCTTGATGAAGATTAAGCGAGGCAAAGCGCCTCAACACGTTTTGAGCCTCGCTTCAGGGCTAAGTGCACTTTTGACAACACTGGTCAAACTTTAATTAGAATGTTGCTTTGTGCGTCAAAACATCTTAATCTGTCTTTATATAGTTTTCTGCTTAATGTTATTAACAAATATGTGTGAGACCTGACACAGGTATATAAGAAAGTTTCAGTTCTTAATCTTGGATTTTTCATTCATTGCTTGCTCTAGGAACTCATTTGGTATTCATATGGGTCTATTCCGTTGTTGCTGTTTGTTGTTTAAATTATAATGAAATCATCCTTTCTCTGAAACAGCCATCTGAATGTAATACATACGCGGACATTGATGCAGTATATAAATGCTTAAAGGAGCAATATGAGGTCAAAGATGAACAGTTAATAATCTATGGTCAATCTGTTGGCAGTGGCCCAACTGTTGATCTTGCATCACGAGTACCCAATTTACGAGGTGTTGTTTTACATAGTCCAATATTGTCT-GGTGTAAGAGTTTTGTACCCTGTCAAGCGGACATATTGGTTTGACATATACAAGGTAAAACACTCTCAGTGGTTATCTGTACGTAATGCTTTTCCATCTCCACTTGTAAAATCTGATTCCATTACTCCAATTAATTTCAGAACATTGACAAGATTAGTGCAGTGAATTGTCCGGTTCTCGTCATTCAT</genome_strand>
        <mrna_strand>CACCGCTTCTACCTTTTATTAATCGCAACGTGTTCCTTAGTTTC-CACCCCCACCCGCCTCGTCTTGGACT-AACGCGCCGCCCTGAAGAAGAAGATAAGGGAAAAGGGGGCTGCTTTATGATTGGTGCAGTAACGATAAGTTACTGTAGATAATGGGAGGAGTGACTTCTTCCATCGCTGCTAAGTTCGCCTTCTTCCCACCGACTCCGCCGTCTTACACGGTTGTCCCCGACGACGGCAAGTTTAGCATACCTGAGGTAGCTAGGAGAGATGGAGTAGACTTTTTGAAACTTCGTACTCGCCGTGGAAATGAAATCGTGGCCGTTCATGTGAAGCATCCAAAGGCATCTGCTACTATGCTGTATTCTCATGGTAATGCTGCTGATTTGGGTCAGATGTTTGAGCTCTTTGTTGAATTGAGCCTCCGTCTTCGTGTTAATCTCATGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGATTACTCTGGATATGGACAATCAACTGGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCTGAATGTAATACATACGCGGACATTGATGCAGTATATAAATGCTTAAAGGAGCAATATGAGGTCAAAGATGAACAGTTAATAATCTATGGTCAATCTGTTGGCAGTGGCCCAACTGTTGATCTTGCATCACGAGTACCCAATTTACGAGGTGTTGTTTTACATAGTCCAATATTGTCTGGGTGTAAGAGTTTTGTACCCTGTCAAGCGGACATATTGGTTTGACCTATACAAG......................................................................................AACATTGACAAGATTAGTGCAGTGAATTGTCCGGTTCTCGTCATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E736654" ref_strand="+" ref_description="SGN-E736654 [LC06CE06]">
      <seq>caactaccttttattagtcgtagcatattccttattttcaaacccccacgcgcctctcttggcctccacgcgccgccctgaagaagaagataagggaaaagggggctgctttatgattggtgcagtaacgataagttactgtagataatgggaggagtgacttcttccatcgctgctaagttcgccttcttcccaccgactccgccgtcttacacggttgtccccgacgacggcaagtttagcatacctgaggtagctaggagagatggagtagactttttgaaacttcgtactcgccgtggaaatgaaatcgtggccgttcatgtgaagcatccaaaggcatctgctactatgctgtattctcatggtaatgctgctgatttgggtcagatgtttgagctctttgttgaattgagcctccgtcttcgtgttaatctcatggggtatgattactctggatatggacaatcaactggaaagccatctgaatgtaatacatacgcggacattgatgcagtatataaatgcttaaaggagcaatatgaggtcaaagatgaacagttaataatctatggtcaatctgttggcagtggcccaactgttgatcttgcatcacgagtacccaatttacgaggtgttgttttacatagtccaatattgtctggtgtaagagttttgtaccctgtcaagcggacatattggtttgacatatacaagaacattgacaagattagtgcagtgaattgtccggttctcgtcattcatggaacagcggatgaagttgttgactactcccatgggaaacagctgtgggagctatgtaacgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="153945" stop="159590"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="154245" g_stop="154687" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="154688" i_stop="155759" i_length="1072">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.507" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155760" g_stop="155796" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="480" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155797" i_stop="158563" i_length="2767">
            <donor d_prob="0.930" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="158564" g_stop="158800" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="717" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="158801" i_stop="158886" i_length="86">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="158887" g_stop="158934" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="765" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="158935" i_stop="159226" i_length="292">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="159227" g_stop="159290" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="766" r_stop="829" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E736654" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="154245" e_stop="154687"/>
          <exon e_start="155760" e_stop="155796"/>
          <exon e_start="158564" e_stop="158800"/>
          <exon e_start="158887" e_stop="158934"/>
          <exon e_start="159227" e_stop="159290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAACCTTTTATTAGTCGTAGCATATTCCTTATTTTCAAACCCCCACGCGCCTCTCTTGGCCTCCACGCGCCGCCCTGAAGAAGAAGATAAGGGAAAAGGGGGCTGCTTTATGATTGGTGCAGTAACGATAAGTTACTGTAGATAATGGGAGGAGTGACTTCTTCCATCGCTGCTAAGTTCGCCTTCTTCCCACCGACTCCGCCGTCTTACACGGTTGTCCCCGACGACGGCAAGTTTAGCATACCTGAGGTAGCTAGGAGAGATGGAGTAGACTTTTTGAAACTTCGTACTCGCCGTGGAAATGAAATCGTGGCCGTTCATGTGAAGCATCCAAAGGCATCTGCTACTATGCTGTATTCTCATGGTAATGCTGCTGATTTGGGTCAGATGTTTGAGCTCTTTGTTGAATTGAGCCTCCGTCTTCGTGTTAATCTCATGGGGTAATTTAATTAAGCTTCCCTTTTAATTTCCACAATTTTATTTCCTAGTTTCTCAATTTTGTTTCCGTTATCTGATTCTGAGCTAAAGCTTATCTTTTTTTTTTCTCTTAAGTCCTAATTCTGTTTTAATTTTTTTTTTTGTTCTTTTTCTTGAATCTAGCAATTGGAAAGACACCTTATGCAGTAATTGAGATTTTGTAACTTTCATATTTGGATCACTTTTTTTTTTCTTGAATAAGAGCAAAGGTTGGAAGTAAAATACTTAAACATTTTTTTGGCCAAGACATTTAGTTGAGCAGAAATAAGACATCTTTAGTAGAACATACTCCAAATTGAGAATTTTGTTGAGATTTTACAAAAGTTTGAAGTTGTTTGCTTTAATTTATTGGGCATGACACAGTCTAATGTGTTTCTGAAACATGACTTACTTTATGCTGTATGTTTTGATTCTCCGGTAAGGTGATAAGCTGTTTTTACTCCGTGTCATGACTTCCCTAGCTTTAAGAATTCTTTTTGAGATTTTACGAAATTGGAGAAAATTTGAGGTTGTTTGTTTTAAACTGTACTGCGTTACACACCGTGCTAATTTTCTGAAATGCGACTAACATTAGGCTATTTATACGGACTCTCCTATAATGTGGAGATGTCATGAAATTGTTATTTTTGTGCTGTATTTTCCTAACATTGATGCTATGGTTGATACATGATTACTAGTGGATAATAATTTGATGAACAAGTAGACGTTAGAAGAAAGCCAAGCTTGAGGTCCAGGAGTCCAATTCAAGCAAGCAGCTTGTTTGGCTTTACTAGTTTACTCTATACTAGATTTTAGTAACTCGTGATCATTTCCTATCTTCTGTGCAATTTGACCTATTGCGAGTTGCATCTGAAAGACCCCCGATGAAGTTAATATTATGGTTGAACCCTCTGGTCTCTCTGTCTTTCTCTAGTTTCGTAAATTGAGCTTTCATTTGCTTCAATTCTAGAACTTTTTTAATGTCAAACTAAACAGTAGGATTGCCGTTTGATTTCTCAGACCCTCCTGACGTTGCTCATATGGTTTCTTGTTTAGGTATGATTACTCTGGATATGGACAATCAACTGGAAAGGTTAGATACCTGCTTCCTTGGTCATATATACTTGGCAACTTTTTGTTCCCCGTCTTCATAAAGAAAACAGGGACAAAGAGAAAAACCTCACTGCCTTCATCAGTTTCAGTTTGTTACGTGTATAATAACATTATTAGTAGGAAGAAAAATGACATCTGTTTTGAAAACTGGCTTTATTAACCAGCTCTAACTTGCAATGATACTTGTTAATAGACGAATGTGATGGTAGAACTTTAAATTTTACCTTTTTGGACTTGCATTAAAATTTCGGAATATTAAAAGTAAATGTTGCTTAGATATGGTAGAATCCAGGTGTCAACGTCCTCATCCCTGAGCTATATAATTGTTATATTTGTTTTGATTTATATGTGGGCATATCATATTTATGAAATTCTTATGCAACCTTCATGTAAAAATTGAAGGTTTCTTTCTTAAAATGTTCGTTTGCTCATTTTTGGTAGATTTCTTATTTATTGAAAGAAAAAAAAACATTTTCTCTAGATTTCTTACATGGAAGTTTAGTATAAAGACCATGGATGATGTCAATGTTATATCACCTCTCCTTCAGGCCTCGTATTAATCATTTAACGCCACTTGTCACCCATGTTGCTATATGGTCTTAAACTCCCAACTCCTAAGATTCTCTGAAGCAAAATTTGATGTCAGAGAACAGATATCTTATCCTCTGTAATCGCTCCAGTAATTTGTCACTCCAAATTTGGACAACGATATATAATGCCAAGGGAAATTAATCTCTTAACTGATGCTAATAATGCAAAAGAACCATTTCCAAACGATAAGTTTGGATGTTACTTGTACTCTATTATTACAGATGGTTTTTCATCTATTTTACAACATCAACAAGTCAATTTAATATGGATATCACTTGGGTGATTATGTGATGCGCGAATAAACATAAAGACTGGTATTCTTTTTTGCTCACTTGCAAACATACAAGGACAAGGCAGCTAATACTAAACCAATAAGTGAAGTAGTCGTCGTCTGACCAATCGGCTCAGACACGGGACTTCCCCTACCAGCTATTTTGTCTTGCCCAAAATGGATTGGCTCTCTTAGTTAAGTTGCCCCCCAAACCTGTGGGCTGTGTGTCCAGCTCCGCCTTTATCCTCTGTACCTTCTTTTTGTTTTTGCGTCTGGGGTAGGAATATGTCGTATAATTTGAAAGCATTATTTGCAAGAACACACTAACATTGATTATTTTAAGGTAGCATTGATTACTCGGCAGATATTATAGAACACATCTAATCTGTTTCATTACCACCGCATATGTTACCTAACCTTCAGCTTAGTTTCTCCTTTCTCATTAGAACCACAACTAGAAGCACTAGCTAACCAAACTAGTTCACGTAGTTGGTTCTGTCAAATTATCTGAACCCTGCAATGCACTTTTTGGACTTAATTGCTTATTTTTGTTGTCTTATAATAGTAAGTTTTTTCGTTCCTAGGAAGGAATGCCAAGGTGTAGTATTGGCAATGGGCTTGTGTTTAGTCATAAATTCTCTATAACCCTGACCGGTAACCGGTCTAAGAACAGGAGCTGTTTGTCAATGAACTCTTAAAAGCTTTAACGTTCATTTTTAAATTCTCAAGGAAGAGCTTGCTTGCCTTGTTTGTACAATGACCAGTGATGTATCATCCACTTCTTCATTTAGTGAACTCCCACGACAAACCGTGACTGGAATTTTATTTAAGCCTAGTTCCCTTCATGAAATCCATATATGAAAGAAATATTGTTCTTTTTTTCTTCTTCTGCCTCTGTCACGTTATGTATGTGATATGTTGCAGCACGCATCACATATCTTGATTTTCTTACCAGATTTGGGGAGACCTTTCAGTATGCATTTTGTTGTCCCTCAAGCATCTTTTCAAGGGAATATTGATAATGCTTACTATCTATACATACGATAAGGTGAAAAACATATGCCTTGTCGAAGTTCTGCTGATGCAGGAAGAGCTAGAGCCATTAATATTTTACCAATTTGGGTTGGACTTCCTTAGAAATTTTTTTTAGAAGGAAAAGTTTATATCTGTAATTGGATCGAGGTTTTTGTACATTCTTAAATCTTATGCATGGCTTCCAAACCTAAACAATTCTTTGTTATTACCTCATTTCTTTAGTTTCTAGATGCTGGCAACCATGGTACTTTATTTGGCCATGTGGAACTCAGTGTTATTTAAACCAAAAAGCACAAAAGAACTCTCGAAGTGCAAATAAAGTGTGAGATAATGAAAAAGGTCGCAAAGTGAGAAAATTTCAAATATATATGATTAGTTCAAGCTAATAATTATAAGCATGAATGAAGGATATATATGAACAAAAAAGTTAAAGACAATTCACGTAAAGTAAAGTATTGATTGTTTAGTGTCGCCTCTTCACAAGAGGCTTATTGACTAGGAAGAGTATGTCTTAGAACCTTGATGAAGATTAAGCGAGGCAAAGCGCCTCAACACGTTTTGAGCCTCGCTTCAGGGCTAAGTGCACTTTTGACAACACTGGTCAAACTTTAATTAGAATGTTGCTTTGTGCGTCAAAACATCTTAATCTGTCTTTATATAGTTTTCTGCTTAATGTTATTAACAAATATGTGTGAGACCTGACACAGGTATATAAGAAAGTTTCAGTTCTTAATCTTGGATTTTTCATTCATTGCTTGCTCTAGGAACTCATTTGGTATTCATATGGGTCTATTCCGTTGTTGCTGTTTGTTGTTTAAATTATAATGAAATCATCCTTTCTCTGAAACAGCCATCTGAATGTAATACATACGCGGACATTGATGCAGTATATAAATGCTTAAAGGAGCAATATGAGGTCAAAGATGAACAGTTAATAATCTATGGTCAATCTGTTGGCAGTGGCCCAACTGTTGATCTTGCATCACGAGTACCCAATTTACGAGGTGTTGTTTTACATAGTCCAATATTGTCTGGTGTAAGAGTTTTGTACCCTGTCAAGCGGACATATTGGTTTGACATATACAAGGTAAAACACTCTCAGTGGTTATCTGTACGTAATGCTTTTCCATCTCCACTTGTAAAATCTGATTCCATTACTCCAATTAATTTCAGAACATTGACAAGATTAGTGCAGTGAATTGTCCGGTTCTCGTCATTCATGTAAGTTTTCCTTCTTATCCAATCTTTTATACTTCTACTCCATAATTAGCAATCTCTTTCAAATTCAATCTATTTACAAATACCTCACAGTATAGATGGGTCCAGGATAGATGGCGGGGCAACTGTCCTGTTACTGGTTAATTTAATAACTGTAGATCCTCTATGTGTTTGTACCTCCCAACGATTCTAATTCTTTACCTGTTAATAAACTACTTTAGACACTTTCTGCCTTGTGCCTCCCAAAGGTTCTGTTTTTGAACATTTTACTCAAAGAATTTTAACACGTGTATAGGGAACAGCGGATGAAGTTGTTGACTACTCCCATGGGAAACAGCTGTGGGAGCTATGTAACGAAA</genome_strand>
        <mrna_strand>CAACTACCTTTTATTAGTCGTAGCATATTCCTTATTTTCAAACCCCCACGCGCCTCTCTTGGCCTCCACGCGCCGCCCTGAAGAAGAAGATAAGGGAAAAGGGGGCTGCTTTATGATTGGTGCAGTAACGATAAGTTACTGTAGATAATGGGAGGAGTGACTTCTTCCATCGCTGCTAAGTTCGCCTTCTTCCCACCGACTCCGCCGTCTTACACGGTTGTCCCCGACGACGGCAAGTTTAGCATACCTGAGGTAGCTAGGAGAGATGGAGTAGACTTTTTGAAACTTCGTACTCGCCGTGGAAATGAAATCGTGGCCGTTCATGTGAAGCATCCAAAGGCATCTGCTACTATGCTGTATTCTCATGGTAATGCTGCTGATTTGGGTCAGATGTTTGAGCTCTTTGTTGAATTGAGCCTCCGTCTTCGTGTTAATCTCATGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGATTACTCTGGATATGGACAATCAACTGGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCTGAATGTAATACATACGCGGACATTGATGCAGTATATAAATGCTTAAAGGAGCAATATGAGGTCAAAGATGAACAGTTAATAATCTATGGTCAATCTGTTGGCAGTGGCCCAACTGTTGATCTTGCATCACGAGTACCCAATTTACGAGGTGTTGTTTTACATAGTCCAATATTGTCTGGTGTAAGAGTTTTGTACCCTGTCAAGCGGACATATTGGTTTGACATATACAAG......................................................................................AACATTGACAAGATTAGTGCAGTGAATTGTCCGGTTCTCGTCATTCAT....................................................................................................................................................................................................................................................................................................GGAACAGCGGATGAAGTTGTTGACTACTCCCATGGGAAACAGCTGTGGGAGCTATGTAACGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E422497" ref_strand="+" ref_description="SGN-E422497 [STM-40-F1]">
      <seq>ctttttttttcaaaccgctacgcgcctcccttgacctccacgcgccgccctgaagaagaagataggggaaaagggggctgctttatgattggtgcagtagcattaagttactgtagataatgggaggagtgacttcttccatcgctgctaagttcgccttcttcccaccgactccgccgtcgtatacggtggtccccgacgacggcaagtttagcatacctgaggtagctaggagagatggagtagactttttgaaacttcgtactcgccgtggaaatgaaatcgtggccgttcatgtgaagcatccaaaggcatctgctactatgctgtactctcatggtaatgctgctgatttgggtcagatgtttgagctctttgttgaattgagcctccgtcttcgtgttaatctcatggggtatgattactctggatatggacaatcaagtggaaagccatctgaatgtaatacgtacgcggacattgatgcagtatataaatgtttaaaggagcaatatggggtcaaagatgaacagctaatactctatggtcaatctgttggcagtggcccaactgttgatcttgcatcacgagtacccaatttacgaagtgttgttttacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="153976" stop="159031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="154273" g_stop="154687" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="154688" i_stop="155759" i_length="1072">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.507" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155760" g_stop="155796" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="452" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155797" i_stop="158563" i_length="2767">
            <donor d_prob="0.930" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="158564" g_stop="158731" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="620" r_length="168" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E422497" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E422497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="154273" e_stop="154687"/>
          <exon e_start="155760" e_stop="155796"/>
          <exon e_start="158564" e_stop="158731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTATTTTCAAACCCCCACGCGCCTCTCTTGGCCTCCACGCGCCGCCCTGAAGAAGAAGATAAGGGAAAAGGGGGCTGCTTTATGATTGGTGCAGTAACGATAAGTTACTGTAGATAATGGGAGGAGTGACTTCTTCCATCGCTGCTAAGTTCGCCTTCTTCCCACCGACTCCGCCGTCTTACACGGTTGTCCCCGACGACGGCAAGTTTAGCATACCTGAGGTAGCTAGGAGAGATGGAGTAGACTTTTTGAAACTTCGTACTCGCCGTGGAAATGAAATCGTGGCCGTTCATGTGAAGCATCCAAAGGCATCTGCTACTATGCTGTATTCTCATGGTAATGCTGCTGATTTGGGTCAGATGTTTGAGCTCTTTGTTGAATTGAGCCTCCGTCTTCGTGTTAATCTCATGGGGTAATTTAATTAAGCTTCCCTTTTAATTTCCACAATTTTATTTCCTAGTTTCTCAATTTTGTTTCCGTTATCTGATTCTGAGCTAAAGCTTATCTTTTTTTTTTCTCTTAAGTCCTAATTCTGTTTTAATTTTTTTTTTTGTTCTTTTTCTTGAATCTAGCAATTGGAAAGACACCTTATGCAGTAATTGAGATTTTGTAACTTTCATATTTGGATCACTTTTTTTTTTCTTGAATAAGAGCAAAGGTTGGAAGTAAAATACTTAAACATTTTTTTGGCCAAGACATTTAGTTGAGCAGAAATAAGACATCTTTAGTAGAACATACTCCAAATTGAGAATTTTGTTGAGATTTTACAAAAGTTTGAAGTTGTTTGCTTTAATTTATTGGGCATGACACAGTCTAATGTGTTTCTGAAACATGACTTACTTTATGCTGTATGTTTTGATTCTCCGGTAAGGTGATAAGCTGTTTTTACTCCGTGTCATGACTTCCCTAGCTTTAAGAATTCTTTTTGAGATTTTACGAAATTGGAGAAAATTTGAGGTTGTTTGTTTTAAACTGTACTGCGTTACACACCGTGCTAATTTTCTGAAATGCGACTAACATTAGGCTATTTATACGGACTCTCCTATAATGTGGAGATGTCATGAAATTGTTATTTTTGTGCTGTATTTTCCTAACATTGATGCTATGGTTGATACATGATTACTAGTGGATAATAATTTGATGAACAAGTAGACGTTAGAAGAAAGCCAAGCTTGAGGTCCAGGAGTCCAATTCAAGCAAGCAGCTTGTTTGGCTTTACTAGTTTACTCTATACTAGATTTTAGTAACTCGTGATCATTTCCTATCTTCTGTGCAATTTGACCTATTGCGAGTTGCATCTGAAAGACCCCCGATGAAGTTAATATTATGGTTGAACCCTCTGGTCTCTCTGTCTTTCTCTAGTTTCGTAAATTGAGCTTTCATTTGCTTCAATTCTAGAACTTTTTTAATGTCAAACTAAACAGTAGGATTGCCGTTTGATTTCTCAGACCCTCCTGACGTTGCTCATATGGTTTCTTGTTTAGGTATGATTACTCTGGATATGGACAATCAACTGGAAAGGTTAGATACCTGCTTCCTTGGTCATATATACTTGGCAACTTTTTGTTCCCCGTCTTCATAAAGAAAACAGGGACAAAGAGAAAAACCTCACTGCCTTCATCAGTTTCAGTTTGTTACGTGTATAATAACATTATTAGTAGGAAGAAAAATGACATCTGTTTTGAAAACTGGCTTTATTAACCAGCTCTAACTTGCAATGATACTTGTTAATAGACGAATGTGATGGTAGAACTTTAAATTTTACCTTTTTGGACTTGCATTAAAATTTCGGAATATTAAAAGTAAATGTTGCTTAGATATGGTAGAATCCAGGTGTCAACGTCCTCATCCCTGAGCTATATAATTGTTATATTTGTTTTGATTTATATGTGGGCATATCATATTTATGAAATTCTTATGCAACCTTCATGTAAAAATTGAAGGTTTCTTTCTTAAAATGTTCGTTTGCTCATTTTTGGTAGATTTCTTATTTATTGAAAGAAAAAAAAACATTTTCTCTAGATTTCTTACATGGAAGTTTAGTATAAAGACCATGGATGATGTCAATGTTATATCACCTCTCCTTCAGGCCTCGTATTAATCATTTAACGCCACTTGTCACCCATGTTGCTATATGGTCTTAAACTCCCAACTCCTAAGATTCTCTGAAGCAAAATTTGATGTCAGAGAACAGATATCTTATCCTCTGTAATCGCTCCAGTAATTTGTCACTCCAAATTTGGACAACGATATATAATGCCAAGGGAAATTAATCTCTTAACTGATGCTAATAATGCAAAAGAACCATTTCCAAACGATAAGTTTGGATGTTACTTGTACTCTATTATTACAGATGGTTTTTCATCTATTTTACAACATCAACAAGTCAATTTAATATGGATATCACTTGGGTGATTATGTGATGCGCGAATAAACATAAAGACTGGTATTCTTTTTTGCTCACTTGCAAACATACAAGGACAAGGCAGCTAATACTAAACCAATAAGTGAAGTAGTCGTCGTCTGACCAATCGGCTCAGACACGGGACTTCCCCTACCAGCTATTTTGTCTTGCCCAAAATGGATTGGCTCTCTTAGTTAAGTTGCCCCCCAAACCTGTGGGCTGTGTGTCCAGCTCCGCCTTTATCCTCTGTACCTTCTTTTTGTTTTTGCGTCTGGGGTAGGAATATGTCGTATAATTTGAAAGCATTATTTGCAAGAACACACTAACATTGATTATTTTAAGGTAGCATTGATTACTCGGCAGATATTATAGAACACATCTAATCTGTTTCATTACCACCGCATATGTTACCTAACCTTCAGCTTAGTTTCTCCTTTCTCATTAGAACCACAACTAGAAGCACTAGCTAACCAAACTAGTTCACGTAGTTGGTTCTGTCAAATTATCTGAACCCTGCAATGCACTTTTTGGACTTAATTGCTTATTTTTGTTGTCTTATAATAGTAAGTTTTTTCGTTCCTAGGAAGGAATGCCAAGGTGTAGTATTGGCAATGGGCTTGTGTTTAGTCATAAATTCTCTATAACCCTGACCGGTAACCGGTCTAAGAACAGGAGCTGTTTGTCAATGAACTCTTAAAAGCTTTAACGTTCATTTTTAAATTCTCAAGGAAGAGCTTGCTTGCCTTGTTTGTACAATGACCAGTGATGTATCATCCACTTCTTCATTTAGTGAACTCCCACGACAAACCGTGACTGGAATTTTATTTAAGCCTAGTTCCCTTCATGAAATCCATATATGAAAGAAATATTGTTCTTTTTTTCTTCTTCTGCCTCTGTCACGTTATGTATGTGATATGTTGCAGCACGCATCACATATCTTGATTTTCTTACCAGATTTGGGGAGACCTTTCAGTATGCATTTTGTTGTCCCTCAAGCATCTTTTCAAGGGAATATTGATAATGCTTACTATCTATACATACGATAAGGTGAAAAACATATGCCTTGTCGAAGTTCTGCTGATGCAGGAAGAGCTAGAGCCATTAATATTTTACCAATTTGGGTTGGACTTCCTTAGAAATTTTTTTTAGAAGGAAAAGTTTATATCTGTAATTGGATCGAGGTTTTTGTACATTCTTAAATCTTATGCATGGCTTCCAAACCTAAACAATTCTTTGTTATTACCTCATTTCTTTAGTTTCTAGATGCTGGCAACCATGGTACTTTATTTGGCCATGTGGAACTCAGTGTTATTTAAACCAAAAAGCACAAAAGAACTCTCGAAGTGCAAATAAAGTGTGAGATAATGAAAAAGGTCGCAAAGTGAGAAAATTTCAAATATATATGATTAGTTCAAGCTAATAATTATAAGCATGAATGAAGGATATATATGAACAAAAAAGTTAAAGACAATTCACGTAAAGTAAAGTATTGATTGTTTAGTGTCGCCTCTTCACAAGAGGCTTATTGACTAGGAAGAGTATGTCTTAGAACCTTGATGAAGATTAAGCGAGGCAAAGCGCCTCAACACGTTTTGAGCCTCGCTTCAGGGCTAAGTGCACTTTTGACAACACTGGTCAAACTTTAATTAGAATGTTGCTTTGTGCGTCAAAACATCTTAATCTGTCTTTATATAGTTTTCTGCTTAATGTTATTAACAAATATGTGTGAGACCTGACACAGGTATATAAGAAAGTTTCAGTTCTTAATCTTGGATTTTTCATTCATTGCTTGCTCTAGGAACTCATTTGGTATTCATATGGGTCTATTCCGTTGTTGCTGTTTGTTGTTTAAATTATAATGAAATCATCCTTTCTCTGAAACAGCCATCTGAATGTAATACATACGCGGACATTGATGCAGTATATAAATGCTTAAAGGAGCAATATGAGGTCAAAGATGAACAGTTAATAATCTATGGTCAATCTGTTGGCAGTGGCCCAACTGTTGATCTTGCATCACGAGTACCCAATTTACGAGGTGTTGTTTTACAT</genome_strand>
        <mrna_strand>CTTTTTTTTTCAAACCGCTACGCGCCTCCCTTGACCTCCACGCGCCGCCCTGAAGAAGAAGATAGGGGAAAAGGGGGCTGCTTTATGATTGGTGCAGTAGCATTAAGTTACTGTAGATAATGGGAGGAGTGACTTCTTCCATCGCTGCTAAGTTCGCCTTCTTCCCACCGACTCCGCCGTCGTATACGGTGGTCCCCGACGACGGCAAGTTTAGCATACCTGAGGTAGCTAGGAGAGATGGAGTAGACTTTTTGAAACTTCGTACTCGCCGTGGAAATGAAATCGTGGCCGTTCATGTGAAGCATCCAAAGGCATCTGCTACTATGCTGTACTCTCATGGTAATGCTGCTGATTTGGGTCAGATGTTTGAGCTCTTTGTTGAATTGAGCCTCCGTCTTCGTGTTAATCTCATGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGATTACTCTGGATATGGACAATCAAGTGGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCTGAATGTAATACGTACGCGGACATTGATGCAGTATATAAATGTTTAAAGGAGCAATATGGGGTCAAAGATGAACAGCTAATACTCTATGGTCAATCTGTTGGCAGTGGCCCAACTGTTGATCTTGCATCACGAGTACCCAATTTACGAAGTGTTGTTTTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E448466" ref_strand="+" ref_description="SGN-E448466 [cSTS-3-E6]">
      <seq>ctttttttttaaaccgctacgcgcctcccttgacctccacgcgccgccctgaagaagaagataggggaaaagggggctgctttatgattggtgcagtagcattaagttactgtagataatgggaggagtgacttcttccatcgctgctaagttcgccttcttcccaccgactccgccgtcgtatacggtggtccccgacgacggcaagtttagcatacctgaggtagctaggagagatggagtagactttttgaaacttcgtactcgccgtggaaatgaaatcgtggccgttcatgtgaagcatccaaaggcatctgctactatgctgtactctcatggtaatgctgctgatttgggtcagatgtttgagctctttgttgaattgagcctccgtcttcgtgttaatctcatggggtatgattactctggatatggacaatcaagtggaaagccatctgaatgtaatacgtacgcggacattgatgcagtatataaatgtttaaaggagcaatatggggtcaaagatgaacagctaatactctatggtcaatctgttggcagtggcccaactgttgatcttgcatcacgagtacccaatttacgaggtgttgttttacatagtccaatattgtctggtgtaagagttttgtaccctgtcaagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="153976" stop="159075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="154274" g_stop="154687" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="154688" i_stop="155759" i_length="1072">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.507" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155760" g_stop="155796" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="451" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155797" i_stop="158563" i_length="2767">
            <donor d_prob="0.930" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="158564" g_stop="158775" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="663" r_length="212" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E448466" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="154274" e_stop="154687"/>
          <exon e_start="155760" e_stop="155796"/>
          <exon e_start="158564" e_stop="158775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTATTTTCAAACCCCCACGCGCCTCTCTTGGCCTCCACGCGCCGCCCTGAAGAAGAAGATAAGGGAAAAGGGGGCTGCTTTATGATTGGTGCAGTAACGATAAGTTACTGTAGATAATGGGAGGAGTGACTTCTTCCATCGCTGCTAAGTTCGCCTTCTTCCCACCGACTCCGCCGTCTTACACGGTTGTCCCCGACGACGGCAAGTTTAGCATACCTGAGGTAGCTAGGAGAGATGGAGTAGACTTTTTGAAACTTCGTACTCGCCGTGGAAATGAAATCGTGGCCGTTCATGTGAAGCATCCAAAGGCATCTGCTACTATGCTGTATTCTCATGGTAATGCTGCTGATTTGGGTCAGATGTTTGAGCTCTTTGTTGAATTGAGCCTCCGTCTTCGTGTTAATCTCATGGGGTAATTTAATTAAGCTTCCCTTTTAATTTCCACAATTTTATTTCCTAGTTTCTCAATTTTGTTTCCGTTATCTGATTCTGAGCTAAAGCTTATCTTTTTTTTTTCTCTTAAGTCCTAATTCTGTTTTAATTTTTTTTTTTGTTCTTTTTCTTGAATCTAGCAATTGGAAAGACACCTTATGCAGTAATTGAGATTTTGTAACTTTCATATTTGGATCACTTTTTTTTTTCTTGAATAAGAGCAAAGGTTGGAAGTAAAATACTTAAACATTTTTTTGGCCAAGACATTTAGTTGAGCAGAAATAAGACATCTTTAGTAGAACATACTCCAAATTGAGAATTTTGTTGAGATTTTACAAAAGTTTGAAGTTGTTTGCTTTAATTTATTGGGCATGACACAGTCTAATGTGTTTCTGAAACATGACTTACTTTATGCTGTATGTTTTGATTCTCCGGTAAGGTGATAAGCTGTTTTTACTCCGTGTCATGACTTCCCTAGCTTTAAGAATTCTTTTTGAGATTTTACGAAATTGGAGAAAATTTGAGGTTGTTTGTTTTAAACTGTACTGCGTTACACACCGTGCTAATTTTCTGAAATGCGACTAACATTAGGCTATTTATACGGACTCTCCTATAATGTGGAGATGTCATGAAATTGTTATTTTTGTGCTGTATTTTCCTAACATTGATGCTATGGTTGATACATGATTACTAGTGGATAATAATTTGATGAACAAGTAGACGTTAGAAGAAAGCCAAGCTTGAGGTCCAGGAGTCCAATTCAAGCAAGCAGCTTGTTTGGCTTTACTAGTTTACTCTATACTAGATTTTAGTAACTCGTGATCATTTCCTATCTTCTGTGCAATTTGACCTATTGCGAGTTGCATCTGAAAGACCCCCGATGAAGTTAATATTATGGTTGAACCCTCTGGTCTCTCTGTCTTTCTCTAGTTTCGTAAATTGAGCTTTCATTTGCTTCAATTCTAGAACTTTTTTAATGTCAAACTAAACAGTAGGATTGCCGTTTGATTTCTCAGACCCTCCTGACGTTGCTCATATGGTTTCTTGTTTAGGTATGATTACTCTGGATATGGACAATCAACTGGAAAGGTTAGATACCTGCTTCCTTGGTCATATATACTTGGCAACTTTTTGTTCCCCGTCTTCATAAAGAAAACAGGGACAAAGAGAAAAACCTCACTGCCTTCATCAGTTTCAGTTTGTTACGTGTATAATAACATTATTAGTAGGAAGAAAAATGACATCTGTTTTGAAAACTGGCTTTATTAACCAGCTCTAACTTGCAATGATACTTGTTAATAGACGAATGTGATGGTAGAACTTTAAATTTTACCTTTTTGGACTTGCATTAAAATTTCGGAATATTAAAAGTAAATGTTGCTTAGATATGGTAGAATCCAGGTGTCAACGTCCTCATCCCTGAGCTATATAATTGTTATATTTGTTTTGATTTATATGTGGGCATATCATATTTATGAAATTCTTATGCAACCTTCATGTAAAAATTGAAGGTTTCTTTCTTAAAATGTTCGTTTGCTCATTTTTGGTAGATTTCTTATTTATTGAAAGAAAAAAAAACATTTTCTCTAGATTTCTTACATGGAAGTTTAGTATAAAGACCATGGATGATGTCAATGTTATATCACCTCTCCTTCAGGCCTCGTATTAATCATTTAACGCCACTTGTCACCCATGTTGCTATATGGTCTTAAACTCCCAACTCCTAAGATTCTCTGAAGCAAAATTTGATGTCAGAGAACAGATATCTTATCCTCTGTAATCGCTCCAGTAATTTGTCACTCCAAATTTGGACAACGATATATAATGCCAAGGGAAATTAATCTCTTAACTGATGCTAATAATGCAAAAGAACCATTTCCAAACGATAAGTTTGGATGTTACTTGTACTCTATTATTACAGATGGTTTTTCATCTATTTTACAACATCAACAAGTCAATTTAATATGGATATCACTTGGGTGATTATGTGATGCGCGAATAAACATAAAGACTGGTATTCTTTTTTGCTCACTTGCAAACATACAAGGACAAGGCAGCTAATACTAAACCAATAAGTGAAGTAGTCGTCGTCTGACCAATCGGCTCAGACACGGGACTTCCCCTACCAGCTATTTTGTCTTGCCCAAAATGGATTGGCTCTCTTAGTTAAGTTGCCCCCCAAACCTGTGGGCTGTGTGTCCAGCTCCGCCTTTATCCTCTGTACCTTCTTTTTGTTTTTGCGTCTGGGGTAGGAATATGTCGTATAATTTGAAAGCATTATTTGCAAGAACACACTAACATTGATTATTTTAAGGTAGCATTGATTACTCGGCAGATATTATAGAACACATCTAATCTGTTTCATTACCACCGCATATGTTACCTAACCTTCAGCTTAGTTTCTCCTTTCTCATTAGAACCACAACTAGAAGCACTAGCTAACCAAACTAGTTCACGTAGTTGGTTCTGTCAAATTATCTGAACCCTGCAATGCACTTTTTGGACTTAATTGCTTATTTTTGTTGTCTTATAATAGTAAGTTTTTTCGTTCCTAGGAAGGAATGCCAAGGTGTAGTATTGGCAATGGGCTTGTGTTTAGTCATAAATTCTCTATAACCCTGACCGGTAACCGGTCTAAGAACAGGAGCTGTTTGTCAATGAACTCTTAAAAGCTTTAACGTTCATTTTTAAATTCTCAAGGAAGAGCTTGCTTGCCTTGTTTGTACAATGACCAGTGATGTATCATCCACTTCTTCATTTAGTGAACTCCCACGACAAACCGTGACTGGAATTTTATTTAAGCCTAGTTCCCTTCATGAAATCCATATATGAAAGAAATATTGTTCTTTTTTTCTTCTTCTGCCTCTGTCACGTTATGTATGTGATATGTTGCAGCACGCATCACATATCTTGATTTTCTTACCAGATTTGGGGAGACCTTTCAGTATGCATTTTGTTGTCCCTCAAGCATCTTTTCAAGGGAATATTGATAATGCTTACTATCTATACATACGATAAGGTGAAAAACATATGCCTTGTCGAAGTTCTGCTGATGCAGGAAGAGCTAGAGCCATTAATATTTTACCAATTTGGGTTGGACTTCCTTAGAAATTTTTTTTAGAAGGAAAAGTTTATATCTGTAATTGGATCGAGGTTTTTGTACATTCTTAAATCTTATGCATGGCTTCCAAACCTAAACAATTCTTTGTTATTACCTCATTTCTTTAGTTTCTAGATGCTGGCAACCATGGTACTTTATTTGGCCATGTGGAACTCAGTGTTATTTAAACCAAAAAGCACAAAAGAACTCTCGAAGTGCAAATAAAGTGTGAGATAATGAAAAAGGTCGCAAAGTGAGAAAATTTCAAATATATATGATTAGTTCAAGCTAATAATTATAAGCATGAATGAAGGATATATATGAACAAAAAAGTTAAAGACAATTCACGTAAAGTAAAGTATTGATTGTTTAGTGTCGCCTCTTCACAAGAGGCTTATTGACTAGGAAGAGTATGTCTTAGAACCTTGATGAAGATTAAGCGAGGCAAAGCGCCTCAACACGTTTTGAGCCTCGCTTCAGGGCTAAGTGCACTTTTGACAACACTGGTCAAACTTTAATTAGAATGTTGCTTTGTGCGTCAAAACATCTTAATCTGTCTTTATATAGTTTTCTGCTTAATGTTATTAACAAATATGTGTGAGACCTGACACAGGTATATAAGAAAGTTTCAGTTCTTAATCTTGGATTTTTCATTCATTGCTTGCTCTAGGAACTCATTTGGTATTCATATGGGTCTATTCCGTTGTTGCTGTTTGTTGTTTAAATTATAATGAAATCATCCTTTCTCTGAAACAGCCATCTGAATGTAATACATACGCGGACATTGATGCAGTATATAAATGCTTAAAGGAGCAATATGAGGTCAAAGATGAACAGTTAATAATCTATGGTCAATCTGTTGGCAGTGGCCCAACTGTTGATCTTGCATCACGAGTACCCAATTTACGAGGTGTTGTTTTACATAGTCCAATATTGTCTGGTGTAAGAGTTTTGTACCCTGTCAAGCG</genome_strand>
        <mrna_strand>CTTTTTTTTTAAACCGCTACGCGCCTCCCTTGACCTCCACGCGCCGCCCTGAAGAAGAAGATAGGGGAAAAGGGGGCTGCTTTATGATTGGTGCAGTAGCATTAAGTTACTGTAGATAATGGGAGGAGTGACTTCTTCCATCGCTGCTAAGTTCGCCTTCTTCCCACCGACTCCGCCGTCGTATACGGTGGTCCCCGACGACGGCAAGTTTAGCATACCTGAGGTAGCTAGGAGAGATGGAGTAGACTTTTTGAAACTTCGTACTCGCCGTGGAAATGAAATCGTGGCCGTTCATGTGAAGCATCCAAAGGCATCTGCTACTATGCTGTACTCTCATGGTAATGCTGCTGATTTGGGTCAGATGTTTGAGCTCTTTGTTGAATTGAGCCTCCGTCTTCGTGTTAATCTCATGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGATTACTCTGGATATGGACAATCAAGTGGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCTGAATGTAATACGTACGCGGACATTGATGCAGTATATAAATGTTTAAAGGAGCAATATGGGGTCAAAGATGAACAGCTAATACTCTATGGTCAATCTGTTGGCAGTGGCCCAACTGTTGATCTTGCATCACGAGTACCCAATTTACGAGGTGTTGTTTTACATAGTCCAATATTGTCTGGTGTAAGAGTTTTGTACCCTGTCAAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332931" ref_strand="+" ref_description="SGN-E332931 [cTOD-19-O24]">
      <seq>cttattttcaaacccccacgcgcctctcttggcctccacgcgccgccctgaagaagaagataagggaaaagggggctgctttatgattggtgcagtaacgataagttactgtagataatgggaggagtgacttcttccatcgctgctaagttcgccttcttcccaccgactccgccgtcttacacggttgtccccgacgacggcaagtttagcatacctgaggtagctaggagagatggagtagactttttgaaacttcgtactcgccgtggaaatgaaatcgtggccgttcatgtgaagcatccaaaggcatctgctactatgctgtattctcatggtaatgctgctgatttgggtcagatgtttgagctctttgttgaattgagcctccgtcttcgtgttaatctcatggggtaatttaattaagcttcccttttaatttccacaattttatttcctagtttctcaattttgtttccgttatctgattctgagctaaagcttatcttttttttttctcttaagtcctaattctggtttaatttttttttttgttctttttcttgaatctagcaattggaaagacaccttatgcagtaattgagattttgtaactttcatatttggatcactttttttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="153975" stop="155215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="154275" g_stop="154916" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="642" r_length="642" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E332931" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="154275" e_stop="154916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTTTCAAACCCCCACGCGCCTCTCTTGGCCTCCACGCGCCGCCCTGAAGAAGAAGATAAGGGAAAAGGGGGCTGCTTTATGATTGGTGCAGTAACGATAAGTTACTGTAGATAATGGGAGGAGTGACTTCTTCCATCGCTGCTAAGTTCGCCTTCTTCCCACCGACTCCGCCGTCTTACACGGTTGTCCCCGACGACGGCAAGTTTAGCATACCTGAGGTAGCTAGGAGAGATGGAGTAGACTTTTTGAAACTTCGTACTCGCCGTGGAAATGAAATCGTGGCCGTTCATGTGAAGCATCCAAAGGCATCTGCTACTATGCTGTATTCTCATGGTAATGCTGCTGATTTGGGTCAGATGTTTGAGCTCTTTGTTGAATTGAGCCTCCGTCTTCGTGTTAATCTCATGGGGTAATTTAATTAAGCTTCCCTTTTAATTTCCACAATTTTATTTCCTAGTTTCTCAATTTTGTTTCCGTTATCTGATTCTGAGCTAAAGCTTATCTTTTTTTTTTCTCTTAAGTCCTAATTCTGTTTTAATTTTTTTTTTTGTTCTTTTTCTTGAATCTAGCAATTGGAAAGACACCTTATGCAGTAATTGAGATTTTGTAACTTTCATATTTGGATCACTTTTTTTTTT</genome_strand>
        <mrna_strand>CTTATTTTCAAACCCCCACGCGCCTCTCTTGGCCTCCACGCGCCGCCCTGAAGAAGAAGATAAGGGAAAAGGGGGCTGCTTTATGATTGGTGCAGTAACGATAAGTTACTGTAGATAATGGGAGGAGTGACTTCTTCCATCGCTGCTAAGTTCGCCTTCTTCCCACCGACTCCGCCGTCTTACACGGTTGTCCCCGACGACGGCAAGTTTAGCATACCTGAGGTAGCTAGGAGAGATGGAGTAGACTTTTTGAAACTTCGTACTCGCCGTGGAAATGAAATCGTGGCCGTTCATGTGAAGCATCCAAAGGCATCTGCTACTATGCTGTATTCTCATGGTAATGCTGCTGATTTGGGTCAGATGTTTGAGCTCTTTGTTGAATTGAGCCTCCGTCTTCGTGTTAATCTCATGGGGTAATTTAATTAAGCTTCCCTTTTAATTTCCACAATTTTATTTCCTAGTTTCTCAATTTTGTTTCCGTTATCTGATTCTGAGCTAAAGCTTATCTTTTTTTTTTCTCTTAAGTCCTAATTCTGGTTTAATTTTTTTTTTTGTTCTTTTTCTTGAATCTAGCAATTGGAAAGACACCTTATGCAGTAATTGAGATTTTGTAACTTTCATATTTGGATCACTTTTTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E622579" ref_strand="+" ref_description="SGN-E622579 [72947]">
      <seq>gtgacttcttccatcgctgctaagttcgccttcttcccaccgactccgccgtcttacacggtggttcccgacgacggcaagtttagcatacctgaggtagctaggagagatggagtagactttttgaaacttcgtactcgccgtggaaatgaaatcgtggccgttcatgtgaagcatccaaaggcatctgctactatgctgtattctcatggtaatgctgctgatttgggtcagatgtttgagctctttgttgaattgagcctccgtcttcgtgttaatctcatggggtatgattactctggatatggacaatcaacgtggaaagccatctgaatgtaatacgtacgcggacattgatgcagtatataaatgcctaaaggagcaatatggggtcaaagatgaacagctaatactctatggtcaatctgttggcagtggcccaactgttgatcttgcatcacgagtacccaatttacgaggtgttgttttacatagtccaatattgtctggggtaagagttttgtaccctgtcaagcggacatattggtttgacatatacaagaacattgacaagattagtgcagtgaattgtccggttctggccattcatggcaacagcggatgaagttgttgactactcccacgggaaacagctgtgggagctatgtaaagaaacaatatgaacctttatggataaactggaggtggacattgcaatcttgaactttaccccagcattatttcaaacatctaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="154101" stop="159667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="154401" g_stop="154687" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="154688" i_stop="155759" i_length="1072">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.507" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155760" g_stop="155796" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="325" r_length="38" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155797" i_stop="158563" i_length="2767">
            <donor d_prob="0.930" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="158564" g_stop="158800" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="562" r_length="237" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="158801" i_stop="158886" i_length="86">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="158887" g_stop="158934" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="610" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="158935" i_stop="159226" i_length="292">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="159227" g_stop="159367" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="756" r_length="146" r_score="0.887"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E622579" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E622579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="154401" e_stop="154687"/>
          <exon e_start="155760" e_stop="155796"/>
          <exon e_start="158564" e_stop="158800"/>
          <exon e_start="158887" e_stop="158934"/>
