<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:18:46"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E547080" ref_strand="+" ref_description="SGN-E547080 [TUS-70-M11](-)">
      <seq>attaaatgatatcggggaaaatagcgtaggaacaatttgtgacccttcttctggtgcacctaattacagcttcacacctgatctgtgcccaaaggatactatcccaattgaagatctgaaatatgttctgtcaaaagtcacatgttatgaaggaaattcttcaggaaattgcgcgggtgaaggaagattcattccacaggcctcatctgtgatattattcgcttatactcaatctattcaagacctgatagaaatattccctgatttgctgagcctaagtcagtgctccaaagtaaaacaagcattcgccaacattttacagtaccagtgcaggccatttagacgttcagcacgagtactatggtcatctatgttgtcactctccattctcatgatacttttagtactaacattgatagtaaaagctcaccaagaaactggaagaagcttcgatacatgctccattactcctaaaaaagtcgaaacaataccaaaaaacttgccagattgcagtaattctgcaggcaatgtacagaatatgtagatggtttgcatttttttttctttttttgtagttatagatggaagtatacagtatacccattcccctgaagtcgtaagacgccaaaaaaatgggggtttaagttatagaaaatagaaatagagaattcttactaaacttgtacttgatatattgttcttgtcatgtacacgacttaataactgtgtacatatttgacatgaacagtgattgatgggtactagaggctaactttggccttgtaaatttgctcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="2485" stop="995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2185" g_stop="2062" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2061" i_stop="1966" i_length="96">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1965" g_stop="1296" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="795" r_length="671" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="796" polyA_stop="806"/>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E547080" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2185" e_stop="2062"/>
          <exon e_start="1965" e_stop="1296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAATGATATCGGGGAAAATAGCGTAGGAACAATTTGTGACCCCTTCTCTGGTGCACCTAATTACAGCTTCACACCTGATCTGTGCCCAAAGGATACTATCCCAATTGAAGATCTGAAATATGTAAGTTACAAGCTTTAACATACTGAACATATATAAGGATCTTTATGTCTCATGTCCAGTGAAAATTTGGAATTTTTTTTTAATGTTTGCCTGTAGGTTCTGTCAAAAGTCACATGTTATGAAGGAAATTCTTCAGGAAATTGCGCGGGTGAAGGAAGATTCATTCCACAGGCCTCATCTGTGATATTATTCGCTTATACTCAATCTATTCAAGACCTGATAGAAATATTCCCTGATTTGCTGAGCCTAAGTCAATGCTCCAAAGTAAAACAAGCATTCGCCAACATTTTACAGTACCAGTGCAGGCCATTTAGACGTTCAGCACGAGTACTATGGTCATCTATGTTGTCACTCTCCATTCTCATGATACTTTTAGTACTAACATTGATAGTAAAAGCTCACCAAGAAACTGGAAGAAGCTTTGATACATGCTCCATTACTCCTAAAAAAGTTGAAACAATACCAAAAACCTTGCCAGATTGCAGTAATTCTGCAGACAATGTACAGAAAATGTAGATGCTTTGCATTTTTTTTTCTTTTTTTGTAGTTATAGATGGAAGTATACAGTATACCCATTCCCCTGAAGTCGTAAGACGCCAAAAAAATGGGGG-TTAAGTTATAGAAAATAGAAATAGAGAATTCTTACTAAACTTGTACTTGATATATTGTTCTTGTCATGTACACGACTTAATAACTGTGTACATATTTGACATGAACAGTGATTGATGGATACTAGAGGCTAACTTTGGCCTTGTAAATTTGCTCA</genome_strand>
        <mrna_strand>ATTAAATGATATCGGGGAAAATAGCGTAGGAACAATTTGTGACCCTTCTTCTGGTGCACCTAATTACAGCTTCACACCTGATCTGTGCCCAAAGGATACTATCCCAATTGAAGATCTGAAATAT................................................................................................GTTCTGTCAAAAGTCACATGTTATGAAGGAAATTCTTCAGGAAATTGCGCGGGTGAAGGAAGATTCATTCCACAGGCCTCATCTGTGATATTATTCGCTTATACTCAATCTATTCAAGACCTGATAGAAATATTCCCTGATTTGCTGAGCCTAAGTCAGTGCTCCAAAGTAAAACAAGCATTCGCCAACATTTTACAGTACCAGTGCAGGCCATTTAGACGTTCAGCACGAGTACTATGGTCATCTATGTTGTCACTCTCCATTCTCATGATACTTTTAGTACTAACATTGATAGTAAAAGCTCACCAAGAAACTGGAAGAAGCTTCGATACATGCTCCATTACTCCTAAAAAAGTCGAAACAATACCAAAAAACTTGCCAGATTGCAGTAATTCTGCAGGCAATGTACAGAATATGTAGATGGTTTGCATTTTTTTTTCTTTTTTTGTAGTTATAGATGGAAGTATACAGTATACCCATTCCCCTGAAGTCGTAAGACGCCAAAAAAATGGGGGTTTAAGTTATAGAAAATAGAAATAGAGAATTCTTACTAAACTTGTACTTGATATATTGTTCTTGTCATGTACACGACTTAATAACTGTGTACATATTTGACATGAACAGTGATTGATGGGTACTAGAGGCTAACTTTGGCCTTGTAAATTTGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E394520" ref_strand="+" ref_description="SGN-E394520 [TUS-14-B17]">
      <seq>ctgtcacacaatgcatcattatcttttagaaagtattttcatgtgtataaaactagagattctgtgaaatttgataatcttatatgagttataagctattacacgatttctactttttctagctgtcttcttgcttttgattttcctgtatagtcagttccttctaacgtatgtttaaatcgatcatcaatgtcatggttagactaatggaatgctgctttggctcagttttactcatttggcactggcctcttggatttataataataatcctctgctgctggattttgacaactctgagttgggtgctgactggttttgatttctttttccatacctttgcagatgacacttgctcagctttgaaggactttcaacagaatcctcagaacaatagcttgcaaattatacttccctgtgcaaatcctggaacttctgacaaaacgttggagcagattggcgccacggttcataatttcattactcaggtactgttatctataatatacaagaaacaaggataggagcttacatatattcttagcattatctttgtgttttcgatttccagcttaattctaagctgagagaggtacaaggattaggattaaatgatatcggggaaaatagcgtaggaacaatttgtgaccccttctctggtgcacctaattacagcttcacacctgatctgtgcccaaaggatactatcccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="3262" stop="1778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2962" g_stop="2698" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2697" i_stop="2612" i_length="86">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.140" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2611" g_stop="2540" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="337" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2539" i_stop="2455" i_length="85">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2454" g_stop="2078" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="714" r_length="377" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E394520" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E394520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2962" e_stop="2698"/>
          <exon e_start="2611" e_stop="2540"/>
          <exon e_start="2454" e_stop="2078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTCACACAATGCATCATTATCTTTTAGAAAGTATTTTCATGTGTATAAAACTAGAGATTCTGTGAAATTTGATAATCTTATATGAGTTATAAGCTATTACACGATTTCTACTTTTTCTAGCTGTCTTCTTGCTTTTGATTTTCCTGTATAGTCAGTTCCTTCTAACGTATGTTTAAATCGATCATCAATGTCATGGTTAGACTAATGGAATGCTGCTTTGGCTCAGTTTTACTCATTTGGCACTGGCCTCTTGGATTTATAATGTAAGTAAGATTTTGATACTTCTGTTTGACATAGAATCGCTTTTATATTCTCAAAGCCTAATTAAACAGCTCTTATTAACTACTAGAATAATCCTCTGCTGCTGGATTTTGACAACTCTGAGTTGGGTGCTGACTGGTTTTGATTTCTTTTTCCATACGTGAGCACAAATTCTTCTCTTCCTCTCAGTAATTCAGCTTAATTTTTCATTTTATACGCCGTAACTTTAGCAAATGCTGATGCAGCTTTGCAGATGACACTTGCTCAGCTTTGAAGGACTTTCAACAGAATCCTCAGAACAATAGCTTGCAAATTATACTTCCCTGTGCAAATCCTGGAACTTCTGACAAAACGTTGGAGCAGATTGGCGCCACGGTTCATAATTTCATTACTCAGGTACTGTTATCTATAATATACAAGAAACAAGGATAGGAGCTTACATATATTCTTAGCATTATCTTTGTGTTTTCGATTTCCAGCTTAATTCTAAGCTGAGAGAGGTACAAGGATTAGGATTAAATGATATCGGGGAAAATAGCGTAGGAACAATTTGTGACCCCTTCTCTGGTGCACCTAATTACAGCTTCACACCTGATCTGTGCCCAAAGGATACTATCCCAAT</genome_strand>
        <mrna_strand>CTGTCACACAATGCATCATTATCTTTTAGAAAGTATTTTCATGTGTATAAAACTAGAGATTCTGTGAAATTTGATAATCTTATATGAGTTATAAGCTATTACACGATTTCTACTTTTTCTAGCTGTCTTCTTGCTTTTGATTTTCCTGTATAGTCAGTTCCTTCTAACGTATGTTTAAATCGATCATCAATGTCATGGTTAGACTAATGGAATGCTGCTTTGGCTCAGTTTTACTCATTTGGCACTGGCCTCTTGGATTTATAAT......................................................................................AATAATCCTCTGCTGCTGGATTTTGACAACTCTGAGTTGGGTGCTGACTGGTTTTGATTTCTTTTTCCATAC.....................................................................................CTTTGCAGATGACACTTGCTCAGCTTTGAAGGACTTTCAACAGAATCCTCAGAACAATAGCTTGCAAATTATACTTCCCTGTGCAAATCCTGGAACTTCTGACAAAACGTTGGAGCAGATTGGCGCCACGGTTCATAATTTCATTACTCAGGTACTGTTATCTATAATATACAAGAAACAAGGATAGGAGCTTACATATATTCTTAGCATTATCTTTGTGTTTTCGATTTCCAGCTTAATTCTAAGCTGAGAGAGGTACAAGGATTAGGATTAAATGATATCGGGGAAAATAGCGTAGGAACAATTTGTGACCCCTTCTCTGGTGCACCTAATTACAGCTTCACACCTGATCTGTGCCCAAAGGATACTATCCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202327" ref_strand="+" ref_description="SGN-E202327 [cLEC-6-D17]">