          <exon e_start="159227" e_stop="159367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACTTCTTCCATCGCTGCTAAGTTCGCCTTCTTCCCACCGACTCCGCCGTCTTACACGGTTGTCCCCGACGACGGCAAGTTTAGCATACCTGAGGTAGCTAGGAGAGATGGAGTAGACTTTTTGAAACTTCGTACTCGCCGTGGAAATGAAATCGTGGCCGTTCATGTGAAGCATCCAAAGGCATCTGCTACTATGCTGTATTCTCATGGTAATGCTGCTGATTTGGGTCAGATGTTTGAGCTCTTTGTTGAATTGAGCCTCCGTCTTCGTGTTAATCTCATGGGGTAATTTAATTAAGCTTCCCTTTTAATTTCCACAATTTTATTTCCTAGTTTCTCAATTTTGTTTCCGTTATCTGATTCTGAGCTAAAGCTTATCTTTTTTTTTTCTCTTAAGTCCTAATTCTGTTTTAATTTTTTTTTTTGTTCTTTTTCTTGAATCTAGCAATTGGAAAGACACCTTATGCAGTAATTGAGATTTTGTAACTTTCATATTTGGATCACTTTTTTTTTTCTTGAATAAGAGCAAAGGTTGGAAGTAAAATACTTAAACATTTTTTTGGCCAAGACATTTAGTTGAGCAGAAATAAGACATCTTTAGTAGAACATACTCCAAATTGAGAATTTTGTTGAGATTTTACAAAAGTTTGAAGTTGTTTGCTTTAATTTATTGGGCATGACACAGTCTAATGTGTTTCTGAAACATGACTTACTTTATGCTGTATGTTTTGATTCTCCGGTAAGGTGATAAGCTGTTTTTACTCCGTGTCATGACTTCCCTAGCTTTAAGAATTCTTTTTGAGATTTTACGAAATTGGAGAAAATTTGAGGTTGTTTGTTTTAAACTGTACTGCGTTACACACCGTGCTAATTTTCTGAAATGCGACTAACATTAGGCTATTTATACGGACTCTCCTATAATGTGGAGATGTCATGAAATTGTTATTTTTGTGCTGTATTTTCCTAACATTGATGCTATGGTTGATACATGATTACTAGTGGATAATAATTTGATGAACAAGTAGACGTTAGAAGAAAGCCAAGCTTGAGGTCCAGGAGTCCAATTCAAGCAAGCAGCTTGTTTGGCTTTACTAGTTTACTCTATACTAGATTTTAGTAACTCGTGATCATTTCCTATCTTCTGTGCAATTTGACCTATTGCGAGTTGCATCTGAAAGACCCCCGATGAAGTTAATATTATGGTTGAACCCTCTGGTCTCTCTGTCTTTCTCTAGTTTCGTAAATTGAGCTTTCATTTGCTTCAATTCTAGAACTTTTTTAATGTCAAACTAAACAGTAGGATTGCCGTTTGATTTCTCAGACCCTCCTGACGTTGCTCATATGGTTTCTTGTTTAGGTATGATTACTCTGGATATGGACAATCAAC-TGGAAAGGTTAGATACCTGCTTCCTTGGTCATATATACTTGGCAACTTTTTGTTCCCCGTCTTCATAAAGAAAACAGGGACAAAGAGAAAAACCTCACTGCCTTCATCAGTTTCAGTTTGTTACGTGTATAATAACATTATTAGTAGGAAGAAAAATGACATCTGTTTTGAAAACTGGCTTTATTAACCAGCTCTAACTTGCAATGATACTTGTTAATAGACGAATGTGATGGTAGAACTTTAAATTTTACCTTTTTGGACTTGCATTAAAATTTCGGAATATTAAAAGTAAATGTTGCTTAGATATGGTAGAATCCAGGTGTCAACGTCCTCATCCCTGAGCTATATAATTGTTATATTTGTTTTGATTTATATGTGGGCATATCATATTTATGAAATTCTTATGCAACCTTCATGTAAAAATTGAAGGTTTCTTTCTTAAAATGTTCGTTTGCTCATTTTTGGTAGATTTCTTATTTATTGAAAGAAAAAAAAACATTTTCTCTAGATTTCTTACATGGAAGTTTAGTATAAAGACCATGGATGATGTCAATGTTATATCACCTCTCCTTCAGGCCTCGTATTAATCATTTAACGCCACTTGTCACCCATGTTGCTATATGGTCTTAAACTCCCAACTCCTAAGATTCTCTGAAGCAAAATTTGATGTCAGAGAACAGATATCTTATCCTCTGTAATCGCTCCAGTAATTTGTCACTCCAAATTTGGACAACGATATATAATGCCAAGGGAAATTAATCTCTTAACTGATGCTAATAATGCAAAAGAACCATTTCCAAACGATAAGTTTGGATGTTACTTGTACTCTATTATTACAGATGGTTTTTCATCTATTTTACAACATCAACAAGTCAATTTAATATGGATATCACTTGGGTGATTATGTGATGCGCGAATAAACATAAAGACTGGTATTCTTTTTTGCTCACTTGCAAACATACAAGGACAAGGCAGCTAATACTAAACCAATAAGTGAAGTAGTCGTCGTCTGACCAATCGGCTCAGACACGGGACTTCCCCTACCAGCTATTTTGTCTTGCCCAAAATGGATTGGCTCTCTTAGTTAAGTTGCCCCCCAAACCTGTGGGCTGTGTGTCCAGCTCCGCCTTTATCCTCTGTACCTTCTTTTTGTTTTTGCGTCTGGGGTAGGAATATGTCGTATAATTTGAAAGCATTATTTGCAAGAACACACTAACATTGATTATTTTAAGGTAGCATTGATTACTCGGCAGATATTATAGAACACATCTAATCTGTTTCATTACCACCGCATATGTTACCTAACCTTCAGCTTAGTTTCTCCTTTCTCATTAGAACCACAACTAGAAGCACTAGCTAACCAAACTAGTTCACGTAGTTGGTTCTGTCAAATTATCTGAACCCTGCAATGCACTTTTTGGACTTAATTGCTTATTTTTGTTGTCTTATAATAGTAAGTTTTTTCGTTCCTAGGAAGGAATGCCAAGGTGTAGTATTGGCAATGGGCTTGTGTTTAGTCATAAATTCTCTATAACCCTGACCGGTAACCGGTCTAAGAACAGGAGCTGTTTGTCAATGAACTCTTAAAAGCTTTAACGTTCATTTTTAAATTCTCAAGGAAGAGCTTGCTTGCCTTGTTTGTACAATGACCAGTGATGTATCATCCACTTCTTCATTTAGTGAACTCCCACGACAAACCGTGACTGGAATTTTATTTAAGCCTAGTTCCCTTCATGAAATCCATATATGAAAGAAATATTGTTCTTTTTTTCTTCTTCTGCCTCTGTCACGTTATGTATGTGATATGTTGCAGCACGCATCACATATCTTGATTTTCTTACCAGATTTGGGGAGACCTTTCAGTATGCATTTTGTTGTCCCTCAAGCATCTTTTCAAGGGAATATTGATAATGCTTACTATCTATACATACGATAAGGTGAAAAACATATGCCTTGTCGAAGTTCTGCTGATGCAGGAAGAGCTAGAGCCATTAATATTTTACCAATTTGGGTTGGACTTCCTTAGAAATTTTTTTTAGAAGGAAAAGTTTATATCTGTAATTGGATCGAGGTTTTTGTACATTCTTAAATCTTATGCATGGCTTCCAAACCTAAACAATTCTTTGTTATTACCTCATTTCTTTAGTTTCTAGATGCTGGCAACCATGGTACTTTATTTGGCCATGTGGAACTCAGTGTTATTTAAACCAAAAAGCACAAAAGAACTCTCGAAGTGCAAATAAAGTGTGAGATAATGAAAAAGGTCGCAAAGTGAGAAAATTTCAAATATATATGATTAGTTCAAGCTAATAATTATAAGCATGAATGAAGGATATATATGAACAAAAAAGTTAAAGACAATTCACGTAAAGTAAAGTATTGATTGTTTAGTGTCGCCTCTTCACAAGAGGCTTATTGACTAGGAAGAGTATGTCTTAGAACCTTGATGAAGATTAAGCGAGGCAAAGCGCCTCAACACGTTTTGAGCCTCGCTTCAGGGCTAAGTGCACTTTTGACAACACTGGTCAAACTTTAATTAGAATGTTGCTTTGTGCGTCAAAACATCTTAATCTGTCTTTATATAGTTTTCTGCTTAATGTTATTAACAAATATGTGTGAGACCTGACACAGGTATATAAGAAAGTTTCAGTTCTTAATCTTGGATTTTTCATTCATTGCTTGCTCTAGGAACTCATTTGGTATTCATATGGGTCTATTCCGTTGTTGCTGTTTGTTGTTTAAATTATAATGAAATCATCCTTTCTCTGAAACAGCCATCTGAATGTAATACATACGCGGACATTGATGCAGTATATAAATGCTTAAAGGAGCAATATGAGGTCAAAGATGAACAGTTAATAATCTATGGTCAATCTGTTGGCAGTGGCCCAACTGTTGATCTTGCATCACGAGTACCCAATTTACGAGGTGTTGTTTTACATAGTCCAATATTGTCTGGTGTAAGAGTTTTGTACCCTGTCAAGCGGACATATTGGTTTGACATATACAAGGTAAAACACTCTCAGTGGTTATCTGTACGTAATGCTTTTCCATCTCCACTTGTAAAATCTGATTCCATTACTCCAATTAATTTCAGAACATTGACAAGATTAGTGCAGTGAATTGTCCGGTTCTCGTCATTCATGTAAGTTTTCCTTCTTATCCAATCTTTTATACTTCTACTCCATAATTAGCAATCTCTTTCAAATTCAATCTATTTACAAATACCTCACAGTATAGATGGGTCCAGGATAGATGGCGGGGCAACTGTCCTGTTACTGGTTAATTTAATAACTGTAGATCCTCTATGTGTTTGTACCTCCCAACGATTCTAATTCTTTACCTGTTAATAAACTACTTTAGACACTTTCTGCCTTGTGCCTCCCAAAGGTTCTGTTTTTGAACATTTTACTCAAAGAATTTTAACACGTGTATAGGG-AACAGCGGATGAAGTTGTTGACTACTCCCATGGGAAACAGCTGTGGGAGCTATGTAACGAAA-AATATGAACCTTTGTGGATAAA-TGGAGGTGGACACTGCAATCTTGAACTTTA-CCCAG-AGTATATCAAACATCTAAAG</genome_strand>
        <mrna_strand>GTGACTTCTTCCATCGCTGCTAAGTTCGCCTTCTTCCCACCGACTCCGCCGTCTTACACGGTGGTTCCCGACGACGGCAAGTTTAGCATACCTGAGGTAGCTAGGAGAGATGGAGTAGACTTTTTGAAACTTCGTACTCGCCGTGGAAATGAAATCGTGGCCGTTCATGTGAAGCATCCAAAGGCATCTGCTACTATGCTGTATTCTCATGGTAATGCTGCTGATTTGGGTCAGATGTTTGAGCTCTTTGTTGAATTGAGCCTCCGTCTTCGTGTTAATCTCATGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGATTACTCTGGATATGGACAATCAACGTGGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCTGAATGTAATACGTACGCGGACATTGATGCAGTATATAAATGCCTAAAGGAGCAATATGGGGTCAAAGATGAACAGCTAATACTCTATGGTCAATCTGTTGGCAGTGGCCCAACTGTTGATCTTGCATCACGAGTACCCAATTTACGAGGTGTTGTTTTACATAGTCCAATATTGTCTGGGGTAAGAGTTTTGTACCCTGTCAAGCGGACATATTGGTTTGACATATACAAG......................................................................................AACATTGACAAGATTAGTGCAGTGAATTGTCCGGTTCTGGCCATTCAT....................................................................................................................................................................................................................................................................................................GGCAACAGCGGATGAAGTTGTTGACTACTCCCACGGGAAACAGCTGTGGGAGCTATGTAAAGAAACAATATGAACCTTTATGGATAAACTGGAGGTGGACATTGCAATCTTGAACTTTACCCCAGCATTATTTCAAACATCTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E370109" ref_strand="+" ref_description="SGN-E370109 [TUS-26-H20]">
      <seq>gacgacggcaagtttagcatacctgaggtagctaggagagatggagtagactttttgaaacttcgtactcgccgtggaaatgaaatcgtggccgttcatgtgaagcatccaaaggcatctgctactatgctgtattctcatggtaatgctgctgatttgggtcagatgtttgagctctttgttgaattgagcctccgtcttcgtgttaatctcatggggtatgattactctggatatggacaatcaactggaaagccatctgaatgtaatacatacgcggacattgatgcagtatataaatgcttaaaggagcaatatgaggtcaaagatgaacagttaataatctatggtcaatctgttggcagtggcccaactgttgatcttgcatcacgagtacccaatttacgaggtgttgttttacatagtccaatattgtctggtgtaagagttttgtaccctgtcaagcggacatattggtttgacatatacaagaacattgacaagattagtgcagtgaattgtccggttctcgtcattcatggaacagcggatgaagttgttgactactcccatgggaaacagctgtgggagctatgtaacgaaaaatatgaacctttgtggataaatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="154170" stop="159616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="154470" g_stop="154687" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="154688" i_stop="155759" i_length="1072">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.507" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155760" g_stop="155796" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="255" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155797" i_stop="158563" i_length="2767">
            <donor d_prob="0.930" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="158564" g_stop="158800" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="492" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="158801" i_stop="158886" i_length="86">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="158887" g_stop="158934" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="540" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="158935" i_stop="159226" i_length="292">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="159227" g_stop="159316" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="630" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E370109" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="154470" e_stop="154687"/>
          <exon e_start="155760" e_stop="155796"/>
          <exon e_start="158564" e_stop="158800"/>
          <exon e_start="158887" e_stop="158934"/>
          <exon e_start="159227" e_stop="159316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGACGGCAAGTTTAGCATACCTGAGGTAGCTAGGAGAGATGGAGTAGACTTTTTGAAACTTCGTACTCGCCGTGGAAATGAAATCGTGGCCGTTCATGTGAAGCATCCAAAGGCATCTGCTACTATGCTGTATTCTCATGGTAATGCTGCTGATTTGGGTCAGATGTTTGAGCTCTTTGTTGAATTGAGCCTCCGTCTTCGTGTTAATCTCATGGGGTAATTTAATTAAGCTTCCCTTTTAATTTCCACAATTTTATTTCCTAGTTTCTCAATTTTGTTTCCGTTATCTGATTCTGAGCTAAAGCTTATCTTTTTTTTTTCTCTTAAGTCCTAATTCTGTTTTAATTTTTTTTTTTGTTCTTTTTCTTGAATCTAGCAATTGGAAAGACACCTTATGCAGTAATTGAGATTTTGTAACTTTCATATTTGGATCACTTTTTTTTTTCTTGAATAAGAGCAAAGGTTGGAAGTAAAATACTTAAACATTTTTTTGGCCAAGACATTTAGTTGAGCAGAAATAAGACATCTTTAGTAGAACATACTCCAAATTGAGAATTTTGTTGAGATTTTACAAAAGTTTGAAGTTGTTTGCTTTAATTTATTGGGCATGACACAGTCTAATGTGTTTCTGAAACATGACTTACTTTATGCTGTATGTTTTGATTCTCCGGTAAGGTGATAAGCTGTTTTTACTCCGTGTCATGACTTCCCTAGCTTTAAGAATTCTTTTTGAGATTTTACGAAATTGGAGAAAATTTGAGGTTGTTTGTTTTAAACTGTACTGCGTTACACACCGTGCTAATTTTCTGAAATGCGACTAACATTAGGCTATTTATACGGACTCTCCTATAATGTGGAGATGTCATGAAATTGTTATTTTTGTGCTGTATTTTCCTAACATTGATGCTATGGTTGATACATGATTACTAGTGGATAATAATTTGATGAACAAGTAGACGTTAGAAGAAAGCCAAGCTTGAGGTCCAGGAGTCCAATTCAAGCAAGCAGCTTGTTTGGCTTTACTAGTTTACTCTATACTAGATTTTAGTAACTCGTGATCATTTCCTATCTTCTGTGCAATTTGACCTATTGCGAGTTGCATCTGAAAGACCCCCGATGAAGTTAATATTATGGTTGAACCCTCTGGTCTCTCTGTCTTTCTCTAGTTTCGTAAATTGAGCTTTCATTTGCTTCAATTCTAGAACTTTTTTAATGTCAAACTAAACAGTAGGATTGCCGTTTGATTTCTCAGACCCTCCTGACGTTGCTCATATGGTTTCTTGTTTAGGTATGATTACTCTGGATATGGACAATCAACTGGAAAGGTTAGATACCTGCTTCCTTGGTCATATATACTTGGCAACTTTTTGTTCCCCGTCTTCATAAAGAAAACAGGGACAAAGAGAAAAACCTCACTGCCTTCATCAGTTTCAGTTTGTTACGTGTATAATAACATTATTAGTAGGAAGAAAAATGACATCTGTTTTGAAAACTGGCTTTATTAACCAGCTCTAACTTGCAATGATACTTGTTAATAGACGAATGTGATGGTAGAACTTTAAATTTTACCTTTTTGGACTTGCATTAAAATTTCGGAATATTAAAAGTAAATGTTGCTTAGATATGGTAGAATCCAGGTGTCAACGTCCTCATCCCTGAGCTATATAATTGTTATATTTGTTTTGATTTATATGTGGGCATATCATATTTATGAAATTCTTATGCAACCTTCATGTAAAAATTGAAGGTTTCTTTCTTAAAATGTTCGTTTGCTCATTTTTGGTAGATTTCTTATTTATTGAAAGAAAAAAAAACATTTTCTCTAGATTTCTTACATGGAAGTTTAGTATAAAGACCATGGATGATGTCAATGTTATATCACCTCTCCTTCAGGCCTCGTATTAATCATTTAACGCCACTTGTCACCCATGTTGCTATATGGTCTTAAACTCCCAACTCCTAAGATTCTCTGAAGCAAAATTTGATGTCAGAGAACAGATATCTTATCCTCTGTAATCGCTCCAGTAATTTGTCACTCCAAATTTGGACAACGATATATAATGCCAAGGGAAATTAATCTCTTAACTGATGCTAATAATGCAAAAGAACCATTTCCAAACGATAAGTTTGGATGTTACTTGTACTCTATTATTACAGATGGTTTTTCATCTATTTTACAACATCAACAAGTCAATTTAATATGGATATCACTTGGGTGATTATGTGATGCGCGAATAAACATAAAGACTGGTATTCTTTTTTGCTCACTTGCAAACATACAAGGACAAGGCAGCTAATACTAAACCAATAAGTGAAGTAGTCGTCGTCTGACCAATCGGCTCAGACACGGGACTTCCCCTACCAGCTATTTTGTCTTGCCCAAAATGGATTGGCTCTCTTAGTTAAGTTGCCCCCCAAACCTGTGGGCTGTGTGTCCAGCTCCGCCTTTATCCTCTGTACCTTCTTTTTGTTTTTGCGTCTGGGGTAGGAATATGTCGTATAATTTGAAAGCATTATTTGCAAGAACACACTAACATTGATTATTTTAAGGTAGCATTGATTACTCGGCAGATATTATAGAACACATCTAATCTGTTTCATTACCACCGCATATGTTACCTAACCTTCAGCTTAGTTTCTCCTTTCTCATTAGAACCACAACTAGAAGCACTAGCTAACCAAACTAGTTCACGTAGTTGGTTCTGTCAAATTATCTGAACCCTGCAATGCACTTTTTGGACTTAATTGCTTATTTTTGTTGTCTTATAATAGTAAGTTTTTTCGTTCCTAGGAAGGAATGCCAAGGTGTAGTATTGGCAATGGGCTTGTGTTTAGTCATAAATTCTCTATAACCCTGACCGGTAACCGGTCTAAGAACAGGAGCTGTTTGTCAATGAACTCTTAAAAGCTTTAACGTTCATTTTTAAATTCTCAAGGAAGAGCTTGCTTGCCTTGTTTGTACAATGACCAGTGATGTATCATCCACTTCTTCATTTAGTGAACTCCCACGACAAACCGTGACTGGAATTTTATTTAAGCCTAGTTCCCTTCATGAAATCCATATATGAAAGAAATATTGTTCTTTTTTTCTTCTTCTGCCTCTGTCACGTTATGTATGTGATATGTTGCAGCACGCATCACATATCTTGATTTTCTTACCAGATTTGGGGAGACCTTTCAGTATGCATTTTGTTGTCCCTCAAGCATCTTTTCAAGGGAATATTGATAATGCTTACTATCTATACATACGATAAGGTGAAAAACATATGCCTTGTCGAAGTTCTGCTGATGCAGGAAGAGCTAGAGCCATTAATATTTTACCAATTTGGGTTGGACTTCCTTAGAAATTTTTTTTAGAAGGAAAAGTTTATATCTGTAATTGGATCGAGGTTTTTGTACATTCTTAAATCTTATGCATGGCTTCCAAACCTAAACAATTCTTTGTTATTACCTCATTTCTTTAGTTTCTAGATGCTGGCAACCATGGTACTTTATTTGGCCATGTGGAACTCAGTGTTATTTAAACCAAAAAGCACAAAAGAACTCTCGAAGTGCAAATAAAGTGTGAGATAATGAAAAAGGTCGCAAAGTGAGAAAATTTCAAATATATATGATTAGTTCAAGCTAATAATTATAAGCATGAATGAAGGATATATATGAACAAAAAAGTTAAAGACAATTCACGTAAAGTAAAGTATTGATTGTTTAGTGTCGCCTCTTCACAAGAGGCTTATTGACTAGGAAGAGTATGTCTTAGAACCTTGATGAAGATTAAGCGAGGCAAAGCGCCTCAACACGTTTTGAGCCTCGCTTCAGGGCTAAGTGCACTTTTGACAACACTGGTCAAACTTTAATTAGAATGTTGCTTTGTGCGTCAAAACATCTTAATCTGTCTTTATATAGTTTTCTGCTTAATGTTATTAACAAATATGTGTGAGACCTGACACAGGTATATAAGAAAGTTTCAGTTCTTAATCTTGGATTTTTCATTCATTGCTTGCTCTAGGAACTCATTTGGTATTCATATGGGTCTATTCCGTTGTTGCTGTTTGTTGTTTAAATTATAATGAAATCATCCTTTCTCTGAAACAGCCATCTGAATGTAATACATACGCGGACATTGATGCAGTATATAAATGCTTAAAGGAGCAATATGAGGTCAAAGATGAACAGTTAATAATCTATGGTCAATCTGTTGGCAGTGGCCCAACTGTTGATCTTGCATCACGAGTACCCAATTTACGAGGTGTTGTTTTACATAGTCCAATATTGTCTGGTGTAAGAGTTTTGTACCCTGTCAAGCGGACATATTGGTTTGACATATACAAGGTAAAACACTCTCAGTGGTTATCTGTACGTAATGCTTTTCCATCTCCACTTGTAAAATCTGATTCCATTACTCCAATTAATTTCAGAACATTGACAAGATTAGTGCAGTGAATTGTCCGGTTCTCGTCATTCATGTAAGTTTTCCTTCTTATCCAATCTTTTATACTTCTACTCCATAATTAGCAATCTCTTTCAAATTCAATCTATTTACAAATACCTCACAGTATAGATGGGTCCAGGATAGATGGCGGGGCAACTGTCCTGTTACTGGTTAATTTAATAACTGTAGATCCTCTATGTGTTTGTACCTCCCAACGATTCTAATTCTTTACCTGTTAATAAACTACTTTAGACACTTTCTGCCTTGTGCCTCCCAAAGGTTCTGTTTTTGAACATTTTACTCAAAGAATTTTAACACGTGTATAGGGAACAGCGGATGAAGTTGTTGACTACTCCCATGGGAAACAGCTGTGGGAGCTATGTAACGAAAAATATGAACCTTTGTGGATAAATGGA</genome_strand>
        <mrna_strand>GACGACGGCAAGTTTAGCATACCTGAGGTAGCTAGGAGAGATGGAGTAGACTTTTTGAAACTTCGTACTCGCCGTGGAAATGAAATCGTGGCCGTTCATGTGAAGCATCCAAAGGCATCTGCTACTATGCTGTATTCTCATGGTAATGCTGCTGATTTGGGTCAGATGTTTGAGCTCTTTGTTGAATTGAGCCTCCGTCTTCGTGTTAATCTCATGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGATTACTCTGGATATGGACAATCAACTGGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCTGAATGTAATACATACGCGGACATTGATGCAGTATATAAATGCTTAAAGGAGCAATATGAGGTCAAAGATGAACAGTTAATAATCTATGGTCAATCTGTTGGCAGTGGCCCAACTGTTGATCTTGCATCACGAGTACCCAATTTACGAGGTGTTGTTTTACATAGTCCAATATTGTCTGGTGTAAGAGTTTTGTACCCTGTCAAGCGGACATATTGGTTTGACATATACAAG......................................................................................AACATTGACAAGATTAGTGCAGTGAATTGTCCGGTTCTCGTCATTCAT....................................................................................................................................................................................................................................................................................................GGAACAGCGGATGAAGTTGTTGACTACTCCCATGGGAAACAGCTGTGGGAGCTATGTAACGAAAAATATGAACCTTTGTGGATAAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E264492" ref_strand="+" ref_description="SGN-E264492 [cLEG-67-G3]">
      <seq>acgacggcaagtttagcatacctgaggtagctaggagagatggagtagactttttgaaacttcgtactcgccgtggaaatgaaatcgtggccgttcatgtgaagcatccaaaggcatctgctactatgctgtattctcatggtaatgctgctgatttgggtcagatgtttgagctctttgttgaattgagcctccgtcttcgtgttaatctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="154171" stop="154983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="154471" g_stop="154683" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E264492" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>213</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="154471" e_stop="154683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGACGGCAAGTTTAGCATACCTGAGGTAGCTAGGAGAGATGGAGTAGACTTTTTGAAACTTCGTACTCGCCGTGGAAATGAAATCGTGGCCGTTCATGTGAAGCATCCAAAGGCATCTGCTACTATGCTGTATTCTCATGGTAATGCTGCTGATTTGGGTCAGATGTTTGAGCTCTTTGTTGAATTGAGCCTCCGTCTTCGTGTTAATCTCA</genome_strand>
        <mrna_strand>ACGACGGCAAGTTTAGCATACCTGAGGTAGCTAGGAGAGATGGAGTAGACTTTTTGAAACTTCGTACTCGCCGTGGAAATGAAATCGTGGCCGTTCATGTGAAGCATCCAAAGGCATCTGCTACTATGCTGTATTCTCATGGTAATGCTGCTGATTTGGGTCAGATGTTTGAGCTCTTTGTTGAATTGAGCCTCCGTCTTCGTGTTAATCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258916" ref_strand="+" ref_description="SGN-E258916 [cLEG-41-O8]">
      <seq>cgcatacctgaggtagctaggagagatggagtagactttttgaaacttcgtactcgccgtggaaatgaaatcgtggccgttcatgtgaagcatccaaaggcatctgctactatgctgtattctcatggtaatgctgctgatttgggtcagatgtttgagctctttgttgaattgagcctccgtcttcgtgttaatctcatggggtatgattactctggatatggacaatcaactggaaagccatctgaatgtaatacatacgcggacattgatgcagtatataaatgcttaaaggagcaatatgaggtcaaagatgaacagttaataatctatggtcaatctgttggcagtggcccaactgttgatcttgcatcacgagtacccaatttacgaggtgttgttttacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="154186" stop="159031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="154485" g_stop="154687" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="154688" i_stop="155759" i_length="1072">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.507" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="155760" g_stop="155796" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="240" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="155797" i_stop="158563" i_length="2767">
            <donor d_prob="0.930" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="158564" g_stop="158731" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="408" r_length="168" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E258916" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="154485" e_stop="154687"/>
          <exon e_start="155760" e_stop="155796"/>
          <exon e_start="158564" e_stop="158731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATACCTGAGGTAGCTAGGAGAGATGGAGTAGACTTTTTGAAACTTCGTACTCGCCGTGGAAATGAAATCGTGGCCGTTCATGTGAAGCATCCAAAGGCATCTGCTACTATGCTGTATTCTCATGGTAATGCTGCTGATTTGGGTCAGATGTTTGAGCTCTTTGTTGAATTGAGCCTCCGTCTTCGTGTTAATCTCATGGGGTAATTTAATTAAGCTTCCCTTTTAATTTCCACAATTTTATTTCCTAGTTTCTCAATTTTGTTTCCGTTATCTGATTCTGAGCTAAAGCTTATCTTTTTTTTTTCTCTTAAGTCCTAATTCTGTTTTAATTTTTTTTTTTGTTCTTTTTCTTGAATCTAGCAATTGGAAAGACACCTTATGCAGTAATTGAGATTTTGTAACTTTCATATTTGGATCACTTTTTTTTTTCTTGAATAAGAGCAAAGGTTGGAAGTAAAATACTTAAACATTTTTTTGGCCAAGACATTTAGTTGAGCAGAAATAAGACATCTTTAGTAGAACATACTCCAAATTGAGAATTTTGTTGAGATTTTACAAAAGTTTGAAGTTGTTTGCTTTAATTTATTGGGCATGACACAGTCTAATGTGTTTCTGAAACATGACTTACTTTATGCTGTATGTTTTGATTCTCCGGTAAGGTGATAAGCTGTTTTTACTCCGTGTCATGACTTCCCTAGCTTTAAGAATTCTTTTTGAGATTTTACGAAATTGGAGAAAATTTGAGGTTGTTTGTTTTAAACTGTACTGCGTTACACACCGTGCTAATTTTCTGAAATGCGACTAACATTAGGCTATTTATACGGACTCTCCTATAATGTGGAGATGTCATGAAATTGTTATTTTTGTGCTGTATTTTCCTAACATTGATGCTATGGTTGATACATGATTACTAGTGGATAATAATTTGATGAACAAGTAGACGTTAGAAGAAAGCCAAGCTTGAGGTCCAGGAGTCCAATTCAAGCAAGCAGCTTGTTTGGCTTTACTAGTTTACTCTATACTAGATTTTAGTAACTCGTGATCATTTCCTATCTTCTGTGCAATTTGACCTATTGCGAGTTGCATCTGAAAGACCCCCGATGAAGTTAATATTATGGTTGAACCCTCTGGTCTCTCTGTCTTTCTCTAGTTTCGTAAATTGAGCTTTCATTTGCTTCAATTCTAGAACTTTTTTAATGTCAAACTAAACAGTAGGATTGCCGTTTGATTTCTCAGACCCTCCTGACGTTGCTCATATGGTTTCTTGTTTAGGTATGATTACTCTGGATATGGACAATCAACTGGAAAGGTTAGATACCTGCTTCCTTGGTCATATATACTTGGCAACTTTTTGTTCCCCGTCTTCATAAAGAAAACAGGGACAAAGAGAAAAACCTCACTGCCTTCATCAGTTTCAGTTTGTTACGTGTATAATAACATTATTAGTAGGAAGAAAAATGACATCTGTTTTGAAAACTGGCTTTATTAACCAGCTCTAACTTGCAATGATACTTGTTAATAGACGAATGTGATGGTAGAACTTTAAATTTTACCTTTTTGGACTTGCATTAAAATTTCGGAATATTAAAAGTAAATGTTGCTTAGATATGGTAGAATCCAGGTGTCAACGTCCTCATCCCTGAGCTATATAATTGTTATATTTGTTTTGATTTATATGTGGGCATATCATATTTATGAAATTCTTATGCAACCTTCATGTAAAAATTGAAGGTTTCTTTCTTAAAATGTTCGTTTGCTCATTTTTGGTAGATTTCTTATTTATTGAAAGAAAAAAAAACATTTTCTCTAGATTTCTTACATGGAAGTTTAGTATAAAGACCATGGATGATGTCAATGTTATATCACCTCTCCTTCAGGCCTCGTATTAATCATTTAACGCCACTTGTCACCCATGTTGCTATATGGTCTTAAACTCCCAACTCCTAAGATTCTCTGAAGCAAAATTTGATGTCAGAGAACAGATATCTTATCCTCTGTAATCGCTCCAGTAATTTGTCACTCCAAATTTGGACAACGATATATAATGCCAAGGGAAATTAATCTCTTAACTGATGCTAATAATGCAAAAGAACCATTTCCAAACGATAAGTTTGGATGTTACTTGTACTCTATTATTACAGATGGTTTTTCATCTATTTTACAACATCAACAAGTCAATTTAATATGGATATCACTTGGGTGATTATGTGATGCGCGAATAAACATAAAGACTGGTATTCTTTTTTGCTCACTTGCAAACATACAAGGACAAGGCAGCTAATACTAAACCAATAAGTGAAGTAGTCGTCGTCTGACCAATCGGCTCAGACACGGGACTTCCCCTACCAGCTATTTTGTCTTGCCCAAAATGGATTGGCTCTCTTAGTTAAGTTGCCCCCCAAACCTGTGGGCTGTGTGTCCAGCTCCGCCTTTATCCTCTGTACCTTCTTTTTGTTTTTGCGTCTGGGGTAGGAATATGTCGTATAATTTGAAAGCATTATTTGCAAGAACACACTAACATTGATTATTTTAAGGTAGCATTGATTACTCGGCAGATATTATAGAACACATCTAATCTGTTTCATTACCACCGCATATGTTACCTAACCTTCAGCTTAGTTTCTCCTTTCTCATTAGAACCACAACTAGAAGCACTAGCTAACCAAACTAGTTCACGTAGTTGGTTCTGTCAAATTATCTGAACCCTGCAATGCACTTTTTGGACTTAATTGCTTATTTTTGTTGTCTTATAATAGTAAGTTTTTTCGTTCCTAGGAAGGAATGCCAAGGTGTAGTATTGGCAATGGGCTTGTGTTTAGTCATAAATTCTCTATAACCCTGACCGGTAACCGGTCTAAGAACAGGAGCTGTTTGTCAATGAACTCTTAAAAGCTTTAACGTTCATTTTTAAATTCTCAAGGAAGAGCTTGCTTGCCTTGTTTGTACAATGACCAGTGATGTATCATCCACTTCTTCATTTAGTGAACTCCCACGACAAACCGTGACTGGAATTTTATTTAAGCCTAGTTCCCTTCATGAAATCCATATATGAAAGAAATATTGTTCTTTTTTTCTTCTTCTGCCTCTGTCACGTTATGTATGTGATATGTTGCAGCACGCATCACATATCTTGATTTTCTTACCAGATTTGGGGAGACCTTTCAGTATGCATTTTGTTGTCCCTCAAGCATCTTTTCAAGGGAATATTGATAATGCTTACTATCTATACATACGATAAGGTGAAAAACATATGCCTTGTCGAAGTTCTGCTGATGCAGGAAGAGCTAGAGCCATTAATATTTTACCAATTTGGGTTGGACTTCCTTAGAAATTTTTTTTAGAAGGAAAAGTTTATATCTGTAATTGGATCGAGGTTTTTGTACATTCTTAAATCTTATGCATGGCTTCCAAACCTAAACAATTCTTTGTTATTACCTCATTTCTTTAGTTTCTAGATGCTGGCAACCATGGTACTTTATTTGGCCATGTGGAACTCAGTGTTATTTAAACCAAAAAGCACAAAAGAACTCTCGAAGTGCAAATAAAGTGTGAGATAATGAAAAAGGTCGCAAAGTGAGAAAATTTCAAATATATATGATTAGTTCAAGCTAATAATTATAAGCATGAATGAAGGATATATATGAACAAAAAAGTTAAAGACAATTCACGTAAAGTAAAGTATTGATTGTTTAGTGTCGCCTCTTCACAAGAGGCTTATTGACTAGGAAGAGTATGTCTTAGAACCTTGATGAAGATTAAGCGAGGCAAAGCGCCTCAACACGTTTTGAGCCTCGCTTCAGGGCTAAGTGCACTTTTGACAACACTGGTCAAACTTTAATTAGAATGTTGCTTTGTGCGTCAAAACATCTTAATCTGTCTTTATATAGTTTTCTGCTTAATGTTATTAACAAATATGTGTGAGACCTGACACAGGTATATAAGAAAGTTTCAGTTCTTAATCTTGGATTTTTCATTCATTGCTTGCTCTAGGAACTCATTTGGTATTCATATGGGTCTATTCCGTTGTTGCTGTTTGTTGTTTAAATTATAATGAAATCATCCTTTCTCTGAAACAGCCATCTGAATGTAATACATACGCGGACATTGATGCAGTATATAAATGCTTAAAGGAGCAATATGAGGTCAAAGATGAACAGTTAATAATCTATGGTCAATCTGTTGGCAGTGGCCCAACTGTTGATCTTGCATCACGAGTACCCAATTTACGAGGTGTTGTTTTACAT</genome_strand>
        <mrna_strand>CGCATACCTGAGGTAGCTAGGAGAGATGGAGTAGACTTTTTGAAACTTCGTACTCGCCGTGGAAATGAAATCGTGGCCGTTCATGTGAAGCATCCAAAGGCATCTGCTACTATGCTGTATTCTCATGGTAATGCTGCTGATTTGGGTCAGATGTTTGAGCTCTTTGTTGAATTGAGCCTCCGTCTTCGTGTTAATCTCATGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGATTACTCTGGATATGGACAATCAACTGGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCTGAATGTAATACATACGCGGACATTGATGCAGTATATAAATGCTTAAAGGAGCAATATGAGGTCAAAGATGAACAGTTAATAATCTATGGTCAATCTGTTGGCAGTGGCCCAACTGTTGATCTTGCATCACGAGTACCCAATTTACGAGGTGTTGTTTTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E317222" ref_strand="+" ref_description="SGN-E317222 [cTOA-28-G16]">
      <seq>atatggacaatcaactggaaagccatctgaatgtaatacatacgcggacattgatgcagtatataaatgcttaaaggagcaatatgaggtcaaagatgaacagttaataatctatggtcaatctgttggcagtggcccaactgttgatcttgcatcacgagtacccaatttacgaggtgttgttttacatagtccaatattgtctggtgtaagagttttgtaccctgtcaagcggacatattggtttgacatatacaagaacattgacaagattagtgcagtgaattgtccggttctcgtcattcatggaacagcggatgaagttgttgactactcccatgggaaacagctgtgggagctatgtaacgaaaaatatgaacctttgtggataaatggaggtggacactgcaatcttgaactttacccagagtatatcaaacatctaaagaaatttgttcttggtcttggcaaaccgaagcctgctgctaatggcccccagaaagcatcaacagagtctgaaaatcagagtaaacctgccgaaagtggtagtaccaccgacacgtttgacctgaaacctgatcttcctgaaatttcaaggaacagtttggatagtcgacttgaaaagactaagaagtcaaacaaacctgagaagtcgcggatgagcacagatcgtgttgacaggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="155475" stop="159860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="155775" g_stop="155796" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="155797" i_stop="158563" i_length="2767">
            <donor d_prob="0.930" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="158564" g_stop="158800" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="259" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="158801" i_stop="158886" i_length="86">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="158887" g_stop="158934" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="307" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="158935" i_stop="159226" i_length="292">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="159227" g_stop="159604" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="685" r_length="378" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E317222" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="155775" e_stop="155796"/>
          <exon e_start="158564" e_stop="158800"/>
          <exon e_start="158887" e_stop="158934"/>
          <exon e_start="159227" e_stop="159604"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGACAATCAACTGGAAAGGTTAGATACCTGCTTCCTTGGTCATATATACTTGGCAACTTTTTGTTCCCCGTCTTCATAAAGAAAACAGGGACAAAGAGAAAAACCTCACTGCCTTCATCAGTTTCAGTTTGTTACGTGTATAATAACATTATTAGTAGGAAGAAAAATGACATCTGTTTTGAAAACTGGCTTTATTAACCAGCTCTAACTTGCAATGATACTTGTTAATAGACGAATGTGATGGTAGAACTTTAAATTTTACCTTTTTGGACTTGCATTAAAATTTCGGAATATTAAAAGTAAATGTTGCTTAGATATGGTAGAATCCAGGTGTCAACGTCCTCATCCCTGAGCTATATAATTGTTATATTTGTTTTGATTTATATGTGGGCATATCATATTTATGAAATTCTTATGCAACCTTCATGTAAAAATTGAAGGTTTCTTTCTTAAAATGTTCGTTTGCTCATTTTTGGTAGATTTCTTATTTATTGAAAGAAAAAAAAACATTTTCTCTAGATTTCTTACATGGAAGTTTAGTATAAAGACCATGGATGATGTCAATGTTATATCACCTCTCCTTCAGGCCTCGTATTAATCATTTAACGCCACTTGTCACCCATGTTGCTATATGGTCTTAAACTCCCAACTCCTAAGATTCTCTGAAGCAAAATTTGATGTCAGAGAACAGATATCTTATCCTCTGTAATCGCTCCAGTAATTTGTCACTCCAAATTTGGACAACGATATATAATGCCAAGGGAAATTAATCTCTTAACTGATGCTAATAATGCAAAAGAACCATTTCCAAACGATAAGTTTGGATGTTACTTGTACTCTATTATTACAGATGGTTTTTCATCTATTTTACAACATCAACAAGTCAATTTAATATGGATATCACTTGGGTGATTATGTGATGCGCGAATAAACATAAAGACTGGTATTCTTTTTTGCTCACTTGCAAACATACAAGGACAAGGCAGCTAATACTAAACCAATAAGTGAAGTAGTCGTCGTCTGACCAATCGGCTCAGACACGGGACTTCCCCTACCAGCTATTTTGTCTTGCCCAAAATGGATTGGCTCTCTTAGTTAAGTTGCCCCCCAAACCTGTGGGCTGTGTGTCCAGCTCCGCCTTTATCCTCTGTACCTTCTTTTTGTTTTTGCGTCTGGGGTAGGAATATGTCGTATAATTTGAAAGCATTATTTGCAAGAACACACTAACATTGATTATTTTAAGGTAGCATTGATTACTCGGCAGATATTATAGAACACATCTAATCTGTTTCATTACCACCGCATATGTTACCTAACCTTCAGCTTAGTTTCTCCTTTCTCATTAGAACCACAACTAGAAGCACTAGCTAACCAAACTAGTTCACGTAGTTGGTTCTGTCAAATTATCTGAACCCTGCAATGCACTTTTTGGACTTAATTGCTTATTTTTGTTGTCTTATAATAGTAAGTTTTTTCGTTCCTAGGAAGGAATGCCAAGGTGTAGTATTGGCAATGGGCTTGTGTTTAGTCATAAATTCTCTATAACCCTGACCGGTAACCGGTCTAAGAACAGGAGCTGTTTGTCAATGAACTCTTAAAAGCTTTAACGTTCATTTTTAAATTCTCAAGGAAGAGCTTGCTTGCCTTGTTTGTACAATGACCAGTGATGTATCATCCACTTCTTCATTTAGTGAACTCCCACGACAAACCGTGACTGGAATTTTATTTAAGCCTAGTTCCCTTCATGAAATCCATATATGAAAGAAATATTGTTCTTTTTTTCTTCTTCTGCCTCTGTCACGTTATGTATGTGATATGTTGCAGCACGCATCACATATCTTGATTTTCTTACCAGATTTGGGGAGACCTTTCAGTATGCATTTTGTTGTCCCTCAAGCATCTTTTCAAGGGAATATTGATAATGCTTACTATCTATACATACGATAAGGTGAAAAACATATGCCTTGTCGAAGTTCTGCTGATGCAGGAAGAGCTAGAGCCATTAATATTTTACCAATTTGGGTTGGACTTCCTTAGAAATTTTTTTTAGAAGGAAAAGTTTATATCTGTAATTGGATCGAGGTTTTTGTACATTCTTAAATCTTATGCATGGCTTCCAAACCTAAACAATTCTTTGTTATTACCTCATTTCTTTAGTTTCTAGATGCTGGCAACCATGGTACTTTATTTGGCCATGTGGAACTCAGTGTTATTTAAACCAAAAAGCACAAAAGAACTCTCGAAGTGCAAATAAAGTGTGAGATAATGAAAAAGGTCGCAAAGTGAGAAAATTTCAAATATATATGATTAGTTCAAGCTAATAATTATAAGCATGAATGAAGGATATATATGAACAAAAAAGTTAAAGACAATTCACGTAAAGTAAAGTATTGATTGTTTAGTGTCGCCTCTTCACAAGAGGCTTATTGACTAGGAAGAGTATGTCTTAGAACCTTGATGAAGATTAAGCGAGGCAAAGCGCCTCAACACGTTTTGAGCCTCGCTTCAGGGCTAAGTGCACTTTTGACAACACTGGTCAAACTTTAATTAGAATGTTGCTTTGTGCGTCAAAACATCTTAATCTGTCTTTATATAGTTTTCTGCTTAATGTTATTAACAAATATGTGTGAGACCTGACACAGGTATATAAGAAAGTTTCAGTTCTTAATCTTGGATTTTTCATTCATTGCTTGCTCTAGGAACTCATTTGGTATTCATATGGGTCTATTCCGTTGTTGCTGTTTGTTGTTTAAATTATAATGAAATCATCCTTTCTCTGAAACAGCCATCTGAATGTAATACATACGCGGACATTGATGCAGTATATAAATGCTTAAAGGAGCAATATGAGGTCAAAGATGAACAGTTAATAATCTATGGTCAATCTGTTGGCAGTGGCCCAACTGTTGATCTTGCATCACGAGTACCCAATTTACGAGGTGTTGTTTTACATAGTCCAATATTGTCTGGTGTAAGAGTTTTGTACCCTGTCAAGCGGACATATTGGTTTGACATATACAAGGTAAAACACTCTCAGTGGTTATCTGTACGTAATGCTTTTCCATCTCCACTTGTAAAATCTGATTCCATTACTCCAATTAATTTCAGAACATTGACAAGATTAGTGCAGTGAATTGTCCGGTTCTCGTCATTCATGTAAGTTTTCCTTCTTATCCAATCTTTTATACTTCTACTCCATAATTAGCAATCTCTTTCAAATTCAATCTATTTACAAATACCTCACAGTATAGATGGGTCCAGGATAGATGGCGGGGCAACTGTCCTGTTACTGGTTAATTTAATAACTGTAGATCCTCTATGTGTTTGTACCTCCCAACGATTCTAATTCTTTACCTGTTAATAAACTACTTTAGACACTTTCTGCCTTGTGCCTCCCAAAGGTTCTGTTTTTGAACATTTTACTCAAAGAATTTTAACACGTGTATAGGGAACAGCGGATGAAGTTGTTGACTACTCCCATGGGAAACAGCTGTGGGAGCTATGTAACGAAAAATATGAACCTTTGTGGATAAATGGAGGTGGACACTGCAATCTTGAACTTTACCCAGAGTATATCAAACATCTAAAGAAATTTGTTCTTGGTCTTGGCAAACCGAAGCCTGCTGCTAATGGCCCCCAGAAAGCATCAACAGAGTCTGAAAATCAGAGTAAACCTGCCGAAAGTGGTAGTACCACCGACACGTTTGACCTGAAACCTGATCTTCCTGAAATTTCAAGGAACAGTTTGGATAGTCGACTTGAAAAGACTAAGAAGTCAAACAAACCTGAGAAGTCGCGGATGAGCACAGATCGTGTTGACAGGTTT</genome_strand>
        <mrna_strand>ATATGGACAATCAACTGGAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCTGAATGTAATACATACGCGGACATTGATGCAGTATATAAATGCTTAAAGGAGCAATATGAGGTCAAAGATGAACAGTTAATAATCTATGGTCAATCTGTTGGCAGTGGCCCAACTGTTGATCTTGCATCACGAGTACCCAATTTACGAGGTGTTGTTTTACATAGTCCAATATTGTCTGGTGTAAGAGTTTTGTACCCTGTCAAGCGGACATATTGGTTTGACATATACAAG......................................................................................AACATTGACAAGATTAGTGCAGTGAATTGTCCGGTTCTCGTCATTCAT....................................................................................................................................................................................................................................................................................................GGAACAGCGGATGAAGTTGTTGACTACTCCCATGGGAAACAGCTGTGGGAGCTATGTAACGAAAAATATGAACCTTTGTGGATAAATGGAGGTGGACACTGCAATCTTGAACTTTACCCAGAGTATATCAAACATCTAAAGAAATTTGTTCTTGGTCTTGGCAAACCGAAGCCTGCTGCTAATGGCCCCCAGAAAGCATCAACAGAGTCTGAAAATCAGAGTAAACCTGCCGAAAGTGGTAGTACCACCGACACGTTTGACCTGAAACCTGATCTTCCTGAAATTTCAAGGAACAGTTTGGATAGTCGACTTGAAAAGACTAAGAAGTCAAACAAACCTGAGAAGTCGCGGATGAGCACAGATCGTGTTGACAGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E398130" ref_strand="+" ref_description="SGN-E398130 [TUS-14-K6](-)">
      <seq>aacattaagcagaaaactatataaagacagattaagatgttttgacgcacaaagcaacattctaattaaagtttgaccagtgttgtcaaaagtgcacttagccctgaagcgaggctcaaaacgtgttgaggcgctttgcctcgcttaatcttcatcaaggttctaagacatactcttcctagtcaataagcctcttgtgaagaggcgacactaaacaatcaatactttactttacgtgaattgtctttaacttttttgttcatatatatccttcattcatgcttataattattagcttgaactaatcatatatatttaaaattttctcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="158690" stop="157762"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="158390" g_stop="158062" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E398130" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="158390" e_stop="158062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTAAGCAGAAAACTATATAAAGACAGATTAAGATGTTTTGACGCACAAAGCAACATTCTAATTAAAGTTTGACCAGTGTTGTCAAAAGTGCACTTAGCCCTGAAGCGAGGCTCAAAACGTGTTGAGGCGCTTTGCCTCGCTTAATCTTCATCAAGGTTCTAAGACATACTCTTCCTAGTCAATAAGCCTCTTGTGAAGAGGCGACACTAAACAATCAATACTTTACTTTACGTGAATTGTCTTTAACTTTTTTGTTCATATATATCCTTCATTCATGCTTATAATTATTAGCTTGAACTAATCATATATATTTGAAATTTTCTCA</genome_strand>
        <mrna_strand>AACATTAAGCAGAAAACTATATAAAGACAGATTAAGATGTTTTGACGCACAAAGCAACATTCTAATTAAAGTTTGACCAGTGTTGTCAAAAGTGCACTTAGCCCTGAAGCGAGGCTCAAAACGTGTTGAGGCGCTTTGCCTCGCTTAATCTTCATCAAGGTTCTAAGACATACTCTTCCTAGTCAATAAGCCTCTTGTGAAGAGGCGACACTAAACAATCAATACTTTACTTTACGTGAATTGTCTTTAACTTTTTTGTTCATATATATCCTTCATTCATGCTTATAATTATTAGCTTGAACTAATCATATATATTTAAAATTTTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E378842" ref_strand="+" ref_description="SGN-E378842 [TUS-1-E18](-)">
      <seq>tacagataaccactgagagtgttttaccttgtatatgtcaaaccaatatgtccgcttgacagggtacaaaactcttacaccagacaatattggactatgtaaaacaacacctcgtaaattgggtactcgtgatgcaagatcaacagttgggccactgccaacagattgaccatagattattaactgttcatctttgacctcatattgctcctttaagcatttatatactgcatcaatgtccgcgtatgtattacattcagatggctgtttcagagaaaggatgatttcattataatttaaacaacaaacagcaacaacggaatagacccatatgaataccaaatgagttcctagagcaagcaatgaatgaaaaatccaagattaagaactgaaactttcttatatacctgtgtcaggtctcacacatatttgttaataacattaagcagaaaactatataaagacagattaagatgttttgacgcacaaagcaacattctaattaaagtttgaccagtgttgtcaaaagtgcacttagccctgaagcgaggctcaaaacgtgttgaggcgctttgcctcgcttaatcttcatcaaggttctaagacatactcttcctagtcaataagcctcttgtgaagaggcgacactaaacaatcaatactttactttacgtgaattgtctttaacttgatgttcatatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="-" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="159127" stop="157822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="158827" g_stop="158126" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="701" r_length="701" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="-" ref_id="SGN-E378842" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="158827" e_stop="158126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGATAACCACTGAGAGTGTTTTACCTTGTATATGTCAAACCAATATGTCCGCTTGACAGGGTACAAAACTCTTACACCAGACAATATTGGACTATGTAAAACAACACCTCGTAAATTGGGTACTCGTGATGCAAGATCAACAGTTGGGCCACTGCCAACAGATTGACCATAGATTATTAACTGTTCATCTTTGACCTCATATTGCTCCTTTAAGCATTTATATACTGCATCAATGTCCGCGTATGTATTACATTCAGATGGCTGTTTCAGAGAAAGGATGATTTCATTATAATTTAAACAACAAACAGCAACAACGGAATAGACCCATATGAATACCAAATGAGTTCCTAGAGCAAGCAATGAATGAAAAATCCAAGATTAAGAACTGAAACTTTCTTATATACCTGTGTCAGGTCTCACACATATTTGTTAATAACATTAAGCAGAAAACTATATAAAGACAGATTAAGATGTTTTGACGCACAAAGCAACATTCTAATTAAAGTTTGACCAGTGTTGTCAAAAGTGCACTTAGCCCTGAAGCGAGGCTCAAAACGTGTTGAGGCGCTTTGCCTCGCTTAATCTTCATCAAGGTTCTAAGACATACTCTTCCTAGTCAATAAGCCTCTTGTGAAGAGGCGACACTAAACAATCAATACTTTACTTTACGTGAATTGTCTTTAACTTTTTTGTTCATAT</genome_strand>
        <mrna_strand>TACAGATAACCACTGAGAGTGTTTTACCTTGTATATGTCAAACCAATATGTCCGCTTGACAGGGTACAAAACTCTTACACCAGACAATATTGGACTATGTAAAACAACACCTCGTAAATTGGGTACTCGTGATGCAAGATCAACAGTTGGGCCACTGCCAACAGATTGACCATAGATTATTAACTGTTCATCTTTGACCTCATATTGCTCCTTTAAGCATTTATATACTGCATCAATGTCCGCGTATGTATTACATTCAGATGGCTGTTTCAGAGAAAGGATGATTTCATTATAATTTAAACAACAAACAGCAACAACGGAATAGACCCATATGAATACCAAATGAGTTCCTAGAGCAAGCAATGAATGAAAAATCCAAGATTAAGAACTGAAACTTTCTTATATACCTGTGTCAGGTCTCACACATATTTGTTAATAACATTAAGCAGAAAACTATATAAAGACAGATTAAGATGTTTTGACGCACAAAGCAACATTCTAATTAAAGTTTGACCAGTGTTGTCAAAAGTGCACTTAGCCCTGAAGCGAGGCTCAAAACGTGTTGAGGCGCTTTGCCTCGCTTAATCTTCATCAAGGTTCTAAGACATACTCTTCCTAGTCAATAAGCCTCTTGTGAAGAGGCGACACTAAACAATCAATACTTTACTTTACGTGAATTGTCTTTAAC-TTGATGTTCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E370108" ref_strand="+" ref_description="SGN-E370108 [TUS-26-H20](-)">
      <seq>attgacaagattagtgcagtgaattgtccggttctcgtcattcatgaaacagcggatgaagttgttgactactcccatgggaaacagctgtggaagctatgtaacgaaaaatatgaacctttgtgaataaatgaaggtggacactgcaatcttgaactttacccagagtatatcaaacatctaaagaaatttgttcttggtcttggcaaaccgaagcctgctgctaatggcccccagaaagcatcaacagagtctgaaaatcagagtaaacctgccgaaagtggtagtaccaccgacacgtttgacctgaaacctgatcttcctgaaatttcaaggaacagtttggatagtcgacttgaaaagactaagaagtcaaacaaacctgagaagtcgcggatgagcacagatcgtgttgacaggtttaggagaagaaagggcttagtgtggtgattcctaaattacagagggaaaacaccattaattaatcacctgaggaagttaacatgtgtctgtttatgcaaacaagggatgagcattaactgcagttcctgtgagcgtaattgtaggtgtaaatggttgagttatctgtgccatcaagatataaagtggtgcgggagaaataaagtaattagtgcatcccttttccccctgtataatcaaatgtaacattttgacatgaaaagcttgtagttttataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="158590" stop="159860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="158890" g_stop="158934" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="158935" i_stop="159226" i_length="292">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="159227" g_stop="159860" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="679" r_length="634" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="695" polyA_stop="710"/>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E370108" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="158890" e_stop="158934"/>