      <seq>tgtcacacaatgcatcattatcttttagaaagtattttcatgtgtataaaactagagattctgtgaaatttgataatcttatatgagttataagctattacacgatttctactttttctagctgtcttcttgcttttgattttcctgtatagtcagttccttctaacgtatgtttaaatcgatcatcaatgtcatggttagactaatggaatgctgctttggctcagttttactcatttggcactggcctcttggatttataataataatcctctgctgctggattttgacaactctgagttgggtgctgactggttttgatttctttttccatacctttgcagatgacacttgctcagctttgaaggactttcaacagaatcctcagaacaatagcttgcaaattatacttccctgtgcaaatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="3261" stop="2064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2961" g_stop="2698" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2697" i_stop="2612" i_length="86">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.140" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2611" g_stop="2540" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="336" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="2539" i_stop="2455" i_length="85">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.875" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2454" g_stop="2364" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="427" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E202327" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2961" e_stop="2698"/>
          <exon e_start="2611" e_stop="2540"/>
          <exon e_start="2454" e_stop="2364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCACACAATGCATCATTATCTTTTAGAAAGTATTTTCATGTGTATAAAACTAGAGATTCTGTGAAATTTGATAATCTTATATGAGTTATAAGCTATTACACGATTTCTACTTTTTCTAGCTGTCTTCTTGCTTTTGATTTTCCTGTATAGTCAGTTCCTTCTAACGTATGTTTAAATCGATCATCAATGTCATGGTTAGACTAATGGAATGCTGCTTTGGCTCAGTTTTACTCATTTGGCACTGGCCTCTTGGATTTATAATGTAAGTAAGATTTTGATACTTCTGTTTGACATAGAATCGCTTTTATATTCTCAAAGCCTAATTAAACAGCTCTTATTAACTACTAGAATAATCCTCTGCTGCTGGATTTTGACAACTCTGAGTTGGGTGCTGACTGGTTTTGATTTCTTTTTCCATACGTGAGCACAAATTCTTCTCTTCCTCTCAGTAATTCAGCTTAATTTTTCATTTTATACGCCGTAACTTTAGCAAATGCTGATGCAGCTTTGCAGATGACACTTGCTCAGCTTTGAAGGACTTTCAACAGAATCCTCAGAACAATAGCTTGCAAATTATACTTCCCTGTGCAAATCCT</genome_strand>
        <mrna_strand>TGTCACACAATGCATCATTATCTTTTAGAAAGTATTTTCATGTGTATAAAACTAGAGATTCTGTGAAATTTGATAATCTTATATGAGTTATAAGCTATTACACGATTTCTACTTTTTCTAGCTGTCTTCTTGCTTTTGATTTTCCTGTATAGTCAGTTCCTTCTAACGTATGTTTAAATCGATCATCAATGTCATGGTTAGACTAATGGAATGCTGCTTTGGCTCAGTTTTACTCATTTGGCACTGGCCTCTTGGATTTATAAT......................................................................................AATAATCCTCTGCTGCTGGATTTTGACAACTCTGAGTTGGGTGCTGACTGGTTTTGATTTCTTTTTCCATAC.....................................................................................CTTTGCAGATGACACTTGCTCAGCTTTGAAGGACTTTCAACAGAATCCTCAGAACAATAGCTTGCAAATTATACTTCCCTGTGCAAATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E547081" ref_strand="+" ref_description="SGN-E547081 [TUS-70-M11]">
      <seq>cctcgtgccgaattcggcacgaggcacacaagaataaccaaaagtttcttactagccacaagctatcctaaccttaatgatcaagtcaaggaatgaatttttctcttcttttataccacttttactttttatgttttgcctcaaaaatattcaacatcatactatatcatcatgccaaaattacatggaggggttcttcttcctttcattcttttattaatttccactaatataattgcccagaaatctcttgtatttggcttcattgatcgtgatgaaatttcaaaaagacctgatcctctcagacattttaagtcatataatgggagttataatcttggtgacaagcactattgggcttctgcgggtttcacaggcatacatggatatgcaattgctgggatttggttgttagttggtttggggttttggaagttacatgatttttaagtattttcatgccaattcaagtatttcaatgattgaacattcgccttcttattatattttgatgttctcgctggttgttctgtttacaattcttgccatagttgcaagctgcgttgctttggctgcaaacaatggttttgaacatagagtagaaaagcttcgccgaacaatttttgatgctggtggtgatacatgtcaatccatcagaagggtagtaaaggttttgctaagtatgcaaactcttttaagccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="4978" stop="2941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4677" g_stop="4340" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="360" r_length="335" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4339" i_stop="4244" i_length="96">
            <donor d_prob="0.841" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4243" g_stop="4056" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="549" r_length="189" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4055" i_stop="3395" i_length="661">
            <donor d_prob="0.758" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3394" g_stop="3241" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="703" r_length="154" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E547081" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4677" e_stop="4340"/>
          <exon e_start="4243" e_stop="4056"/>
          <exon e_start="3394" e_stop="3241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAAGAATAACCAAAAGTTTCTTACTAGCCACAAGCTATCCTAACCTTAATGATCAAGTCAAGGAATGAATTTTTCTCTTCTTTTATACCACTTTTACTTTTTATGTTTTGCCTCAAAAATATTCAACATCATACTATATCATCATCATGCCAAAATTACATGGAAGGGTTCTTCTTCCTTTCATTCTTTTATTAATTTCCACTAATATAATTGCCCAGAAATCTCTTGTATTTGGCTTCATTGATCGCGATCAAATTTCAAAAAGACCTGATCCTCTCAGACATTTTAAGTCATATAATGGGAGTTATAATCTTGGTGACAAGCACTATTGGGCTGTAAGTTTTTATTTTTTATGATGAGATTAAATTTTTTTAAAAAAGGGAATTAGCTGCTGATTTGTTTTTTTTTTCTTTTCTTTGTTTGTTTATCAGTCTGCGGGTTTCACAGGCATACATGGATATGCAATTGCTGGGATTTGGTTGTTAGTTGGTTT-GGGTTTTGGAAGTTACATGATTTTTAAGTATTTTCATGCCAATTCAACTACTTCAATGATTGAACATTCGCCTTCGTATTATATTTTGATGTTCTCGCTGGTTGTTCTGTTTACAATTCTTGCCATGTAAGTGCTTTTGCTTGCTTAATTTTTGGTAACACTACTATTTAAATAAACATGTGCTCTGTTCCTATAGGAAATACATTAAGCAATCATGTCATATCAATCAACAAATAAGTAAAAAGCGTATAATCTCACAAAATAGTACTTTGGGCATTCCCTTATTTTTACAAGGCATAATACATAAGTTAAGCGCCATGATAACTCTATTACCTTTAACTTTGCGTGTGCACAAGTAGATATTTAAAATTATAAAAATTTGAAAAAATAGACACATTCATCCTACATAGCACCCGACATTGCAATTTTGCATCCTACGTGTATATGCCATGTAGGACACATGTGTTTACTTGTGCACAATCAAAGTTGGACGACACAATTATCCGCTGAAAACCAAGTTAACGGTCATATTTATATATTATGGTTTTTCATAACAGTAAGCTTTCAAAGAGGATTATGATTTAGAACTCATAAACTAAAAAAGAATCTTAGCTCCACCTCTAAATCAAACACATTTTATTGTCCCTATCTTATATTGATGAGGATTAGTGACCTATATATAGGAATAAAGCAATGGAGTACTACAATATTTGATATGTCGTTTATGGCTAAGTTTGATAAGAAAAGACTGACTGATGTGTCTACTACTTTTTGTTTTGTTTGGAAGAGTTGCAAGCTGCGTTGCTTTGGCTGCAAACAATGGTTTTGAACATAGAGTAGAAAGGCTTCGCCGAACAATTTTTGATGCTGGTGGTGATACATGTCAATCCATCAGAAGGGTAATAAAGGTTTTGCTAAGTATGCAAACTCTTTTAAGCCCT</genome_strand>
        <mrna_strand>ACACAAGAATAACCAAAAGTTTCTTACTAGCCACAAGCTATCCTAACCTTAATGATCAAGTCAAGGAATGAATTTTTCTCTTCTTTTATACCACTTTTACTTTTTATGTTTTGCCTCAAAAATATTCAACATCATAC--TAT-ATCATCATGCCAAAATTACATGGAGGGGTTCTTCTTCCTTTCATTCTTTTATTAATTTCCACTAATATAATTGCCCAGAAATCTCTTGTATTTGGCTTCATTGATCGTGATGAAATTTCAAAAAGACCTGATCCTCTCAGACATTTTAAGTCATATAATGGGAGTTATAATCTTGGTGACAAGCACTATTGGGCT................................................................................................TCTGCGGGTTTCACAGGCATACATGGATATGCAATTGCTGGGATTTGGTTGTTAGTTGGTTTGGGGTTTTGGAAGTTACATGATTTTTAAGTATTTTCATGCCAATTCAAGTATTTCAATGATTGAACATTCGCCTTCTTATTATATTTTGATGTTCTCGCTGGTTGTTCTGTTTACAATTCTTGCCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGCAAGCTGCGTTGCTTTGGCTGCAAACAATGGTTTTGAACATAGAGTAGAAAAGCTTCGCCGAACAATTTTTGATGCTGGTGGTGATACATGTCAATCCATCAGAAGGGTAGTAAAGGTTTTGCTAAGTATGCAAACTCTTTTAAGCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E360835" ref_strand="+" ref_description="SGN-E360835 [cLPP-7-D4]">
      <seq>gtgccgaattcggcacgaggcacacaagaataaccaaaagtttcttactagccacaagctatcctaaccttaatgatcaagtcaaggaatgaatttttctcttcttttataccacttttactttttatgttttgcctcaaaaatattcaacatcatactatatcatcatgccaaaattacatggaggggttcttcttcctttcattcttttattaatttccactaatataattgcccagaaatctcttgtatttggcttcattgatcgtgatgaaatttcaaaaagacctgatcctctcagacattttaagtcatataatgggagttataatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="4978" stop="4062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4677" g_stop="4362" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="334" r_length="313" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E360835" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4677" e_stop="4362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAAGAATAACCAAAAGTTTCTTACTAGCCACAAGCTATCCTAACCTTAATGATCAAGTCAAGGAATGAATTTTTCTCTTCTTTTATACCACTTTTACTTTTTATGTTTTGCCTCAAAAATATTCAACATCATACTATATCATCATCATGCCAAAATTACATGGAAGGGTTCTTCTTCCTTTCATTCTTTTATTAATTTCCACTAATATAATTGCCCAGAAATCTCTTGTATTTGGCTTCATTGATCGCGATCAAATTTCAAAAAGACCTGATCCTCTCAGACATTTTAAGTCATATAATGGGAGTTATAATCT</genome_strand>
        <mrna_strand>ACACAAGAATAACCAAAAGTTTCTTACTAGCCACAAGCTATCCTAACCTTAATGATCAAGTCAAGGAATGAATTTTTCTCTTCTTTTATACCACTTTTACTTTTTATGTTTTGCCTCAAAAATATTCAACATCATAC--TAT-ATCATCATGCCAAAATTACATGGAGGGGTTCTTCTTCCTTTCATTCTTTTATTAATTTCCACTAATATAATTGCCCAGAAATCTCTTGTATTTGGCTTCATTGATCGTGATGAAATTTCAAAAAGACCTGATCCTCTCAGACATTTTAAGTCATATAATGGGAGTTATAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347032" ref_strand="+" ref_description="SGN-E347032 [cTOF-25-O16]">
      <seq>acaaataaagggggaaggggaaaaataccgagagggtatttaattgtgttgtgtttgagagggatctttcttctttatactgatattcagatctttctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgttgagcaagccatctctgagtggtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="16458" stop="20515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16758" g_stop="16917" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16918" i_stop="19258" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19259" g_stop="19340" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="242" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19341" i_stop="19463" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19464" g_stop="19496" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="275" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19497" i_stop="19604" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19605" g_stop="19726" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="397" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19727" i_stop="20125" i_length="399">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20126" g_stop="20215" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="487" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E347032" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347032" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16758" e_stop="16917"/>
          <exon e_start="19259" e_stop="19340"/>
          <exon e_start="19464" e_stop="19496"/>
          <exon e_start="19605" e_stop="19726"/>
          <exon e_start="20126" e_stop="20215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATAAAGGGGGAAGGGGAAAAATACCGAGAGGGTATTTAATTGTGTTGTGTTTGAGAGGGATCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTAT</genome_strand>
        <mrna_strand>ACAAATAAAGGGGGAAGGGGAAAAATACCGAGAGGGTATTTAATTGTGTTGTGTTTGAGAGGGATCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280074" ref_strand="-" ref_description="SGN-E280074 [cLEL-7-D22](-)">
      <seq>gcacgagggaaggggaaaaataccgagagggtatttaattgtgttgtgtttgagagggatctttcttctttatactgatattcagatctttctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="16465" stop="20024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16763" g_stop="16917" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16918" i_stop="19258" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19259" g_stop="19340" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="237" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19341" i_stop="19463" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19464" g_stop="19496" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="270" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19497" i_stop="19604" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19605" g_stop="19724" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="390" r_length="120" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E280074" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280074" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16763" e_stop="16917"/>
          <exon e_start="19259" e_stop="19340"/>
          <exon e_start="19464" e_stop="19496"/>
          <exon e_start="19605" e_stop="19724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGGGGAAGGGGAAAAATACCGAGAGGGTATTTAATTGTGTTGTGTTTGAGAGGGATCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATA</genome_strand>
        <mrna_strand>GCACGAGGGAAGGGGAAAAATACCGAGAGGGTATTTAATTGTGTTGTGTTTGAGAGGGATCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E200157" ref_strand="+" ref_description="SGN-E200157 [cLEB-7-P6]">
      <seq>gcacgagggaaggggaaaaataccgagagggtatttaattgtgttgtgtttgagagggatctttcttctttatactgatattcagatctttctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccaaattccgcagtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="16465" stop="19991"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16763" g_stop="16917" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16918" i_stop="19258" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19259" g_stop="19340" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="237" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19341" i_stop="19463" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19464" g_stop="19496" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="270" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19497" i_stop="19604" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19605" g_stop="19691" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="357" r_length="87" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E200157" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16763" e_stop="16917"/>
          <exon e_start="19259" e_stop="19340"/>
          <exon e_start="19464" e_stop="19496"/>
          <exon e_start="19605" e_stop="19691"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGGGGAAGGGGAAAAATACCGAGAGGGTATTTAATTGTGTTGTGTTTGAGAGGGATCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATG</genome_strand>
        <mrna_strand>GCACGAGGGAAGGGGAAAAATACCGAGAGGGTATTTAATTGTGTTGTGTTTGAGAGGGATCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAAATTCCGCAGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287972" ref_strand="+" ref_description="SGN-E287972 [cLES-7-E6]">