          <exon e_start="159227" e_stop="159860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGACAAGATTAGTGCAGTGAATTGTCCGGTTCTCGTCATTCATGTAAGTTTTCCTTCTTATCCAATCTTTTATACTTCTACTCCATAATTAGCAATCTCTTTCAAATTCAATCTATTTACAAATACCTCACAGTATAGATGGGTCCAGGATAGATGGCGGGGCAACTGTCCTGTTACTGGTTAATTTAATAACTGTAGATCCTCTATGTGTTTGTACCTCCCAACGATTCTAATTCTTTACCTGTTAATAAACTACTTTAGACACTTTCTGCCTTGTGCCTCCCAAAGGTTCTGTTTTTGAACATTTTACTCAAAGAATTTTAACACGTGTATAGGGAACAGCGGATGAAGTTGTTGACTACTCCCATGGGAAACAGCTGTGGGAGCTATGTAACGAAAAATATGAACCTTTGTGGATAAATGGAGGTGGACACTGCAATCTTGAACTTTACCCAGAGTATATCAAACATCTAAAGAAATTTGTTCTTGGTCTTGGCAAACCGAAGCCTGCTGCTAATGGCCCCCAGAAAGCATCAACAGAGTCTGAAAATCAGAGTAAACCTGCCGAAAGTGGTAGTACCACCGACACGTTTGACCTGAAACCTGATCTTCCTGAAATTTCAAGGAACAGTTTGGATAGTCGACTTGAAAAGACTAAGAAGTCAAACAAACCTGAGAAGTCGCGGATGAGCACAGATCGTGTTGACAGGTTTAGGAGAAGAAAGGGCTTAGTGTGGTGATTCCTAAATTACAGAGGGAAAACACCATTAATTAATCACCTGAGGAAGTTAACATGTGTCTGTTTATGCAAACAAGGGATGAGCATTAACTGCAGTTCCTGTGAGCGTAATTGTAGGTGTAAATGGTTGAGTTATCTGTGCCATCAAGATATAAAGTGGTGCGGGAGAAATAAAGTAATTAGTGCATCCCTTTTCCCCCTGTATAATCAAATGTAACATTTTGACATAA</genome_strand>
        <mrna_strand>ATTGACAAGATTAGTGCAGTGAATTGTCCGGTTCTCGTCATTCAT....................................................................................................................................................................................................................................................................................................GAAACAGCGGATGAAGTTGTTGACTACTCCCATGGGAAACAGCTGTGGAAGCTATGTAACGAAAAATATGAACCTTTGTGAATAAATGAAGGTGGACACTGCAATCTTGAACTTTACCCAGAGTATATCAAACATCTAAAGAAATTTGTTCTTGGTCTTGGCAAACCGAAGCCTGCTGCTAATGGCCCCCAGAAAGCATCAACAGAGTCTGAAAATCAGAGTAAACCTGCCGAAAGTGGTAGTACCACCGACACGTTTGACCTGAAACCTGATCTTCCTGAAATTTCAAGGAACAGTTTGGATAGTCGACTTGAAAAGACTAAGAAGTCAAACAAACCTGAGAAGTCGCGGATGAGCACAGATCGTGTTGACAGGTTTAGGAGAAGAAAGGGCTTAGTGTGGTGATTCCTAAATTACAGAGGGAAAACACCATTAATTAATCACCTGAGGAAGTTAACATGTGTCTGTTTATGCAAACAAGGGATGAGCATTAACTGCAGTTCCTGTGAGCGTAATTGTAGGTGTAAATGGTTGAGTTATCTGTGCCATCAAGATATAAAGTGGTGCGGGAGAAATAAAGTAATTAGTGCATCCCTTTTCCCCCTGTATAATCAAATGTAACATTTTGACATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E589705" ref_strand="+" ref_description="SGN-E589705 [43285]">
      <seq>tgtgaagttgttgactactcccacgggaaacagctgtgggagctatgtaaagaaaaatatgaacctttatggataaatggaggtggacattgcaatcttgaactttacccagaatatatcaaacatctaaagaaatttgttcttggtcttggcaaaccgaagcctgctgctaatggcccccagaaagcatcaacagagtctgaaaatcagagtaaacctgccgaaagttgggtgccaccgacacatttgacctgaaacctgatcttcctgaaatttcaaggaacagtttggatagtcgacttgaaaaggctaagaagtcaaacaaacctgagaagtcgcggatgagcacagatcgtgttgacaggtttaggagaagaaagggcttagtgtggtgattcctaaaatacagtggaaaacacctttaattaatcacctgagaagttaacatgtgcctgtttatgcaaacaagggatgagctctaactgcagttcctgtgagtgtaattgtaggtgtaaatggttgagttatctgtgccatcaagatataaagtggtgacggagaactaacttaagtagtgcatccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0011O23-NiWuT/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0011O23.1" temp_strand="+" temp_description="C02HBa0011O23.1  AC215354.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0011O23 sequenced_by:kribb upload_account_name:korea">
        <position start="158938" stop="159860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="159236" g_stop="159822" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0011O23.1" gen_strand="+" ref_id="SGN-E589705" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0011O23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E589705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="159236" e_stop="159822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAAGTTGTTGACTACTCCCATGGGAAACAGCTGTGGGAGCTATGTAACGAAAAATATGAACCTTTGTGGATAAATGGAGGTGGACACTGCAATCTTGAACTTTACCCAGAGTATATCAAACATCTAAAGAAATTTGTTCTTGGTCTTGGCAAACCGAAGCCTGCTGCTAATGGCCCCCAGAAAGCATCAACAGAGTCTGAAAATCAGAGTAAACCTGCCGAAAGTGGTAGTACCACCGACACGTTTGACCTGAAACCTGATCTTCCTGAAATTTCAAGGAACAGTTTGGATAGTCGACTTGAAAAGACTAAGAAGTCAAACAAACCTGAGAAGTCGCGGATGAGCACAGATCGTGTTGACAGGTTTAGGAGAAGAAAGGGCTTAGTGTGGTGATTCCTAAATTACAGAGGGAAAACACCATTAATTAATCACCTGAGGAAGTTAACATGTGTCTGTTTATGCAAACAAGGGATGAGCATTAACTGCAGTTCCTGTGAGCGTAATTGTAGGTGTAAATGGTTGAGTTATCTGTGCCATCAAGATATAAAGTGGTGCGGGAGAAATAAAGTAATTAGTGCATCCCT</genome_strand>
        <mrna_strand>TGTGAAGTTGTTGACTACTCCCACGGGAAACAGCTGTGGGAGCTATGTAAAGAAAAATATGAACCTTTATGGATAAATGGAGGTGGACATTGCAATCTTGAACTTTACCCAGAATATATCAAACATCTAAAGAAATTTGTTCTTGGTCTTGGCAAACCGAAGCCTGCTGCTAATGGCCCCCAGAAAGCATCAACAGAGTCTGAAAATCAGAGTAAACCTGCCGAAAGTTG-GGTGCCACCGACACATTTGACCTGAAACCTGATCTTCCTGAAATTTCAAGGAACAGTTTGGATAGTCGACTTGAAAAGGCTAAGAAGTCAAACAAACCTGAGAAGTCGCGGATGAGCACAGATCGTGTTGACAGGTTTAGGAGAAGAAAGGGCTTAGTGTGGTGATTCCTAAAATACAG-TGGAAAACACCTTTAATTAATCACCTGA-GAAGTTAACATGTGCCTGTTTATGCAAACAAGGGATGAGCTCTAACTGCAGTTCCTGTGAGTGTAATTGTAGGTGTAAATGGTTGAGTTATCTGTGCCATCAAGATATAAAGTGGTGACGGAGAACTAACTTAAGTAGTGCATCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>156</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="1525" PGL_stop="1253"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1525" e_stop="1253"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="1525" e_stop="1253" e_length="273"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1525" stop="1253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249644" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTGGGTAACCCCTTTTGGCTGTCTTAAAGAACTCTCTATTTACTCAGCTGGAAATTCAGGGGAATTTGATTATGGGGAGTTTTATGGTTCTTGTGAGTTGAATTTGGAGAGTCTTTTGTTGACTGGAATTAAATCAGGGGATAAGGGGGTTGGTTTTTTATGGAGGAATTGCAAAAAGGTAACAACTTTGAAGCTGATAAGCTGTGAAGGGGTTGGTGATCAAGGTTCTTTTTTAACATTTCTTCAGTGTTTAGAGGGTCTTCAAGAATTGG</gDNA_template>
            <first_frame> S  G  *  P  L  L  A  V  L  K  N  S  L  F  T  Q  L  E  I  Q  G  N  L  I  M  G  S  F  M  V  L  V  S  *  I  W  R  V  F  C  *  L  E  L  N  Q  G  I  R  G  L  V  F  Y  G  G  I  A  K  R  *  Q  L  *  S  *  *  A  V  K  G  L  V  I  K  V  L  F  *  H  F  F  S  V  *  R  V  F  K  N  W </first_frame>
            <second_frame>  L  G  N  P  F  W  L  S  *  R  T  L  Y  L  L  S  W  K  F  R  G  I  *  L  W  G  V  L  W  F  L  *  V  E  F  G  E  S  F  V  D  W  N  *  I  R  G  *  G  G  W  F  F  M  E  E  L  Q  K  G  N  N  F  E  A  D  K  L  *  R  G  W  *  S  R  F  F  F  N  I  S  S  V  F  R  G  S  S  R  I   </second_frame>
            <third_frame>   W  V  T  P  F  G  C  L  K  E  L  S  I  Y  S  A  G  N  S  G  E  F  D  Y  G  E  F  Y  G  S  C  E  L  N  L  E  S  L  L  L  T  G  I  K  S  G  D  K  G  V  G  F  L  W  R  N  C  K  K  V  T  T  L  K  L  I  S  C  E  G  V  G  D  Q  G  S  F  L  T  F  L  Q  C  L  E  G  L  Q  E  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011O23.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1523" stop="1254"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WVTPFGCLKELSIYSAGNSGEFDYGEFYGSCELNLESLLLTGIKSGDKGVGFLWRNCKKVTTLKLISCEGVGDQGSFLTFLQCLEGLQEL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="63747" PGL_stop="64319"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63747" e_stop="64057"/>
            <exon e_start="64240" e_stop="64319"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.974"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="63747" e_stop="64057" e_length="311"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="64058" i_stop="64239" i_length="182"/>
          </intron>
          <exon e_serial="2" e_score="0.938">
            <gDNA_exon_boundary e_start="64240" e_stop="64319" e_length="80"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63747" stop="64057"/>
              <exon start="64240" stop="64319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367186" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATGTATCTGCGTCTTTCCTCCATTAACTGTTTTGTGACAATGTCAGATTTTCTTTGAATTCTTGCCTGCATTCCTTTTAAGAAAAATCAAGAACTTATCCATCTTTTTGAAGTTACACCTGTATTCTTAAGGCATATTTACAGGAAATAATGAAATTGTTATTTTCAAGAATATATTGACATTGCAAATATAAAGAAATTCAAGAAAACTTTCTTTCTCCAAAAAATTCTGTTGTTTTTCGTACTGTGTGTTGAAGATGTTCTAGAATTTGTTTTTGAGCCTTTTTATCTTGTATGATTTCAGAAGGGTT : GGTCGTTGTAGCCATAGGATTGCATGCATTACTCAACTAATAGGCCGCTCTGGCGGTTTGTATTCATTGGTTTGCATATA</gDNA_template>
            <first_frame> H  V  S  A  S  F  L  H  *  L  F  C  D  N  V  R  F  S  L  N  S  C  L  H  S  F  *  E  K  S  R  T  Y  P  S  F  *  S  Y  T  C  I  L  K  A  Y  L  Q  E  I  M  K  L  L  F  S  R  I  Y  *  H  C  K  Y  K  E  I  Q  E  N  F  L  S  P  K  N  S  V  V  F  R  T  V  C  *  R  C  S  R  I  C  F  *  A  F  L  S  C  M  I  S  E  G  L :   V  V  V  A  I  G  L  H  A  L  L  N  *  *  A  A  L  A  V  C  I  H  W  F  A  Y  </first_frame>
            <second_frame>  M  Y  L  R  L  S  S  I  N  C  F  V  T  M  S  D  F  L  *  I  L  A  C  I  P  F  K  K  N  Q  E  L  I  H  L  F  E  V  T  P  V  F  L  R  H  I  Y  R  K  *  *  N  C  Y  F  Q  E  Y  I  D  I  A  N  I  K  K  F  K  K  T  F  F  L  Q  K  I  L  L  F  F  V  L  C  V  E  D  V  L  E  F  V  F  E  P  F  Y  L  V  *  F  Q  K  G   : W  S  L  *  P  *  D  C  M  H  Y  S  T  N  R  P  L  W  R  F  V  F  I  G  L  H  I </second_frame>
            <third_frame>   C  I  C  V  F  P  P  L  T  V  L  *  Q  C  Q  I  F  F  E  F  L  P  A  F  L  L  R  K  I  K  N  L  S  I  F  L  K  L  H  L  Y  S  *  G  I  F  T  G  N  N  E  I  V  I  F  K  N  I  L  T  L  Q  I  *  R  N  S  R  K  L  S  F  S  K  K  F  C  C  F  S  Y  C  V  L  K  M  F  *  N  L  F  L  S  L  F  I  L  Y  D  F  R  R  V  :  G  R  C  S  H  R  I  A  C  I  T  Q  L  I  G  R  S  G  G  L  Y  S  L  V  C  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0011O23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="76317" PGL_stop="74045"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76317" e_stop="76261"/>
            <exon e_start="75992" e_stop="75912"/>
            <exon e_start="75225" e_stop="74962"/>
            <exon e_start="74871" e_stop="74784"/>
            <exon e_start="74680" e_stop="74571"/>
            <exon e_start="74461" e_stop="74371"/>
            <exon e_start="74233" e_stop="74045"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.912" acc_prob="0.745" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.167" e_score="1.000"/>
          <exon-intron don_prob="0.941" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.301" acc_prob="0.223" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76317" e_stop="76261" e_length="57"/>
          </exon>
          <intron i_serial="1" don_prob="0.912" acc_prob="0.745">
            <gDNA_intron_boundary i_start="76260" i_stop="75993" i_length="268"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75992" e_stop="75912" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="75911" i_stop="75226" i_length="686"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75225" e_stop="74962" e_length="264"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.167">
            <gDNA_intron_boundary i_start="74961" i_stop="74872" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="74871" e_stop="74784" e_length="88"/>
          </exon>
          <intron i_serial="4" don_prob="0.941" acc_prob="0.969">
            <gDNA_intron_boundary i_start="74783" i_stop="74681" i_length="103"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="74680" e_stop="74571" e_length="110"/>
          </exon>
          <intron i_serial="5" don_prob="0.971" acc_prob="0.971">
            <gDNA_intron_boundary i_start="74570" i_stop="74462" i_length="109"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="74461" e_stop="74371" e_length="91"/>
          </exon>
          <intron i_serial="6" don_prob="0.301" acc_prob="0.223">
            <gDNA_intron_boundary i_start="74370" i_stop="74234" i_length="137"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="74233" e_stop="74045" e_length="189"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76317" stop="76261"/>
              <exon start="75992" stop="75912"/>
              <exon start="75225" stop="74962"/>
              <exon start="74871" stop="74784"/>
              <exon start="74680" stop="74571"/>
              <exon start="74461" stop="74371"/>
              <exon start="74233" stop="74045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710024" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGGATTTGAGATCTGTTTTCGTTTTCAAGAATTTCAGATGCTTTTCGCAGTCTCAG : AACGGATTAAGTCAAAGGTTGGAAACTTCTGCTGGATTTTCTCAACTGTTCCGGCCGTTGATAGCCCACAAGAAACACCAG : GGTAGAATGAGGGATGCCCAGCCTGGATCACATACTGTGAGCGTGAGGTCTCATGGTGTGACGGTTGCATCATATACAGTGAGGTCCCATGGTATAACAGTGGCAAGGACTCATTTAAATGACTGGATGATCCTAATACTACTTTTGGGGATAGTTGTCCTTCTGAATGTTATCCATCCGTTTTACCGGTTTGTTGGGAAAGACATGATGGAAGACCTCAAGTATCCTTTAAAAAGTAATACTGTACCTTTTTGGGCTGTGCCA : GTGTATGCTGTTCTGCTGCCTATGGTTGTATTTCTGCTCATTTATTTTCGGCGAAGAGATGTCTATGATCTTCATCATGCCATACTGG : GCCTTTTGTTCTCTGTTGTGGTAACAGCTGTTATCACAGGTGCTATAAAAGATGCAGTTGGAAGGCCTAGGCCAGACTTCTTCTGGCGCTGTTTTCCAGATGGAAAGGAA : GTTTACGATAAATGGGGAGATGTTGTATGCCATGGTGACAAAAATGTTGTCAGGGAAGGGCATAAAAGTTTTCCAAGTGGTCATACCTCCT : TGTCCTTTGCTGGTCTTGGCTTTCTATCGCTTTATTTATCTGGCAAGATACAAGTCTTTGACTGTAGAGGACATGTTGCTAAACTGTGTCTCGTATTACTTCCACTTCTTCTTGCATCTCTGGTTGCCATTTCTCGGGTGGATGACTATTGGCATCATTGGCAGGATGTGTTTGCTGGAGGTCTGATTG</gDNA_template>
            <first_frame> W  D  L  R  S  V  F  V  F  K  N  F  R  C  F  S  Q  S  Q  :  N  G  L  S  Q  R  L  E  T  S  A  G  F  S  Q  L  F  R  P  L  I  A  H  K  K  H  Q  :  G  R  M  R  D  A  Q  P  G  S  H  T  V  S  V  R  S  H  G  V  T  V  A  S  Y  T  V  R  S  H  G  I  T  V  A  R  T  H  L  N  D  W  M  I  L  I  L  L  L  G  I  V  V  L  L  N  V  I  H  P  F  Y  R  F  V  G  K  D  M  M  E  D  L  K  Y  P  L  K  S  N  T  V  P  F  W  A  V  P  :  V  Y  A  V  L  L  P  M  V  V  F  L  L  I  Y  F  R  R  R  D  V  Y  D  L  H  H  A  I  L   : G  L  L  F  S  V  V  V  T  A  V  I  T  G  A  I  K  D  A  V  G  R  P  R  P  D  F  F  W  R  C  F  P  D  G  K  E  :  V  Y  D  K  W  G  D  V  V  C  H  G  D  K  N  V  V  R  E  G  H  K  S  F  P  S  G  H  T  S   : L  S  F  A  G  L  G  F  L  S  L  Y  L  S  G  K  I  Q  V  F  D  C  R  G  H  V  A  K  L  C  L  V  L  L  P  L  L  L  A  S  L  V  A  I  S  R  V  D  D  Y  W  H  H  W  Q  D  V  F  A  G  G  L  I  </first_frame>
            <second_frame>  G  I  *  D  L  F  S  F  S  R  I  S  D  A  F  R  S  L  R :   T  D  *  V  K  G  W  K  L  L  L  D  F  L  N  C  S  G  R  *  *  P  T  R  N  T  R :   V  E  *  G  M  P  S  L  D  H  I  L  *  A  *  G  L  M  V  *  R  L  H  H  I  Q  *  G  P  M  V  *  Q  W  Q  G  L  I  *  M  T  G  *  S  *  Y  Y  F  W  G  *  L  S  F  *  M  L  S  I  R  F  T  G  L  L  G  K  T  *  W  K  T  S  S  I  L  *  K  V  I  L  Y  L  F  G  L  C  Q :   C  M  L  F  C  C  L  W  L  Y  F  C  S  F  I  F  G  E  E  M  S  M  I  F  I  M  P  Y  W  :  A  F  C  S  L  L  W  *  Q  L  L  S  Q  V  L  *  K  M  Q  L  E  G  L  G  Q  T  S  S  G  A  V  F  Q  M  E  R  K :   F  T  I  N  G  E  M  L  Y  A  M  V  T  K  M  L  S  G  K  G  I  K  V  F  Q  V  V  I  P  P  :  C  P  L  L  V  L  A  F  Y  R  F  I  Y  L  A  R  Y  K  S  L  T  V  E  D  M  L  L  N  C  V  S  Y  Y  F  H  F  F  L  H  L  W  L  P  F  L  G  W  M  T  I  G  I  I  G  R  M  C  L  L  E  V  *  L </second_frame>
            <third_frame>   G  F  E  I  C  F  R  F  Q  E  F  Q  M  L  F  A  V  S   : E  R  I  K  S  K  V  G  N  F  C  W  I  F  S  T  V  P  A  V  D  S  P  Q  E  T  P   : G  *  N  E  G  C  P  A  W  I  T  Y  C  E  R  E  V  S  W  C  D  G  C  I  I  Y  S  E  V  P  W  Y  N  S  G  K  D  S  F  K  *  L  D  D  P  N  T  T  F  G  D  S  C  P  S  E  C  Y  P  S  V  L  P  V  C  W  E  R  H  D  G  R  P  Q  V  S  F  K  K  *  Y  C  T  F  L  G  C  A   : S  V  C  C  S  A  A  Y  G  C  I  S  A  H  L  F  S  A  K  R  C  L  *  S  S  S  C  H  T  G :   P  F  V  L  C  C  G  N  S  C  Y  H  R  C  Y  K  R  C  S  W  K  A  *  A  R  L  L  L  A  L  F  S  R  W  K  G   : S  L  R  *  M  G  R  C  C  M  P  W  *  Q  K  C  C  Q  G  R  A  *  K  F  S  K  W  S  Y  L  L :   V  L  C  W  S  W  L  S  I  A  L  F  I  W  Q  D  T  S  L  *  L  *  R  T  C  C  *  T  V  S  R  I  T  S  T  S  S  C  I  S  G  C  H  F  S  G  G  *  L  L  A  S  L  A  G  C  V  C  W  R  S  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011O23.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76317" stop="76261"/>
                    <exon start="75992" stop="75912"/>
                    <exon start="75225" stop="74962"/>
                    <exon start="74871" stop="74784"/>
                    <exon start="74680" stop="74571"/>
                    <exon start="74461" stop="74371"/>
                    <exon start="74233" stop="74046"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>879</number_coding_nucleotides>
                  <number_encoded_amino_acids>293</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WDLRSVFVFKNFRCFSQSQNGLSQRLETSAGFSQLFRPLIAHKKHQGRMRDAQPGSHTVSVRSHGVTVASYTVRSHGITVARTHLNDWMILILLLGIVVLLNVIHPFYRFVGKDMMEDLKYPLKSNTVPFWAVPVYAVLLPMVVFLLIYFRRRDVYDLHHAILGLLFSVVVTAVITGAIKDAVGRPRPDFFWRCFPDGKEVYDKWGDVVCHGDKNVVREGHKSFPSGHTSLSFAGLGFLSLYLSGKIQVFDCRGHVAKLCLVLLPLLLASLVAISRVDDYWHHWQDVFAGGLI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="76316" e_stop="76261"/>
            <exon e_start="75992" e_stop="75912"/>
            <exon e_start="75228" e_stop="74962"/>
            <exon e_start="74871" e_stop="74784"/>
            <exon e_start="74680" e_stop="74676"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.912" acc_prob="0.745" e_score="0.946"/>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="0.975"/>
          <exon-intron don_prob="0.000" acc_prob="0.167" e_score="0.996"/>
          <exon-intron don_prob="0.941" acc_prob="0.969" e_score="0.989"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="76316" e_stop="76261" e_length="56"/>
          </exon>
          <intron i_serial="1" don_prob="0.912" acc_prob="0.745">
            <gDNA_intron_boundary i_start="76260" i_stop="75993" i_length="268"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="75992" e_stop="75912" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="75911" i_stop="75229" i_length="683"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="75228" e_stop="74962" e_length="267"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.167">
            <gDNA_intron_boundary i_start="74961" i_stop="74872" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="74871" e_stop="74784" e_length="88"/>
          </exon>
          <intron i_serial="4" don_prob="0.941" acc_prob="0.969">
            <gDNA_intron_boundary i_start="74783" i_stop="74681" i_length="103"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="74680" e_stop="74676" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76316" stop="76261"/>
              <exon start="75992" stop="75912"/>
              <exon start="75228" stop="74962"/>
              <exon start="74871" stop="74784"/>
              <exon start="74680" stop="74676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718708" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGATTTGAGATCTGTTTTCGTTTTCAAGAATTTCAGATGCTTTTCGCAGTCTCAG : AACGGATTAAGTCAAAGGTTGGAAACTTCTGCTGGATTTTCTCAACTGTTCCGGCCGTTGATAGCCCACAAGAAACACCAG : CAGGGTAGAATGAGGGATGCCCAGCCTGGATCACATACTGTGAGCGTGAGGTCTCATGGTGTGACGGTTGCATCATATACAGTGAGGTCCCATGGTATAACAGTGGCAAGGACTCATTTAAATGACTGGATGATCCTAATACTACTTTTGGGGATAGTTGTCCTTCTGAATGTTATCCATCCGTTTTACCGGTTTGTTGGGAAAGACATGATGGAAGACCTCAAGTATCCTTTAAAAAGTAATACTGTACCTTTTTGGGCTGTGCCA : GTGTATGCTGTTCTGCTGCCTATGGTTGTATTTCTGCTCATTTATTTTCGGCGAAGAGATGTCTATGATCTTCATCATGCCATACTGG : GCCTT</gDNA_template>
            <first_frame> G  I  *  D  L  F  S  F  S  R  I  S  D  A  F  R  S  L  R :   T  D  *  V  K  G  W  K  L  L  L  D  F  L  N  C  S  G  R  *  *  P  T  R  N  T  S :   R  V  E  *  G  M  P  S  L  D  H  I  L  *  A  *  G  L  M  V  *  R  L  H  H  I  Q  *  G  P  M  V  *  Q  W  Q  G  L  I  *  M  T  G  *  S  *  Y  Y  F  W  G  *  L  S  F  *  M  L  S  I  R  F  T  G  L  L  G  K  T  *  W  K  T  S  S  I  L  *  K  V  I  L  Y  L  F  G  L  C  Q :   C  M  L  F  C  C  L  W  L  Y  F  C  S  F  I  F  G  E  E  M  S  M  I  F  I  M  P  Y  W  :  A   </first_frame>
            <second_frame>  G  F  E  I  C  F  R  F  Q  E  F  Q  M  L  F  A  V  S   : E  R  I  K  S  K  V  G  N  F  C  W  I  F  S  T  V  P  A  V  D  S  P  Q  E  T  P   : A  G  *  N  E  G  C  P  A  W  I  T  Y  C  E  R  E  V  S  W  C  D  G  C  I  I  Y  S  E  V  P  W  Y  N  S  G  K  D  S  F  K  *  L  D  D  P  N  T  T  F  G  D  S  C  P  S  E  C  Y  P  S  V  L  P  V  C  W  E  R  H  D  G  R  P  Q  V  S  F  K  K  *  Y  C  T  F  L  G  C  A   : S  V  C  C  S  A  A  Y  G  C  I  S  A  H  L  F  S  A  K  R  C  L  *  S  S  S  C  H  T  G :   P  </second_frame>
            <third_frame>   D  L  R  S  V  F  V  F  K  N  F  R  C  F  S  Q  S  Q  :  N  G  L  S  Q  R  L  E  T  S  A  G  F  S  Q  L  F  R  P  L  I  A  H  K  K  H  Q  :  Q  G  R  M  R  D  A  Q  P  G  S  H  T  V  S  V  R  S  H  G  V  T  V  A  S  Y  T  V  R  S  H  G  I  T  V  A  R  T  H  L  N  D  W  M  I  L  I  L  L  L  G  I  V  V  L  L  N  V  I  H  P  F  Y  R  F  V  G  K  D  M  M  E  D  L  K  Y  P  L  K  S  N  T  V  P  F  W  A  V  P  :  V  Y  A  V  L  L  P  M  V  V  F  L  L  I  Y  F  R  R  R  D  V  Y  D  L  H  H  A  I  L   : G  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011O23.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76314" stop="76261"/>
                    <exon start="75992" stop="75912"/>
                    <exon start="75228" stop="74962"/>
                    <exon start="74871" stop="74784"/>
                    <exon start="74680" stop="74676"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLRSVFVFKNFRCFSQSQNGLSQRLETSAGFSQLFRPLIAHKKHQQGRMRDAQPGSHTVSVRSHGVTVASYTVRSHGITVARTHLNDWMILILLLGIVVLLNVIHPFYRFVGKDMMEDLKYPLKSNTVPFWAVPVYAVLLPMVVFLLIYFRRRDVYDLHHAILGL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="82546" PGL_stop="84855"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82546" e_stop="82784"/>
            <exon e_start="83721" e_stop="84855"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="0.962"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="82546" e_stop="82784" e_length="239"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="82785" i_stop="83720" i_length="936"/>
          </intron>
          <exon e_serial="2" e_score="0.971">
            <gDNA_exon_boundary e_start="83721" e_stop="84855" e_length="1135"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82546" stop="82784"/>
              <exon start="83721" stop="83976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82761" stop="82784"/>
              <exon start="83721" stop="84442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82761" stop="82784"/>
              <exon start="83721" stop="83939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84001" stop="84469"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84355" stop="84855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84355" stop="84855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421041" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAGGTGATAATTTGAGTGCAATCGGAGGGAGTGCTGGAGATGCCAAGCAAACATTGGATTTTGGTGGTGGTTCAGTGCCCGAGTCTATGGTTTTGGAGACGAGCTCTTCATTTGGGTCGACCAGTTCTTCCATTTCTATGTCTAATATGCCTGCTATTGGAGTTCAAGCCGAGGATGGTGGCGTCAATTTGCAGGACAAAAGAGTGAGAGTGCCCTCATCATCAGCTTCAATAGAGAG : CGATAGTATCATGGGAGGTGCGGGTTTTCAACCTAAAGTTGGAATTCACCAAGAACCACTTATTCAAGTTATGTCCAGTATGGCCTCCCACAGTCTCTTCGAAGCAGAAGGCTCCAATGCCAGTCCCTCTCTCATTCAGACGCCAAAAATGGTTCAGGTTTCTGGGTATCCACTACCTCAGACATTGGATGGGAAGCAGCCCCAACCTGGAATTCAGTATGTTCATGGCGGTGCCTGTTATGTACCTCATTATCCTAGCGGTCCTCTGCCAGTATCATCCTGTTATCCATTTTATCAGGTTCCCATGCAGCAGCCACAACAAACTCCTTATCCTCTGAATCAACAATACCCAATATACTTGGTTCCTGTGCAGCAAATGCAATCTCACAGTATGTCAGTACTGCCCAACATTAATCATGCAGCAGTGATGGCGTCCAATCGGCCACCCTTGCATTCACAAAGTGTCATAAACCCTCCATCAGTAGCTTATAAGGAGGTCATGGCGGCTCAATCAGTGCCTGAGTCAGGTCCAAAAGTGTACACGACTGTCCCAACAGCATCACTACCCATTAGTGCGCCTTCTCAGACTCAGCAACAATATACTGTCCTTCCTGAACCACAGCTTACTTCCCAACCTGTCTCAACTGCATCAGTTCCTGCTGCAAATGATGCAAATGAGTTTGACGATGATCTTGCATACAATCAGATATATAAATCTCAGCCTCCTCCACCTTCTTTCATTTCCCAGTGCCAAACCATTACAAAGGGGGCGGCAGTATTACTGTCAGAGTCTTCCATGCAGATGCACAGTAACAATGTCATGAACCAGGCACCATCACATCCTCAGTGAGGCTACGACAATAAGATCAAAAGTTTTGATAGTGGGATCATCTTTTGTTATAGTTCACAAATTTTAAGATTTATTCTTTCATGTCGTTTGAGGCACATAAACCATAAGATTTTCTTGTGTAGTTTGTTTGTCTCTTTATTTAATATTTGTTAGGACAATCCCCATACTCTGAATACATCGACACCCAAAAAATAGAAAAATTGAAGAAAGTTAAACAGTGGTGAAGACTGAAAGTAGTTGTTTTTGTTTGTTTGCTCAGAATACATGTGATGAATAACAGTGTGA</gDNA_template>
            <first_frame> Q  G  D  N  L  S  A  I  G  G  S  A  G  D  A  K  Q  T  L  D  F  G  G  G  S  V  P  E  S  M  V  L  E  T  S  S  S  F  G  S  T  S  S  S  I  S  M  S  N  M  P  A  I  G  V  Q  A  E  D  G  G  V  N  L  Q  D  K  R  V  R  V  P  S  S  S  A  S  I  E  S :   D  S  I  M  G  G  A  G  F  Q  P  K  V  G  I  H  Q  E  P  L  I  Q  V  M  S  S  M  A  S  H  S  L  F  E  A  E  G  S  N  A  S  P  S  L  I  Q  T  P  K  M  V  Q  V  S  G  Y  P  L  P  Q  T  L  D  G  K  Q  P  Q  P  G  I  Q  Y  V  H  G  G  A  C  Y  V  P  H  Y  P  S  G  P  L  P  V  S  S  C  Y  P  F  Y  Q  V  P  M  Q  Q  P  Q  Q  T  P  Y  P  L  N  Q  Q  Y  P  I  Y  L  V  P  V  Q  Q  M  Q  S  H  S  M  S  V  L  P  N  I  N  H  A  A  V  M  A  S  N  R  P  P  L  H  S  Q  S  V  I  N  P  P  S  V  A  Y  K  E  V  M  A  A  Q  S  V  P  E  S  G  P  K  V  Y  T  T  V  P  T  A  S  L  P  I  S  A  P  S  Q  T  Q  Q  Q  Y  T  V  L  P  E  P  Q  L  T  S  Q  P  V  S  T  A  S  V  P  A  A  N  D  A  N  E  F  D  D  D  L  A  Y  N  Q  I  Y  K  S  Q  P  P  P  P  S  F  I  S  Q  C  Q  T  I  T  K  G  A  A  V  L  L  S  E  S  S  M  Q  M  H  S  N  N  V  M  N  Q  A  P  S  H  P  Q  *  G  Y  D  N  K  I  K  S  F  D  S  G  I  I  F  C  Y  S  S  Q  I  L  R  F  I  L  S  C  R  L  R  H  I  N  H  K  I  F  L  C  S  L  F  V  S  L  F  N  I  C  *  D  N  P  H  T  L  N  T  S  T  P  K  K  *  K  N  *  R  K  L  N  S  G  E  D  *  K  *  L  F  L  F  V  C  S  E  Y  M  *  *  I  T  V  * </first_frame>
            <second_frame>  K  V  I  I  *  V  Q  S  E  G  V  L  E  M  P  S  K  H  W  I  L  V  V  V  Q  C  P  S  L  W  F  W  R  R  A  L  H  L  G  R  P  V  L  P  F  L  C  L  I  C  L  L  L  E  F  K  P  R  M  V  A  S  I  C  R  T  K  E  *  E  C  P  H  H  Q  L  Q  *  R   : A  I  V  S  W  E  V  R  V  F  N  L  K  L  E  F  T  K  N  H  L  F  K  L  C  P  V  W  P  P  T  V  S  S  K  Q  K  A  P  M  P  V  P  L  S  F  R  R  Q  K  W  F  R  F  L  G  I  H  Y  L  R  H  W  M  G  S  S  P  N  L  E  F  S  M  F  M  A  V  P  V  M  Y  L  I  I  L  A  V  L  C  Q  Y  H  P  V  I  H  F  I  R  F  P  C  S  S  H  N  K  L  L  I  L  *  I  N  N  T  Q  Y  T  W  F  L  C  S  K  C  N  L  T  V  C  Q  Y  C  P  T  L  I  M  Q  Q  *  W  R  P  I  G  H  P  C  I  H  K  V  S  *  T  L  H  Q  *  L  I  R  R  S  W  R  L  N  Q  C  L  S  Q  V  Q  K  C  T  R  L  S  Q  Q  H  H  Y  P  L  V  R  L  L  R  L  S  N  N  I  L  S  F  L  N  H  S  L  L  P  N  L  S  Q  L  H  Q  F  L  L  Q  M  M  Q  M  S  L  T  M  I  L  H  T  I  R  Y  I  N  L  S  L  L  H  L  L  S  F  P  S  A  K  P  L  Q  R  G  R  Q  Y  Y  C  Q  S  L  P  C  R  C  T  V  T  M  S  *  T  R  H  H  H  I  L  S  E  A  T  T  I  R  S  K  V  L  I  V  G  S  S  F  V  I  V  H  K  F  *  D  L  F  F  H  V  V  *  G  T  *  T  I  R  F  S  C  V  V  C  L  S  L  Y  L  I  F  V  R  T  I  P  I  L  *  I  H  R  H  P  K  N  R  K  I  E  E  S  *  T  V  V  K  T  E  S  S  C  F  C  L  F  A  Q  N  T  C  D  E  *  Q  C   </second_frame>
            <third_frame>   R  *  *  F  E  C  N  R  R  E  C  W  R  C  Q  A  N  I  G  F  W  W  W  F  S  A  R  V  Y  G  F  G  D  E  L  F  I  W  V  D  Q  F  F  H  F  Y  V  *  Y  A  C  Y  W  S  S  S  R  G  W  W  R  Q  F  A  G  Q  K  S  E  S  A  L  I  I  S  F  N  R  E  :  R  *  Y  H  G  R  C  G  F  S  T  *  S  W  N  S  P  R  T  T  Y  S  S  Y  V  Q  Y  G  L  P  Q  S  L  R  S  R  R  L  Q  C  Q  S  L  S  H  S  D  A  K  N  G  S  G  F  W  V  S  T  T  S  D  I  G  W  E  A  A  P  T  W  N  S  V  C  S  W  R  C  L  L  C  T  S  L  S  *  R  S  S  A  S  I  I  L  L  S  I  L  S  G  S  H  A  A  A  T  T  N  S  L  S  S  E  S  T  I  P  N  I  L  G  S  C  A  A  N  A  I  S  Q  Y  V  S  T  A  Q  H  *  S  C  S  S  D  G  V  Q  S  A  T  L  A  F  T  K  C  H  K  P  S  I  S  S  L  *  G  G  H  G  G  S  I  S  A  *  V  R  S  K  S  V  H  D  C  P  N  S  I  T  T  H  *  C  A  F  S  D  S  A  T  I  Y  C  P  S  *  T  T  A  Y  F  P  T  C  L  N  C  I  S  S  C  C  K  *  C  K  *  V  *  R  *  S  C  I  Q  S  D  I  *  I  S  A  S  S  T  F  F  H  F  P  V  P  N  H  Y  K  G  G  G  S  I  T  V  R  V  F  H  A  D  A  Q  *  Q  C  H  E  P  G  T  I  T  S  S  V  R  L  R  Q  *  D  Q  K  F  *  *  W  D  H  L  L  L  *  F  T  N  F  K  I  Y  S  F  M  S  F  E  A  H  K  P  *  D  F  L  V  *  F  V  C  L  F  I  *  Y  L  L  G  Q  S  P  Y  S  E  Y  I  D  T  Q  K  I  E  K  L  K  K  V  K  Q  W  *  R  L  K  V  V  V  F  V  C  L  L  R  I  H  V  M  N  N  S  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011O23.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82546" stop="82784"/>
                    <exon start="83721" stop="84570"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1086</number_coding_nucleotides>
                  <number_encoded_amino_acids>362</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGDNLSAIGGSAGDAKQTLDFGGGSVPESMVLETSSSFGSTSSSISMSNMPAIGVQAEDGGVNLQDKRVRVPSSSASIESDSIMGGAGFQPKVGIHQEPLIQVMSSMASHSLFEAEGSNASPSLIQTPKMVQVSGYPLPQTLDGKQPQPGIQYVHGGACYVPHYPSGPLPVSSCYPFYQVPMQQPQQTPYPLNQQYPIYLVPVQQMQSHSMSVLPNINHAAVMASNRPPLHSQSVINPPSVAYKEVMAAQSVPESGPKVYTTVPTASLPISAPSQTQQQYTVLPEPQLTSQPVSTASVPAANDANEFDDDLAYNQIYKSQPPPPSFISQCQTITKGAAVLLSESSMQMHSNNVMNQAPSHPQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="84878" PGL_stop="84082"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84878" e_stop="84082"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="84878" e_stop="84082" e_length="797"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84878" stop="84355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84734" stop="84082"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427945" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGACAGATATTTATGGTAAAACTCACACTGTTATTCATCACATGTATTCTGAGCAAACAAACAAAAACAACTACTTTCAGTCTTCACCACTGTTTAACTTTCTTCAATTTTTCTATTTTTTGGGTGTCGATGTATTCAGAGTATGGGGATTGTCCTAACAAATATTAAATAAAGAGACAAACAAACTACACAAGAAAATCTTATGGTTTATGTGCCTCAAACGACATGAAAGAATAAATCTTAAAATTTGTGAACTATAACAAAAGATGATCCCACTATCAAAACTTTTGATCTTATTGTCGTAGCCTCACTGAGGATGTGATGGTGCCTGGTTCATGACATTGTTACTGTGCATCTGCATGGAAGACTCTGACAGTAATACTGCCGCCCCCTTTGTAATGGTTTGGCACTGGGAAATGAAAGAAGGTGGAGGAGGCTGAGATTTATATATCTGATTGTATGCAAGATCATCGTCAAACTCATTTGCATCATTTGCAGCAGGAACTGATGCAGTTGAGACAGGTTGGGAAGTAAGCTGTGGTTCAGGAAGGACAGTATATTGTTGCTGAGTCTGAGAAGGCGCACTAATGGGTAGTGATGCTGTTGGGACAGTCGTGTACACTTTTGGACCTGACTCAGGCACTGATTGAGCCGCCATGACCTCCTTATAAGCTACTGATGGAGGGTTTATGACACTTTGTGAATGCAAGGGTGGCCGATTGGACGCCATCACTGCTGCATGATTAATGTTGGGCAGTACTGACATACTGTGAGATTGCATTTGCTGCACAGGAAC</gDNA_template>
            <first_frame> *  T  D  I  Y  G  K  T  H  T  V  I  H  H  M  Y  S  E  Q  T  N  K  N  N  Y  F  Q  S  S  P  L  F  N  F  L  Q  F  F  Y  F  L  G  V  D  V  F  R  V  W  G  L  S  *  Q  I  L  N  K  E  T  N  K  L  H  K  K  I  L  W  F  M  C  L  K  R  H  E  R  I  N  L  K  I  C  E  L  *  Q  K  M  I  P  L  S  K  L  L  I  L  L  S  *  P  H  *  G  C  D  G  A  W  F  M  T  L  L  L  C  I  C  M  E  D  S  D  S  N  T  A  A  P  F  V  M  V  W  H  W  E  M  K  E  G  G  G  G  *  D  L  Y  I  *  L  Y  A  R  S  S  S  N  S  F  A  S  F  A  A  G  T  D  A  V  E  T  G  W  E  V  S  C  G  S  G  R  T  V  Y  C  C  *  V  *  E  G  A  L  M  G  S  D  A  V  G  T  V  V  Y  T  F  G  P  D  S  G  T  D  *  A  A  M  T  S  L  *  A  T  D  G  G  F  M  T  L  C  E  C  K  G  G  R  L  D  A  I  T  A  A  *  L  M  L  G  S  T  D  I  L  *  D  C  I  C  C  T  G   </first_frame>
            <second_frame>  R  Q  I  F  M  V  K  L  T  L  L  F  I  T  C  I  L  S  K  Q  T  K  T  T  T  F  S  L  H  H  C  L  T  F  F  N  F  S  I  F  W  V  S  M  Y  S  E  Y  G  D  C  P  N  K  Y  *  I  K  R  Q  T  N  Y  T  R  K  S  Y  G  L  C  A  S  N  D  M  K  E  *  I  L  K  F  V  N  Y  N  K  R  *  S  H  Y  Q  N  F  *  S  Y  C  R  S  L  T  E  D  V  M  V  P  G  S  *  H  C  Y  C  A  S  A  W  K  T  L  T  V  I  L  P  P  P  L  *  W  F  G  T  G  K  *  K  K  V  E  E  A  E  I  Y  I  S  D  C  M  Q  D  H  R  Q  T  H  L  H  H  L  Q  Q  E  L  M  Q  L  R  Q  V  G  K  *  A  V  V  Q  E  G  Q  Y  I  V  A  E  S  E  K  A  H  *  W  V  V  M  L  L  G  Q  S  C  T  L  L  D  L  T  Q  A  L  I  E  P  P  *  P  P  Y  K  L  L  M  E  G  L  *  H  F  V  N  A  R  V  A  D  W  T  P  S  L  L  H  D  *  C  W  A  V  L  T  Y  C  E  I  A  F  A  A  Q  E  </second_frame>
            <third_frame>   D  R  Y  L  W  *  N  S  H  C  Y  S  S  H  V  F  *  A  N  K  Q  K  Q  L  L  S  V  F  T  T  V  *  L  S  S  I  F  L  F  F  G  C  R  C  I  Q  S  M  G  I  V  L  T  N  I  K  *  R  D  K  Q  T  T  Q  E  N  L  M  V  Y  V  P  Q  T  T  *  K  N  K  S  *  N  L  *  T  I  T  K  D  D  P  T  I  K  T  F  D  L  I  V  V  A  S  L  R  M  *  W  C  L  V  H  D  I  V  T  V  H  L  H  G  R  L  *  Q  *  Y  C  R  P  L  C  N  G  L  A  L  G  N  E  R  R  W  R  R  L  R  F  I  Y  L  I  V  C  K  I  I  V  K  L  I  C  I  I  C  S  R  N  *  C  S  *  D  R  L  G  S  K  L  W  F  R  K  D  S  I  L  L  L  S  L  R  R  R  T  N  G  *  *  C  C  W  D  S  R  V  H  F  W  T  *  L  R  H  *  L  S  R  H  D  L  L  I  S  Y  *  W  R  V  Y  D  T  L  *  M  Q  G  W  P  I  G  R  H  H  C  C  M  I  N  V  G  Q  Y  *  H  T  V  R  L  H  L  L  H  R  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0011O23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="86436" PGL_stop="85421"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86436" e_stop="85421"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="86436" e_stop="85421" e_length="1016"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86436" stop="85563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740433" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86435" stop="85662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86246" stop="85421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86186" stop="85429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545769" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACAGCTTTCAGTTCATGGGTTCAATGGACGTTGTGAGGAATGAGCTCAAATGCATCTCAGAGGAATCAGCTCGATTAAAGAAAAAGGGTAACAAGGCAGACTCGACAATTCAGAACCTCAACACGAAGCTTCTGAGGGCAAAAGCCAAACTGGAAGCTGCATCCCACAATGAAGGAAAAGCAACCTCTATTGCTTCAAGTTTATTACTCAGTCTTGAACAATTGACAAATGAAGCTGAAGAATCTGAGAAAGAAAGAGACAATGCCATTGAGGAAGCTGCAAAAGTCGAAGAAGAAATACAGAAAACACAATCTGAAACAGTGTTGGCCGAGGAAAGATGGGAAGCTGCAATACAAGAGCTTGAAACAATCAAATCATCAGAAGCTACTGTCCTAAGAAACCTAAAAAGACTTACTGATGTAACTATGAAAAGTAGAGCATCCGCTTCCACCTCCACAATAACTATTTCCAGATTTGAGTATGAGTACTTAAAAGGACGTGCAGGACAGGCAGTTGAAATTGCTGATAAGAAAGTTGAAGCAGCTGAGGCTTGGGTAAAAGCTTTGCAAGCAAGTGAAAAGGAGATCTCAATGAAGACAGAGGTCATCAGAAAGGAAATCCAAGAGCTTAAGATGGAAGAAGAGCAAAAAGGCCTGAAAATGGAGCATTCACCTTCCGTAAGAATGTTGGTCGATATGCAGTTGCAGAAATGGGAGGAGATACATGGAAAAGACCTGGAGCAATCTCCGAACAGTTCACGTACAAAATCCAACTCAATAAGTGGAAAAATGACACCAGCTAGACGAGCTAAGTTCAGAAAGTCAGCATCTCCTGCACCTCGAACACCTAGAGCTTCTTCCTTCGCGGTTAGGAGAAGAAGAAAGGTAATACCAAACATAGCTAAGTTATTTATTAGCAAGAGCAATGATGAAAACCTGTAAGCTATATTATTGCAGCTGCAAATACTTGCCAAAGTTTTCTGATGTAAAAGATATGATCCCACTAAATCCTAGT</gDNA_template>
            <first_frame> R  Q  L  S  V  H  G  F  N  G  R  C  E  E  *  A  Q  M  H  L  R  G  I  S  S  I  K  E  K  G  *  Q  G  R  L  D  N  S  E  P  Q  H  E  A  S  E  G  K  S  Q  T  G  S  C  I  P  Q  *  R  K  S  N  L  Y  C  F  K  F  I  T  Q  S  *  T  I  D  K  *  S  *  R  I  *  E  R  K  R  Q  C  H  *  G  S  C  K  S  R  R  R  N  T  E  N  T  I  *  N  S  V  G  R  G  K  M  G  S  C  N  T  R  A  *  N  N  Q  I  I  R  S  Y  C  P  K  K  P  K  K  T  Y  *  C  N  Y  E  K  *  S  I  R  F  H  L  H  N  N  Y  F  Q  I  *  V  *  V  L  K  R  T  C  R  T  G  S  *  N  C  *  *  E  S  *  S  S  *  G  L  G  K  S  F  A  S  K  *  K  G  D  L  N  E  D  R  G  H  Q  K  G  N  P  R  A  *  D  G  R  R  A  K  R  P  E  N  G  A  F  T  F  R  K  N  V  G  R  Y  A  V  A  E  M  G  G  D  T  W  K  R  P  G  A  I  S  E  Q  F  T  Y  K  I  Q  L  N  K  W  K  N  D  T  S  *  T  S  *  V  Q  K  V  S  I  S  C  T  S  N  T  *  S  F  F  L  R  G  *  E  K  K  K  G  N  T  K  H  S  *  V  I  Y  *  Q  E  Q  *  *  K  P  V  S  Y  I  I  A  A  A  N  T  C  Q  S  F  L  M  *  K  I  *  S  H  *  I  L   </first_frame>
            <second_frame>  D  S  F  Q  F  M  G  S  M  D  V  V  R  N  E  L  K  C  I  S  E  E  S  A  R  L  K  K  K  G  N  K  A  D  S  T  I  Q  N  L  N  T  K  L  L  R  A  K  A  K  L  E  A  A  S  H  N  E  G  K  A  T  S  I  A  S  S  L  L  L  S  L  E  Q  L  T  N  E  A  E  E  S  E  K  E  R  D  N  A  I  E  E  A  A  K  V  E  E  E  I  Q  K  T  Q  S  E  T  V  L  A  E  E  R  W  E  A  A  I  Q  E  L  E  T  I  K  S  S  E  A  T  V  L  R  N  L  K  R  L  T  D  V  T  M  K  S  R  A  S  A  S  T  S  T  I  T  I  S  R  F  E  Y  E  Y  L  K  G  R  A  G  Q  A  V  E  I  A  D  K  K  V  E  A  A  E  A  W  V  K  A  L  Q  A  S  E  K  E  I  S  M  K  T  E  V  I  R  K  E  I  Q  E  L  K  M  E  E  E  Q  K  G  L  K  M  E  H  S  P  S  V  R  M  L  V  D  M  Q  L  Q  K  W  E  E  I  H  G  K  D  L  E  Q  S  P  N  S  S  R  T  K  S  N  S  I  S  G  K  M  T  P  A  R  R  A  K  F  R  K  S  A  S  P  A  P  R  T  P  R  A  S  S  F  A  V  R  R  R  R  K  V  I  P  N  I  A  K  L  F  I  S  K  S  N  D  E  N  L  *  A  I  L  L  Q  L  Q  I  L  A  K  V  F  *  C  K  R  Y  D  P  T  K  S  *  </second_frame>
            <third_frame>   T  A  F  S  S  W  V  Q  W  T  L  *  G  M  S  S  N  A  S  Q  R  N  Q  L  D  *  R  K  R  V  T  R  Q  T  R  Q  F  R  T  S  T  R  S  F  *  G  Q  K  P  N  W  K  L  H  P  T  M  K  E  K  Q  P  L  L  L  Q  V  Y  Y  S  V  L  N  N  *  Q  M  K  L  K  N  L  R  K  K  E  T  M  P  L  R  K  L  Q  K  S  K  K  K  Y  R  K  H  N  L  K  Q  C  W  P  R  K  D  G  K  L  Q  Y  K  S  L  K  Q  S  N  H  Q  K  L  L  S  *  E  T  *  K  D  L  L  M  *  L  *  K  V  E  H  P  L  P  P  P  Q  *  L  F  P  D  L  S  M  S  T  *  K  D  V  Q  D  R  Q  L  K  L  L  I  R  K  L  K  Q  L  R  L  G  *  K  L  C  K  Q  V  K  R  R  S  Q  *  R  Q  R  S  S  E  R  K  S  K  S  L  R  W  K  K  S  K  K  A  *  K  W  S  I  H  L  P  *  E  C  W  S  I  C  S  C  R  N  G  R  R  Y  M  E  K  T  W  S  N  L  R  T  V  H  V  Q  N  P  T  Q  *  V  E  K  *  H  Q  L  D  E  L  S  S  E  S  Q  H  L  L  H  L  E  H  L  E  L  L  P  S  R  L  G  E  E  E  R  *  Y  Q  T  *  L  S  Y  L  L  A  R  A  M  M  K  T  C  K  L  Y  Y  C  S  C  K  Y  L  P  K  F  S  D  V  K  D  M  I  P  L  N  P  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011O23.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86435" stop="85494"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>939</number_coding_nucleotides>
                  <number_encoded_amino_acids>313</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSFQFMGSMDVVRNELKCISEESARLKKKGNKADSTIQNLNTKLLRAKAKLEAASHNEGKATSIASSLLLSLEQLTNEAEESEKERDNAIEEAAKVEEEIQKTQSETVLAEERWEAAIQELETIKSSEATVLRNLKRLTDVTMKSRASASTSTITISRFEYEYLKGRAGQAVEIADKKVEAAEAWVKALQASEKEISMKTEVIRKEIQELKMEEEQKGLKMEHSPSVRMLVDMQLQKWEEIHGKDLEQSPNSSRTKSNSISGKMTPARRAKFRKSASPAPRTPRASSFAVRRRRKVIPNIAKLFISKSNDENL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="87829" PGL_stop="86733"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87829" e_stop="87569"/>
            <exon e_start="87443" e_stop="87321"/>
            <exon e_start="87248" e_stop="86853"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.446" e_score="0.896"/>
          <exon-intron don_prob="0.993" acc_prob="0.795" e_score="0.992"/>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.896">
            <gDNA_exon_boundary e_start="87829" e_stop="87569" e_length="261"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.446">
            <gDNA_intron_boundary i_start="87568" i_stop="87444" i_length="125"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="87443" e_stop="87321" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.795">
            <gDNA_intron_boundary i_start="87320" i_stop="87249" i_length="72"/>
          </intron>
          <exon e_serial="3" e_score="0.960">
            <gDNA_exon_boundary e_start="87248" e_stop="86853" e_length="396"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87829" stop="87569"/>
              <exon start="87443" stop="87321"/>
              <exon start="87248" stop="86853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87828" stop="87569"/>
              <exon start="87443" stop="87321"/>
              <exon start="87248" stop="87196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355706" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAAAGACGATAAAACTTTCTTGTTTTGCTGATTAGACGGAGTGAAGGGTAAGTAAATCATTTTGTGCCACTAGATTGATAGTTTTGAGTTGCCCCTTGGAGGAAAAGACAAGATTTTTGCTTGTAATAGCAGCCAATCATCAATAGCTTTATCCCTCCTCCTCAATTTTTCCCTTTATTTTTATGGAGCTCATAGCACCTGCTCCAACTGGCAATTCCAACATCATTTTTCTGATGTACTTTCCACCAACCATTAGCAG : AGCAATCCAGAAGGAGGGGAGAGTTTCATGAAAGAGAGCTTAGGGTCATCAGTTAAGGCAGCCATTGATTTGTACAAAGGAAATTCTGCAATGAACCAATCCTCAATTACCAAGTCTTTAGAG : AAGCCATATGCAAGAACCAGCCAACTTCACATAGCAAAAAGGGACATGGGACGACTGGGTGAGAGCAGAAAAGTTGCAGAGGTAGAAAAAGCCCAAGCAGAAACTGAGCTTTTGGACGCGAGAAAGATGGTGAAGGAGCTAAGTTCAAGGATAGAAGAGTTGAATTCAAGATTAAGTGTCCAGAATCAAGATATGGAGAAACTAAAGACGGCAAAAAGAGGGGGAAATTGGGGGATGCCACTTCGCAATCATCAGAATAATCAGCACTCCAAAGTAGTAGCAGAGTTGGTATATGCAAAAGAAGATCTGATTAAGCTTAAACAAGATATGGCTTCTATCGTAGAAGAAAAAAGAAGGGCAGAGCAAGATATAGAAACCTCTAATTTGAAAATGCAA</gDNA_template>
            <first_frame> R  K  D  D  K  T  F  L  F  C  *  L  D  G  V  K  G  K  *  I  I  L  C  H  *  I  D  S  F  E  L  P  L  G  G  K  D  K  I  F  A  C  N  S  S  Q  S  S  I  A  L  S  L  L  L  N  F  S  L  Y  F  Y  G  A  H  S  T  C  S  N  W  Q  F  Q  H  H  F  S  D  V  L  S  T  N  H  *  Q  :  S  N  P  E  G  G  E  S  F  M  K  E  S  L  G  S  S  V  K  A  A  I  D  L  Y  K  G  N  S  A  M  N  Q  S  S  I  T  K  S  L  E  :  K  P  Y  A  R  T  S  Q  L  H  I  A  K  R  D  M  G  R  L  G  E  S  R  K  V  A  E  V  E  K  A  Q  A  E  T  E  L  L  D  A  R  K  M  V  K  E  L  S  S  R  I  E  E  L  N  S  R  L  S  V  Q  N  Q  D  M  E  K  L  K  T  A  K  R  G  G  N  W  G  M  P  L  R  N  H  Q  N  N  Q  H  S  K  V  V  A  E  L  V  Y  A  K  E  D  L  I  K  L  K  Q  D  M  A  S  I  V  E  E  K  R  R  A  E  Q  D  I  E  T  S  N  L  K  M  Q </first_frame>
            <second_frame>  E  K  T  I  K  L  S  C  F  A  D  *  T  E  *  R  V  S  K  S  F  C  A  T  R  L  I  V  L  S  C  P  L  E  E  K  T  R  F  L  L  V  I  A  A  N  H  Q  *  L  Y  P  S  S  S  I  F  P  F  I  F  M  E  L  I  A  P  A  P  T  G  N  S  N  I  I  F  L  M  Y  F  P  P  T  I  S  R :   A  I  Q  K  E  G  R  V  S  *  K  R  A  *  G  H  Q  L  R  Q  P  L  I  C  T  K  E  I  L  Q  *  T  N  P  Q  L  P  S  L  *  R :   S  H  M  Q  E  P  A  N  F  T  *  Q  K  G  T  W  D  D  W  V  R  A  E  K  L  Q  R  *  K  K  P  K  Q  K  L  S  F  W  T  R  E  R  W  *  R  S  *  V  Q  G  *  K  S  *  I  Q  D  *  V  S  R  I  K  I  W  R  N  *  R  R  Q  K  E  G  E  I  G  G  C  H  F  A  I  I  R  I  I  S  T  P  K  *  *  Q  S  W  Y  M  Q  K  K  I  *  L  S  L  N  K  I  W  L  L  S  *  K  K  K  E  G  Q  S  K  I  *  K  P  L  I  *  K  C   </second_frame>
            <third_frame>   K  R  R  *  N  F  L  V  L  L  I  R  R  S  E  G  *  V  N  H  F  V  P  L  D  *  *  F  *  V  A  P  W  R  K  R  Q  D  F  C  L  *  *  Q  P  I  I  N  S  F  I  P  P  P  Q  F  F  P  L  F  L  W  S  S  *  H  L  L  Q  L  A  I  P  T  S  F  F  *  C  T  F  H  Q  P  L  A   : E  Q  S  R  R  R  G  E  F  H  E  R  E  L  R  V  I  S  *  G  S  H  *  F  V  Q  R  K  F  C  N  E  P  I  L  N  Y  Q  V  F  R   : E  A  I  C  K  N  Q  P  T  S  H  S  K  K  G  H  G  T  T  G  *  E  Q  K  S  C  R  G  R  K  S  P  S  R  N  *  A  F  G  R  E  K  D  G  E  G  A  K  F  K  D  R  R  V  E  F  K  I  K  C  P  E  S  R  Y  G  E  T  K  D  G  K  K  R  G  K  L  G  D  A  T  S  Q  S  S  E  *  S  A  L  Q  S  S  S  R  V  G  I  C  K  R  R  S  D  *  A  *  T  R  Y  G  F  Y  R  R  R  K  K  K  G  R  A  R  Y  R  N  L  *  F  E  N  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011O23.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87571" stop="87569"/>
                    <exon start="87443" stop="87321"/>
                    <exon start="87248" stop="86853"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSNPEGGESFMKESLGSSVKAAIDLYKGNSAMNQSSITKSLEKPYARTSQLHIAKRDMGRLGESRKVAEVEKAQAETELLDARKMVKELSSRIEELNSRLSVQNQDMEKLKTAKRGGNWGMPLRNHQNNQHSKVVAELVYAKEDLIKLKQDMASIVEEKRRAEQDIETSNLKMQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="87546" e_stop="87321"/>
            <exon e_start="87248" e_stop="86733"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.795" e_score="0.996"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="87546" e_stop="87321" e_length="226"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.795">
            <gDNA_intron_boundary i_start="87320" i_stop="87249" i_length="72"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="87248" e_stop="86733" e_length="516"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87546" stop="87321"/>
              <exon start="87248" stop="86733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342381" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTATATTGTGCATATAGTTCTTCCACATATGTATATGAAGTTCCTAAGATTTTGCCTTAGCAGCAGACACAGCTCCATATTCTCTTTTGATGCCAATTTATAGAGCAATCCAGAAGGAGGGGAGAGTTTCATGAAAGAGAGCTTAGGGTCATCAGTTAAGGCAGCCATTGATTTGTACAAAGGAAATTCTGCAATGAACCAATCCTCAATTACCAAGTCTTTAGAG : AAGCCATATGCAAGAACCAGCCAACTTCACATAGCAAAAAGGGACATGGGACGACTGGGTGAGAGCAGAAAAGTTGCAGAGGTAGAAAAAGCCCAAGCAGAAACTGAGCTTTTGGACGCGAGAAAGATGGTGAAGGAGCTAAGTTCAAGGATAGAAGAGTTGAATTCAAGATTAAGTGTCCAGAATCAAGATATGGAGAAACTAAAGACGGCAAAAAGAGGGGGAAATTGGGGGATGCCACTTCGCAATCATCAGAATAATCAGCACTCCAAAGTAGTAGCAGAGTTGGTATATGCAAAAGAAGATCTGATTAAGCTTAAACAAGATATGGCTTCTATCGTAGAAGAAAAAAGAAGGGCAGAGCAAGATATAGAAACCTCTAATTTGAAAATGCAATCTTTTGCAAGCAAAGTAGAAGCGTTAAGGAAGGAAGTTGAGGAACTTAATGAAGAGCTCGTGCTAGTTGAGCTAGCTCGAATAGAGGCAATCAAAGAATACAGAGCAATTGAAGCTCAA</gDNA_template>
            <first_frame> L  Y  C  A  Y  S  S  S  T  Y  V  Y  E  V  P  K  I  L  P  *  Q  Q  T  Q  L  H  I  L  F  *  C  Q  F  I  E  Q  S  R  R  R  G  E  F  H  E  R  E  L  R  V  I  S  *  G  S  H  *  F  V  Q  R  K  F  C  N  E  P  I  L  N  Y  Q  V  F  R   : E  A  I  C  K  N  Q  P  T  S  H  S  K  K  G  H  G  T  T  G  *  E  Q  K  S  C  R  G  R  K  S  P  S  R  N  *  A  F  G  R  E  K  D  G  E  G  A  K  F  K  D  R  R  V  E  F  K  I  K  C  P  E  S  R  Y  G  E  T  K  D  G  K  K  R  G  K  L  G  D  A  T  S  Q  S  S  E  *  S  A  L  Q  S  S  S  R  V  G  I  C  K  R  R  S  D  *  A  *  T  R  Y  G  F  Y  R  R  R  K  K  K  G  R  A  R  Y  R  N  L  *  F  E  N  A  I  F  C  K  Q  S  R  S  V  K  E  G  S  *  G  T  *  *  R  A  R  A  S  *  A  S  S  N  R  G  N  Q  R  I  Q  S  N  *  S  S  </first_frame>
            <second_frame>  Y  I  V  H  I  V  L  P  H  M  Y  M  K  F  L  R  F  C  L  S  S  R  H  S  S  I  F  S  F  D  A  N  L  *  S  N  P  E  G  G  E  S  F  M  K  E  S  L  G  S  S  V  K  A  A  I  D  L  Y  K  G  N  S  A  M  N  Q  S  S  I  T  K  S  L  E  :  K  P  Y  A  R  T  S  Q  L  H  I  A  K  R  D  M  G  R  L  G  E  S  R  K  V  A  E  V  E  K  A  Q  A  E  T  E  L  L  D  A  R  K  M  V  K  E  L  S  S  R  I  E  E  L  N  S  R  L  S  V  Q  N  Q  D  M  E  K  L  K  T  A  K  R  G  G  N  W  G  M  P  L  R  N  H  Q  N  N  Q  H  S  K  V  V  A  E  L  V  Y  A  K  E  D  L  I  K  L  K  Q  D  M  A  S  I  V  E  E  K  R  R  A  E  Q  D  I  E  T  S  N  L  K  M  Q  S  F  A  S  K  V  E  A  L  R  K  E  V  E  E  L  N  E  E  L  V  L  V  E  L  A  R  I  E  A  I  K  E  Y  R  A  I  E  A  Q </second_frame>
            <third_frame>   I  L  C  I  *  F  F  H  I  C  I  *  S  S  *  D  F  A  L  A  A  D  T  A  P  Y  S  L  L  M  P  I  Y  R  A  I  Q  K  E  G  R  V  S  *  K  R  A  *  G  H  Q  L  R  Q  P  L  I  C  T  K  E  I  L  Q  *  T  N  P  Q  L  P  S  L  *  R :   S  H  M  Q  E  P  A  N  F  T  *  Q  K  G  T  W  D  D  W  V  R  A  E  K  L  Q  R  *  K  K  P  K  Q  K  L  S  F  W  T  R  E  R  W  *  R  S  *  V  Q  G  *  K  S  *  I  Q  D  *  V  S  R  I  K  I  W  R  N  *  R  R  Q  K  E  G  E  I  G  G  C  H  F  A  I  I  R  I  I  S  T  P  K  *  *  Q  S  W  Y  M  Q  K  K  I  *  L  S  L  N  K  I  W  L  L  S  *  K  K  K  E  G  Q  S  K  I  *  K  P  L  I  *  K  C  N  L  L  Q  A  K  *  K  R  *  G  R  K  L  R  N  L  M  K  S  S  C  *  L  S  *  L  E  *  R  Q  S  K  N  T  E  Q  L  K  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011O23.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87443" stop="87321"/>
                    <exon start="87248" stop="86733"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNPEGGESFMKESLGSSVKAAIDLYKGNSAMNQSSITKSLEKPYARTSQLHIAKRDMGRLGESRKVAEVEKAQAETELLDARKMVKELSSRIEELNSRLSVQNQDMEKLKTAKRGGNWGMPLRNHQNNQHSKVVAELVYAKEDLIKLKQDMASIVEEKRRAEQDIETSNLKMQSFASKVEALRKEVEELNEELVLVELARIEAIKEYRAIEAQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="93976" PGL_stop="94170"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93976" e_stop="94170"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="93976" e_stop="94170" e_length="195"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93976" stop="94170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93976" stop="94170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221216" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTTCTGATTTGGGTCCTTTGAAGGATAATGAGCGGAAGGATTTGAACTATGCTGTAAAGGAGTATTTACTATTAGCAGGATATCGCTTGACTGCAATGACATTATTGGAAGAGGTAGTAATTGATTGAAAGGGGACTTGCTGATTTCTTGATGTTCATCACTAAACTGAAGAAGAATTGCATTTTATTCAAC</gDNA_template>
            <first_frame> L  F  L  I  W  V  L  *  R  I  M  S  G  R  I  *  T  M  L  *  R  S  I  Y  Y  *  Q  D  I  A  *  L  Q  *  H  Y  W  K  R  *  *  L  I  E  R  G  L  A  D  F  L  M  F  I  T  K  L  K  K  N  C  I  L  F  N </first_frame>
            <second_frame>  F  F  *  F  G  S  F  E  G  *  *  A  E  G  F  E  L  C  C  K  G  V  F  T  I  S  R  I  S  L  D  C  N  D  I  I  G  R  G  S  N  *  L  K  G  D  L  L  I  S  *  C  S  S  L  N  *  R  R  I  A  F  Y  S   </second_frame>
            <third_frame>   F  S  D  L  G  P  L  K  D  N  E  R  K  D  L  N  Y  A  V  K  E  Y  L  L  L  A  G  Y  R  L  T  A  M  T  L  L  E  E  V  V  I  D  *  K  G  T  C  *  F  L  D  V  H  H  *  T  E  E  E  L  H  F  I  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0011O23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="97592" PGL_stop="101515"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98000" e_stop="98137"/>
            <exon e_start="98224" e_stop="98438"/>
            <exon e_start="98554" e_stop="98671"/>
            <exon e_start="98758" e_stop="98890"/>
            <exon e_start="98986" e_stop="99181"/>
            <exon e_start="99260" e_stop="99365"/>
            <exon e_start="99444" e_stop="99584"/>
            <exon e_start="99679" e_stop="99802"/>
            <exon e_start="99920" e_stop="100403"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="0.981"/>
          <exon-intron don_prob="0.431" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.843" acc_prob="0.928" e_score="0.960"/>
          <exon-intron don_prob="0.979" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98000" e_stop="98137" e_length="138"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="98138" i_stop="98223" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98224" e_stop="98438" e_length="215"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.934">
            <gDNA_intron_boundary i_start="98439" i_stop="98553" i_length="115"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="98554" e_stop="98671" e_length="118"/>
          </exon>
          <intron i_serial="3" don_prob="0.948" acc_prob="0.978">
            <gDNA_intron_boundary i_start="98672" i_stop="98757" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="0.981">
            <gDNA_exon_boundary e_start="98758" e_stop="98890" e_length="133"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="98891" i_stop="98985" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="98986" e_stop="99181" e_length="196"/>
          </exon>
          <intron i_serial="5" don_prob="0.431" acc_prob="0.944">
            <gDNA_intron_boundary i_start="99182" i_stop="99259" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="0.960">
            <gDNA_exon_boundary e_start="99260" e_stop="99365" e_length="106"/>
          </exon>
          <intron i_serial="6" don_prob="0.843" acc_prob="0.928">
            <gDNA_intron_boundary i_start="99366" i_stop="99443" i_length="78"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="99444" e_stop="99584" e_length="141"/>
          </exon>
          <intron i_serial="7" don_prob="0.979" acc_prob="0.900">
            <gDNA_intron_boundary i_start="99585" i_stop="99678" i_length="94"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="99679" e_stop="99802" e_length="124"/>
          </exon>
          <intron i_serial="8" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="99803" i_stop="99919" i_length="117"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="99920" e_stop="100403" e_length="484"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98000" stop="98137"/>
              <exon start="98224" stop="98438"/>
              <exon start="98554" stop="98671"/>
              <exon start="98758" stop="98890"/>
              <exon start="98986" stop="99050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98001" stop="98137"/>
              <exon start="98224" stop="98415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98785" stop="98890"/>
              <exon start="98986" stop="99181"/>
              <exon start="99260" stop="99360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99313" stop="99365"/>
              <exon start="99444" stop="99584"/>
              <exon start="99679" stop="99802"/>
              <exon start="99920" stop="100403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704984" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCAATTGGTGTGTGATCCATCTGGAGTGGTAGTGGAAACAACAATCAAGGAACTTGTTCCAGCTTTAGTAAACTGGGGGAAGGAATTGGATCATTTACTACAAGTCTTACTATCTCATGCTTTGGGCTCTGCTCAG : CGTTGTCAACCACTTTCAGGGGTGGAAGGTTCTATCGAGTCACATCTTCGTGCTTTAGGAGAGAGAGAGCGATGGAACATAGATGTTCTGATGCGCTTACTGTCGGAGTTGTTTCCATTTGTACGCAAGAAAGCTATTGATACCTGTCCATTCCCATTGGTTTCGGACGATGAAAGACTAGTCTTTTCTACTTCAGTTCTTGAACAGTATGCTGG : AGGAAAGATGGACTGGCCTTCTTTTGAGTGGTTGCATATTGACTGCTTTTCAGCGTTGATTGAACTAGCCTCTCTATTACCTCAGAAGGAAGATAACCTAAGGAATCGAATCACGCGG : TTTTTATTGGCAGTTTCAGACCTGCTCGGGGAACCTTACCTGACACACATCATGCTACCTGTATTCTTGGTGGCAGTTGGTGATGATGGTGATTTATCATATTTCCCTGCAACGTGCCAATCAAGAATAAGAG : GTTTGAAACCGAAAACTGCAGTAGCTGAAAGACTTGCTACCATCGGTGTCCTGCCTCTTCTGCTGGCTGGTGTTTTAGGATCTCCTAGGAAGCATGAACTACTGACAGAGTACTTGAGAAATCTCTTGATTCAAACTTCAGGACAAGAGAGTCAGACAGTGAAGCGCGAGATTTTCTTTTCTGTTCGCTTTCTTTG : CACTTTCGATGAACATCACAATATGATTTTTAACATCCTCTGGGAAATGGTTGTGAGTTCTGAAATAAACATGAAGGCAACAGCTGCCAATCTTTTTAAAGTCATT : GTTCCATGTATTGATGCCAAGGTTGCCTCAACACATGTTTTGCCTGCTCTTGTAACGCTTGGTTCTGACCAAAACTTGAATGTGAAATATGCCAGTATTGATGCTTTTGGAGCTGTGGCGCAGCAGTATAAAAATGATGCG : ATTGTTGATAAAATACGTGTTCAAATGGATGCTTTTCTTGAGGATGGATCACATGAAGCTACGTTAGCTGTAGTTCGTGCATTGGTGATGGCAGTGCCACATACCACGGAGGGACTTAGAGATT : ATTTGTTGTCCAAGATTTTCTTACTTACAGCAACACCTCCTCCTTCAAGTGACATGATGCGTCGTCGTGAGAGAGCCAACACATTTTGTGAATCAATTCGTGCTCTTGATGCTACTGGTTTGCTCCTTTTAATTATTCTTCTTCTCTTTCATTCATCTCTTTACTTTCTGAAGATATAAATGTTCTTCAAAATGATCAGCCTCCAGGTTTAGCTGCTTCTTGAGATAAATCAGAGTACAATATACTATGTATTGCAGTGGACTGATACAGGTGGTTGATATCCTGATTTTTGGTTGTGAAACTACCTTTAGCAATCATGGTTGATCAAAGTGATTAGTTGAGTTTTTTCCCATCTAAGAAGAGTTAATTACCTAAAAATTGACCGATTTTTTACCTAAATACATGCCGAAGTTAACATAAATGGTTGATTGTGATTTGTTGGGTTTAGTGTGCATCCTTTTCTTGTTCATATTAATACAAGTGA</gDNA_template>
            <first_frame> F  Q  L  V  C  D  P  S  G  V  V  V  E  T  T  I  K  E  L  V  P  A  L  V  N  W  G  K  E  L  D  H  L  L  Q  V  L  L  S  H  A  L  G  S  A  Q  :  R  C  Q  P  L  S  G  V  E  G  S  I  E  S  H  L  R  A  L  G  E  R  E  R  W  N  I  D  V  L  M  R  L  L  S  E  L  F  P  F  V  R  K  K  A  I  D  T  C  P  F  P  L  V  S  D  D  E  R  L  V  F  S  T  S  V  L  E  Q  Y  A  G :   G  K  M  D  W  P  S  F  E  W  L  H  I  D  C  F  S  A  L  I  E  L  A  S  L  L  P  Q  K  E  D  N  L  R  N  R  I  T  R  :  F  L  L  A  V  S  D  L  L  G  E  P  Y  L  T  H  I  M  L  P  V  F  L  V  A  V  G  D  D  G  D  L  S  Y  F  P  A  T  C  Q  S  R  I  R   : G  L  K  P  K  T  A  V  A  E  R  L  A  T  I  G  V  L  P  L  L  L  A  G  V  L  G  S  P  R  K  H  E  L  L  T  E  Y  L  R  N  L  L  I  Q  T  S  G  Q  E  S  Q  T  V  K  R  E  I  F  F  S  V  R  F  L  C :   T  F  D  E  H  H  N  M  I  F  N  I  L  W  E  M  V  V  S  S  E  I  N  M  K  A  T  A  A  N  L  F  K  V  I  :  V  P  C  I  D  A  K  V  A  S  T  H  V  L  P  A  L  V  T  L  G  S  D  Q  N  L  N  V  K  Y  A  S  I  D  A  F  G  A  V  A  Q  Q  Y  K  N  D  A  :  I  V  D  K  I  R  V  Q  M  D  A  F  L  E  D  G  S  H  E  A  T  L  A  V  V  R  A  L  V  M  A  V  P  H  T  T  E  G  L  R  D   : Y  L  L  S  K  I  F  L  L  T  A  T  P  P  P  S  S  D  M  M  R  R  R  E  R  A  N  T  F  C  E  S  I  R  A  L  D  A  T  G  L  L  L  L  I  I  L  L  L  F  H  S  S  L  Y  F  L  K  I  *  M  F  F  K  M  I  S  L  Q  V  *  L  L  L  E  I  N  Q  S  T  I  Y  Y  V  L  Q  W  T  D  T  G  G  *  Y  P  D  F  W  L  *  N  Y  L  *  Q  S  W  L  I  K  V  I  S  *  V  F  S  H  L  R  R  V  N  Y  L  K  I  D  R  F  F  T  *  I  H  A  E  V  N  I  N  G  *  L  *  F  V  G  F  S  V  H  P  F  L  V  H  I  N  T  S   </first_frame>
            <second_frame>  F  N  W  C  V  I  H  L  E  W  *  W  K  Q  Q  S  R  N  L  F  Q  L  *  *  T  G  G  R  N  W  I  I  Y  Y  K  S  Y  Y  L  M  L  W  A  L  L  S :   V  V  N  H  F  Q  G  W  K  V  L  S  S  H  I  F  V  L  *  E  R  E  S  D  G  T  *  M  F  *  C  A  Y  C  R  S  C  F  H  L  Y  A  R  K  L  L  I  P  V  H  S  H  W  F  R  T  M  K  D  *  S  F  L  L  Q  F  L  N  S  M  L   : E  E  R  W  T  G  L  L  L  S  G  C  I  L  T  A  F  Q  R  *  L  N  *  P  L  Y  Y  L  R  R  K  I  T  *  G  I  E  S  R  G :   F  Y  W  Q  F  Q  T  C  S  G  N  L  T  *  H  T  S  C  Y  L  Y  S  W  W  Q  L  V  M  M  V  I  Y  H  I  S  L  Q  R  A  N  Q  E  *  E  :  V  *  N  R  K  L  Q  *  L  K  D  L  L  P  S  V  S  C  L  F  C  W  L  V  F  *  D  L  L  G  S  M  N  Y  *  Q  S  T  *  E  I  S  *  F  K  L  Q  D  K  R  V  R  Q  *  S  A  R  F  S  F  L  F  A  F  F   : A  L  S  M  N  I  T  I  *  F  L  T  S  S  G  K  W  L  *  V  L  K  *  T  *  R  Q  Q  L  P  I  F  L  K  S  L :   F  H  V  L  M  P  R  L  P  Q  H  M  F  C  L  L  L  *  R  L  V  L  T  K  T  *  M  *  N  M  P  V  L  M  L  L  E  L  W  R  S  S  I  K  M  M  R :   L  L  I  K  Y  V  F  K  W  M  L  F  L  R  M  D  H  M  K  L  R  *  L  *  F  V  H  W  *  W  Q  C  H  I  P  R  R  D  L  E  I  :  I  C  C  P  R  F  S  Y  L  Q  Q  H  L  L  L  Q  V  T  *  C  V  V  V  R  E  P  T  H  F  V  N  Q  F  V  L  L  M  L  L  V  C  S  F  *  L  F  F  F  S  F  I  H  L  F  T  F  *  R  Y  K  C  S  S  K  *  S  A  S  R  F  S  C  F  L  R  *  I  R  V  Q  Y  T  M  Y  C  S  G  L  I  Q  V  V  D  I  L  I  F  G  C  E  T  T  F  S  N  H  G  *  S  K  *  L  V  E  F  F  P  I  *  E  E  L  I  T  *  K  L  T  D  F  L  P  K  Y  M  P  K  L  T  *  M  V  D  C  D  L  L  G  L  V  C  I  L  F  L  F  I  L  I  Q  V  </second_frame>
            <third_frame>   S  I  G  V  *  S  I  W  S  G  S  G  N  N  N  Q  G  T  C  S  S  F  S  K  L  G  E  G  I  G  S  F  T  T  S  L  T  I  S  C  F  G  L  C  S   : A  L  S  T  T  F  R  G  G  R  F  Y  R  V  T  S  S  C  F  R  R  E  R  A  M  E  H  R  C  S  D  A  L  T  V  G  V  V  S  I  C  T  Q  E  S  Y  *  Y  L  S  I  P  I  G  F  G  R  *  K  T  S  L  F  Y  F  S  S  *  T  V  C  W  :  R  K  D  G  L  A  F  F  *  V  V  A  Y  *  L  L  F  S  V  D  *  T  S  L  S  I  T  S  E  G  R  *  P  K  E  S  N  H  A   : V  F  I  G  S  F  R  P  A  R  G  T  L  P  D  T  H  H  A  T  C  I  L  G  G  S  W  *  *  W  *  F  I  I  F  P  C  N  V  P  I  K  N  K  R :   F  E  T  E  N  C  S  S  *  K  T  C  Y  H  R  C  P  A  S  S  A  G  W  C  F  R  I  S  *  E  A  *  T  T  D  R  V  L  E  K  S  L  D  S  N  F  R  T  R  E  S  D  S  E  A  R  D  F  L  F  C  S  L  S  L  :  H  F  R  *  T  S  Q  Y  D  F  *  H  P  L  G  N  G  C  E  F  *  N  K  H  E  G  N  S  C  Q  S  F  *  S  H   : C  S  M  Y  *  C  Q  G  C  L  N  T  C  F  A  C  S  C  N  A  W  F  *  P  K  L  E  C  E  I  C  Q  Y  *  C  F  W  S  C  G  A  A  V  *  K  *  C   : D  C  *  *  N  T  C  S  N  G  C  F  S  *  G  W  I  T  *  S  Y  V  S  C  S  S  C  I  G  D  G  S  A  T  Y  H  G  G  T  *  R  L :   F  V  V  Q  D  F  L  T  Y  S  N  T  S  S  F  K  *  H  D  A  S  S  *  E  S  Q  H  I  L  *  I  N  S  C  S  *  C  Y  W  F  A  P  F  N  Y  S  S  S  L  S  F  I  S  L  L  S  E  D  I  N  V  L  Q  N  D  Q  P  P  G  L  A  A  S  *  D  K  S  E  Y  N  I  L  C  I  A  V  D  *  Y  R  W  L  I  S  *  F  L  V  V  K  L  P  L  A  I  M  V  D  Q  S  D  *  L  S  F  F  P  S  K  K  S  *  L  P  K  N  *  P  I  F  Y  L  N  T  C  R  S  *  H  K  W  L  I  V  I  C  W  V  *  C  A  S  F  S  C  S  Y  *  Y  K  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011O23.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98000" stop="98137"/>
                    <exon start="98224" stop="98438"/>
                    <exon start="98554" stop="98671"/>
                    <exon start="98758" stop="98890"/>
                    <exon start="98986" stop="99181"/>
                    <exon start="99260" stop="99365"/>
                    <exon start="99444" stop="99584"/>
                    <exon start="99679" stop="99802"/>
                    <exon start="99920" stop="100098"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1347</number_coding_nucleotides>
                  <number_encoded_amino_acids>449</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQLVCDPSGVVVETTIKELVPALVNWGKELDHLLQVLLSHALGSAQRCQPLSGVEGSIESHLRALGERERWNIDVLMRLLSELFPFVRKKAIDTCPFPLVSDDERLVFSTSVLEQYAGGKMDWPSFEWLHIDCFSALIELASLLPQKEDNLRNRITRFLLAVSDLLGEPYLTHIMLPVFLVAVGDDGDLSYFPATCQSRIRGLKPKTAVAERLATIGVLPLLLAGVLGSPRKHELLTEYLRNLLIQTSGQESQTVKREIFFSVRFLCTFDEHHNMIFNILWEMVVSSEINMKATAANLFKVIVPCIDAKVASTHVLPALVTLGSDQNLNVKYASIDAFGAVAQQYKNDAIVDKIRVQMDAFLEDGSHEATLAVVRALVMAVPHTTEGLRDYLLSKIFLLTATPPPSSDMMRRRERANTFCESIRALDATGLLLLIILLLFHSSLYFLKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="99967" e_stop="100036"/>
            <exon e_start="100806" e_stop="101515"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99967" e_stop="100036" e_length="70"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.977">
            <gDNA_intron_boundary i_start="100037" i_stop="100805" i_length="769"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="100806" e_stop="101515" e_length="710"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99967" stop="100036"/>
              <exon start="100806" stop="101508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100896" stop="101515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100896" stop="101373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465457" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTGACATGATGCGTCGTCGTGAGAGAGCCAACACATTTTGTGAATCAATTCGTGCTCTTGATGCTACTG : ATCTTTCTGCTTCAAGTGTCAGAGACTTCCTTCTACCTGCAATTCAAAATCTGTTAAAAGATGCTGATTCTCTTGATCCAGCACACAAAGAAGCTCTGGAGATCGTAATGAGGGAAAGATCTGGTGGAACATTTGATACGATTAGTAAGGTAATGGGTGCTCATCTGGGAATTGCGTCATCAGTAAGCAGCTTCTTTGGCGAAGGTGGTTTACTAGGGAAAAGGGAAGCTGGAGATCCAACATCACCACCAGCACCAGTGGAAGTTGAACCTCTGAGGCCTGTCCTCACACATGCAGCACCAGCAGAAGACACTAGATTTAGGCGGATCATGAGAGGTGGTTTTACAGACATGCTCAGAGGAAAAGCAAAGGGCGCTGGGGATACTCCCCCAAGTCAATGATAATGGCTCTTTCATCTGCAGGAGAATTAAAAAGGAAAGTAAGTTCTGTATGTTGTGCAATAGACTACAATGCTTCCATTTGTTGATTCTGCGCTGAAGTTTTCCCTTCACAGGGATGAAATTTTGCAATTTATTTCATTCTTTATGTACAAGAAACGTAATGAATTCGACAACAAAACGAGGAGAAAGTGTATACATTTACTAGTTGTACAAAATGATATGGGAGATTCATAGCTGTCTTGTTTTCATGTACTCTAACCAGTAACCAACAGACCTTTGATAATATACATATATTAAAATAGATACATA</gDNA_template>
            <first_frame> S  D  M  M  R  R  R  E  R  A  N  T  F  C  E  S  I  R  A  L  D  A  T   : D  L  S  A  S  S  V  R  D  F  L  L  P  A  I  Q  N  L  L  K  D  A  D  S  L  D  P  A  H  K  E  A  L  E  I  V  M  R  E  R  S  G  G  T  F  D  T  I  S  K  V  M  G  A  H  L  G  I  A  S  S  V  S  S  F  F  G  E  G  G  L  L  G  K  R  E  A  G  D  P  T  S  P  P  A  P  V  E  V  E  P  L  R  P  V  L  T  H  A  A  P  A  E  D  T  R  F  R  R  I  M  R  G  G  F  T  D  M  L  R  G  K  A  K  G  A  G  D  T  P  P  S  Q  *  *  W  L  F  H  L  Q  E  N  *  K  G  K  *  V  L  Y  V  V  Q  *  T  T  M  L  P  F  V  D  S  A  L  K  F  S  L  H  R  D  E  I  L  Q  F  I  S  F  F  M  Y  K  K  R  N  E  F  D  N  K  T  R  R  K  C  I  H  L  L  V  V  Q  N  D  M  G  D  S  *  L  S  C  F  H  V  L  *  P  V  T  N  R  P  L  I  I  Y  I  Y  *  N  R  Y  I </first_frame>
            <second_frame>  V  T  *  C  V  V  V  R  E  P  T  H  F  V  N  Q  F  V  L  L  M  L  L  :  I  F  L  L  Q  V  S  E  T  S  F  Y  L  Q  F  K  I  C  *  K  M  L  I  L  L  I  Q  H  T  K  K  L  W  R  S  *  *  G  K  D  L  V  E  H  L  I  R  L  V  R  *  W  V  L  I  W  E  L  R  H  Q  *  A  A  S  L  A  K  V  V  Y  *  G  K  G  K  L  E  I  Q  H  H  H  Q  H  Q  W  K  L  N  L  *  G  L  S  S  H  M  Q  H  Q  Q  K  T  L  D  L  G  G  S  *  E  V  V  L  Q  T  C  S  E  E  K  Q  R  A  L  G  I  L  P  Q  V  N  D  N  G  S  F  I  C  R  R  I  K  K  E  S  K  F  C  M  L  C  N  R  L  Q  C  F  H  L  L  I  L  R  *  S  F  P  F  T  G  M  K  F  C  N  L  F  H  S  L  C  T  R  N  V  M  N  S  T  T  K  R  G  E  S  V  Y  I  Y  *  L  Y  K  M  I  W  E  I  H  S  C  L  V  F  M  Y  S  N  Q  *  P  T  D  L  *  *  Y  T  Y  I  K  I  D  T   </second_frame>