      <seq>gggaaaaataccgagagggtatttaattgtgttgtgtttgagagggatctttcttctttatactgatattcagatctttctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtttatgttggtgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgttgagcaagccatctctgagtggtattccactgctggtgctgggaaacaaaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="16475" stop="20545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16775" g_stop="16917" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16918" i_stop="19258" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19259" g_stop="19340" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="225" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19341" i_stop="19463" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19464" g_stop="19496" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="258" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19497" i_stop="19604" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19605" g_stop="19726" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="380" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19727" i_stop="20125" i_length="399">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20126" g_stop="20245" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="500" r_length="120" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E287972" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16775" e_stop="16917"/>
          <exon e_start="19259" e_stop="19340"/>
          <exon e_start="19464" e_stop="19496"/>
          <exon e_start="19605" e_stop="19726"/>
          <exon e_start="20126" e_stop="20245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAAAATACCGAGAGGGTATTTAATTGTGTTGTGTTTGAGAGGGATCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGA</genome_strand>
        <mrna_strand>GGGAAAAATACCGAGAGGGTATTTAATTGTGTTGTGTTTGAGAGGGATCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGGTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E724780" ref_strand="+" ref_description="SGN-E724780 [FC25AE12]">
      <seq>aatcggccgaattgatttaattgtgtcctgtttgagagggatctttcttctttatactgatattcagatctttctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgttgagcaagccatctctgagtggtattccactgctggtgctgggaaacaaaattgacaagcctgattccctttccaaacaggctttgactgagcagatgggattgaaatcaataactgatagagaagtgtgctgctatatgatctcgtgcaagaattccaccaatattgactcagtcattgattggcttgttaagcactcgaaatcaaagagctaaagatgactttaactttttctttttttttgtagtggtgctgatctgtatgataaatttgctgaggctattggttttttctgctggtttctccagagttctcttgtactgtaaattaagttattttgtctattgagtgagttgttacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="16485" stop="21172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16779" g_stop="16917" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16918" i_stop="19258" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19259" g_stop="19340" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="219" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19341" i_stop="19463" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19464" g_stop="19496" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="252" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19497" i_stop="19604" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19605" g_stop="19726" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="374" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19727" i_stop="20125" i_length="399">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20126" g_stop="20287" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="536" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20288" i_stop="20606" i_length="319">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20607" g_stop="20872" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="537" r_stop="802" r_length="266" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E724780" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16779" e_stop="16917"/>
          <exon e_start="19259" e_stop="19340"/>
          <exon e_start="19464" e_stop="19496"/>
          <exon e_start="19605" e_stop="19726"/>
          <exon e_start="20126" e_stop="20287"/>
          <exon e_start="20607" e_stop="20872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATACCGAGAGGGTATTTAATTGTGTTGTGTTTGAGAGGGATCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGATGTAAGTGCGGAGTATTAAGCTAGCGATTGGTGGCCTTTTGGCCTTAGTTTACTGTATGGTTGTGGTTAGTGGAAGGGAGGTAAAAGTTTTATCTTTCACTTTAGGTCCAATTCCATAAAACTGGAAAGGAAGGAAAAGAAATTTACTTCTTTCACATGGTATAAAAAGCTTTTGGAAGGAATGCAAATACCTCTGCATGTCCTTCTCATATCTTAGCGGCAGAGAAGATTGGATCATCCCTCCTGCTATCCCTCCTATTTTTATAGCATTAAATATATCTAGGTGCTCTTATCTTAAAGAACATTATGTTGTTTTGCAGGGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTACATG</genome_strand>
        <mrna_strand>AATCGGCCGA-ATTG-ATTTAATTGTGTCCTGTTTGAGAGGGATCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGAT...............................................................................................................................................................................................................................................................................................................................GGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E613208" ref_strand="+" ref_description="SGN-E613208 [62979]">
      <seq>cttcttcatactgatattcttattcagatctctctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcgggaaaaacatctcttgtaaatgttattgctactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgactaaaggaaatgtcacaataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagagatactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgctgagcaagccatctctgagtggtattccattgctggtgctgggaaacaagattgacaagcctgattccctgtccaaacaggctttgactgaccagatgggattgaaatcaattactgatagagaagtgtgctgctatatgatctcctgcaagaattccaccaacattgactcagtcattgattggcttgttaagcactcgaaatccaagagctaaagatgactaaaacttttttgtagtggtgctgatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="16520" stop="21059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16821" g_stop="16917" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.887"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16918" i_stop="19258" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19259" g_stop="19340" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="179" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19341" i_stop="19463" i_length="123">
            <donor d_prob="0.949" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19464" g_stop="19496" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="212" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19497" i_stop="19604" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19605" g_stop="19726" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="334" r_length="122" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19727" i_stop="20125" i_length="399">
            <donor d_prob="0.873" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20126" g_stop="20287" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="496" r_length="162" r_score="0.969"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20288" i_stop="20606" i_length="319">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20607" g_stop="20761" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="650" r_length="154" r_score="0.890"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E613208" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E613208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16821" e_stop="16917"/>
          <exon e_start="19259" e_stop="19340"/>
          <exon e_start="19464" e_stop="19496"/>
          <exon e_start="19605" e_stop="19726"/>
          <exon e_start="20126" e_stop="20287"/>
          <exon e_start="20607" e_stop="20761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGATGTAAGTGCGGAGTATTAAGCTAGCGATTGGTGGCCTTTTGGCCTTAGTTTACTGTATGGTTGTGGTTAGTGGAAGGGAGGTAAAAGTTTTATCTTTCACTTTAGGTCCAATTCCATAAAACTGGAAAGGAAGGAAAAGAAATTTACTTCTTTCACATGGTATAAAAAGCTTTTGGAAGGAATGCAAATACCTCTGCATGTCCTTCTCATATCTTAGCGGCAGAGAAGATTGGATCATCCCTCCTGCTATCCCTCCTATTTTTATAGCATTAAATATATCTAGGTGCTCTTATCTTAAAGAACATTATGTTGTTTTGCAGGGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTG</genome_strand>