            <third_frame>   *  H  D  A  S  S  *  E  S  Q  H  I  L  *  I  N  S  C  S  *  C  Y  * :   S  F  C  F  K  C  Q  R  L  P  S  T  C  N  S  K  S  V  K  R  C  *  F  S  *  S  S  T  Q  R  S  S  G  D  R  N  E  G  K  I  W  W  N  I  *  Y  D  *  *  G  N  G  C  S  S  G  N  C  V  I  S  K  Q  L  L  W  R  R  W  F  T  R  E  K  G  S  W  R  S  N  I  T  T  S  T  S  G  S  *  T  S  E  A  C  P  H  T  C  S  T  S  R  R  H  *  I  *  A  D  H  E  R  W  F  Y  R  H  A  Q  R  K  S  K  G  R  W  G  Y  S  P  K  S  M  I  M  A  L  S  S  A  G  E  L  K  R  K  V  S  S  V  C  C  A  I  D  Y  N  A  S  I  C  *  F  C  A  E  V  F  P  S  Q  G  *  N  F  A  I  Y  F  I  L  Y  V  Q  E  T  *  *  I  R  Q  Q  N  E  E  K  V  Y  T  F  T  S  C  T  K  *  Y  G  R  F  I  A  V  L  F  S  C  T  L  T  S  N  Q  Q  T  F  D  N  I  H  I  L  K  *  I  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011O23.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99967" stop="100036"/>
                    <exon start="100806" stop="101206"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDMMRRRERANTFCESIRALDATDLSASSVRDFLLPAIQNLLKDADSLDPAHKEALEIVMRERSGGTFDTISKVMGAHLGIASSVSSFFGEGGLLGKREAGDPTSPPAPVEVEPLRPVLTHAAPAEDTRFRRIMRGGFTDMLRGKAKGAGDTPPSQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="98220" e_stop="98438"/>
            <exon e_start="98554" e_stop="98671"/>
            <exon e_start="98758" e_stop="98890"/>
            <exon e_start="98986" e_stop="99181"/>
            <exon e_start="99260" e_stop="99365"/>
            <exon e_start="99444" e_stop="99584"/>
            <exon e_start="99679" e_stop="99802"/>
            <exon e_start="99920" e_stop="100403"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.934" e_score="0.995"/>
          <exon-intron don_prob="0.948" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.431" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.843" acc_prob="0.928" e_score="0.960"/>
          <exon-intron don_prob="0.979" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="98220" e_stop="98438" e_length="219"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.934">
            <gDNA_intron_boundary i_start="98439" i_stop="98553" i_length="115"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98554" e_stop="98671" e_length="118"/>
          </exon>
          <intron i_serial="2" don_prob="0.948" acc_prob="0.978">
            <gDNA_intron_boundary i_start="98672" i_stop="98757" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="98758" e_stop="98890" e_length="133"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="98891" i_stop="98985" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="98986" e_stop="99181" e_length="196"/>
          </exon>
          <intron i_serial="4" don_prob="0.431" acc_prob="0.944">
            <gDNA_intron_boundary i_start="99182" i_stop="99259" i_length="78"/>
          </intron>
          <exon e_serial="5" e_score="0.960">
            <gDNA_exon_boundary e_start="99260" e_stop="99365" e_length="106"/>
          </exon>
          <intron i_serial="5" don_prob="0.843" acc_prob="0.928">
            <gDNA_intron_boundary i_start="99366" i_stop="99443" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="99444" e_stop="99584" e_length="141"/>
          </exon>
          <intron i_serial="6" don_prob="0.979" acc_prob="0.900">
            <gDNA_intron_boundary i_start="99585" i_stop="99678" i_length="94"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="99679" e_stop="99802" e_length="124"/>
          </exon>
          <intron i_serial="7" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="99803" i_stop="99919" i_length="117"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="99920" e_stop="100403" e_length="484"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98220" stop="98438"/>
              <exon start="98554" stop="98671"/>
              <exon start="98758" stop="98890"/>
              <exon start="98986" stop="99030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98785" stop="98890"/>
              <exon start="98986" stop="99181"/>
              <exon start="99260" stop="99360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99313" stop="99365"/>
              <exon start="99444" stop="99584"/>
              <exon start="99679" stop="99802"/>
              <exon start="99920" stop="100403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704984" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAGCGTTGTCAACCACTTTCAGGGGTGGAAGGTTCTATCGAGTCACATCTTCGTGCTTTAGGAGAGAGAGAGCGATGGAACATAGATGTTCTGATGCGCTTACTGTCGGAGTTGTTTCCATTTGTACGCAAGAAAGCTATTGATACCTGTCCATTCCCATTGGTTTCGGACGATGAAAGACTAGTCTTTTCTACTTCAGTTCTTGAACAGTATGCTGG : AGGAAAGATGGACTGGCCTTCTTTTGAGTGGTTGCATATTGACTGCTTTTCAGCGTTGATTGAACTAGCCTCTCTATTACCTCAGAAGGAAGATAACCTAAGGAATCGAATCACGCGG : TTTTTATTGGCAGTTTCAGACCTGCTCGGGGAACCTTACCTGACACACATCATGCTACCTGTATTCTTGGTGGCAGTTGGTGATGATGGTGATTTATCATATTTCCCTGCAACGTGCCAATCAAGAATAAGAG : GTTTGAAACCGAAAACTGCAGTAGCTGAAAGACTTGCTACCATCGGTGTCCTGCCTCTTCTGCTGGCTGGTGTTTTAGGATCTCCTAGGAAGCATGAACTACTGACAGAGTACTTGAGAAATCTCTTGATTCAAACTTCAGGACAAGAGAGTCAGACAGTGAAGCGCGAGATTTTCTTTTCTGTTCGCTTTCTTTG : CACTTTCGATGAACATCACAATATGATTTTTAACATCCTCTGGGAAATGGTTGTGAGTTCTGAAATAAACATGAAGGCAACAGCTGCCAATCTTTTTAAAGTCATT : GTTCCATGTATTGATGCCAAGGTTGCCTCAACACATGTTTTGCCTGCTCTTGTAACGCTTGGTTCTGACCAAAACTTGAATGTGAAATATGCCAGTATTGATGCTTTTGGAGCTGTGGCGCAGCAGTATAAAAATGATGCG : ATTGTTGATAAAATACGTGTTCAAATGGATGCTTTTCTTGAGGATGGATCACATGAAGCTACGTTAGCTGTAGTTCGTGCATTGGTGATGGCAGTGCCACATACCACGGAGGGACTTAGAGATT : ATTTGTTGTCCAAGATTTTCTTACTTACAGCAACACCTCCTCCTTCAAGTGACATGATGCGTCGTCGTGAGAGAGCCAACACATTTTGTGAATCAATTCGTGCTCTTGATGCTACTGGTTTGCTCCTTTTAATTATTCTTCTTCTCTTTCATTCATCTCTTTACTTTCTGAAGATATAAATGTTCTTCAAAATGATCAGCCTCCAGGTTTAGCTGCTTCTTGAGATAAATCAGAGTACAATATACTATGTATTGCAGTGGACTGATACAGGTGGTTGATATCCTGATTTTTGGTTGTGAAACTACCTTTAGCAATCATGGTTGATCAAAGTGATTAGTTGAGTTTTTTCCCATCTAAGAAGAGTTAATTACCTAAAAATTGACCGATTTTTTACCTAAATACATGCCGAAGTTAACATAAATGGTTGATTGTGATTTGTTGGGTTTAGTGTGCATCCTTTTCTTGTTCATATTAATACAAGTGA</gDNA_template>
            <first_frame> P  A  L  S  T  T  F  R  G  G  R  F  Y  R  V  T  S  S  C  F  R  R  E  R  A  M  E  H  R  C  S  D  A  L  T  V  G  V  V  S  I  C  T  Q  E  S  Y  *  Y  L  S  I  P  I  G  F  G  R  *  K  T  S  L  F  Y  F  S  S  *  T  V  C  W  :  R  K  D  G  L  A  F  F  *  V  V  A  Y  *  L  L  F  S  V  D  *  T  S  L  S  I  T  S  E  G  R  *  P  K  E  S  N  H  A   : V  F  I  G  S  F  R  P  A  R  G  T  L  P  D  T  H  H  A  T  C  I  L  G  G  S  W  *  *  W  *  F  I  I  F  P  C  N  V  P  I  K  N  K  R :   F  E  T  E  N  C  S  S  *  K  T  C  Y  H  R  C  P  A  S  S  A  G  W  C  F  R  I  S  *  E  A  *  T  T  D  R  V  L  E  K  S  L  D  S  N  F  R  T  R  E  S  D  S  E  A  R  D  F  L  F  C  S  L  S  L  :  H  F  R  *  T  S  Q  Y  D  F  *  H  P  L  G  N  G  C  E  F  *  N  K  H  E  G  N  S  C  Q  S  F  *  S  H   : C  S  M  Y  *  C  Q  G  C  L  N  T  C  F  A  C  S  C  N  A  W  F  *  P  K  L  E  C  E  I  C  Q  Y  *  C  F  W  S  C  G  A  A  V  *  K  *  C   : D  C  *  *  N  T  C  S  N  G  C  F  S  *  G  W  I  T  *  S  Y  V  S  C  S  S  C  I  G  D  G  S  A  T  Y  H  G  G  T  *  R  L :   F  V  V  Q  D  F  L  T  Y  S  N  T  S  S  F  K  *  H  D  A  S  S  *  E  S  Q  H  I  L  *  I  N  S  C  S  *  C  Y  W  F  A  P  F  N  Y  S  S  S  L  S  F  I  S  L  L  S  E  D  I  N  V  L  Q  N  D  Q  P  P  G  L  A  A  S  *  D  K  S  E  Y  N  I  L  C  I  A  V  D  *  Y  R  W  L  I  S  *  F  L  V  V  K  L  P  L  A  I  M  V  D  Q  S  D  *  L  S  F  F  P  S  K  K  S  *  L  P  K  N  *  P  I  F  Y  L  N  T  C  R  S  *  H  K  W  L  I  V  I  C  W  V  *  C  A  S  F  S  C  S  Y  *  Y  K  * </first_frame>
            <second_frame>  Q  R  C  Q  P  L  S  G  V  E  G  S  I  E  S  H  L  R  A  L  G  E  R  E  R  W  N  I  D  V  L  M  R  L  L  S  E  L  F  P  F  V  R  K  K  A  I  D  T  C  P  F  P  L  V  S  D  D  E  R  L  V  F  S  T  S  V  L  E  Q  Y  A  G :   G  K  M  D  W  P  S  F  E  W  L  H  I  D  C  F  S  A  L  I  E  L  A  S  L  L  P  Q  K  E  D  N  L  R  N  R  I  T  R  :  F  L  L  A  V  S  D  L  L  G  E  P  Y  L  T  H  I  M  L  P  V  F  L  V  A  V  G  D  D  G  D  L  S  Y  F  P  A  T  C  Q  S  R  I  R   : G  L  K  P  K  T  A  V  A  E  R  L  A  T  I  G  V  L  P  L  L  L  A  G  V  L  G  S  P  R  K  H  E  L  L  T  E  Y  L  R  N  L  L  I  Q  T  S  G  Q  E  S  Q  T  V  K  R  E  I  F  F  S  V  R  F  L  C :   T  F  D  E  H  H  N  M  I  F  N  I  L  W  E  M  V  V  S  S  E  I  N  M  K  A  T  A  A  N  L  F  K  V  I  :  V  P  C  I  D  A  K  V  A  S  T  H  V  L  P  A  L  V  T  L  G  S  D  Q  N  L  N  V  K  Y  A  S  I  D  A  F  G  A  V  A  Q  Q  Y  K  N  D  A  :  I  V  D  K  I  R  V  Q  M  D  A  F  L  E  D  G  S  H  E  A  T  L  A  V  V  R  A  L  V  M  A  V  P  H  T  T  E  G  L  R  D   : Y  L  L  S  K  I  F  L  L  T  A  T  P  P  P  S  S  D  M  M  R  R  R  E  R  A  N  T  F  C  E  S  I  R  A  L  D  A  T  G  L  L  L  L  I  I  L  L  L  F  H  S  S  L  Y  F  L  K  I  *  M  F  F  K  M  I  S  L  Q  V  *  L  L  L  E  I  N  Q  S  T  I  Y  Y  V  L  Q  W  T  D  T  G  G  *  Y  P  D  F  W  L  *  N  Y  L  *  Q  S  W  L  I  K  V  I  S  *  V  F  S  H  L  R  R  V  N  Y  L  K  I  D  R  F  F  T  *  I  H  A  E  V  N  I  N  G  *  L  *  F  V  G  F  S  V  H  P  F  L  V  H  I  N  T  S   </second_frame>
            <third_frame>   S  V  V  N  H  F  Q  G  W  K  V  L  S  S  H  I  F  V  L  *  E  R  E  S  D  G  T  *  M  F  *  C  A  Y  C  R  S  C  F  H  L  Y  A  R  K  L  L  I  P  V  H  S  H  W  F  R  T  M  K  D  *  S  F  L  L  Q  F  L  N  S  M  L   : E  E  R  W  T  G  L  L  L  S  G  C  I  L  T  A  F  Q  R  *  L  N  *  P  L  Y  Y  L  R  R  K  I  T  *  G  I  E  S  R  G :   F  Y  W  Q  F  Q  T  C  S  G  N  L  T  *  H  T  S  C  Y  L  Y  S  W  W  Q  L  V  M  M  V  I  Y  H  I  S  L  Q  R  A  N  Q  E  *  E  :  V  *  N  R  K  L  Q  *  L  K  D  L  L  P  S  V  S  C  L  F  C  W  L  V  F  *  D  L  L  G  S  M  N  Y  *  Q  S  T  *  E  I  S  *  F  K  L  Q  D  K  R  V  R  Q  *  S  A  R  F  S  F  L  F  A  F  F   : A  L  S  M  N  I  T  I  *  F  L  T  S  S  G  K  W  L  *  V  L  K  *  T  *  R  Q  Q  L  P  I  F  L  K  S  L :   F  H  V  L  M  P  R  L  P  Q  H  M  F  C  L  L  L  *  R  L  V  L  T  K  T  *  M  *  N  M  P  V  L  M  L  L  E  L  W  R  S  S  I  K  M  M  R :   L  L  I  K  Y  V  F  K  W  M  L  F  L  R  M  D  H  M  K  L  R  *  L  *  F  V  H  W  *  W  Q  C  H  I  P  R  R  D  L  E  I  :  I  C  C  P  R  F  S  Y  L  Q  Q  H  L  L  L  Q  V  T  *  C  V  V  V  R  E  P  T  H  F  V  N  Q  F  V  L  L  M  L  L  V  C  S  F  *  L  F  F  F  S  F  I  H  L  F  T  F  *  R  Y  K  C  S  S  K  *  S  A  S  R  F  S  C  F  L  R  *  I  R  V  Q  Y  T  M  Y  C  S  G  L  I  Q  V  V  D  I  L  I  F  G  C  E  T  T  F  S  N  H  G  *  S  K  *  L  V  E  F  F  P  I  *  E  E  L  I  T  *  K  L  T  D  F  L  P  K  Y  M  P  K  L  T  *  M  V  D  C  D  L  L  G  L  V  C  I  L  F  L  F  I  L  I  Q  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011O23.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98221" stop="98438"/>
                    <exon start="98554" stop="98671"/>
                    <exon start="98758" stop="98890"/>
                    <exon start="98986" stop="99181"/>
                    <exon start="99260" stop="99365"/>
                    <exon start="99444" stop="99584"/>
                    <exon start="99679" stop="99802"/>
                    <exon start="99920" stop="100098"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1212</number_coding_nucleotides>
                  <number_encoded_amino_acids>404</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRCQPLSGVEGSIESHLRALGERERWNIDVLMRLLSELFPFVRKKAIDTCPFPLVSDDERLVFSTSVLEQYAGGKMDWPSFEWLHIDCFSALIELASLLPQKEDNLRNRITRFLLAVSDLLGEPYLTHIMLPVFLVAVGDDGDLSYFPATCQSRIRGLKPKTAVAERLATIGVLPLLLAGVLGSPRKHELLTEYLRNLLIQTSGQESQTVKREIFFSVRFLCTFDEHHNMIFNILWEMVVSSEINMKATAANLFKVIVPCIDAKVASTHVLPALVTLGSDQNLNVKYASIDAFGAVAQQYKNDAIVDKIRVQMDAFLEDGSHEATLAVVRALVMAVPHTTEGLRDYLLSKIFLLTATPPPSSDMMRRRERANTFCESIRALDATGLLLLIILLLFHSSLYFLKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="97592" e_stop="98137"/>
            <exon e_start="98224" e_stop="98529"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97592" e_stop="98137" e_length="546"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="98138" i_stop="98223" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="98224" e_stop="98529" e_length="306"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97592" stop="98137"/>
              <exon start="98224" stop="98529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98001" stop="98137"/>
              <exon start="98224" stop="98415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282574" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGCCGCTTGCTAGTTGCTCAATCTTGTGGGGAACTTGCTGAATTCGTGCGTCCTGAGATTCGAGATTCTCTTATCTTGTCTATTGTGCAACAGCTCATTGAGGATTCTGCTACAGTTGTTCGGGAGGCTTCTGCTCATAACTTGGCGTTGCTTCTGCCTCTCTTCCCAAGTAGGGACAAATATTTCAAGGTCAGCCTCACTACATAAGCTTCGAGGCAATCATGGAGAAGAAATGTGACTTGAGAGAATTTCCCACAAAGTAAGCTCCGTAGTCTAGGAATGGAGCATTTTCCCTCCCCTGGTCTTAATGTGGCTGCCCAAACTGATTAGATGATAGCATATACATAAATGGATATTCTCCAATTCCTTTATTTTGTTATTGTGTGTGTAAAGGTTGAGGAGATGATGTTTCAATTGGTGTGTGATCCATCTGGAGTGGTAGTGGAAACAACAATCAAGGAACTTGTTCCAGCTTTAGTAAACTGGGGGAAGGAATTGGATCATTTACTACAAGTCTTACTATCTCATGCTTTGGGCTCTGCTCAG : CGTTGTCAACCACTTTCAGGGGTGGAAGGTTCTATCGAGTCACATCTTCGTGCTTTAGGAGAGAGAGAGCGATGGAACATAGATGTTCTGATGCGCTTACTGTCGGAGTTGTTTCCATTTGTACGCAAGAAAGCTATTGATACCTGTCCATTCCCATTGGTTTCGGACGATGAAAGACTAGTCTTTTCTACTTCAGTTCTTGAACAGTATGCTGGGTAATATCCCCTTTTACCTTAACCTGCGTTTCTAATCTACCTTTCTATTCCTTCTTCAAAGGTGCTCTCACAATGTCTAGTTAATACTTGC</gDNA_template>
            <first_frame> R  R  L  L  V  A  Q  S  C  G  E  L  A  E  F  V  R  P  E  I  R  D  S  L  I  L  S  I  V  Q  Q  L  I  E  D  S  A  T  V  V  R  E  A  S  A  H  N  L  A  L  L  L  P  L  F  P  S  R  D  K  Y  F  K  V  S  L  T  T  *  A  S  R  Q  S  W  R  R  N  V  T  *  E  N  F  P  Q  S  K  L  R  S  L  G  M  E  H  F  P  S  P  G  L  N  V  A  A  Q  T  D  *  M  I  A  Y  T  *  M  D  I  L  Q  F  L  Y  F  V  I  V  C  V  K  V  E  E  M  M  F  Q  L  V  C  D  P  S  G  V  V  V  E  T  T  I  K  E  L  V  P  A  L  V  N  W  G  K  E  L  D  H  L  L  Q  V  L  L  S  H  A  L  G  S  A  Q  :  R  C  Q  P  L  S  G  V  E  G  S  I  E  S  H  L  R  A  L  G  E  R  E  R  W  N  I  D  V  L  M  R  L  L  S  E  L  F  P  F  V  R  K  K  A  I  D  T  C  P  F  P  L  V  S  D  D  E  R  L  V  F  S  T  S  V  L  E  Q  Y  A  G  *  Y  P  L  L  P  *  P  A  F  L  I  Y  L  S  I  P  S  S  K  V  L  S  Q  C  L  V  N  T  C </first_frame>
            <second_frame>  A  A  C  *  L  L  N  L  V  G  N  L  L  N  S  C  V  L  R  F  E  I  L  L  S  C  L  L  C  N  S  S  L  R  I  L  L  Q  L  F  G  R  L  L  L  I  T  W  R  C  F  C  L  S  S  Q  V  G  T  N  I  S  R  S  A  S  L  H  K  L  R  G  N  H  G  E  E  M  *  L  E  R  I  S  H  K  V  S  S  V  V  *  E  W  S  I  F  P  P  L  V  L  M  W  L  P  K  L  I  R  *  *  H  I  H  K  W  I  F  S  N  S  F  I  L  L  L  C  V  *  R  L  R  R  *  C  F  N  W  C  V  I  H  L  E  W  *  W  K  Q  Q  S  R  N  L  F  Q  L  *  *  T  G  G  R  N  W  I  I  Y  Y  K  S  Y  Y  L  M  L  W  A  L  L  S :   V  V  N  H  F  Q  G  W  K  V  L  S  S  H  I  F  V  L  *  E  R  E  S  D  G  T  *  M  F  *  C  A  Y  C  R  S  C  F  H  L  Y  A  R  K  L  L  I  P  V  H  S  H  W  F  R  T  M  K  D  *  S  F  L  L  Q  F  L  N  S  M  L  G  N  I  P  F  Y  L  N  L  R  F  *  S  T  F  L  F  L  L  Q  R  C  S  H  N  V  *  L  I  L   </second_frame>
            <third_frame>   P  L  A  S  C  S  I  L  W  G  T  C  *  I  R  A  S  *  D  S  R  F  S  Y  L  V  Y  C  A  T  A  H  *  G  F  C  Y  S  C  S  G  G  F  C  S  *  L  G  V  A  S  A  S  L  P  K  *  G  Q  I  F  Q  G  Q  P  H  Y  I  S  F  E  A  I  M  E  K  K  C  D  L  R  E  F  P  T  K  *  A  P  *  S  R  N  G  A  F  S  L  P  W  S  *  C  G  C  P  N  *  L  D  D  S  I  Y  I  N  G  Y  S  P  I  P  L  F  C  Y  C  V  C  K  G  *  G  D  D  V  S  I  G  V  *  S  I  W  S  G  S  G  N  N  N  Q  G  T  C  S  S  F  S  K  L  G  E  G  I  G  S  F  T  T  S  L  T  I  S  C  F  G  L  C  S   : A  L  S  T  T  F  R  G  G  R  F  Y  R  V  T  S  S  C  F  R  R  E  R  A  M  E  H  R  C  S  D  A  L  T  V  G  V  V  S  I  C  T  Q  E  S  Y  *  Y  L  S  I  P  I  G  F  G  R  *  K  T  S  L  F  Y  F  S  S  *  T  V  C  W  V  I  S  P  F  T  L  T  C  V  S  N  L  P  F  Y  S  F  F  K  G  A  L  T  M  S  S  *  Y  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011O23.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97940" stop="98137"/>
                    <exon start="98224" stop="98442"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>414</number_coding_nucleotides>
                  <number_encoded_amino_acids>138</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MDILQFLYFVIVCVKVEEMMFQLVCDPSGVVVETTIKELVPALVNWGKELDHLLQVLLSHALGSAQRCQPLSGVEGSIESHLRALGERERWNIDVLMRLLSELFPFVRKKAIDTCPFPLVSDDERLVFSTSVLEQYAG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011O23.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97605" stop="97829"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLNLVGNLLNSCVLRFEILLSCLLCNSSLRILLQLFGRLLLITWRCFCLSSQVGTNISRSASLHKLRGNHGEEM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="104314" PGL_stop="104823"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104314" e_stop="104823"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="104314" e_stop="104823" e_length="510"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104314" stop="104822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104315" stop="104773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104323" stop="104819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104324" stop="104819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104329" stop="104819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104330" stop="104823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104331" stop="104823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104336" stop="104819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104343" stop="104795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104344" stop="104773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104345" stop="104819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104355" stop="104754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104504" stop="104767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396922" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCACTACTTCATCCATCACTTCCATTACATTACTTAAAAAATTTCTCTTATAATTTAAATTGTATAATGAAAATGACTAAGGTTTGTTCTTTTGTGGCAGTAATGTTGGTGATGATCCTTGTTTGTGATCAATTTGGGGCTAACGAGGCGGCGACATGCAGCGCCTCGCAGCTGAGCCCGTGTTTGGGTGCGATCCAGGGTGGGACCGCACCATCACAGGATTGTTGTGCTAGGCTTAAGAACCAGCAGCCTTGCATTTGTGGATTTATGAAGGATCCTAATTTGAGGCAATATGTTAATTCTCCAAATGCTAGGAAAGTTGCTGGACAATGTGGTGTAAGCATTCCTAGTTGTTAATTAGGTTTACAACATTTTACTTGTTGTATACATATGGGTCTTATGTATTATGGAAAAAAATATATATATGTAAGACTTTAAATAAAAAATGGTTGTAATCTGTGTTCAAGTGTGTTATGATGAATGAATCTTGTGGCTTTTGATTTTATTT</gDNA_template>
            <first_frame> F  H  Y  F  I  H  H  F  H  Y  I  T  *  K  I  S  L  I  I  *  I  V  *  *  K  *  L  R  F  V  L  L  W  Q  *  C  W  *  *  S  L  F  V  I  N  L  G  L  T  R  R  R  H  A  A  P  R  S  *  A  R  V  W  V  R  S  R  V  G  P  H  H  H  R  I  V  V  L  G  L  R  T  S  S  L  A  F  V  D  L  *  R  I  L  I  *  G  N  M  L  I  L  Q  M  L  G  K  L  L  D  N  V  V  *  A  F  L  V  V  N  *  V  Y  N  I  L  L  V  V  Y  I  W  V  L  C  I  M  E  K  N  I  Y  M  *  D  F  K  *  K  M  V  V  I  C  V  Q  V  C  Y  D  E  *  I  L  W  L  L  I  L  F </first_frame>
            <second_frame>  F  T  T  S  S  I  T  S  I  T  L  L  K  K  F  L  L  *  F  K  L  Y  N  E  N  D  *  G  L  F  F  C  G  S  N  V  G  D  D  P  C  L  *  S  I  W  G  *  R  G  G  D  M  Q  R  L  A  A  E  P  V  F  G  C  D  P  G  W  D  R  T  I  T  G  L  L  C  *  A  *  E  P  A  A  L  H  L  W  I  Y  E  G  S  *  F  E  A  I  C  *  F  S  K  C  *  E  S  C  W  T  M  W  C  K  H  S  *  L  L  I  R  F  T  T  F  Y  L  L  Y  T  Y  G  S  Y  V  L  W  K  K  I  Y  I  C  K  T  L  N  K  K  W  L  *  S  V  F  K  C  V  M  M  N  E  S  C  G  F  *  F  Y   </second_frame>
            <third_frame>   S  L  L  H  P  S  L  P  L  H  Y  L  K  N  F  S  Y  N  L  N  C  I  M  K  M  T  K  V  C  S  F  V  A  V  M  L  V  M  I  L  V  C  D  Q  F  G  A  N  E  A  A  T  C  S  A  S  Q  L  S  P  C  L  G  A  I  Q  G  G  T  A  P  S  Q  D  C  C  A  R  L  K  N  Q  Q  P  C  I  C  G  F  M  K  D  P  N  L  R  Q  Y  V  N  S  P  N  A  R  K  V  A  G  Q  C  G  V  S  I  P  S  C  *  L  G  L  Q  H  F  T  C  C  I  H  M  G  L  M  Y  Y  G  K  K  Y  I  Y  V  R  L  *  I  K  N  G  C  N  L  C  S  S  V  L  *  *  M  N  L  V  A  F  D  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011O23.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104316" stop="104672"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLLHPSLPLHYLKNFSYNLNCIMKMTKVCSFVAVMLVMILVCDQFGANEAATCSASQLSPCLGAIQGGTAPSQDCCARLKNQQPCICGFMKDPNLRQYVNSPNARKVAGQCGVSIPSC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="110917" PGL_stop="112240"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110917" e_stop="111153"/>
            <exon e_start="111234" e_stop="111964"/>
            <exon e_start="112155" e_stop="112240"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="110917" e_stop="111153" e_length="237"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.982">
            <gDNA_intron_boundary i_start="111154" i_stop="111233" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111234" e_stop="111964" e_length="731"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="111965" i_stop="112154" i_length="190"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="112155" e_stop="112240" e_length="86"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110917" stop="111153"/>
              <exon start="111234" stop="111592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110917" stop="111153"/>
              <exon start="111234" stop="111484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110919" stop="111153"/>
              <exon start="111234" stop="111569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110923" stop="111153"/>
              <exon start="111234" stop="111726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110961" stop="111153"/>
              <exon start="111234" stop="111500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111058" stop="111153"/>
              <exon start="111234" stop="111669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207107" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111275" stop="111616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111465" stop="111964"/>
              <exon start="112155" stop="112240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205913" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAACTTTGTGTGTCTCATTCTTCGCCTCTTAAATAGCACTCTCTATCTAAATTTTAATTCTCATCTCTTTTAGTATTTGCATTTTAGCTACTACTCATAAGTAGTTGCCAAAAGAAAAAATTAAAGCAAAATTTATCGTGCTGCCATGGCTGTCGAGGAACTCTCGGTTGTTCTCCCCCGCGTGCTCATTGTCTCTAGACGTACCGTTCGTAAGAACAAATTTGTTGATTTTGTTG : GAGAATATCATCTCGATCTTATAGTAAGCTATGGAGCTGTTCCGGTGATTGTACCCAGAGTTTCCGGGGTACATTTGTTATTAGACAGTTTTGAACCAATTCATGGTGTTCTTCTCTGTGAAGGAGAGGATATCGATCCTTCTCTGTACAACGATGAACTATCCGATCTCTCCGTAGAAGAATTGGAAGAAATTAGGAGATTGCACGCTAGCGACACTGCAATTGACAAGGAAAAAGACACAATTGAACTCAGATTGGCTAAGCTCTGTCTAGAAAGGAACATTCCCTATTTGGGAATATGCAGGGGTTCACAGGTACTGAATGTTGCATGTGGGGGAACTCTTATACAAGACATTGGAAAAGAAATATCGAAAAACCTTCCTGAGAATCAGAGGGTAGTTCATATGGATTACGATAACTATGATGGTCATAGACATGTTATACAAGTTGTCGAGGAAACGCCATTGCACCATTGGTTCAAGGACTCGTTGGAAGACGAAAAAATGGAGATTTCAGTCAATAGTTATCATCATCAAGGAGTTAAAAAATTGGCTCAGAGATTTGTTCCTATGGCATTTGCCCCTGATGGTTTAATTGAAGGATTCTATGATCCAGATGCTTATAATCCTGTTGAGGGTAAGTTTATTATGGGACTTCAATTTCATCCGGAACGAATGAGACAAGAAGATAGTGATGAATTTGATTATCCTGGATGTACATTTGCTTATCAG : GAGTTTGTGAAGGCTGTAGTTGCATATCAGAAAAAACTGTTAAGCACAACCACAATCGAAAAGCCATTGAAGCTTAATCAAGAAAT</gDNA_template>
            <first_frame> S  T  L  C  V  S  F  F  A  S  *  I  A  L  S  I  *  I  L  I  L  I  S  F  S  I  C  I  L  A  T  T  H  K  *  L  P  K  E  K  I  K  A  K  F  I  V  L  P  W  L  S  R  N  S  R  L  F  S  P  A  C  S  L  S  L  D  V  P  F  V  R  T  N  L  L  I  L  L  :  E  N  I  I  S  I  L  *  *  A  M  E  L  F  R  *  L  Y  P  E  F  P  G  Y  I  C  Y  *  T  V  L  N  Q  F  M  V  F  F  S  V  K  E  R  I  S  I  L  L  C  T  T  M  N  Y  P  I  S  P  *  K  N  W  K  K  L  G  D  C  T  L  A  T  L  Q  L  T  R  K  K  T  Q  L  N  S  D  W  L  S  S  V  *  K  G  T  F  P  I  W  E  Y  A  G  V  H  R  Y  *  M  L  H  V  G  E  L  L  Y  K  T  L  E  K  K  Y  R  K  T  F  L  R  I  R  G  *  F  I  W  I  T  I  T  M  M  V  I  D  M  L  Y  K  L  S  R  K  R  H  C  T  I  G  S  R  T  R  W  K  T  K  K  W  R  F  Q  S  I  V  I  I  I  K  E  L  K  N  W  L  R  D  L  F  L  W  H  L  P  L  M  V  *  L  K  D  S  M  I  Q  M  L  I  I  L  L  R  V  S  L  L  W  D  F  N  F  I  R  N  E  *  D  K  K  I  V  M  N  L  I  I  L  D  V  H  L  L  I  R :   S  L  *  R  L  *  L  H  I  R  K  N  C  *  A  Q  P  Q  S  K  S  H  *  S  L  I  K  K  </first_frame>
            <second_frame>  Q  L  C  V  S  H  S  S  P  L  K  *  H  S  L  S  K  F  *  F  S  S  L  L  V  F  A  F  *  L  L  L  I  S  S  C  Q  K  K  K  L  K  Q  N  L  S  C  C  H  G  C  R  G  T  L  G  C  S  P  P  R  A  H  C  L  *  T  Y  R  S  *  E  Q  I  C  *  F  C  W :   R  I  S  S  R  S  Y  S  K  L  W  S  C  S  G  D  C  T  Q  S  F  R  G  T  F  V  I  R  Q  F  *  T  N  S  W  C  S  S  L  *  R  R  G  Y  R  S  F  S  V  Q  R  *  T  I  R  S  L  R  R  R  I  G  R  N  *  E  I  A  R  *  R  H  C  N  *  Q  G  K  R  H  N  *  T  Q  I  G  *  A  L  S  R  K  E  H  S  L  F  G  N  M  Q  G  F  T  G  T  E  C  C  M  W  G  N  S  Y  T  R  H  W  K  R  N  I  E  K  P  S  *  E  S  E  G  S  S  Y  G  L  R  *  L  *  W  S  *  T  C  Y  T  S  C  R  G  N  A  I  A  P  L  V  Q  G  L  V  G  R  R  K  N  G  D  F  S  Q  *  L  S  S  S  R  S  *  K  I  G  S  E  I  C  S  Y  G  I  C  P  *  W  F  N  *  R  I  L  *  S  R  C  L  *  S  C  *  G  *  V  Y  Y  G  T  S  I  S  S  G  T  N  E  T  R  R  *  *  *  I  *  L  S  W  M  Y  I  C  L  S   : G  V  C  E  G  C  S  C  I  S  E  K  T  V  K  H  N  H  N  R  K  A  I  E  A  *  S  R  N </second_frame>
            <third_frame>   N  F  V  C  L  I  L  R  L  L  N  S  T  L  Y  L  N  F  N  S  H  L  F  *  Y  L  H  F  S  Y  Y  S  *  V  V  A  K  R  K  N  *  S  K  I  Y  R  A  A  M  A  V  E  E  L  S  V  V  L  P  R  V  L  I  V  S  R  R  T  V  R  K  N  K  F  V  D  F  V   : G  E  Y  H  L  D  L  I  V  S  Y  G  A  V  P  V  I  V  P  R  V  S  G  V  H  L  L  L  D  S  F  E  P  I  H  G  V  L  L  C  E  G  E  D  I  D  P  S  L  Y  N  D  E  L  S  D  L  S  V  E  E  L  E  E  I  R  R  L  H  A  S  D  T  A  I  D  K  E  K  D  T  I  E  L  R  L  A  K  L  C  L  E  R  N  I  P  Y  L  G  I  C  R  G  S  Q  V  L  N  V  A  C  G  G  T  L  I  Q  D  I  G  K  E  I  S  K  N  L  P  E  N  Q  R  V  V  H  M  D  Y  D  N  Y  D  G  H  R  H  V  I  Q  V  V  E  E  T  P  L  H  H  W  F  K  D  S  L  E  D  E  K  M  E  I  S  V  N  S  Y  H  H  Q  G  V  K  K  L  A  Q  R  F  V  P  M  A  F  A  P  D  G  L  I  E  G  F  Y  D  P  D  A  Y  N  P  V  E  G  K  F  I  M  G  L  Q  F  H  P  E  R  M  R  Q  E  D  S  D  E  F  D  Y  P  G  C  T  F  A  Y  Q  :  E  F  V  K  A  V  V  A  Y  Q  K  K  L  L  S  T  T  T  I  E  K  P  L  K  L  N  Q  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011O23.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111042" stop="111153"/>
                    <exon start="111234" stop="111964"/>
                    <exon start="112155" stop="112238"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>927</number_coding_nucleotides>
                  <number_encoded_amino_acids>309</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKIYRAAMAVEELSVVLPRVLIVSRRTVRKNKFVDFVGEYHLDLIVSYGAVPVIVPRVSGVHLLLDSFEPIHGVLLCEGEDIDPSLYNDELSDLSVEELEEIRRLHASDTAIDKEKDTIELRLAKLCLERNIPYLGICRGSQVLNVACGGTLIQDIGKEISKNLPENQRVVHMDYDNYDGHRHVIQVVEETPLHHWFKDSLEDEKMEISVNSYHHQGVKKLAQRFVPMAFAPDGLIEGFYDPDAYNPVEGKFIMGLQFHPERMRQEDSDEFDYPGCTFAYQEFVKAVVAYQKKLLSTTTIEKPLKLNQE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="118598" PGL_stop="119380"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118598" e_stop="119380"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="118598" e_stop="119380" e_length="783"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118598" stop="119380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118598" stop="119273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118599" stop="119136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359198" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCATCTTCTTCATGCTTTATTTCCACCTACTTTTCTGCTCACCTTACACTTGTTTAACAATCCATTGCCTCTTCGTTTAGCCACATTCATTTCCCAATTTTTTCCAAATGAATTCTCAAAGCTTTTACTTCTTCTCTCTGTTCACTCTGTTTTCATCACTTGTACTAATTCATGTACCTCGAGGTTCGAGTGACCCTGATGAATTTTACCAGACTTGTGGGAAAACATATACATGTGGCAATATTAAGGGATTAAGTTATCCTTTTATGAGTGTCAATGATCCTTTCTTCTGCGGCTATCCTGGTTTTGAGCTCAATTGCAATAAGGATGGTAGTACTACAATGGAAATCGAAAACATCAAGTATCGAGTTTTAAACGTACTTCCAACAACCCAAACGATAAGAATTCTGAGGGAGGATATCATGAAATCCACTTGTCCTGTTGATTTGGTTAACACCACTCTGGATTACTCCCTCTTCGATTATGCCTCTGGCTATACAAACTTGACCTTTCTATACGATTGCCCTGTTGCATCCCACTTTGCAGAAATGGATGGTACTTTCACTTGTAGAAATAGCAAATATCACAATGTTTTCGTACTACCTGGTGCTGTAGGCCCGGGGAAGTGCGATGCTAGTGTCACAGTTCCAGTGCCTCAAATGAGTGCTGGTAATGTAGGGTCATTGGATACATCAGGTCTGGCACAAGTACTACAAGAGGGGTTTGATATAAGATGGAAACTTGAAAGTAAAACCTGCAGTAAATGTATCCAAGACAAGGGA</gDNA_template>
            <first_frame> I  I  F  F  M  L  Y  F  H  L  L  F  C  S  P  Y  T  C  L  T  I  H  C  L  F  V  *  P  H  S  F  P  N  F  F  Q  M  N  S  Q  S  F  Y  F  F  S  L  F  T  L  F  S  S  L  V  L  I  H  V  P  R  G  S  S  D  P  D  E  F  Y  Q  T  C  G  K  T  Y  T  C  G  N  I  K  G  L  S  Y  P  F  M  S  V  N  D  P  F  F  C  G  Y  P  G  F  E  L  N  C  N  K  D  G  S  T  T  M  E  I  E  N  I  K  Y  R  V  L  N  V  L  P  T  T  Q  T  I  R  I  L  R  E  D  I  M  K  S  T  C  P  V  D  L  V  N  T  T  L  D  Y  S  L  F  D  Y  A  S  G  Y  T  N  L  T  F  L  Y  D  C  P  V  A  S  H  F  A  E  M  D  G  T  F  T  C  R  N  S  K  Y  H  N  V  F  V  L  P  G  A  V  G  P  G  K  C  D  A  S  V  T  V  P  V  P  Q  M  S  A  G  N  V  G  S  L  D  T  S  G  L  A  Q  V  L  Q  E  G  F  D  I  R  W  K  L  E  S  K  T  C  S  K  C  I  Q  D  K  G </first_frame>
            <second_frame>  S  S  S  S  C  F  I  S  T  Y  F  S  A  H  L  T  L  V  *  Q  S  I  A  S  S  F  S  H  I  H  F  P  I  F  S  K  *  I  L  K  A  F  T  S  S  L  C  S  L  C  F  H  H  L  Y  *  F  M  Y  L  E  V  R  V  T  L  M  N  F  T  R  L  V  G  K  H  I  H  V  A  I  L  R  D  *  V  I  L  L  *  V  S  M  I  L  S  S  A  A  I  L  V  L  S  S  I  A  I  R  M  V  V  L  Q  W  K  S  K  T  S  S  I  E  F  *  T  Y  F  Q  Q  P  K  R  *  E  F  *  G  R  I  S  *  N  P  L  V  L  L  I  W  L  T  P  L  W  I  T  P  S  S  I  M  P  L  A  I  Q  T  *  P  F  Y  T  I  A  L  L  H  P  T  L  Q  K  W  M  V  L  S  L  V  E  I  A  N  I  T  M  F  S  Y  Y  L  V  L  *  A  R  G  S  A  M  L  V  S  Q  F  Q  C  L  K  *  V  L  V  M  *  G  H  W  I  H  Q  V  W  H  K  Y  Y  K  R  G  L  I  *  D  G  N  L  K  V  K  P  A  V  N  V  S  K  T  R   </second_frame>