        <mrna_strand>CTTCTTCATACTGATATTCTTATTCAGATCTCTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCGGGAAAAACATCTCTTGTAAATGTTATTGCT...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACTAAAGGAAATGTCACAATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGAGATACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGCTGAGCAAGCCATCTCTGAGTGGTATTCCATTGCTGGTGCTGGGAAACAAGATTGACAAGCCTGATTCCCTGTCCAAACAGGCTTTGACTGACCAGAT...............................................................................................................................................................................................................................................................................................................................GGGATTGAAATCAATTACTGATAGAGAAGTGTGCTGCTATATGATCTCCTGCAAGAATTCCACCAACATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCCAAGAGCTAAAGATGACTAAAACTTTTT-TGTAGTGGTGCTGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E720306" ref_strand="+" ref_description="SGN-E720306 [FC10BG01]">
      <seq>tcggccgaattgatactgatattcagacctttaacttttacgattcttcgcatcagccatgggtatctggcaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacttgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgttgagcaagccatctctgagtggtattccactgctggtgctgggaaacaaaattgacaagcctgattccctttccaaacaggctttgactgagcagatgggattgaaatcaataactgatagagaagtgtgctgctatatgatctcgtgcaagaattccaccaatattgactcagtcattgattggcttgttaagcactcgaaatcaaagagctaaagatgactttaactttttctttttttttgtagtggtgctgatctgtatgataaatttgctgaggctattggttttttctgctggtttctccagagttctcttgtactgtaaattaagttattttgtctattgagtgagttgttccnnnnnaanaaaannnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="16531" stop="21169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16822" g_stop="16917" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16918" i_stop="19258" i_length="2341">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19259" g_stop="19340" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="178" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19341" i_stop="19463" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19464" g_stop="19496" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="211" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19497" i_stop="19604" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19605" g_stop="19726" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="333" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19727" i_stop="20125" i_length="399">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20126" g_stop="20287" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="495" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20288" i_stop="20606" i_length="319">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20607" g_stop="20871" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="760" r_length="265" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="774" polyA_stop="807"/>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E720306" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16822" e_stop="16917"/>
          <exon e_start="19259" e_stop="19340"/>
          <exon e_start="19464" e_stop="19496"/>
          <exon e_start="19605" e_stop="19726"/>
          <exon e_start="20126" e_stop="20287"/>
          <exon e_start="20607" e_stop="20871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGATGTAAGTGCGGAGTATTAAGCTAGCGATTGGTGGCCTTTTGGCCTTAGTTTACTGTATGGTTGTGGTTAGTGGAAGGGAGGTAAAAGTTTTATCTTTCACTTTAGGTCCAATTCCATAAAACTGGAAAGGAAGGAAAAGAAATTTACTTCTTTCACATGGTATAAAAAGCTTTTGGAAGGAATGCAAATACCTCTGCATGTCCTTCTCATATCTTAGCGGCAGAGAAGATTGGATCATCCCTCCTGCTATCCCTCCTATTTTTATAGCATTAAATATATCTAGGTGCTCTTATCTTAAAGAACATTATGTTGTTTTGCAGGGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTACAT</genome_strand>
        <mrna_strand>TCGGCCGAATTGATACTGATATTCAGACCTTTAACTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGCAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACTTGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGAT...............................................................................................................................................................................................................................................................................................................................GGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTCCNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E547043" ref_strand="+" ref_description="SGN-E547043 [TUS-70-L13]">
      <seq>tttcttctttatactgatattcagatctctctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagagatactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgctgagcaagccatctctgagtggtattccattgctggtgctgggaaacaaaattgacaagcctgattccctgtccaaacaggctttgactgaccagatgggattgaaatcaataactgatagagaagtgtgctgctatatgatctcgtgcaagaattccaccaatattgactcagtcattgattggcttgttaagcactcgaaatcaaagagctaatgatgactataactttttttttttgtagtggtgctgatttgtatgataaatttgcgaggctattggttttttctgctggtttctccagagttctcttgtactgtnaattaaagtattttgtctattgagtgagttgntacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="16524" stop="21170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16824" g_stop="16917" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16918" i_stop="19258" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19259" g_stop="19340" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="176" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19341" i_stop="19463" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19464" g_stop="19496" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="209" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19497" i_stop="19604" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19605" g_stop="19726" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="331" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19727" i_stop="20125" i_length="399">
            <donor d_prob="0.873" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20126" g_stop="20287" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="493" r_length="162" r_score="0.975"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20288" i_stop="20606" i_length="319">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20607" g_stop="20876" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="758" r_length="265" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E547043" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16824" e_stop="16917"/>
          <exon e_start="19259" e_stop="19340"/>
          <exon e_start="19464" e_stop="19496"/>
          <exon e_start="19605" e_stop="19726"/>
          <exon e_start="20126" e_stop="20287"/>
          <exon e_start="20607" e_stop="20876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGATGTAAGTGCGGAGTATTAAGCTAGCGATTGGTGGCCTTTTGGCCTTAGTTTACTGTATGGTTGTGGTTAGTGGAAGGGAGGTAAAAGTTTTATCTTTCACTTTAGGTCCAATTCCATAAAACTGGAAAGGAAGGAAAAGAAATTTACTTCTTTCACATGGTATAAAAAGCTTTTGGAAGGAATGCAAATACCTCTGCATGTCCTTCTCATATCTTAGCGGCAGAGAAGATTGGATCATCCCTCCTGCTATCCCTCCTATTTTTATAGCATTAAATATATCTAGGTGCTCTTATCTTAAAGAACATTATGTTGTTTTGCAGGGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTACATGTTTT</genome_strand>