            <third_frame>   H  L  L  H  A  L  F  P  P  T  F  L  L  T  L  H  L  F  N  N  P  L  P  L  R  L  A  T  F  I  S  Q  F  F  P  N  E  F  S  K  L  L  L  L  L  S  V  H  S  V  F  I  T  C  T  N  S  C  T  S  R  F  E  *  P  *  *  I  L  P  D  L  W  E  N  I  Y  M  W  Q  Y  *  G  I  K  L  S  F  Y  E  C  Q  *  S  F  L  L  R  L  S  W  F  *  A  Q  L  Q  *  G  W  *  Y  Y  N  G  N  R  K  H  Q  V  S  S  F  K  R  T  S  N  N  P  N  D  K  N  S  E  G  G  Y  H  E  I  H  L  S  C  *  F  G  *  H  H  S  G  L  L  P  L  R  L  C  L  W  L  Y  K  L  D  L  S  I  R  L  P  C  C  I  P  L  C  R  N  G  W  Y  F  H  L  *  K  *  Q  I  S  Q  C  F  R  T  T  W  C  C  R  P  G  E  V  R  C  *  C  H  S  S  S  A  S  N  E  C  W  *  C  R  V  I  G  Y  I  R  S  G  T  S  T  T  R  G  V  *  Y  K  M  E  T  *  K  *  N  L  Q  *  M  Y  P  R  Q  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011O23.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118679" stop="119380"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PHSFPNFFQMNSQSFYFFSLFTLFSSLVLIHVPRGSSDPDEFYQTCGKTYTCGNIKGLSYPFMSVNDPFFCGYPGFELNCNKDGSTTMEIENIKYRVLNVLPTTQTIRILREDIMKSTCPVDLVNTTLDYSLFDYASGYTNLTFLYDCPVASHFAEMDGTFTCRNSKYHNVFVLPGAVGPGKCDASVTVPVPQMSAGNVGSLDTSGLAQVLQEGFDIRWKLESKTCSKCIQDKG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="121732" PGL_stop="123049"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121732" e_stop="123049"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="121732" e_stop="123049" e_length="1318"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121732" stop="122374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121733" stop="122452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121733" stop="122208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122288" stop="122994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379677" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122544" stop="123049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398495" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTTTCTCTGTCCCTTAAATCCTCATCTCCTTTCAGCTTAGCTCCTGAATAAAGGTCTTTTACCACGATTACCAGTTAGCGCCTCTCTTTCTTAGGTGGTGCTAATTCCCTTAATCAAACAGAAATGCATCCTTATTTTTTGCTCTTCACTTCCACAATATTTATCTTGATCTATATACCGGGGTCTTTCTGTCAAGATGACGAACAATACAGGAGTTGTGGTGAGCCGTTTCGCTGCGGCAGCATGGATATAGTTTACCCTTTTTGGGGAGGGAGAAAACCAGAGTATTGTGGTCATCCAAGTTTTGAGATCAAGTGCGAAAATAACATCCCCAAAATTACTATTGAATCAACAGGATACGAAGTGATAGGTATCAACACCCCTAATAGAATTGTAACCCTGGCTCGCGATGATTTACTGAGTAATATTTGTTTGGATAATCCTGAGAATGCCTCCTTTGATTTAAACACTTTCAGCTATCTTTCGAGTGACCTGAATATTACTCTTTATTTCGGCTGCACCCTCCGCCCTGGTTCGCAATTACCAGCTTCGTCTCCAAATAGATTCAATTGCAATAGCAATATATTTGGTATATATACGCTGATCAACGTTCCCTTCGACCTTAGTCTGGTAACATGCCAGGAAGAAATAATAGTTAGGGTCAATCAAACGAATGCTGTGGCATTAGCCAGTCCTACAGCTTCCGTGGAAGTTCTGAAAAGAGCCATTGCTGGCGGGTTTTCAGTAAACTGGACGGCAACTATTGATTCAAAGTGCAACCAATGCGATAGGTCAGGTGGAAGATGTGGATCCAATCCAGATTCTGGAGACTTTGCTTGCCATTGTGAAAATGGTACTCATCCAAACGACTGCAACGACGGACCAAACCAAGCCGGCGGTAATCTTTTCTCTATTATTACTCATAATTTACTTCGTTCCTCCGTTTCCAGATAATTACATGTCCCATCCATACATACCAGTCCTTTCTCAAGAGATTTGAATTACAAACGCTAACTTAGTAAAGACTCTTTCACAATCAGTAAAGTATCAATTTAATATGAATTTTCTTGCTTGTATGAAAAAATCAGAATAACTTTGAAGGGAAAAAAACCCCAATTAATACCTTCTCCATCATCTTGAAAAAATATTTATTTTTGGACTAACTAGAAAACACAGTATAGTATGGACCAACGGAAGTACTTGTTTTGCATTGCTTATCTAGTATTAAACTCTCCATAAAATTTTGTACGTGTTATAATTTTGTCCAAATTCCATAGGAAACTCAATATACTACAGCCTCTAGCCCTCTATCTACCA</gDNA_template>
            <first_frame> P  F  S  V  P  *  I  L  I  S  F  Q  L  S  S  *  I  K  V  F  Y  H  D  Y  Q  L  A  P  L  F  L  R  W  C  *  F  P  *  S  N  R  N  A  S  L  F  F  A  L  H  F  H  N  I  Y  L  D  L  Y  T  G  V  F  L  S  R  *  R  T  I  Q  E  L  W  *  A  V  S  L  R  Q  H  G  Y  S  L  P  F  L  G  R  E  K  T  R  V  L  W  S  S  K  F  *  D  Q  V  R  K  *  H  P  Q  N  Y  Y  *  I  N  R  I  R  S  D  R  Y  Q  H  P  *  *  N  C  N  P  G  S  R  *  F  T  E  *  Y  L  F  G  *  S  *  E  C  L  L  *  F  K  H  F  Q  L  S  F  E  *  P  E  Y  Y  S  L  F  R  L  H  P  P  P  W  F  A  I  T  S  F  V  S  K  *  I  Q  L  Q  *  Q  Y  I  W  Y  I  Y  A  D  Q  R  S  L  R  P  *  S  G  N  M  P  G  R  N  N  S  *  G  Q  S  N  E  C  C  G  I  S  Q  S  Y  S  F  R  G  S  S  E  K  S  H  C  W  R  V  F  S  K  L  D  G  N  Y  *  F  K  V  Q  P  M  R  *  V  R  W  K  M  W  I  Q  S  R  F  W  R  L  C  L  P  L  *  K  W  Y  S  S  K  R  L  Q  R  R  T  K  P  S  R  R  *  S  F  L  Y  Y  Y  S  *  F  T  S  F  L  R  F  Q  I  I  T  C  P  I  H  T  Y  Q  S  F  L  K  R  F  E  L  Q  T  L  T  *  *  R  L  F  H  N  Q  *  S  I  N  L  I  *  I  F  L  L  V  *  K  N  Q  N  N  F  E  G  K  K  T  P  I  N  T  F  S  I  I  L  K  K  Y  L  F  L  D  *  L  E  N  T  V  *  Y  G  P  T  E  V  L  V  L  H  C  L  S  S  I  K  L  S  I  K  F  C  T  C  Y  N  F  V  Q  I  P  *  E  T  Q  Y  T  T  A  S  S  P  L  S  T  </first_frame>
            <second_frame>  L  S  L  S  L  K  S  S  S  P  F  S  L  A  P  E  *  R  S  F  T  T  I  T  S  *  R  L  S  F  L  G  G  A  N  S  L  N  Q  T  E  M  H  P  Y  F  L  L  F  T  S  T  I  F  I  L  I  Y  I  P  G  S  F  C  Q  D  D  E  Q  Y  R  S  C  G  E  P  F  R  C  G  S  M  D  I  V  Y  P  F  W  G  G  R  K  P  E  Y  C  G  H  P  S  F  E  I  K  C  E  N  N  I  P  K  I  T  I  E  S  T  G  Y  E  V  I  G  I  N  T  P  N  R  I  V  T  L  A  R  D  D  L  L  S  N  I  C  L  D  N  P  E  N  A  S  F  D  L  N  T  F  S  Y  L  S  S  D  L  N  I  T  L  Y  F  G  C  T  L  R  P  G  S  Q  L  P  A  S  S  P  N  R  F  N  C  N  S  N  I  F  G  I  Y  T  L  I  N  V  P  F  D  L  S  L  V  T  C  Q  E  E  I  I  V  R  V  N  Q  T  N  A  V  A  L  A  S  P  T  A  S  V  E  V  L  K  R  A  I  A  G  G  F  S  V  N  W  T  A  T  I  D  S  K  C  N  Q  C  D  R  S  G  G  R  C  G  S  N  P  D  S  G  D  F  A  C  H  C  E  N  G  T  H  P  N  D  C  N  D  G  P  N  Q  A  G  G  N  L  F  S  I  I  T  H  N  L  L  R  S  S  V  S  R  *  L  H  V  P  S  I  H  T  S  P  F  S  R  D  L  N  Y  K  R  *  L  S  K  D  S  F  T  I  S  K  V  S  I  *  Y  E  F  S  C  L  Y  E  K  I  R  I  T  L  K  G  K  K  P  Q  L  I  P  S  P  S  S  *  K  N  I  Y  F  W  T  N  *  K  T  Q  Y  S  M  D  Q  R  K  Y  L  F  C  I  A  Y  L  V  L  N  S  P  *  N  F  V  R  V  I  I  L  S  K  F  H  R  K  L  N  I  L  Q  P  L  A  L  Y  L  P </second_frame>
            <third_frame>   F  L  C  P  L  N  P  H  L  L  S  A  *  L  L  N  K  G  L  L  P  R  L  P  V  S  A  S  L  S  *  V  V  L  I  P  L  I  K  Q  K  C  I  L  I  F  C  S  S  L  P  Q  Y  L  S  *  S  I  Y  R  G  L  S  V  K  M  T  N  N  T  G  V  V  V  S  R  F  A  A  A  A  W  I  *  F  T  L  F  G  E  G  E  N  Q  S  I  V  V  I  Q  V  L  R  S  S  A  K  I  T  S  P  K  L  L  L  N  Q  Q  D  T  K  *  *  V  S  T  P  L  I  E  L  *  P  W  L  A  M  I  Y  *  V  I  F  V  W  I  I  L  R  M  P  P  L  I  *  T  L  S  A  I  F  R  V  T  *  I  L  L  F  I  S  A  A  P  S  A  L  V  R  N  Y  Q  L  R  L  Q  I  D  S  I  A  I  A  I  Y  L  V  Y  I  R  *  S  T  F  P  S  T  L  V  W  *  H  A  R  K  K  *  *  L  G  S  I  K  R  M  L  W  H  *  P  V  L  Q  L  P  W  K  F  *  K  E  P  L  L  A  G  F  Q  *  T  G  R  Q  L  L  I  Q  S  A  T  N  A  I  G  Q  V  E  D  V  D  P  I  Q  I  L  E  T  L  L  A  I  V  K  M  V  L  I  Q  T  T  A  T  T  D  Q  T  K  P  A  V  I  F  S  L  L  L  L  I  I  Y  F  V  P  P  F  P  D  N  Y  M  S  H  P  Y  I  P  V  L  S  Q  E  I  *  I  T  N  A  N  L  V  K  T  L  S  Q  S  V  K  Y  Q  F  N  M  N  F  L  A  C  M  K  K  S  E  *  L  *  R  E  K  N  P  N  *  Y  L  L  H  H  L  E  K  I  F  I  F  G  L  T  R  K  H  S  I  V  W  T  N  G  S  T  C  F  A  L  L  I  *  Y  *  T  L  H  K  I  L  Y  V  L  *  F  C  P  N  S  I  G  N  S  I  Y  Y  S  L  *  P  S  I  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011O23.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121811" stop="122686"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>873</number_coding_nucleotides>
                  <number_encoded_amino_acids>291</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLSFLGGANSLNQTEMHPYFLLFTSTIFILIYIPGSFCQDDEQYRSCGEPFRCGSMDIVYPFWGGRKPEYCGHPSFEIKCENNIPKITIESTGYEVIGINTPNRIVTLARDDLLSNICLDNPENASFDLNTFSYLSSDLNITLYFGCTLRPGSQLPASSPNRFNCNSNIFGIYTLINVPFDLSLVTCQEEIIVRVNQTNAVALASPTASVEVLKRAIAGGFSVNWTATIDSKCNQCDRSGGRCGSNPDSGDFACHCENGTHPNDCNDGPNQAGGNLFSIITHNLLRSSVSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="126683" PGL_stop="128144"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="126683" e_stop="126886"/>
            <exon e_start="126964" e_stop="128144"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.917" e_score="0.975"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="126683" e_stop="126886" e_length="204"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.917">
            <gDNA_intron_boundary i_start="126887" i_stop="126963" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="0.966">
            <gDNA_exon_boundary e_start="126964" e_stop="128144" e_length="1181"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126683" stop="126886"/>
              <exon start="126964" stop="127450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126683" stop="126886"/>
              <exon start="126964" stop="127440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127012" stop="127524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127412" stop="128144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127440" stop="128076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127450" stop="128144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545943" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAGTTCCTCTTCTACTCCTTCTTCTACCACTTTCACCAGAAGCATTCCCTCTTATCCATCTTCCAAATCTGAAGCTGATTACGGGAGGGGAAGCTCCTACTTTGGGGCTCATGTCTTCAGTTTTGCTGAACTTGAAGAAGCGACGAATAATTTTGATCCATCTAAAGAGCTTGGGGATGGTGGTTTTGGTGTCGTGTACTACG : GCAAGCTCCATGATGGTCGCGTGGTTGCAGTCAAGCGCTTGTATGAGAACAATTTCAAGCGTGTGGAGCAGTTCATGAATGAAGTAGAGATTTTAACTCAGCTACGCCACAAGAACCTAGTGACGTTGTATGGGTGTACATCTAAACGAAGCCGAGATTTACTCCTAGTTTATGAGTATATACCAAATGGGACAGTGGCAGATCATCTACATGGTAAACGGGCCAAATCTGGCTTACTCTCTTGGCCTGTCCGAATGAACATAGCCATTGAGACTGCTGAAGCCCTGGCTTATCTCCACTCCTCAATTATAATACACCGTGACGTCAAAACCAACAACATTCTGTTAGACAACGATTTCCATGTGAAAGTTGCTGATTTTGGGCTATCAAGACTGTTCCCAAATAATGTCACACATGTCTCTACTGCTCCACAGGGTACACCAGGCTACGTTGATCCTGAATACTACCAATGTTACCAGCTCACTGAAAAGAGTGATGTCTATAGTTTTGGGGTGGTGTTGGTAGAGCTGATCTCATCATTAGAAGCTGTGGATACCAACAGGCACCGCCATGATATTAATTTGTCTAATATGGCTGTCAACAAGATCCAAGGTCATTCAATTCATGAATTAGTTGATCCAACTCTTGGATTCTCAACAAACAGCTCCGTGAGGAGGATGACTACATTAGTCGCAGAGTTAGCTTTCCGATGTCTGCAACAAGAGAGAGATCTGAGACCTTCAATGCAAGAAGTGCTGGAGACATTGAGAGGCATCCAGAATGGAGAGTCGAAAGCACACAATGCTGAGGTACTGGATATTGTGGTAGATGATGCTGGGCTCCTAAAGGACTCCCTTTCTTCTCCGGATTCAGTTGCCGCTGACAAATGAGTTGACAGCTCCACACCACATTCTAGTGGATGAAATATGTTTTTCAGGTCGGTTGAATTCGATGCAAGGTGAGGAAGCAACTACTATTATGGCACTTGTGATCAGTATCTCGCGTCTTCCATAGATAATTTATTTCTTATTTTTGCTTACATATAGTTATGTTGCTATCGTCAATATTTTCTGTGGGAGATTATCTAAAACTGCTTTTCGCATAAGGCAATGTATAAAAATAGTGAATAGGGCTGCCAACATTCTAGTATACATATGCATCTCTGCTCTTTTGTATACCAG</gDNA_template>
            <first_frame> *  V  P  L  L  L  L  L  L  P  L  S  P  E  A  F  P  L  I  H  L  P  N  L  K  L  I  T  G  G  E  A  P  T  L  G  L  M  S  S  V  L  L  N  L  K  K  R  R  I  I  L  I  H  L  K  S  L  G  M  V  V  L  V  S  C  T  T  :  A  S  S  M  M  V  A  W  L  Q  S  S  A  C  M  R  T  I  S  S  V  W  S  S  S  *  M  K  *  R  F  *  L  S  Y  A  T  R  T  *  *  R  C  M  G  V  H  L  N  E  A  E  I  Y  S  *  F  M  S  I  Y  Q  M  G  Q  W  Q  I  I  Y  M  V  N  G  P  N  L  A  Y  S  L  G  L  S  E  *  T  *  P  L  R  L  L  K  P  W  L  I  S  T  P  Q  L  *  Y  T  V  T  S  K  P  T  T  F  C  *  T  T  I  S  M  *  K  L  L  I  L  G  Y  Q  D  C  S  Q  I  M  S  H  M  S  L  L  L  H  R  V  H  Q  A  T  L  I  L  N  T  T  N  V  T  S  S  L  K  R  V  M  S  I  V  L  G  W  C  W  *  S  *  S  H  H  *  K  L  W  I  P  T  G  T  A  M  I  L  I  C  L  I  W  L  S  T  R  S  K  V  I  Q  F  M  N  *  L  I  Q  L  L  D  S  Q  Q  T  A  P  *  G  G  *  L  H  *  S  Q  S  *  L  S  D  V  C  N  K  R  E  I  *  D  L  Q  C  K  K  C  W  R  H  *  E  A  S  R  M  E  S  R  K  H  T  M  L  R  Y  W  I  L  W  *  M  M  L  G  S  *  R  T  P  F  L  L  R  I  Q  L  P  L  T  N  E  L  T  A  P  H  H  I  L  V  D  E  I  C  F  S  G  R  L  N  S  M  Q  G  E  E  A  T  T  I  M  A  L  V  I  S  I  S  R  L  P  *  I  I  Y  F  L  F  L  L  T  Y  S  Y  V  A  I  V  N  I  F  C  G  R  L  S  K  T  A  F  R  I  R  Q  C  I  K  I  V  N  R  A  A  N  I  L  V  Y  I  C  I  S  A  L  L  Y  T   </first_frame>
            <second_frame>  E  F  L  F  Y  S  F  F  Y  H  F  H  Q  K  H  S  L  L  S  I  F  Q  I  *  S  *  L  R  E  G  K  L  L  L  W  G  S  C  L  Q  F  C  *  T  *  R  S  D  E  *  F  *  S  I  *  R  A  W  G  W  W  F  W  C  R  V  L  R :   Q  A  P  *  W  S  R  G  C  S  Q  A  L  V  *  E  Q  F  Q  A  C  G  A  V  H  E  *  S  R  D  F  N  S  A  T  P  Q  E  P  S  D  V  V  W  V  Y  I  *  T  K  P  R  F  T  P  S  L  *  V  Y  T  K  W  D  S  G  R  S  S  T  W  *  T  G  Q  I  W  L  T  L  L  A  C  P  N  E  H  S  H  *  D  C  *  S  P  G  L  S  P  L  L  N  Y  N  T  P  *  R  Q  N  Q  Q  H  S  V  R  Q  R  F  P  C  E  S  C  *  F  W  A  I  K  T  V  P  K  *  C  H  T  C  L  Y  C  S  T  G  Y  T  R  L  R  *  S  *  I  L  P  M  L  P  A  H  *  K  E  *  C  L  *  F  W  G  G  V  G  R  A  D  L  I  I  R  S  C  G  Y  Q  Q  A  P  P  *  Y  *  F  V  *  Y  G  C  Q  Q  D  P  R  S  F  N  S  *  I  S  *  S  N  S  W  I  L  N  K  Q  L  R  E  E  D  D  Y  I  S  R  R  V  S  F  P  M  S  A  T  R  E  R  S  E  T  F  N  A  R  S  A  G  D  I  E  R  H  P  E  W  R  V  E  S  T  Q  C  *  G  T  G  Y  C  G  R  *  C  W  A  P  K  G  L  P  F  F  S  G  F  S  C  R  *  Q  M  S  *  Q  L  H  T  T  F  *  W  M  K  Y  V  F  Q  V  G  *  I  R  C  K  V  R  K  Q  L  L  L  W  H  L  *  S  V  S  R  V  F  H  R  *  F  I  S  Y  F  C  L  H  I  V  M  L  L  S  S  I  F  S  V  G  D  Y  L  K  L  L  F  A  *  G  N  V  *  K  *  *  I  G  L  P  T  F  *  Y  T  Y  A  S  L  L  F  C  I  P  </second_frame>
            <third_frame>   S  S  S  S  T  P  S  S  T  T  F  T  R  S  I  P  S  Y  P  S  S  K  S  E  A  D  Y  G  R  G  S  S  Y  F  G  A  H  V  F  S  F  A  E  L  E  E  A  T  N  N  F  D  P  S  K  E  L  G  D  G  G  F  G  V  V  Y  Y   : G  K  L  H  D  G  R  V  V  A  V  K  R  L  Y  E  N  N  F  K  R  V  E  Q  F  M  N  E  V  E  I  L  T  Q  L  R  H  K  N  L  V  T  L  Y  G  C  T  S  K  R  S  R  D  L  L  L  V  Y  E  Y  I  P  N  G  T  V  A  D  H  L  H  G  K  R  A  K  S  G  L  L  S  W  P  V  R  M  N  I  A  I  E  T  A  E  A  L  A  Y  L  H  S  S  I  I  I  H  R  D  V  K  T  N  N  I  L  L  D  N  D  F  H  V  K  V  A  D  F  G  L  S  R  L  F  P  N  N  V  T  H  V  S  T  A  P  Q  G  T  P  G  Y  V  D  P  E  Y  Y  Q  C  Y  Q  L  T  E  K  S  D  V  Y  S  F  G  V  V  L  V  E  L  I  S  S  L  E  A  V  D  T  N  R  H  R  H  D  I  N  L  S  N  M  A  V  N  K  I  Q  G  H  S  I  H  E  L  V  D  P  T  L  G  F  S  T  N  S  S  V  R  R  M  T  T  L  V  A  E  L  A  F  R  C  L  Q  Q  E  R  D  L  R  P  S  M  Q  E  V  L  E  T  L  R  G  I  Q  N  G  E  S  K  A  H  N  A  E  V  L  D  I  V  V  D  D  A  G  L  L  K  D  S  L  S  S  P  D  S  V  A  A  D  K  *  V  D  S  S  T  P  H  S  S  G  *  N  M  F  F  R  S  V  E  F  D  A  R  *  G  S  N  Y  Y  Y  G  T  C  D  Q  Y  L  A  S  S  I  D  N  L  F  L  I  F  A  Y  I  *  L  C  C  Y  R  Q  Y  F  L  W  E  I  I  *  N  C  F  S  H  K  A  M  Y  K  N  S  E  *  G  C  Q  H  S  S  I  H  M  H  L  C  S  F  V  Y  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011O23.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126685" stop="126886"/>
                    <exon start="126964" stop="127853"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1089</number_coding_nucleotides>
                  <number_encoded_amino_acids>363</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSSSTPSSTTFTRSIPSYPSSKSEADYGRGSSYFGAHVFSFAELEEATNNFDPSKELGDGGFGVVYYGKLHDGRVVAVKRLYENNFKRVEQFMNEVEILTQLRHKNLVTLYGCTSKRSRDLLLVYEYIPNGTVADHLHGKRAKSGLLSWPVRMNIAIETAEALAYLHSSIIIHRDVKTNNILLDNDFHVKVADFGLSRLFPNNVTHVSTAPQGTPGYVDPEYYQCYQLTEKSDVYSFGVVLVELISSLEAVDTNRHRHDINLSNMAVNKIQGHSIHELVDPTLGFSTNSSVRRMTTLVAELAFRCLQQERDLRPSMQEVLETLRGIQNGESKAHNAEVLDIVVDDAGLLKDSLSSPDSVAADK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="131126" PGL_stop="132072"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="131126" e_stop="132072"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="131126" e_stop="132072" e_length="947"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131126" stop="131859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131139" stop="131389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131158" stop="131784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131224" stop="131859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131277" stop="132072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321315" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGACGGTCCATATTATTCGGCCGTACTAAATCCTTCCCAATTCCCCCCATCTTCACTACCATTTTTGCTAACCAAAAAAACAATAGTTAAAATTTGTCGAAATACGTACCTCAGATCGCAACGAAAATGGCTACTTTGCAGAAATTCAAGCTTCTCGCAACTCAATGTGCAGTAGCAGGAAGTCCAACCCGGAGTCCAACAACAAGCCCAGTTATTCACCTCCGCCGACGGAAGACTCTCCGTATGCTCCTCAGTCGTAGCATCGGCGGCGGAAGTGGCCGTAGGCTGCCTCGACGGGAAGTCTGTTCGCCGGATCGGTTTGTTGGAGATCGCGATTCGACGGAGAAGGGGAAGGAACTGGTGGTCAGTCATAAGCTGAAGGACTTGTTTGTTTCGTCGCCTCCGTCGTTTGCTGAAAATACGAGACAAGGACTCTCGCCGGCAGCCTCTGGTGCCGGCGGCGGGTTTAGTTCAGGATCAGCTGTTCGGCGAATAGGCTTACGCTCGCTTCGGCCGTTATCAGCGACATTCCGGCAACGGCTACTGCGGAGGGCTTGGCGGCCTGTACTTGTGAGCATACCCGAGTAAATTACCAATTTACTAGGTATATTGTACCTGATTAATTAGAGATAAAATAAATACGAGTAGTACAATCATATATTAGGAGTTAAAACTTATTAAATTCTCTCTGATTTTGTGGCAAAGTATATCCATTTCACAGCTTAATTCCGTAATTTTTCCAATGTTACGGCAAATTAGCATGAACAATGATCGTAAATTTGAAATTTCATGAATGACTTTAATCTAAAAAGTTCACTTTGTATTTCTCTAATTTAATTATGTGTGTAAGGTTGAAGCAAAAAATTAGTTCCAAATTTCATCTTTTGTGTCTAGAATCTACAGTAAAGTGATTGATTAAAGTTTTGCTGGATTGTTCAAACACTGA</gDNA_template>
            <first_frame> Q  T  V  H  I  I  R  P  Y  *  I  L  P  N  S  P  H  L  H  Y  H  F  C  *  P  K  K  Q  *  L  K  F  V  E  I  R  T  S  D  R  N  E  N  G  Y  F  A  E  I  Q  A  S  R  N  S  M  C  S  S  R  K  S  N  P  E  S  N  N  K  P  S  Y  S  P  P  P  T  E  D  S  P  Y  A  P  Q  S  *  H  R  R  R  K  W  P  *  A  A  S  T  G  S  L  F  A  G  S  V  C  W  R  S  R  F  D  G  E  G  E  G  T  G  G  Q  S  *  A  E  G  L  V  C  F  V  A  S  V  V  C  *  K  Y  E  T  R  T  L  A  G  S  L  W  C  R  R  R  V  *  F  R  I  S  C  S  A  N  R  L  T  L  A  S  A  V  I  S  D  I  P  A  T  A  T  A  E  G  L  A  A  C  T  C  E  H  T  R  V  N  Y  Q  F  T  R  Y  I  V  P  D  *  L  E  I  K  *  I  R  V  V  Q  S  Y  I  R  S  *  N  L  L  N  S  L  *  F  C  G  K  V  Y  P  F  H  S  L  I  P  *  F  F  Q  C  Y  G  K  L  A  *  T  M  I  V  N  L  K  F  H  E  *  L  *  S  K  K  F  T  L  Y  F  S  N  L  I  M  C  V  R  L  K  Q  K  I  S  S  K  F  H  L  L  C  L  E  S  T  V  K  *  L  I  K  V  L  L  D  C  S  N  T   </first_frame>
            <second_frame>  R  R  S  I  L  F  G  R  T  K  S  F  P  I  P  P  I  F  T  T  I  F  A  N  Q  K  N  N  S  *  N  L  S  K  Y  V  P  Q  I  A  T  K  M  A  T  L  Q  K  F  K  L  L  A  T  Q  C  A  V  A  G  S  P  T  R  S  P  T  T  S  P  V  I  H  L  R  R  R  K  T  L  R  M  L  L  S  R  S  I  G  G  G  S  G  R  R  L  P  R  R  E  V  C  S  P  D  R  F  V  G  D  R  D  S  T  E  K  G  K  E  L  V  V  S  H  K  L  K  D  L  F  V  S  S  P  P  S  F  A  E  N  T  R  Q  G  L  S  P  A  A  S  G  A  G  G  G  F  S  S  G  S  A  V  R  R  I  G  L  R  S  L  R  P  L  S  A  T  F  R  Q  R  L  L  R  R  A  W  R  P  V  L  V  S  I  P  E  *  I  T  N  L  L  G  I  L  Y  L  I  N  *  R  *  N  K  Y  E  *  Y  N  H  I  L  G  V  K  T  Y  *  I  L  S  D  F  V  A  K  Y  I  H  F  T  A  *  F  R  N  F  S  N  V  T  A  N  *  H  E  Q  *  S  *  I  *  N  F  M  N  D  F  N  L  K  S  S  L  C  I  S  L  I  *  L  C  V  *  G  *  S  K  K  L  V  P  N  F  I  F  C  V  *  N  L  Q  *  S  D  *  L  K  F  C  W  I  V  Q  T  L  </second_frame>
            <third_frame>   D  G  P  Y  Y  S  A  V  L  N  P  S  Q  F  P  P  S  S  L  P  F  L  L  T  K  K  T  I  V  K  I  C  R  N  T  Y  L  R  S  Q  R  K  W  L  L  C  R  N  S  S  F  S  Q  L  N  V  Q  *  Q  E  V  Q  P  G  V  Q  Q  Q  A  Q  L  F  T  S  A  D  G  R  L  S  V  C  S  S  V  V  A  S  A  A  E  V  A  V  G  C  L  D  G  K  S  V  R  R  I  G  L  L  E  I  A  I  R  R  R  R  G  R  N  W  W  S  V  I  S  *  R  T  C  L  F  R  R  L  R  R  L  L  K  I  R  D  K  D  S  R  R  Q  P  L  V  P  A  A  G  L  V  Q  D  Q  L  F  G  E  *  A  Y  A  R  F  G  R  Y  Q  R  H  S  G  N  G  Y  C  G  G  L  G  G  L  Y  L  *  A  Y  P  S  K  L  P  I  Y  *  V  Y  C  T  *  L  I  R  D  K  I  N  T  S  S  T  I  I  Y  *  E  L  K  L  I  K  F  S  L  I  L  W  Q  S  I  S  I  S  Q  L  N  S  V  I  F  P  M  L  R  Q  I  S  M  N  N  D  R  K  F  E  I  S  *  M  T  L  I  *  K  V  H  F  V  F  L  *  F  N  Y  V  C  K  V  E  A  K  N  *  F  Q  I  S  S  F  V  S  R  I  Y  S  K  V  I  D  *  S  F  A  G  L  F  K  H  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011O23.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131217" stop="131714"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLSKYVPQIATKMATLQKFKLLATQCAVAGSPTRSPTTSPVIHLRRRKTLRMLLSRSIGGGSGRRLPRREVCSPDRFVGDRDSTEKGKELVVSHKLKDLFVSSPPSFAENTRQGLSPAASGAGGGFSSGSAVRRIGLRSLRPLSATFRQRLLRRAWRPVLVSIPE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="135796" PGL_stop="138462"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="135796" e_stop="135909"/>
            <exon e_start="136044" e_stop="136091"/>
            <exon e_start="136236" e_stop="136305"/>
            <exon e_start="136570" e_stop="136660"/>
            <exon e_start="136740" e_stop="136801"/>
            <exon e_start="137898" e_stop="138166"/>
            <exon e_start="138264" e_stop="138297"/>
            <exon e_start="138377" e_stop="138462"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.869" e_score="1.000"/>
          <exon-intron don_prob="0.446" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.883" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.213" e_score="0.993"/>
          <exon-intron don_prob="0.930" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.872"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="135796" e_stop="135909" e_length="114"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="135910" i_stop="136043" i_length="134"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="136044" e_stop="136091" e_length="48"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.999">
            <gDNA_intron_boundary i_start="136092" i_stop="136235" i_length="144"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="136236" e_stop="136305" e_length="70"/>
          </exon>
          <intron i_serial="3" don_prob="0.957" acc_prob="0.869">
            <gDNA_intron_boundary i_start="136306" i_stop="136569" i_length="264"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="136570" e_stop="136660" e_length="91"/>
          </exon>
          <intron i_serial="4" don_prob="0.446" acc_prob="0.999">
            <gDNA_intron_boundary i_start="136661" i_stop="136739" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="136740" e_stop="136801" e_length="62"/>
          </exon>
          <intron i_serial="5" don_prob="0.883" acc_prob="0.984">
            <gDNA_intron_boundary i_start="136802" i_stop="137897" i_length="1096"/>
          </intron>
          <exon e_serial="6" e_score="0.993">
            <gDNA_exon_boundary e_start="137898" e_stop="138166" e_length="269"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="0.213">
            <gDNA_intron_boundary i_start="138167" i_stop="138263" i_length="97"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="138264" e_stop="138297" e_length="34"/>
          </exon>
          <intron i_serial="7" don_prob="0.930" acc_prob="0.998">
            <gDNA_intron_boundary i_start="138298" i_stop="138376" i_length="79"/>
          </intron>
          <exon e_serial="8" e_score="0.872">
            <gDNA_exon_boundary e_start="138377" e_stop="138462" e_length="86"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135796" stop="135909"/>
              <exon start="136044" stop="136091"/>
              <exon start="136236" stop="136305"/>
              <exon start="136570" stop="136660"/>
              <exon start="136740" stop="136801"/>
              <exon start="137898" stop="138166"/>
              <exon start="138264" stop="138297"/>
              <exon start="138377" stop="138462"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135797" stop="135909"/>
              <exon start="136044" stop="136091"/>
              <exon start="136236" stop="136305"/>
              <exon start="136570" stop="136660"/>
              <exon start="136740" stop="136801"/>
              <exon start="137898" stop="138049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325411" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCATATCTCCCGCCAAAGCTTGTCATTCAAATTCTTCATTTTGAGAAACTGAATTGAACAACGCCGCCGGCATTTCCATTCCCCAGTTTTCCGATGTCGGCTTCTTTACCCAAG : ATGGAGGCGCTTTATTCTAAGCTCTACAGCAAGTACGCTAAGCTCAAG : AAAGAAAAAGACACTAGCATGGAGAACCTGAATCGGGAACAAGAGGAGAAATTTGTGAATTATGTGGCTG : CTGCCGATGCAGTGATTGACCACTTGAGAAGTGAAACGGACAGACTAAAGGAACAAGTAAATGAGTTGAGGAGTGAAATGACATCAATGAG : GTCTGCCAATGATGAAGAAATGATTCGATACCAAAAGCTTTTGATGGAAGAGAACCTGAAGA : ATACGGAACTCCGTGATGAAATTCAGAGGCTTCAACAACATGATCAGCAGGGGACCTGTTTCAACGCTAGCAATGATAAAGGAAAAAGCAGACAAATTATTACTGATGGAGATTTTCTTCCAGATGCATTGGATGACTCAACCATAACAAACAAGAAACACTTTAGGCAGTCTTTGCTCATTGTACAAGACACACATACACCGTCTCCCATGGAAGAACTTCCAAATAGACCTGAACAACCAAGTACGAGTTCATATAAGTACACCAAG : CCTGCTTGCTGTAGAAGAAATGTTGACATTTCAG : GTGATAGTGCTGCTGACATATCTCCAGCCTTGTGCATCTTCCAAGACCTTGTTCAGTGGTTAGTCGGTATGAAATTTTTTGCTGTT</gDNA_template>
            <first_frame> P  Y  L  P  P  K  L  V  I  Q  I  L  H  F  E  K  L  N  *  T  T  P  P  A  F  P  F  P  S  F  P  M  S  A  S  L  P  K  :  M  E  A  L  Y  S  K  L  Y  S  K  Y  A  K  L  K  :  K  E  K  D  T  S  M  E  N  L  N  R  E  Q  E  E  K  F  V  N  Y  V  A   : A  A  D  A  V  I  D  H  L  R  S  E  T  D  R  L  K  E  Q  V  N  E  L  R  S  E  M  T  S  M  R :   S  A  N  D  E  E  M  I  R  Y  Q  K  L  L  M  E  E  N  L  K   : N  T  E  L  R  D  E  I  Q  R  L  Q  Q  H  D  Q  Q  G  T  C  F  N  A  S  N  D  K  G  K  S  R  Q  I  I  T  D  G  D  F  L  P  D  A  L  D  D  S  T  I  T  N  K  K  H  F  R  Q  S  L  L  I  V  Q  D  T  H  T  P  S  P  M  E  E  L  P  N  R  P  E  Q  P  S  T  S  S  Y  K  Y  T  K  :  P  A  C  C  R  R  N  V  D  I  S   : G  D  S  A  A  D  I  S  P  A  L  C  I  F  Q  D  L  V  Q  W  L  V  G  M  K  F  F  A  V </first_frame>
            <second_frame>  H  I  S  R  Q  S  L  S  F  K  F  F  I  L  R  N  *  I  E  Q  R  R  R  H  F  H  S  P  V  F  R  C  R  L  L  Y  P  R :   W  R  R  F  I  L  S  S  T  A  S  T  L  S  S  R :   K  K  K  T  L  A  W  R  T  *  I  G  N  K  R  R  N  L  *  I  M  W  L  :  L  P  M  Q  *  L  T  T  *  E  V  K  R  T  D  *  R  N  K  *  M  S  *  G  V  K  *  H  Q  *   : G  L  P  M  M  K  K  *  F  D  T  K  S  F  *  W  K  R  T  *  R  :  I  R  N  S  V  M  K  F  R  G  F  N  N  M  I  S  R  G  P  V  S  T  L  A  M  I  K  E  K  A  D  K  L  L  L  M  E  I  F  F  Q  M  H  W  M  T  Q  P  *  Q  T  R  N  T  L  G  S  L  C  S  L  Y  K  T  H  I  H  R  L  P  W  K  N  F  Q  I  D  L  N  N  Q  V  R  V  H  I  S  T  P  S :   L  L  A  V  E  E  M  L  T  F  Q  :  V  I  V  L  L  T  Y  L  Q  P  C  A  S  S  K  T  L  F  S  G  *  S  V  *  N  F  L  L   </second_frame>
            <third_frame>   I  S  P  A  K  A  C  H  S  N  S  S  F  *  E  T  E  L  N  N  A  A  G  I  S  I  P  Q  F  S  D  V  G  F  F  T  Q   : D  G  G  A  L  F  *  A  L  Q  Q  V  R  *  A  Q   : E  R  K  R  H  *  H  G  E  P  E  S  G  T  R  G  E  I  C  E  L  C  G  C :   C  R  C  S  D  *  P  L  E  K  *  N  G  Q  T  K  G  T  S  K  *  V  E  E  *  N  D  I  N  E  :  V  C  Q  *  *  R  N  D  S  I  P  K  A  F  D  G  R  E  P  E  E :   Y  G  T  P  *  *  N  S  E  A  S  T  T  *  S  A  G  D  L  F  Q  R  *  Q  *  *  R  K  K  Q  T  N  Y  Y  *  W  R  F  S  S  R  C  I  G  *  L  N  H  N  K  Q  E  T  L  *  A  V  F  A  H  C  T  R  H  T  Y  T  V  S  H  G  R  T  S  K  *  T  *  T  T  K  Y  E  F  I  *  V  H  Q   : A  C  L  L  *  K  K  C  *  H  F  R :   *  *  C  C  *  H  I  S  S  L  V  H  L  P  R  P  C  S  V  V  S  R  Y  E  I  F  C  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011O23.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="135853" stop="135909"/>
                    <exon start="136044" stop="136091"/>
                    <exon start="136236" stop="136305"/>
                    <exon start="136570" stop="136660"/>
                    <exon start="136740" stop="136801"/>
                    <exon start="137898" stop="138166"/>
                    <exon start="138264" stop="138297"/>
                    <exon start="138377" stop="138462"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>717</number_coding_nucleotides>
                  <number_encoded_amino_acids>239</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTPPAFPFPSFPMSASLPKMEALYSKLYSKYAKLKKEKDTSMENLNREQEEKFVNYVAAADAVIDHLRSETDRLKEQVNELRSEMTSMRSANDEEMIRYQKLLMEENLKNTELRDEIQRLQQHDQQGTCFNASNDKGKSRQIITDGDFLPDALDDSTITNKKHFRQSLLIVQDTHTPSPMEELPNRPEQPSTSSYKYTKPACCRRNVDISGDSAADISPALCIFQDLVQWLVGMKFFAV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="146320" PGL_stop="142235"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="146320" e_stop="146234"/>
            <exon e_start="146134" e_stop="145984"/>
            <exon e_start="144401" e_stop="144206"/>
            <exon e_start="143879" e_stop="143455"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.889" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.958" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="146320" e_stop="146234" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.889" acc_prob="0.991">
            <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="146134" e_stop="145984" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.978">
            <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="144401" e_stop="144206" e_length="196"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.958">
            <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="143879" e_stop="143455" e_length="425"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146320" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146318" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146315" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146313" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146305" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146304" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146304" stop="146234"/>
              <exon start="146134" stop="146043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146303" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146303" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146298" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146298" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146298" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146298" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146298" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146298" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146298" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146297" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146297" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146297" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146297" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146297" stop="146234"/>
              <exon start="146134" stop="146019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146295" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146295" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146295" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146294" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146293" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146292" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146292" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146287" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146287" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146286" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146286" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146281" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146281" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146281" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146280" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146278" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146278" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146277" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146275" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146266" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146235" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146235" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146120" stop="145984"/>
              <exon start="144401" stop="144319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146115" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146114" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146105" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146033" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146011" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144327" stop="144206"/>
              <exon start="143879" stop="143455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144327" stop="144206"/>
              <exon start="143879" stop="143458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144304" stop="144206"/>
              <exon start="143879" stop="143509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144292" stop="144206"/>
              <exon start="143879" stop="143467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390982" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144248" stop="144206"/>
              <exon start="143879" stop="143550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288148" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTACGACAATTTCCGCCCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG : GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG : CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA : ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTAATTTTCAGTTTTTGCAATTTAAGTAGGAATTATTCAACTACACAATTGTG</gDNA_template>
            <first_frame> I  T  T  I  S  A  L  S  E  S  Q  Y  P  F  N  S  A  A  A  A  E  T  S  S  R  G  S  A  M  :  A  S  E  K  K  L  S  N  P  M  R  D  I  K  V  Q  K  L  V  L  N  I  S  V  G  E  S  G  D  R  L  T  R  A  A  K  V  L  E  Q  L  S  G  Q  S  P  V  F  S  K   : A  R  Y  T  V  R  S  F  G  I  R  R  N  E  K  I  A  C  Y  V  T  V  R  G  E  K  A  M  Q  L  L  E  S  G  L  K  V  K  E  Y  E  L  L  R  R  N  F  S  E  T  G  C  F  G  F  G  I  Q  E  H  I  D  L  G  I  K :   Y  D  P  S  T  G  I  Y  G  M  D  F  Y  V  V  L  E  R  P  G  Y  R  V  A  R  R  R  R  C  K  S  R  V  G  I  Q  H  R  V  T  K  E  D  S  M  K  W  F  Q  V  K  Y  E  G  V  I  L  N  K  S  S  N  I  Q  *  *  A  E  C  Q  L  L  D  Q  L  V  S  W  Q  V  Y  F  Y  V  F  L  *  T  A  I  D  I  T  I  K  G  M  F  W  R  D  S  S  W  Q  I  S  M  F  Y  F  S  F  W  Q  S  D  E  F  K  S  L  *  W  *  F  S  V  F  A  I  *  V  G  I  I  Q  L  H  N  C  </first_frame>
            <second_frame>  L  R  Q  F  P  P  S  Q  S  L  S  T  P  S  T  L  L  P  Q  L  K  H  L  P  V  E  A  P  W :   L  Q  R  R  N  *  A  I  P  *  G  I  S  R  S  R  S  L  S  S  I  S  P  S  V  R  V  E  I  D  S  P  E  Q  R  K  S  W  S  N  S  A  V  N  P  L  F  S  L  R  :  Q  G  I  L  C  G  P  L  E  S  G  V  M  K  R  *  L  A  M  *  L  S  E  G  R  K  L  C  S  F  L  R  V  D  *  K  L  R  N  T  S  C  *  E  G  T  S  V  R  P  A  A  L  G  L  V  F  R  S  T  L  I  L  E  L   : N  M  I  L  Q  L  V  F  M  E  W  I  S  M  L  Y  W  S  A  L  A  T  V  L  P  V  V  A  G  A  S  L  E  S  G  F  S  T  G  S  L  R  R  I  Q  *  S  G  S  R  S  N  M  K  V  L  S  L  T  S  P  Q  T  F  S  D  K  L  S  A  N  F  W  T  S  L  S  P  G  K  F  I  F  M  Y  F  C  R  Q  P  S  I  L  L  L  K  E  C  F  G  E  I  L  V  G  K  L  V  C  F  T  S  H  F  G  N  Q  M  N  S  N  L  C  D  G  N  F  Q  F  L  Q  F  K  *  E  L  F  N  Y  T  I  V </second_frame>
            <third_frame>   Y  D  N  F  R  P  L  R  V  S  V  P  L  Q  L  C  C  R  S  *  N  I  F  P  W  K  R  H   : G  F  R  E  E  I  E  Q  S  H  E  G  Y  Q  G  P  E  A  C  P  Q  Y  L  R  R  *  E  W  R  S  T  H  Q  S  S  E  S  L  G  A  T  Q  R  S  I  P  C  F  L  *  G :   K  V  Y  C  A  V  L  W  N  Q  A  *  *  K  D  S  L  L  C  D  C  Q  R  G  E  S  Y  A  A  S  *  E  W  I  E  S  *  G  I  R  V  V  E  K  E  L  Q  *  D  R  L  L  W  V  W  Y  S  G  A  H  *  S  W  N  *  :  I  *  S  F  N  W  Y  L  W  N  G  F  L  C  C  I  G  A  P  W  L  P  C  C  P  S  S  Q  V  Q  V  S  S  R  D  S  A  Q  G  H  *  G  G  F  N  E  V  V  P  G  Q  I  *  R  C  Y  P  *  Q  V  L  K  H  S  V  I  S  *  V  P  T  F  G  P  A  C  L  L  A  S  L  F  L  C  I  F  V  D  S  H  R  Y  Y  Y  *  R  N  V  L  E  R  F  *  L  A  N  *  Y  V  L  L  L  I  L  A  I  R  *  I  Q  I  F  V  M  V  I  F  S  F  C  N  L  S  R  N  Y  S  T  T  Q  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011O23.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146320" stop="146234"/>
                    <exon start="146134" stop="145984"/>
                    <exon start="144401" stop="144206"/>
                    <exon start="143879" stop="143684"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>627</number_coding_nucleotides>
                  <number_encoded_amino_acids>209</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITTISALSESQYPFNSAAAAETSSRGSAMASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSSNIQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="146320" e_stop="146234"/>
            <exon e_start="146134" e_stop="145984"/>
            <exon e_start="144401" e_stop="144206"/>
            <exon e_start="143879" e_stop="143461"/>
            <exon e_start="142842" e_stop="142823"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.889" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.966" e_score="1.000"/>
          <exon-only e_score="0.550"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="146320" e_stop="146234" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.889" acc_prob="0.991">
            <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="146134" e_stop="145984" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.978">
            <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="144401" e_stop="144206" e_length="196"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.958">
            <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="143879" e_stop="143461" e_length="419"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.966">
            <gDNA_intron_boundary i_start="143460" i_stop="142843" i_length="618"/>
          </intron>
          <exon e_serial="5" e_score="0.550">
            <gDNA_exon_boundary e_start="142842" e_stop="142823" e_length="20"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146320" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146318" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146315" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146313" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146305" stop="146234"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146304" stop="146234"/>
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            <referenceDNA id="SGN-E345961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146304" stop="146234"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339101" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146303" stop="146234"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146303" stop="146234"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146298" stop="146234"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146298" stop="146234"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146298" stop="146234"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146298" stop="146234"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146298" stop="146234"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233110" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E231945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146297" stop="146234"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E227008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312661" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E339180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146295" stop="146234"/>
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            <referenceDNA id="SGN-E459854" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146295" stop="146234"/>
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            <referenceDNA id="SGN-E461164" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E559692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E731357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146293" stop="146234"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E446391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146292" stop="146234"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439797" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E443875" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E443874" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="142842" stop="142823"/>
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            <referenceDNA id="SGN-E423101" strand="-"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E423100" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E449727" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E335273" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E348270" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E298651" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E344585" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E440084" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E440083" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E344976" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E336522" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E306331" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E349684" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E351383" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146134" stop="145984"/>
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            <referenceDNA id="SGN-E451085" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E442183" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E337412" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E284175" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146134" stop="145984"/>
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            <referenceDNA id="SGN-E446804" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146134" stop="145984"/>
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            <referenceDNA id="SGN-E312173" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E316646" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E473730" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146120" stop="145984"/>
              <exon start="144401" stop="144319"/>
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            <referenceDNA id="SGN-E443877" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146115" stop="145984"/>
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              <exon start="143879" stop="143802"/>
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            <referenceDNA id="SGN-E471270" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146114" stop="145984"/>
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            <referenceDNA id="SGN-E338371" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146033" stop="145984"/>
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            <referenceDNA id="SGN-E734806" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146011" stop="145984"/>
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            <referenceDNA id="SGN-E600497" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144304" stop="144206"/>
              <exon start="143879" stop="143509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144292" stop="144206"/>
              <exon start="143879" stop="143467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390982" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144248" stop="144206"/>
              <exon start="143879" stop="143550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288148" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTACGACAATTTCCGCCCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG : GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG : CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA : ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTAATTTTCAGTTTTTGCAATTTAAGTAGGAATTATTCAACTACACA : GTTAATTCGTTAAGAAAAAA</gDNA_template>
            <first_frame> I  T  T  I  S  A  L  S  E  S  Q  Y  P  F  N  S  A  A  A  A  E  T  S  S  R  G  S  A  M  :  A  S  E  K  K  L  S  N  P  M  R  D  I  K  V  Q  K  L  V  L  N  I  S  V  G  E  S  G  D  R  L  T  R  A  A  K  V  L  E  Q  L  S  G  Q  S  P  V  F  S  K   : A  R  Y  T  V  R  S  F  G  I  R  R  N  E  K  I  A  C  Y  V  T  V  R  G  E  K  A  M  Q  L  L  E  S  G  L  K  V  K  E  Y  E  L  L  R  R  N  F  S  E  T  G  C  F  G  F  G  I  Q  E  H  I  D  L  G  I  K :   Y  D  P  S  T  G  I  Y  G  M  D  F  Y  V  V  L  E  R  P  G  Y  R  V  A  R  R  R  R  C  K  S  R  V  G  I  Q  H  R  V  T  K  E  D  S  M  K  W  F  Q  V  K  Y  E  G  V  I  L  N  K  S  S  N  I  Q  *  *  A  E  C  Q  L  L  D  Q  L  V  S  W  Q  V  Y  F  Y  V  F  L  *  T  A  I  D  I  T  I  K  G  M  F  W  R  D  S  S  W  Q  I  S  M  F  Y  F  S  F  W  Q  S  D  E  F  K  S  L  *  W  *  F  S  V  F  A  I  *  V  G  I  I  Q  L  H   : S  *  F  V  K  K  K </first_frame>
            <second_frame>  L  R  Q  F  P  P  S  Q  S  L  S  T  P  S  T  L  L  P  Q  L  K  H  L  P  V  E  A  P  W :   L  Q  R  R  N  *  A  I  P  *  G  I  S  R  S  R  S  L  S  S  I  S  P  S  V  R  V  E  I  D  S  P  E  Q  R  K  S  W  S  N  S  A  V  N  P  L  F  S  L  R  :  Q  G  I  L  C  G  P  L  E  S  G  V  M  K  R  *  L  A  M  *  L  S  E  G  R  K  L  C  S  F  L  R  V  D  *  K  L  R  N  T  S  C  *  E  G  T  S  V  R  P  A  A  L  G  L  V  F  R  S  T  L  I  L  E  L   : N  M  I  L  Q  L  V  F  M  E  W  I  S  M  L  Y  W  S  A  L  A  T  V  L  P  V  V  A  G  A  S  L  E  S  G  F  S  T  G  S  L  R  R  I  Q  *  S  G  S  R  S  N  M  K  V  L  S  L  T  S  P  Q  T  F  S  D  K  L  S  A  N  F  W  T  S  L  S  P  G  K  F  I  F  M  Y  F  C  R  Q  P  S  I  L  L  L  K  E  C  F  G  E  I  L  V  G  K  L  V  C  F  T  S  H  F  G  N  Q  M  N  S  N  L  C  D  G  N  F  Q  F  L  Q  F  K  *  E  L  F  N  Y  T  :  V  N  S  L  R  K   </second_frame>
            <third_frame>   Y  D  N  F  R  P  L  R  V  S  V  P  L  Q  L  C  C  R  S  *  N  I  F  P  W  K  R  H   : G  F  R  E  E  I  E  Q  S  H  E  G  Y  Q  G  P  E  A  C  P  Q  Y  L  R  R  *  E  W  R  S  T  H  Q  S  S  E  S  L  G  A  T  Q  R  S  I  P  C  F  L  *  G :   K  V  Y  C  A  V  L  W  N  Q  A  *  *  K  D  S  L  L  C  D  C  Q  R  G  E  S  Y  A  A  S  *  E  W  I  E  S  *  G  I  R  V  V  E  K  E  L  Q  *  D  R  L  L  W  V  W  Y  S  G  A  H  *  S  W  N  *  :  I  *  S  F  N  W  Y  L  W  N  G  F  L  C  C  I  G  A  P  W  L  P  C  C  P  S  S  Q  V  Q  V  S  S  R  D  S  A  Q  G  H  *  G  G  F  N  E  V  V  P  G  Q  I  *  R  C  Y  P  *  Q  V  L  K  H  S  V  I  S  *  V  P  T  F  G  P  A  C  L  L  A  S  L  F  L  C  I  F  V  D  S  H  R  Y  Y  Y  *  R  N  V  L  E  R  F  *  L  A  N  *  Y  V  L  L  L  I  L  A  I  R  *  I  Q  I  F  V  M  V  I  F  S  F  C  N  L  S  R  N  Y  S  T  T  Q :   L  I  R  *  E  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011O23.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146320" stop="146234"/>
                    <exon start="146134" stop="145984"/>
                    <exon start="144401" stop="144206"/>
                    <exon start="143879" stop="143684"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>627</number_coding_nucleotides>
                  <number_encoded_amino_acids>209</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITTISALSESQYPFNSAAAAETSSRGSAMASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSSNIQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="146320" e_stop="146234"/>
            <exon e_start="146134" e_stop="145984"/>
            <exon e_start="144401" e_stop="144206"/>
            <exon e_start="143879" e_stop="143469"/>
            <exon e_start="142807" e_stop="142776"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.889" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.688"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="146320" e_stop="146234" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.889" acc_prob="0.991">
            <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="146134" e_stop="145984" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.978">
            <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="144401" e_stop="144206" e_length="196"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.958">
            <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="143879" e_stop="143469" e_length="411"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="143468" i_stop="142808" i_length="661"/>
          </intron>
          <exon e_serial="5" e_score="0.688">
            <gDNA_exon_boundary e_start="142807" e_stop="142776" e_length="32"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146320" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146318" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146316" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143469"/>
              <exon start="142807" stop="142776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719941" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146315" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146313" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146305" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146304" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146304" stop="146234"/>
              <exon start="146134" stop="146043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146303" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146303" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146298" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146298" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146298" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146298" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146298" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146298" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146298" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146297" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146297" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146297" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146297" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146297" stop="146234"/>
              <exon start="146134" stop="146019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146295" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146295" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146295" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146293" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146292" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146292" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146287" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146287" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146286" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146286" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146281" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146281" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146281" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146280" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146278" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146278" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146277" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146275" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146266" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146235" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146235" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146120" stop="145984"/>
              <exon start="144401" stop="144319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146115" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146114" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146033" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146011" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144304" stop="144206"/>
              <exon start="143879" stop="143509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144248" stop="144206"/>
              <exon start="143879" stop="143550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288148" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTACGACAATTTCCGCCCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG : GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG : CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA : ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATGGTAATTTTCAGTTTTTGCAATTTAAGTAGGAATTATTCA : AACTAATAACCCAAGAACAAAAAAAATTGAAA</gDNA_template>
            <first_frame> I  T  T  I  S  A  L  S  E  S  Q  Y  P  F  N  S  A  A  A  A  E  T  S  S  R  G  S  A  M  :  A  S  E  K  K  L  S  N  P  M  R  D  I  K  V  Q  K  L  V  L  N  I  S  V  G  E  S  G  D  R  L  T  R  A  A  K  V  L  E  Q  L  S  G  Q  S  P  V  F  S  K   : A  R  Y  T  V  R  S  F  G  I  R  R  N  E  K  I  A  C  Y  V  T  V  R  G  E  K  A  M  Q  L  L  E  S  G  L  K  V  K  E  Y  E  L  L  R  R  N  F  S  E  T  G  C  F  G  F  G  I  Q  E  H  I  D  L  G  I  K :   Y  D  P  S  T  G  I  Y  G  M  D  F  Y  V  V  L  E  R  P  G  Y  R  V  A  R  R  R  R  C  K  S  R  V  G  I  Q  H  R  V  T  K  E  D  S  M  K  W  F  Q  V  K  Y  E  G  V  I  L  N  K  S  S  N  I  Q  *  *  A  E  C  Q  L  L  D  Q  L  V  S  W  Q  V  Y  F  Y  V  F  L  *  T  A  I  D  I  T  I  K  G  M  F  W  R  D  S  S  W  Q  I  S  M  F  Y  F  S  F  W  Q  S  D  E  F  K  S  L  *  W  *  F  S  V  F  A  I  *  V  G  I  I  Q :   T  N  N  P  R  T  K  K  I  E  </first_frame>
            <second_frame>  L  R  Q  F  P  P  S  Q  S  L  S  T  P  S  T  L  L  P  Q  L  K  H  L  P  V  E  A  P  W :   L  Q  R  R  N  *  A  I  P  *  G  I  S  R  S  R  S  L  S  S  I  S  P  S  V  R  V  E  I  D  S  P  E  Q  R  K  S  W  S  N  S  A  V  N  P  L  F  S  L  R  :  Q  G  I  L  C  G  P  L  E  S  G  V  M  K  R  *  L  A  M  *  L  S  E  G  R  K  L  C  S  F  L  R  V  D  *  K  L  R  N  T  S  C  *  E  G  T  S  V  R  P  A  A  L  G  L  V  F  R  S  T  L  I  L  E  L   : N  M  I  L  Q  L  V  F  M  E  W  I  S  M  L  Y  W  S  A  L  A  T  V  L  P  V  V  A  G  A  S  L  E  S  G  F  S  T  G  S  L  R  R  I  Q  *  S  G  S  R  S  N  M  K  V  L  S  L  T  S  P  Q  T  F  S  D  K  L  S  A  N  F  W  T  S  L  S  P  G  K  F  I  F  M  Y  F  C  R  Q  P  S  I  L  L  L  K  E  C  F  G  E  I  L  V  G  K  L  V  C  F  T  S  H  F  G  N  Q  M  N  S  N  L  C  D  G  N  F  Q  F  L  Q  F  K  *  E  L  F   : K  L  I  T  Q  E  Q  K  K  L  K </second_frame>
            <third_frame>   Y  D  N  F  R  P  L  R  V  S  V  P  L  Q  L  C  C  R  S  *  N  I  F  P  W  K  R  H   : G  F  R  E  E  I  E  Q  S  H  E  G  Y  Q  G  P  E  A  C  P  Q  Y  L  R  R  *  E  W  R  S  T  H  Q  S  S  E  S  L  G  A  T  Q  R  S  I  P  C  F  L  *  G :   K  V  Y  C  A  V  L  W  N  Q  A  *  *  K  D  S  L  L  C  D  C  Q  R  G  E  S  Y  A  A  S  *  E  W  I  E  S  *  G  I  R  V  V  E  K  E  L  Q  *  D  R  L  L  W  V  W  Y  S  G  A  H  *  S  W  N  *  :  I  *  S  F  N  W  Y  L  W  N  G  F  L  C  C  I  G  A  P  W  L  P  C  C  P  S  S  Q  V  Q  V  S  S  R  D  S  A  Q  G  H  *  G  G  F  N  E  V  V  P  G  Q  I  *  R  C  Y  P  *  Q  V  L  K  H  S  V  I  S  *  V  P  T  F  G  P  A  C  L  L  A  S  L  F  L  C  I  F  V  D  S  H  R  Y  Y  Y  *  R  N  V  L  E  R  F  *  L  A  N  *  Y  V  L  L  L  I  L  A  I  R  *  I  Q  I  F  V  M  V  I  F  S  F  C  N  L  S  R  N  Y  S  :  N  *  *  P  K  N  K  K  N  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011O23.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146320" stop="146234"/>
                    <exon start="146134" stop="145984"/>
                    <exon start="144401" stop="144206"/>
                    <exon start="143879" stop="143684"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>627</number_coding_nucleotides>
                  <number_encoded_amino_acids>209</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITTISALSESQYPFNSAAAAETSSRGSAMASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSSNIQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="146320" e_stop="146234"/>
            <exon e_start="146134" e_stop="145984"/>
            <exon e_start="144401" e_stop="144206"/>
            <exon e_start="143879" e_stop="143508"/>
            <exon e_start="142262" e_stop="142235"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.889" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.198" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.714"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="146320" e_stop="146234" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.889" acc_prob="0.991">
            <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="146134" e_stop="145984" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.978">
            <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="144401" e_stop="144206" e_length="196"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.958">
            <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="143879" e_stop="143508" e_length="372"/>
          </exon>
          <intron i_serial="4" don_prob="0.198" acc_prob="0.000">
            <gDNA_intron_boundary i_start="143507" i_stop="142263" i_length="1245"/>
          </intron>
          <exon e_serial="5" e_score="0.714">
            <gDNA_exon_boundary e_start="142262" e_stop="142235" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146320" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146318" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146315" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146313" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143508"/>
              <exon start="142262" stop="142235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146305" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146304" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146304" stop="146234"/>
              <exon start="146134" stop="146043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146303" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146303" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146298" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146298" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146298" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146298" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146298" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146298" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146298" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146297" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146297" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146297" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146297" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146297" stop="146234"/>
              <exon start="146134" stop="146019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146295" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146295" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146295" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146293" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146292" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146292" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146287" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146287" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146286" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146286" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146281" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146281" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146281" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146280" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146278" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146278" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146277" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146275" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146266" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146235" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146235" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146120" stop="145984"/>
              <exon start="144401" stop="144319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146115" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146114" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146033" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146011" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144304" stop="144206"/>
              <exon start="143879" stop="143509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144248" stop="144206"/>
              <exon start="143879" stop="143550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288148" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTACGACAATTTCCGCCCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG : GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG : CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA : ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTTGTGATG : TTAAAAAAATAATAATAATCAAATTCCA</gDNA_template>
            <first_frame> I  T  T  I  S  A  L  S  E  S  Q  Y  P  F  N  S  A  A  A  A  E  T  S  S  R  G  S  A  M  :  A  S  E  K  K  L  S  N  P  M  R  D  I  K  V  Q  K  L  V  L  N  I  S  V  G  E  S  G  D  R  L  T  R  A  A  K  V  L  E  Q  L  S  G  Q  S  P  V  F  S  K   : A  R  Y  T  V  R  S  F  G  I  R  R  N  E  K  I  A  C  Y  V  T  V  R  G  E  K  A  M  Q  L  L  E  S  G  L  K  V  K  E  Y  E  L  L  R  R  N  F  S  E  T  G  C  F  G  F  G  I  Q  E  H  I  D  L  G  I  K :   Y  D  P  S  T  G  I  Y  G  M  D  F  Y  V  V  L  E  R  P  G  Y  R  V  A  R  R  R  R  C  K  S  R  V  G  I  Q  H  R  V  T  K  E  D  S  M  K  W  F  Q  V  K  Y  E  G  V  I  L  N  K  S  S  N  I  Q  *  *  A  E  C  Q  L  L  D  Q  L  V  S  W  Q  V  Y  F  Y  V  F  L  *  T  A  I  D  I  T  I  K  G  M  F  W  R  D  S  S  W  Q  I  S  M  F  Y  F  S  F  W  Q  S  D  E  F  K  S  L  *  C :   *  K  N  N  N  N  Q  I  P </first_frame>
            <second_frame>  L  R  Q  F  P  P  S  Q  S  L  S  T  P  S  T  L  L  P  Q  L  K  H  L  P  V  E  A  P  W :   L  Q  R  R  N  *  A  I  P  *  G  I  S  R  S  R  S  L  S  S  I  S  P  S  V  R  V  E  I  D  S  P  E  Q  R  K  S  W  S  N  S  A  V  N  P  L  F  S  L  R  :  Q  G  I  L  C  G  P  L  E  S  G  V  M  K  R  *  L  A  M  *  L  S  E  G  R  K  L  C  S  F  L  R  V  D  *  K  L  R  N  T  S  C  *  E  G  T  S  V  R  P  A  A  L  G  L  V  F  R  S  T  L  I  L  E  L   : N  M  I  L  Q  L  V  F  M  E  W  I  S  M  L  Y  W  S  A  L  A  T  V  L  P  V  V  A  G  A  S  L  E  S  G  F  S  T  G  S  L  R  R  I  Q  *  S  G  S  R  S  N  M  K  V  L  S  L  T  S  P  Q  T  F  S  D  K  L  S  A  N  F  W  T  S  L  S  P  G  K  F  I  F  M  Y  F  C  R  Q  P  S  I  L  L  L  K  E  C  F  G  E  I  L  V  G  K  L  V  C  F  T  S  H  F  G  N  Q  M  N  S  N  L  C  D   : V  K  K  I  I  I  I  K  F   </second_frame>
            <third_frame>   Y  D  N  F  R  P  L  R  V  S  V  P  L  Q  L  C  C  R  S  *  N  I  F  P  W  K  R  H   : G  F  R  E  E  I  E  Q  S  H  E  G  Y  Q  G  P  E  A  C  P  Q  Y  L  R  R  *  E  W  R  S  T  H  Q  S  S  E  S  L  G  A  T  Q  R  S  I  P  C  F  L  *  G :   K  V  Y  C  A  V  L  W  N  Q  A  *  *  K  D  S  L  L  C  D  C  Q  R  G  E  S  Y  A  A  S  *  E  W  I  E  S  *  G  I  R  V  V  E  K  E  L  Q  *  D  R  L  L  W  V  W  Y  S  G  A  H  *  S  W  N  *  :  I  *  S  F  N  W  Y  L  W  N  G  F  L  C  C  I  G  A  P  W  L  P  C  C  P  S  S  Q  V  Q  V  S  S  R  D  S  A  Q  G  H  *  G  G  F  N  E  V  V  P  G  Q  I  *  R  C  Y  P  *  Q  V  L  K  H  S  V  I  S  *  V  P  T  F  G  P  A  C  L  L  A  S  L  F  L  C  I  F  V  D  S  H  R  Y  Y  Y  *  R  N  V  L  E  R  F  *  L  A  N  *  Y  V  L  L  L  I  L  A  I  R  *  I  Q  I  F  V  M  :  L  K  K  *  *  *  S  N  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011O23.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146320" stop="146234"/>
                    <exon start="146134" stop="145984"/>
                    <exon start="144401" stop="144206"/>
                    <exon start="143879" stop="143684"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>627</number_coding_nucleotides>
                  <number_encoded_amino_acids>209</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITTISALSESQYPFNSAAAAETSSRGSAMASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSSNIQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="146318" e_stop="146234"/>
            <exon e_start="146134" e_stop="145984"/>
            <exon e_start="144401" e_stop="144206"/>
            <exon e_start="143879" e_stop="143514"/>
            <exon e_start="142842" e_stop="142813"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.889" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.966" e_score="1.000"/>
          <exon-only e_score="0.567"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="146318" e_stop="146234" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.889" acc_prob="0.991">
            <gDNA_intron_boundary i_start="146233" i_stop="146135" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="146134" e_stop="145984" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.978">