        <mrna_strand>TTTCTTCTTTATACTGATATTCAGATCTCTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGAGATACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGCTGAGCAAGCCATCTCTGAGTGGTATTCCATTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTGTCCAAACAGGCTTTGACTGACCAGAT...............................................................................................................................................................................................................................................................................................................................GGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAATGATGACTATAAC---TT-TTTTTTTTTGTAGTGGTGCTGATTTGTATGATAAATTTGC-GAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTNAATTAAAGTATTTTGTCTATTGAGTGAGTTGNTACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E547125" ref_strand="+" ref_description="SGN-E547125 [TUS-70-N13]">
      <seq>tttcttctttatactgatattcagatctctctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagagatactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgctgagcaagccatctctgagtggtattccattgctggtgctgggaaacaaaattgacaagcctgattccctgtccaaacaggctttgactgaccagatgggattgaaatcaataactgatagagaagtgtgctgctatatgatctcgtgcaagaattccaccaatattgactcagtcattgattggcttgttaagcactcgaaatcaaagagctaatgatgactataactttttttttttgtagtggtgctgatttgtatgataaatttgcgagggctattggttttttctgctggtttctccagagttctcttgtactgtaaattaagttattttgtctatttgagtgagttgttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="16524" stop="21169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16824" g_stop="16917" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16918" i_stop="19258" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19259" g_stop="19340" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="176" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19341" i_stop="19463" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19464" g_stop="19496" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="209" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19497" i_stop="19604" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19605" g_stop="19726" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="331" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19727" i_stop="20125" i_length="399">
            <donor d_prob="0.873" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20126" g_stop="20287" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="493" r_length="162" r_score="0.975"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20288" i_stop="20606" i_length="319">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20607" g_stop="20869" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="753" r_length="260" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E547125" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16824" e_stop="16917"/>
          <exon e_start="19259" e_stop="19340"/>
          <exon e_start="19464" e_stop="19496"/>
          <exon e_start="19605" e_stop="19726"/>
          <exon e_start="20126" e_stop="20287"/>
          <exon e_start="20607" e_stop="20869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGATGTAAGTGCGGAGTATTAAGCTAGCGATTGGTGGCCTTTTGGCCTTAGTTTACTGTATGGTTGTGGTTAGTGGAAGGGAGGTAAAAGTTTTATCTTTCACTTTAGGTCCAATTCCATAAAACTGGAAAGGAAGGAAAAGAAATTTACTTCTTTCACATGGTATAAAAAGCTTTTGGAAGGAATGCAAATACCTCTGCATGTCCTTCTCATATCTTAGCGGCAGAGAAGATTGGATCATCCCTCCTGCTATCCCTCCTATTTTTATAGCATTAAATATATCTAGGTGCTCTTATCTTAAAGAACATTATGTTGTTTTGCAGGGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTA-TTGAGTGAGTTGTTAC</genome_strand>
        <mrna_strand>TTTCTTCTTTATACTGATATTCAGATCTCTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGAGATACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGCTGAGCAAGCCATCTCTGAGTGGTATTCCATTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTGTCCAAACAGGCTTTGACTGACCAGAT...............................................................................................................................................................................................................................................................................................................................GGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAATGATGACTATAAC---TT-TTTTTTTTTGTAGTGGTGCTGATTTGTATGATAAATTTGCGAGGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTTGAGTGAGTTGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549484" ref_strand="+" ref_description="SGN-E549484 [TUS-70-N13](-)">
      <seq>tttcttctttatactgatattcagatctctctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagagatactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgctgagcaagccatctctgagtggtattccattgctggtgctgggaaacaaaattgacaagcctgattccctgtccaaacaggctttgactgaccagatgggattgaaatcaataactgatagagaagtgtgctgctatatgatctcgtgcaagaattccaccaatattgactcagtcattgattggcttgttaagcactcgaaatcaaagagctaatgatgactataactttttttttttgtagtggtgctgatttgtatgataaatttgcgaggctattggttttttctgctggtttctccagagttctcttgtactgtaaattaagttattttgtctattgagtgagttgttacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="16524" stop="21170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16824" g_stop="16917" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16918" i_stop="19258" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19259" g_stop="19340" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="176" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19341" i_stop="19463" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19464" g_stop="19496" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="209" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19497" i_stop="19604" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19605" g_stop="19726" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="331" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19727" i_stop="20125" i_length="399">
            <donor d_prob="0.873" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20126" g_stop="20287" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="493" r_length="162" r_score="0.975"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20288" i_stop="20606" i_length="319">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20607" g_stop="20869" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="751" r_length="258" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="752" polyA_stop="761"/>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E549484" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16824" e_stop="16917"/>
          <exon e_start="19259" e_stop="19340"/>
          <exon e_start="19464" e_stop="19496"/>
          <exon e_start="19605" e_stop="19726"/>
          <exon e_start="20126" e_stop="20287"/>
          <exon e_start="20607" e_stop="20869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGATGTAAGTGCGGAGTATTAAGCTAGCGATTGGTGGCCTTTTGGCCTTAGTTTACTGTATGGTTGTGGTTAGTGGAAGGGAGGTAAAAGTTTTATCTTTCACTTTAGGTCCAATTCCATAAAACTGGAAAGGAAGGAAAAGAAATTTACTTCTTTCACATGGTATAAAAAGCTTTTGGAAGGAATGCAAATACCTCTGCATGTCCTTCTCATATCTTAGCGGCAGAGAAGATTGGATCATCCCTCCTGCTATCCCTCCTATTTTTATAGCATTAAATATATCTAGGTGCTCTTATCTTAAAGAACATTATGTTGTTTTGCAGGGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTAC</genome_strand>
        <mrna_strand>TTTCTTCTTTATACTGATATTCAGATCTCTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGAGATACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGCTGAGCAAGCCATCTCTGAGTGGTATTCCATTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTGTCCAAACAGGCTTTGACTGACCAGAT...............................................................................................................................................................................................................................................................................................................................GGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAATGATGACTATAAC---TT-TTTTTTTTTGTAGTGGTGCTGATTTGTATGATAAATTTGC-GAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E363474" ref_strand="+" ref_description="SGN-E363474 [cLPP-4-D9]">
      <seq>tttcttctttatactgatattcagatctctctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagagatactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgctgagcaagccatctctgagtggtattccattgctggtgctgggaaacaaaattgacaagcctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="16524" stop="20554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16824" g_stop="16917" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16918" i_stop="19258" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19259" g_stop="19340" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="176" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19341" i_stop="19463" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19464" g_stop="19496" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="209" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19497" i_stop="19604" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19605" g_stop="19726" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="331" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19727" i_stop="20125" i_length="399">
            <donor d_prob="0.873" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20126" g_stop="20254" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="460" r_length="129" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E363474" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16824" e_stop="16917"/>
          <exon e_start="19259" e_stop="19340"/>
          <exon e_start="19464" e_stop="19496"/>
          <exon e_start="19605" e_stop="19726"/>
          <exon e_start="20126" e_stop="20254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGA</genome_strand>
        <mrna_strand>TTTCTTCTTTATACTGATATTCAGATCTCTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGAGATACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGCTGAGCAAGCCATCTCTGAGTGGTATTCCATTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E360708" ref_strand="+" ref_description="SGN-E360708 [cLPP-7-L18]">
      <seq>ttcttctttatactgatattcagatctctctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagagatactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgctgagcaagccatctctgagtggtattccattgctggtgctgggaaacaaaattgacaagcctgattccctgtccaaacaggctttgactgaccagatgggattgaaatcaataactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="16525" stop="20927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16825" g_stop="16917" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16918" i_stop="19258" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19259" g_stop="19340" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="175" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19341" i_stop="19463" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19464" g_stop="19496" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="208" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19497" i_stop="19604" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19605" g_stop="19726" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="330" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19727" i_stop="20125" i_length="399">
            <donor d_prob="0.873" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20126" g_stop="20287" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="492" r_length="162" r_score="0.975"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20288" i_stop="20606" i_length="319">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20607" g_stop="20627" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="513" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E360708" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16825" e_stop="16917"/>
          <exon e_start="19259" e_stop="19340"/>
          <exon e_start="19464" e_stop="19496"/>
          <exon e_start="19605" e_stop="19726"/>
          <exon e_start="20126" e_stop="20287"/>
          <exon e_start="20607" e_stop="20627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGATGTAAGTGCGGAGTATTAAGCTAGCGATTGGTGGCCTTTTGGCCTTAGTTTACTGTATGGTTGTGGTTAGTGGAAGGGAGGTAAAAGTTTTATCTTTCACTTTAGGTCCAATTCCATAAAACTGGAAAGGAAGGAAAAGAAATTTACTTCTTTCACATGGTATAAAAAGCTTTTGGAAGGAATGCAAATACCTCTGCATGTCCTTCTCATATCTTAGCGGCAGAGAAGATTGGATCATCCCTCCTGCTATCCCTCCTATTTTTATAGCATTAAATATATCTAGGTGCTCTTATCTTAAAGAACATTATGTTGTTTTGCAGGGGATTGAAATCAATAACTGA</genome_strand>
        <mrna_strand>TTCTTCTTTATACTGATATTCAGATCTCTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGAGATACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGCTGAGCAAGCCATCTCTGAGTGGTATTCCATTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTGTCCAAACAGGCTTTGACTGACCAGAT...............................................................................................................................................................................................................................................................................................................................GGGATTGAAATCAATAACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E547042" ref_strand="+" ref_description="SGN-E547042 [TUS-70-L13](-)">
      <seq>gatattcagatctctctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagagatactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgctgagcaagccatctctgagtggtattccattgctggtgctgggaaacaaaattgacaagcctgattccctgtccaaacaggctttgactgaccagatgggattgaaatcaataactgatagagaagtgtgctgctatatgatctcgtgcaagaattccaccaatattgactcagtcattgattggcttgttaagcactcgaaatcaaagagctaatgatgactataactttttttttttgtagtggtgctgatttgtatgataaatttgcgaggctattggttttttctgctggtttctccagagttctcttgtactgtaaattaagttattttgtctattgagtgagttgttacaaaaaaaaaaaaaaaaaactcgaggggggcccggtcccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="16539" stop="21170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16839" g_stop="16917" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16918" i_stop="19258" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19259" g_stop="19340" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="161" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19341" i_stop="19463" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19464" g_stop="19496" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="194" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19497" i_stop="19604" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19605" g_stop="19726" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="316" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19727" i_stop="20125" i_length="399">