            <gDNA_intron_boundary i_start="145983" i_stop="144402" i_length="1582"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="144401" e_stop="144206" e_length="196"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.958">
            <gDNA_intron_boundary i_start="144205" i_stop="143880" i_length="326"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="143879" e_stop="143514" e_length="366"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.966">
            <gDNA_intron_boundary i_start="143513" i_stop="142843" i_length="671"/>
          </intron>
          <exon e_serial="5" e_score="0.567">
            <gDNA_exon_boundary e_start="142842" e_stop="142813" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146318" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146305" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146304" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146304" stop="146234"/>
              <exon start="146134" stop="146043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146303" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146303" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146298" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146298" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146298" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146298" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143629"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146298" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146298" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146298" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146297" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307533" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146297" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146297" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146297" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312661" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146297" stop="146234"/>
              <exon start="146134" stop="146019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146295" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146295" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146295" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146293" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146292" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146292" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146287" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146287" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146286" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146281" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146281" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146281" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146280" stop="146234"/>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146278" stop="146234"/>
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              <exon start="143879" stop="143673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146278" stop="146234"/>
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              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146277" stop="146234"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344976" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146275" stop="146234"/>
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              <exon start="143879" stop="143723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146266" stop="146234"/>
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              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146235" stop="146234"/>
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              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146235" stop="146234"/>
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              <exon start="143879" stop="143780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316646" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146134" stop="145984"/>
              <exon start="144401" stop="144206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146120" stop="145984"/>
              <exon start="144401" stop="144319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146115" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146114" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146033" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146011" stop="145984"/>
              <exon start="144401" stop="144206"/>
              <exon start="143879" stop="143792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="144248" stop="144206"/>
              <exon start="143879" stop="143550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288148" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143780" stop="143514"/>
              <exon start="142842" stop="142813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567068" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACGACAATTTCCGCCCTCTCAGAGTCTCAGTACCCCTTCAACTCTGCTGCCGCAGCTGAAACATCTTCCCGTGGAAGCGCCATG : GCTTCAGAGAAGAAATTGAGCAATCCCATGAGGGATATCAAGGTCCAGAAGCTTGTCCTCAATATCTCCGTCGGTGAGAGTGGAGATCGACTCACCAGAGCAGCGAAAGTCTTGGAGCAACTCAGCGGTCAATCCCCTGTTTTCTCTAAGG : CAAGGTATACTGTGCGGTCCTTTGGAATCAGGCGTAATGAAAAGATAGCTTGCTATGTGACTGTCAGAGGGGAGAAAGCTATGCAGCTTCTTGAGAGTGGATTGAAAGTTAAGGAATACGAGTTGTTGAGAAGGAACTTCAGTGAGACCGGCTGCTTTGGGTTTGGTATTCAGGAGCACATTGATCTTGGAATTAA : ATATGATCCTTCAACTGGTATTTATGGAATGGATTTCTATGTTGTATTGGAGCGCCCTGGCTACCGTGTTGCCCGTCGTCGCAGGTGCAAGTCTCGAGTCGGGATTCAGCACAGGGTCACTAAGGAGGATTCAATGAAGTGGTTCCAGGTCAAATATGAAGGTGTTATCCTTAACAAGTCCTCAAACATTCAGTGATAAGCTGAGTGCCAACTTTTGGACCAGCTTGTCTCCTGGCAAGTTTATTTTTATGTATTTTTGTAGACAGCCATCGATATTACTATTAAAGGAATGTTTTGGAGAGATTCTAGTTGGCAAATTAGTATGTTTTACTTCTCATTTTGGCAATCAGATGAATTCAAATCTTT : GTTAATTCGTTAAGAAAAAACTCCAAATCG</gDNA_template>
            <first_frame> Y  D  N  F  R  P  L  R  V  S  V  P  L  Q  L  C  C  R  S  *  N  I  F  P  W  K  R  H   : G  F  R  E  E  I  E  Q  S  H  E  G  Y  Q  G  P  E  A  C  P  Q  Y  L  R  R  *  E  W  R  S  T  H  Q  S  S  E  S  L  G  A  T  Q  R  S  I  P  C  F  L  *  G :   K  V  Y  C  A  V  L  W  N  Q  A  *  *  K  D  S  L  L  C  D  C  Q  R  G  E  S  Y  A  A  S  *  E  W  I  E  S  *  G  I  R  V  V  E  K  E  L  Q  *  D  R  L  L  W  V  W  Y  S  G  A  H  *  S  W  N  *  :  I  *  S  F  N  W  Y  L  W  N  G  F  L  C  C  I  G  A  P  W  L  P  C  C  P  S  S  Q  V  Q  V  S  S  R  D  S  A  Q  G  H  *  G  G  F  N  E  V  V  P  G  Q  I  *  R  C  Y  P  *  Q  V  L  K  H  S  V  I  S  *  V  P  T  F  G  P  A  C  L  L  A  S  L  F  L  C  I  F  V  D  S  H  R  Y  Y  Y  *  R  N  V  L  E  R  F  *  L  A  N  *  Y  V  L  L  L  I  L  A  I  R  *  I  Q  I  F  :  V  N  S  L  R  K  N  S  K  S </first_frame>
            <second_frame>  T  T  I  S  A  L  S  E  S  Q  Y  P  F  N  S  A  A  A  A  E  T  S  S  R  G  S  A  M  :  A  S  E  K  K  L  S  N  P  M  R  D  I  K  V  Q  K  L  V  L  N  I  S  V  G  E  S  G  D  R  L  T  R  A  A  K  V  L  E  Q  L  S  G  Q  S  P  V  F  S  K   : A  R  Y  T  V  R  S  F  G  I  R  R  N  E  K  I  A  C  Y  V  T  V  R  G  E  K  A  M  Q  L  L  E  S  G  L  K  V  K  E  Y  E  L  L  R  R  N  F  S  E  T  G  C  F  G  F  G  I  Q  E  H  I  D  L  G  I  K :   Y  D  P  S  T  G  I  Y  G  M  D  F  Y  V  V  L  E  R  P  G  Y  R  V  A  R  R  R  R  C  K  S  R  V  G  I  Q  H  R  V  T  K  E  D  S  M  K  W  F  Q  V  K  Y  E  G  V  I  L  N  K  S  S  N  I  Q  *  *  A  E  C  Q  L  L  D  Q  L  V  S  W  Q  V  Y  F  Y  V  F  L  *  T  A  I  D  I  T  I  K  G  M  F  W  R  D  S  S  W  Q  I  S  M  F  Y  F  S  F  W  Q  S  D  E  F  K  S  L :   L  I  R  *  E  K  T  P  N   </second_frame>
            <third_frame>   R  Q  F  P  P  S  Q  S  L  S  T  P  S  T  L  L  P  Q  L  K  H  L  P  V  E  A  P  W :   L  Q  R  R  N  *  A  I  P  *  G  I  S  R  S  R  S  L  S  S  I  S  P  S  V  R  V  E  I  D  S  P  E  Q  R  K  S  W  S  N  S  A  V  N  P  L  F  S  L  R  :  Q  G  I  L  C  G  P  L  E  S  G  V  M  K  R  *  L  A  M  *  L  S  E  G  R  K  L  C  S  F  L  R  V  D  *  K  L  R  N  T  S  C  *  E  G  T  S  V  R  P  A  A  L  G  L  V  F  R  S  T  L  I  L  E  L   : N  M  I  L  Q  L  V  F  M  E  W  I  S  M  L  Y  W  S  A  L  A  T  V  L  P  V  V  A  G  A  S  L  E  S  G  F  S  T  G  S  L  R  R  I  Q  *  S  G  S  R  S  N  M  K  V  L  S  L  T  S  P  Q  T  F  S  D  K  L  S  A  N  F  W  T  S  L  S  P  G  K  F  I  F  M  Y  F  C  R  Q  P  S  I  L  L  L  K  E  C  F  G  E  I  L  V  G  K  L  V  C  F  T  S  H  F  G  N  Q  M  N  S  N  L   : C  *  F  V  K  K  K  L  Q  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011O23.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146317" stop="146234"/>
                    <exon start="146134" stop="145984"/>
                    <exon start="144401" stop="144206"/>
                    <exon start="143879" stop="143684"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>624</number_coding_nucleotides>
                  <number_encoded_amino_acids>208</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTISALSESQYPFNSAAAAETSSRGSAMASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKSRVGIQHRVTKEDSMKWFQVKYEGVILNKSSNIQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="143465" PGL_stop="143863"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="143465" e_stop="143863"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="143465" e_stop="143863" e_length="399"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="143465" stop="143863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288501" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGTTGAATAATTCCTACTTAAATTGCAAAAACTGAAAATTACCATCACAAAGATTTGAATTCATCTGATTGCCAAAATGAGAAGTAAAACATACTAATTTGCCAACTAGAATCTCTCCAAAACATTCCTTTAATAGTAATATCGATGGCTGTCTACAAAAATACATAAAAATAAACTTGCCAGGAGACAAGCTGGTCCAAAAGTTGGCACTCAGCTTATCACTGAATGTTTGAGGACTTGTTAAGGATAACACCTTCATATTTGACCTGGAACCACTTCATTGAATCCTCCTTAGTGACCCTGTGCTGAATCCCGACTCGAGACTTGCACCTGCGACGACGGGCAACACGGTAGCCAGGGCGCTCCAATACAACATAGAAATCCATTCCATAAATACC</gDNA_template>
            <first_frame> *  L  N  N  S  Y  L  N  C  K  N  *  K  L  P  S  Q  R  F  E  F  I  *  L  P  K  *  E  V  K  H  T  N  L  P  T  R  I  S  P  K  H  S  F  N  S  N  I  D  G  C  L  Q  K  Y  I  K  I  N  L  P  G  D  K  L  V  Q  K  L  A  L  S  L  S  L  N  V  *  G  L  V  K  D  N  T  F  I  F  D  L  E  P  L  H  *  I  L  L  S  D  P  V  L  N  P  D  S  R  L  A  P  A  T  T  G  N  T  V  A  R  A  L  Q  Y  N  I  E  I  H  S  I  N  T </first_frame>
            <second_frame>  S  *  I  I  P  T  *  I  A  K  T  E  N  Y  H  H  K  D  L  N  S  S  D  C  Q  N  E  K  *  N  I  L  I  C  Q  L  E  S  L  Q  N  I  P  L  I  V  I  S  M  A  V  Y  K  N  T  *  K  *  T  C  Q  E  T  S  W  S  K  S  W  H  S  A  Y  H  *  M  F  E  D  L  L  R  I  T  P  S  Y  L  T  W  N  H  F  I  E  S  S  L  V  T  L  C  *  I  P  T  R  D  L  H  L  R  R  R  A  T  R  *  P  G  R  S  N  T  T  *  K  S  I  P  *  I   </second_frame>
            <third_frame>   V  E  *  F  L  L  K  L  Q  K  L  K  I  T  I  T  K  I  *  I  H  L  I  A  K  M  R  S  K  T  Y  *  F  A  N  *  N  L  S  K  T  F  L  *  *  *  Y  R  W  L  S  T  K  I  H  K  N  K  L  A  R  R  Q  A  G  P  K  V  G  T  Q  L  I  T  E  C  L  R  T  C  *  G  *  H  L  H  I  *  P  G  T  T  S  L  N  P  P  *  *  P  C  A  E  S  R  L  E  T  C  T  C  D  D  G  Q  H  G  S  Q  G  A  P  I  Q  H  R  N  P  F  H  K  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0011O23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="148480" PGL_stop="148928"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="148480" e_stop="148928"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="148480" e_stop="148928" e_length="449"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="148480" stop="148928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312768" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACTGGCAAAGAGAGCTTTTTGAAATTTTCTTTCTCATTCTCTTGCTAGATAGCGGGTCAAAGGCTATTGATTTCGTTCGTTGTTTTTAGGTATTTACTCTTTCAGTTATGCATTGTTTTTTGTGTGCAAATCGGTGATTCTGTATTTTTTTTATATGTTCATGTGCATTGATCATTTCCTTTCAAACAGCGATTTCATAAGCATTTGATATCTGAGAAGTATAAATTCTGTCATTTTTGTTCGAAAAGTTGTTCAGATTTCAGGTGTGAACTGTTTTGAGTAGATGCGGAGAATCAAAGATAAATTATCAACAAGGTTAATGAATGTTTGTGTGGCATCTCTTTGTAAAGCCAAACAATTAGAGAAAGCTGAAATTGTTATAGTTGATGGCATACGAATTGGATTGCAACCAGATGTTGTCACTTACAATACATTGATTGCTGCATA</gDNA_template>
            <first_frame> K  L  A  K  R  A  F  *  N  F  L  S  H  S  L  A  R  *  R  V  K  G  Y  *  F  R  S  L  F  L  G  I  Y  S  F  S  Y  A  L  F  F  V  C  K  S  V  I  L  Y  F  F  Y  M  F  M  C  I  D  H  F  L  S  N  S  D  F  I  S  I  *  Y  L  R  S  I  N  S  V  I  F  V  R  K  V  V  Q  I  S  G  V  N  C  F  E  *  M  R  R  I  K  D  K  L  S  T  R  L  M  N  V  C  V  A  S  L  C  K  A  K  Q  L  E  K  A  E  I  V  I  V  D  G  I  R  I  G  L  Q  P  D  V  V  T  Y  N  T  L  I  A  A   </first_frame>
            <second_frame>  N  W  Q  R  E  L  F  E  I  F  F  L  I  L  L  L  D  S  G  S  K  A  I  D  F  V  R  C  F  *  V  F  T  L  S  V  M  H  C  F  L  C  A  N  R  *  F  C  I  F  F  I  C  S  C  A  L  I  I  S  F  Q  T  A  I  S  *  A  F  D  I  *  E  V  *  I  L  S  F  L  F  E  K  L  F  R  F  Q  V  *  T  V  L  S  R  C  G  E  S  K  I  N  Y  Q  Q  G  *  *  M  F  V  W  H  L  F  V  K  P  N  N  *  R  K  L  K  L  L  *  L  M  A  Y  E  L  D  C  N  Q  M  L  S  L  T  I  H  *  L  L  H  </second_frame>
            <third_frame>   T  G  K  E  S  F  L  K  F  S  F  S  F  S  C  *  I  A  G  Q  R  L  L  I  S  F  V  V  F  R  Y  L  L  F  Q  L  C  I  V  F  C  V  Q  I  G  D  S  V  F  F  L  Y  V  H  V  H  *  S  F  P  F  K  Q  R  F  H  K  H  L  I  S  E  K  Y  K  F  C  H  F  C  S  K  S  C  S  D  F  R  C  E  L  F  *  V  D  A  E  N  Q  R  *  I  I  N  K  V  N  E  C  L  C  G  I  S  L  *  S  Q  T  I  R  E  S  *  N  C  Y  S  *  W  H  T  N  W  I  A  T  R  C  C  H  L  Q  Y  I  D  C  C  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0011O23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="154240" PGL_stop="159860"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="154240" e_stop="154687"/>
            <exon e_start="155760" e_stop="155796"/>
            <exon e_start="158564" e_stop="158800"/>
            <exon e_start="158887" e_stop="158934"/>
            <exon e_start="159227" e_stop="159860"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.507" e_score="0.998"/>
          <exon-intron don_prob="0.930" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.954" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="154240" e_stop="154687" e_length="448"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.507">
            <gDNA_intron_boundary i_start="154688" i_stop="155759" i_length="1072"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="155760" e_stop="155796" e_length="37"/>
          </exon>
          <intron i_serial="2" don_prob="0.930" acc_prob="0.996">
            <gDNA_intron_boundary i_start="155797" i_stop="158563" i_length="2767"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="158564" e_stop="158800" e_length="237"/>
          </exon>
          <intron i_serial="3" don_prob="0.954" acc_prob="0.962">
            <gDNA_intron_boundary i_start="158801" i_stop="158886" i_length="86"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="158887" e_stop="158934" e_length="48"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="158935" i_stop="159226" i_length="292"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="159227" e_stop="159860" e_length="634"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="154240" stop="154687"/>
              <exon start="155760" stop="155796"/>
              <exon start="158564" stop="158800"/>
              <exon start="158887" stop="158934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="154245" stop="154687"/>
              <exon start="155760" stop="155796"/>
              <exon start="158564" stop="158800"/>
              <exon start="158887" stop="158934"/>
              <exon start="159227" stop="159290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="154273" stop="154687"/>
              <exon start="155760" stop="155796"/>
              <exon start="158564" stop="158731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="154274" stop="154687"/>
              <exon start="155760" stop="155796"/>
              <exon start="158564" stop="158775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="154401" stop="154687"/>
              <exon start="155760" stop="155796"/>
              <exon start="158564" stop="158800"/>
              <exon start="158887" stop="158934"/>
              <exon start="159227" stop="159367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="154470" stop="154687"/>
              <exon start="155760" stop="155796"/>
              <exon start="158564" stop="158800"/>
              <exon start="158887" stop="158934"/>
              <exon start="159227" stop="159316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="154471" stop="154683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="154485" stop="154687"/>
              <exon start="155760" stop="155796"/>
              <exon start="158564" stop="158731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="155775" stop="155796"/>
              <exon start="158564" stop="158800"/>
              <exon start="158887" stop="158934"/>
              <exon start="159227" stop="159604"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="158890" stop="158934"/>
              <exon start="159227" stop="159860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="159236" stop="159822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589705" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCTCCAACAACCTTTTATTAGTCGTAGCATATTCCTTATTTTCAAACCCCCACGCGCCTCTCTTGGCCTCCACGCGCCGCCCTGAAGAAGAAGATAAGGGAAAAGGGGGCTGCTTTATGATTGGTGCAGTAACGATAAGTTACTGTAGATAATGGGAGGAGTGACTTCTTCCATCGCTGCTAAGTTCGCCTTCTTCCCACCGACTCCGCCGTCTTACACGGTTGTCCCCGACGACGGCAAGTTTAGCATACCTGAGGTAGCTAGGAGAGATGGAGTAGACTTTTTGAAACTTCGTACTCGCCGTGGAAATGAAATCGTGGCCGTTCATGTGAAGCATCCAAAGGCATCTGCTACTATGCTGTATTCTCATGGTAATGCTGCTGATTTGGGTCAGATGTTTGAGCTCTTTGTTGAATTGAGCCTCCGTCTTCGTGTTAATCTCATGGG : GTATGATTACTCTGGATATGGACAATCAACTGGAAAG : CCATCTGAATGTAATACATACGCGGACATTGATGCAGTATATAAATGCTTAAAGGAGCAATATGAGGTCAAAGATGAACAGTTAATAATCTATGGTCAATCTGTTGGCAGTGGCCCAACTGTTGATCTTGCATCACGAGTACCCAATTTACGAGGTGTTGTTTTACATAGTCCAATATTGTCTGGTGTAAGAGTTTTGTACCCTGTCAAGCGGACATATTGGTTTGACATATACAAG : AACATTGACAAGATTAGTGCAGTGAATTGTCCGGTTCTCGTCATTCAT : GGAACAGCGGATGAAGTTGTTGACTACTCCCATGGGAAACAGCTGTGGGAGCTATGTAACGAAAAATATGAACCTTTGTGGATAAATGGAGGTGGACACTGCAATCTTGAACTTTACCCAGAGTATATCAAACATCTAAAGAAATTTGTTCTTGGTCTTGGCAAACCGAAGCCTGCTGCTAATGGCCCCCAGAAAGCATCAACAGAGTCTGAAAATCAGAGTAAACCTGCCGAAAGTGGTAGTACCACCGACACGTTTGACCTGAAACCTGATCTTCCTGAAATTTCAAGGAACAGTTTGGATAGTCGACTTGAAAAGACTAAGAAGTCAAACAAACCTGAGAAGTCGCGGATGAGCACAGATCGTGTTGACAGGTTTAGGAGAAGAAAGGGCTTAGTGTGGTGATTCCTAAATTACAGAGGGAAAACACCATTAATTAATCACCTGAGGAAGTTAACATGTGTCTGTTTATGCAAACAAGGGATGAGCATTAACTGCAGTTCCTGTGAGCGTAATTGTAGGTGTAAATGGTTGAGTTATCTGTGCCATCAAGATATAAAGTGGTGCGGGAGAAATAAAGTAATTAGTGCATCCCTTTTCCCCCTGTATAATCAAATGTAACATTTTGACATAA</gDNA_template>
            <first_frame> S  S  N  N  L  L  L  V  V  A  Y  S  L  F  S  N  P  H  A  P  L  L  A  S  T  R  R  P  E  E  E  D  K  G  K  G  G  C  F  M  I  G  A  V  T  I  S  Y  C  R  *  W  E  E  *  L  L  P  S  L  L  S  S  P  S  S  H  R  L  R  R  L  T  R  L  S  P  T  T  A  S  L  A  Y  L  R  *  L  G  E  M  E  *  T  F  *  N  F  V  L  A  V  E  M  K  S  W  P  F  M  *  S  I  Q  R  H  L  L  L  C  C  I  L  M  V  M  L  L  I  W  V  R  C  L  S  S  L  L  N  *  A  S  V  F  V  L  I  S  W   : G  M  I  T  L  D  M  D  N  Q  L  E  S :   H  L  N  V  I  H  T  R  T  L  M  Q  Y  I  N  A  *  R  S  N  M  R  S  K  M  N  S  *  *  S  M  V  N  L  L  A  V  A  Q  L  L  I  L  H  H  E  Y  P  I  Y  E  V  L  F  Y  I  V  Q  Y  C  L  V  *  E  F  C  T  L  S  S  G  H  I  G  L  T  Y  T  R :   T  L  T  R  L  V  Q  *  I  V  R  F  S  S  F  M :   E  Q  R  M  K  L  L  T  T  P  M  G  N  S  C  G  S  Y  V  T  K  N  M  N  L  C  G  *  M  E  V  D  T  A  I  L  N  F  T  Q  S  I  S  N  I  *  R  N  L  F  L  V  L  A  N  R  S  L  L  L  M  A  P  R  K  H  Q  Q  S  L  K  I  R  V  N  L  P  K  V  V  V  P  P  T  R  L  T  *  N  L  I  F  L  K  F  Q  G  T  V  W  I  V  D  L  K  R  L  R  S  Q  T  N  L  R  S  R  G  *  A  Q  I  V  L  T  G  L  G  E  E  R  A  *  C  G  D  S  *  I  T  E  G  K  H  H  *  L  I  T  *  G  S  *  H  V  S  V  Y  A  N  K  G  *  A  L  T  A  V  P  V  S  V  I  V  G  V  N  G  *  V  I  C  A  I  K  I  *  S  G  A  G  E  I  K  *  L  V  H  P  F  S  P  C  I  I  K  C  N  I  L  T  * </first_frame>
            <second_frame>  P  P  T  T  F  Y  *  S  *  H  I  P  Y  F  Q  T  P  T  R  L  S  W  P  P  R  A  A  L  K  K  K  I  R  E  K  G  A  A  L  *  L  V  Q  *  R  *  V  T  V  D  N  G  R  S  D  F  F  H  R  C  *  V  R  L  L  P  T  D  S  A  V  L  H  G  C  P  R  R  R  Q  V  *  H  T  *  G  S  *  E  R  W  S  R  L  F  E  T  S  Y  S  P  W  K  *  N  R  G  R  S  C  E  A  S  K  G  I  C  Y  Y  A  V  F  S  W  *  C  C  *  F  G  S  D  V  *  A  L  C  *  I  E  P  P  S  S  C  *  S  H  G  :  V  *  L  L  W  I  W  T  I  N  W  K   : A  I  *  M  *  Y  I  R  G  H  *  C  S  I  *  M  L  K  G  A  I  *  G  Q  R  *  T  V  N  N  L  W  S  I  C  W  Q  W  P  N  C  *  S  C  I  T  S  T  Q  F  T  R  C  C  F  T  *  S  N  I  V  W  C  K  S  F  V  P  C  Q  A  D  I  L  V  *  H  I  Q   : E  H  *  Q  D  *  C  S  E  L  S  G  S  R  H  S   : W  N  S  G  *  S  C  *  L  L  P  W  E  T  A  V  G  A  M  *  R  K  I  *  T  F  V  D  K  W  R  W  T  L  Q  S  *  T  L  P  R  V  Y  Q  T  S  K  E  I  C  S  W  S  W  Q  T  E  A  C  C  *  W  P  P  E  S  I  N  R  V  *  K  S  E  *  T  C  R  K  W  *  Y  H  R  H  V  *  P  E  T  *  S  S  *  N  F  K  E  Q  F  G  *  S  T  *  K  D  *  E  V  K  Q  T  *  E  V  A  D  E  H  R  S  C  *  Q  V  *  E  K  K  G  L  S  V  V  I  P  K  L  Q  R  E  N  T  I  N  *  S  P  E  E  V  N  M  C  L  F  M  Q  T  R  D  E  H  *  L  Q  F  L  *  A  *  L  *  V  *  M  V  E  L  S  V  P  S  R  Y  K  V  V  R  E  K  *  S  N  *  C  I  P  F  P  P  V  *  S  N  V  T  F  *  H   </second_frame>
            <third_frame>   L  Q  Q  P  F  I  S  R  S  I  F  L  I  F  K  P  P  R  A  S  L  G  L  H  A  P  P  *  R  R  R  *  G  K  R  G  L  L  Y  D  W  C  S  N  D  K  L  L  *  I  M  G  G  V  T  S  S  I  A  A  K  F  A  F  F  P  P  T  P  P  S  Y  T  V  V  P  D  D  G  K  F  S  I  P  E  V  A  R  R  D  G  V  D  F  L  K  L  R  T  R  R  G  N  E  I  V  A  V  H  V  K  H  P  K  A  S  A  T  M  L  Y  S  H  G  N  A  A  D  L  G  Q  M  F  E  L  F  V  E  L  S  L  R  L  R  V  N  L  M  G :   Y  D  Y  S  G  Y  G  Q  S  T  G  K  :  P  S  E  C  N  T  Y  A  D  I  D  A  V  Y  K  C  L  K  E  Q  Y  E  V  K  D  E  Q  L  I  I  Y  G  Q  S  V  G  S  G  P  T  V  D  L  A  S  R  V  P  N  L  R  G  V  V  L  H  S  P  I  L  S  G  V  R  V  L  Y  P  V  K  R  T  Y  W  F  D  I  Y  K  :  N  I  D  K  I  S  A  V  N  C  P  V  L  V  I  H  :  G  T  A  D  E  V  V  D  Y  S  H  G  K  Q  L  W  E  L  C  N  E  K  Y  E  P  L  W  I  N  G  G  G  H  C  N  L  E  L  Y  P  E  Y  I  K  H  L  K  K  F  V  L  G  L  G  K  P  K  P  A  A  N  G  P  Q  K  A  S  T  E  S  E  N  Q  S  K  P  A  E  S  G  S  T  T  D  T  F  D  L  K  P  D  L  P  E  I  S  R  N  S  L  D  S  R  L  E  K  T  K  K  S  N  K  P  E  K  S  R  M  S  T  D  R  V  D  R  F  R  R  R  K  G  L  V  W  *  F  L  N  Y  R  G  K  T  P  L  I  N  H  L  R  K  L  T  C  V  C  L  C  K  Q  G  M  S  I  N  C  S  S  C  E  R  N  C  R  C  K  W  L  S  Y  L  C  H  Q  D  I  K  W  C  G  R  N  K  V  I  S  A  S  L  F  P  L  Y  N  Q  M  *  H  F  D  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011O23.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="154389" stop="154687"/>
                    <exon start="155760" stop="155796"/>
                    <exon start="158564" stop="158800"/>
                    <exon start="158887" stop="158934"/>
                    <exon start="159227" stop="159631"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1023</number_coding_nucleotides>
                  <number_encoded_amino_acids>341</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMGGVTSSIAAKFAFFPPTPPSYTVVPDDGKFSIPEVARRDGVDFLKLRTRRGNEIVAVHVKHPKASATMLYSHGNAADLGQMFELFVELSLRLRVNLMGYDYSGYGQSTGKPSECNTYADIDAVYKCLKEQYEVKDEQLIIYGQSVGSGPTVDLASRVPNLRGVVLHSPILSGVRVLYPVKRTYWFDIYKNIDKISAVNCPVLVIHGTADEVVDYSHGKQLWELCNEKYEPLWINGGGHCNLELYPEYIKHLKKFVLGLGKPKPAANGPQKASTESENQSKPAESGSTTDTFDLKPDLPEISRNSLDSRLEKTKKSNKPEKSRMSTDRVDRFRRRKGLVW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011O23.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="159632" stop="159847"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLNYRGKTPLINHLRKLTCVCLCKQGMSINCSSCERNCRCKWLSYLCHQDIKWCGRNKVISASLFPLYNQM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="154275" e_stop="154916"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="154275" e_stop="154916" e_length="642"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="154275" stop="154916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="154471" stop="154683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264492" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTATTTTCAAACCCCCACGCGCCTCTCTTGGCCTCCACGCGCCGCCCTGAAGAAGAAGATAAGGGAAAAGGGGGCTGCTTTATGATTGGTGCAGTAACGATAAGTTACTGTAGATAATGGGAGGAGTGACTTCTTCCATCGCTGCTAAGTTCGCCTTCTTCCCACCGACTCCGCCGTCTTACACGGTTGTCCCCGACGACGGCAAGTTTAGCATACCTGAGGTAGCTAGGAGAGATGGAGTAGACTTTTTGAAACTTCGTACTCGCCGTGGAAATGAAATCGTGGCCGTTCATGTGAAGCATCCAAAGGCATCTGCTACTATGCTGTATTCTCATGGTAATGCTGCTGATTTGGGTCAGATGTTTGAGCTCTTTGTTGAATTGAGCCTCCGTCTTCGTGTTAATCTCATGGGGTAATTTAATTAAGCTTCCCTTTTAATTTCCACAATTTTATTTCCTAGTTTCTCAATTTTGTTTCCGTTATCTGATTCTGAGCTAAAGCTTATCTTTTTTTTTTCTCTTAAGTCCTAATTCTGTTTTAATTTTTTTTTTTGTTCTTTTTCTTGAATCTAGCAATTGGAAAGACACCTTATGCAGTAATTGAGATTTTGTAACTTTCATATTTGGATCACTTTTTTTTTT</gDNA_template>
            <first_frame> L  I  F  K  P  P  R  A  S  L  G  L  H  A  P  P  *  R  R  R  *  G  K  R  G  L  L  Y  D  W  C  S  N  D  K  L  L  *  I  M  G  G  V  T  S  S  I  A  A  K  F  A  F  F  P  P  T  P  P  S  Y  T  V  V  P  D  D  G  K  F  S  I  P  E  V  A  R  R  D  G  V  D  F  L  K  L  R  T  R  R  G  N  E  I  V  A  V  H  V  K  H  P  K  A  S  A  T  M  L  Y  S  H  G  N  A  A  D  L  G  Q  M  F  E  L  F  V  E  L  S  L  R  L  R  V  N  L  M  G  *  F  N  *  A  S  L  L  I  S  T  I  L  F  P  S  F  S  I  L  F  P  L  S  D  S  E  L  K  L  I  F  F  F  S  L  K  S  *  F  C  F  N  F  F  F  C  S  F  S  *  I  *  Q  L  E  R  H  L  M  Q  *  L  R  F  C  N  F  H  I  W  I  T  F  F  F </first_frame>
            <second_frame>  L  F  S  N  P  H  A  P  L  L  A  S  T  R  R  P  E  E  E  D  K  G  K  G  G  C  F  M  I  G  A  V  T  I  S  Y  C  R  *  W  E  E  *  L  L  P  S  L  L  S  S  P  S  S  H  R  L  R  R  L  T  R  L  S  P  T  T  A  S  L  A  Y  L  R  *  L  G  E  M  E  *  T  F  *  N  F  V  L  A  V  E  M  K  S  W  P  F  M  *  S  I  Q  R  H  L  L  L  C  C  I  L  M  V  M  L  L  I  W  V  R  C  L  S  S  L  L  N  *  A  S  V  F  V  L  I  S  W  G  N  L  I  K  L  P  F  *  F  P  Q  F  Y  F  L  V  S  Q  F  C  F  R  Y  L  I  L  S  *  S  L  S  F  F  F  L  L  S  P  N  S  V  L  I  F  F  F  V  L  F  L  E  S  S  N  W  K  D  T  L  C  S  N  *  D  F  V  T  F  I  F  G  S  L  F  F   </second_frame>
            <third_frame>   Y  F  Q  T  P  T  R  L  S  W  P  P  R  A  A  L  K  K  K  I  R  E  K  G  A  A  L  *  L  V  Q  *  R  *  V  T  V  D  N  G  R  S  D  F  F  H  R  C  *  V  R  L  L  P  T  D  S  A  V  L  H  G  C  P  R  R  R  Q  V  *  H  T  *  G  S  *  E  R  W  S  R  L  F  E  T  S  Y  S  P  W  K  *  N  R  G  R  S  C  E  A  S  K  G  I  C  Y  Y  A  V  F  S  W  *  C  C  *  F  G  S  D  V  *  A  L  C  *  I  E  P  P  S  S  C  *  S  H  G  V  I  *  L  S  F  P  F  N  F  H  N  F  I  S  *  F  L  N  F  V  S  V  I  *  F  *  A  K  A  Y  L  F  F  F  S  *  V  L  I  L  F  *  F  F  F  L  F  F  F  L  N  L  A  I  G  K  T  P  Y  A  V  I  E  I  L  *  L  S  Y  L  D  H  F  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0011O23.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="154389" stop="154691"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMGGVTSSIAAKFAFFPPTPPSYTVVPDDGKFSIPEVARRDGVDFLKLRTRRGNEIVAVHVKHPKASATMLYSHGNAADLGQMFELFVELSLRLRVNLMG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="158827" PGL_stop="158062"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="158827" e_stop="158062"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="158827" e_stop="158062" e_length="766"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="158827" stop="158126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="158390" stop="158062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398130" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACAGATAACCACTGAGAGTGTTTTACCTTGTATATGTCAAACCAATATGTCCGCTTGACAGGGTACAAAACTCTTACACCAGACAATATTGGACTATGTAAAACAACACCTCGTAAATTGGGTACTCGTGATGCAAGATCAACAGTTGGGCCACTGCCAACAGATTGACCATAGATTATTAACTGTTCATCTTTGACCTCATATTGCTCCTTTAAGCATTTATATACTGCATCAATGTCCGCGTATGTATTACATTCAGATGGCTGTTTCAGAGAAAGGATGATTTCATTATAATTTAAACAACAAACAGCAACAACGGAATAGACCCATATGAATACCAAATGAGTTCCTAGAGCAAGCAATGAATGAAAAATCCAAGATTAAGAACTGAAACTTTCTTATATACCTGTGTCAGGTCTCACACATATTTGTTAATAACATTAAGCAGAAAACTATATAAAGACAGATTAAGATGTTTTGACGCACAAAGCAACATTCTAATTAAAGTTTGACCAGTGTTGTCAAAAGTGCACTTAGCCCTGAAGCGAGGCTCAAAACGTGTTGAGGCGCTTTGCCTCGCTTAATCTTCATCAAGGTTCTAAGACATACTCTTCCTAGTCAATAAGCCTCTTGTGAAGAGGCGACACTAAACAATCAATACTTTACTTTACGTGAATTGTCTTTAACTTTTTTGTTCATATATATCCTTCATTCATGCTTATAATTATTAGCTTGAACTAATCATATATATTTGAAATTTTCTCA</gDNA_template>
            <first_frame> Y  R  *  P  L  R  V  F  Y  L  V  Y  V  K  P  I  C  P  L  D  R  V  Q  N  S  Y  T  R  Q  Y  W  T  M  *  N  N  T  S  *  I  G  Y  S  *  C  K  I  N  S  W  A  T  A  N  R  L  T  I  D  Y  *  L  F  I  F  D  L  I  L  L  L  *  A  F  I  Y  C  I  N  V  R  V  C  I  T  F  R  W  L  F  Q  R  K  D  D  F  I  I  I  *  T  T  N  S  N  N  G  I  D  P  Y  E  Y  Q  M  S  S  *  S  K  Q  *  M  K  N  P  R  L  R  T  E  T  F  L  Y  T  C  V  R  S  H  T  Y  L  L  I  T  L  S  R  K  L  Y  K  D  R  L  R  C  F  D  A  Q  S  N  I  L  I  K  V  *  P  V  L  S  K  V  H  L  A  L  K  R  G  S  K  R  V  E  A  L  C  L  A  *  S  S  S  R  F  *  D  I  L  F  L  V  N  K  P  L  V  K  R  R  H  *  T  I  N  T  L  L  Y  V  N  C  L  *  L  F  C  S  Y  I  S  F  I  H  A  Y  N  Y  *  L  E  L  I  I  Y  I  *  N  F  L  </first_frame>
            <second_frame>  T  D  N  H  *  E  C  F  T  L  Y  M  S  N  Q  Y  V  R  L  T  G  Y  K  T  L  T  P  D  N  I  G  L  C  K  T  T  P  R  K  L  G  T  R  D  A  R  S  T  V  G  P  L  P  T  D  *  P  *  I  I  N  C  S  S  L  T  S  Y  C  S  F  K  H  L  Y  T  A  S  M  S  A  Y  V  L  H  S  D  G  C  F  R  E  R  M  I  S  L  *  F  K  Q  Q  T  A  T  T  E  *  T  H  M  N  T  K  *  V  P  R  A  S  N  E  *  K  I  Q  D  *  E  L  K  L  S  Y  I  P  V  S  G  L  T  H  I  C  *  *  H  *  A  E  N  Y  I  K  T  D  *  D  V  L  T  H  K  A  T  F  *  L  K  F  D  Q  C  C  Q  K  C  T  *  P  *  S  E  A  Q  N  V  L  R  R  F  A  S  L  N  L  H  Q  G  S  K  T  Y  S  S  *  S  I  S  L  L  *  R  G  D  T  K  Q  S  I  L  Y  F  T  *  I  V  F  N  F  F  V  H  I  Y  P  S  F  M  L  I  I  I  S  L  N  *  S  Y  I  F  E  I  F  S </second_frame>
            <third_frame>   Q  I  T  T  E  S  V  L  P  C  I  C  Q  T  N  M  S  A  *  Q  G  T  K  L  L  H  Q  T  I  L  D  Y  V  K  Q  H  L  V  N  W  V  L  V  M  Q  D  Q  Q  L  G  H  C  Q  Q  I  D  H  R  L  L  T  V  H  L  *  P  H  I  A  P  L  S  I  Y  I  L  H  Q  C  P  R  M  Y  Y  I  Q  M  A  V  S  E  K  G  *  F  H  Y  N  L  N  N  K  Q  Q  Q  R  N  R  P  I  *  I  P  N  E  F  L  E  Q  A  M  N  E  K  S  K  I  K  N  *  N  F  L  I  Y  L  C  Q  V  S  H  I  F  V  N  N  I  K  Q  K  T  I  *  R  Q  I  K  M  F  *  R  T  K  Q  H  S  N  *  S  L  T  S  V  V  K  S  A  L  S  P  E  A  R  L  K  T  C  *  G  A  L  P  R  L  I  F  I  K  V  L  R  H  T  L  P  S  Q  *  A  S  C  E  E  A  T  L  N  N  Q  Y  F  T  L  R  E  L  S  L  T  F  L  F  I  Y  I  L  H  S  C  L  *  L  L  A  *  T  N  H  I  Y  L  K  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0011O23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 470 chains have been computed
$ 
$ memory statistics:
$ 1140384 bytes spliced alignments in total
$ 156 spliced alignments have been stored
$ 7310 bytes was the average size of a spliced alignment
$ 34824 bytes predicted gene locations in total
$ 21 predicted gene locations have been stored
$ 1658 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 546 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:14:09
-->