            <donor d_prob="0.873" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20126" g_stop="20287" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="478" r_length="162" r_score="0.975"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20288" i_stop="20606" i_length="319">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20607" g_stop="20869" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="736" r_length="258" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="737" polyA_stop="755"/>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E547042" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16839" e_stop="16917"/>
          <exon e_start="19259" e_stop="19340"/>
          <exon e_start="19464" e_stop="19496"/>
          <exon e_start="19605" e_stop="19726"/>
          <exon e_start="20126" e_stop="20287"/>
          <exon e_start="20607" e_stop="20869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGATGTAAGTGCGGAGTATTAAGCTAGCGATTGGTGGCCTTTTGGCCTTAGTTTACTGTATGGTTGTGGTTAGTGGAAGGGAGGTAAAAGTTTTATCTTTCACTTTAGGTCCAATTCCATAAAACTGGAAAGGAAGGAAAAGAAATTTACTTCTTTCACATGGTATAAAAAGCTTTTGGAAGGAATGCAAATACCTCTGCATGTCCTTCTCATATCTTAGCGGCAGAGAAGATTGGATCATCCCTCCTGCTATCCCTCCTATTTTTATAGCATTAAATATATCTAGGTGCTCTTATCTTAAAGAACATTATGTTGTTTTGCAGGGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTAC</genome_strand>
        <mrna_strand>GATATTCAGATCTCTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGAGATACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGCTGAGCAAGCCATCTCTGAGTGGTATTCCATTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTGTCCAAACAGGCTTTGACTGACCAGAT...............................................................................................................................................................................................................................................................................................................................GGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAATGATGACTATAAC---TT-TTTTTTTTTGTAGTGGTGCTGATTTGTATGATAAATTTGC-GAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307942" ref_strand="+" ref_description="SGN-E307942 [cLEZ-7-J8]">
      <seq>gatattcaaatctttctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="16539" stop="20457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16839" g_stop="16917" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16918" i_stop="19258" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19259" g_stop="19340" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="161" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19341" i_stop="19463" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19464" g_stop="19496" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="194" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19497" i_stop="19604" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19605" g_stop="19726" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="316" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19727" i_stop="20125" i_length="399">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20126" g_stop="20157" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="348" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E307942" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16839" e_stop="16917"/>
          <exon e_start="19259" e_stop="19340"/>
          <exon e_start="19464" e_stop="19496"/>
          <exon e_start="19605" e_stop="19726"/>
          <exon e_start="20126" e_stop="20157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACC</genome_strand>
        <mrna_strand>GATATTCAAATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E722943" ref_strand="+" ref_description="SGN-E722943 [FC18DC09]">
      <seq>gggcgattggcggccaatcggccgaattgatactgatattcagatctttctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgttgagcaagccatctctgagtggtattccactgctggtgctgggaaacaaaattgacaagcctgattccctttccaaacaggctttgactgagcagatgggattgaaatcaataactgatagagaagtgtgctgctatatgatctcgtgcaagaattccaccaatattgactcagtcattgattggcttgttaagcactcgaaatcaaagagctaaagatgactttaactttttctttttttttgtagtggtgctgatctgtatgataaatttgctgaggctattggttttttctgctggtttctccagagttctcttgtactgtaaattaagttattttgtctattgagtgagttgttacatgttttttttcttgccatttttcgtctcaactctctctaattgtgtttgcaattcctcttatactttttacttgtctgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="16531" stop="21251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16848" g_stop="16917" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="113" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16918" i_stop="19258" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19259" g_stop="19340" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="195" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19341" i_stop="19463" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19464" g_stop="19496" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="228" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19497" i_stop="19604" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19605" g_stop="19726" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="350" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19727" i_stop="20125" i_length="399">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20126" g_stop="20287" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="512" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20288" i_stop="20606" i_length="319">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20607" g_stop="20951" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="857" r_length="345" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E722943" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16848" e_stop="16917"/>
          <exon e_start="19259" e_stop="19340"/>
          <exon e_start="19464" e_stop="19496"/>
          <exon e_start="19605" e_stop="19726"/>
          <exon e_start="20126" e_stop="20287"/>
          <exon e_start="20607" e_stop="20951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGATGTAAGTGCGGAGTATTAAGCTAGCGATTGGTGGCCTTTTGGCCTTAGTTTACTGTATGGTTGTGGTTAGTGGAAGGGAGGTAAAAGTTTTATCTTTCACTTTAGGTCCAATTCCATAAAACTGGAAAGGAAGGAAAAGAAATTTACTTCTTTCACATGGTATAAAAAGCTTTTGGAAGGAATGCAAATACCTCTGCATGTCCTTCTCATATCTTAGCGGCAGAGAAGATTGGATCATCCCTCCTGCTATCCCTCCTATTTTTATAGCATTAAATATATCTAGGTGCTCTTATCTTAAAGAACATTATGTTGTTTTGCAGGGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTACATGTTTTTTTTCTTGCCATTTTTCGTCTCAACTCTCTCTAATTGTGTTTGCAATTCCTCTTATACTTTTTACTTGTCTGCTG</genome_strand>
        <mrna_strand>ATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGAT...............................................................................................................................................................................................................................................................................................................................GGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTACATGTTTTTTTTCTTGCCATTTTTCGTCTCAACTCTCTCTAATTGTGTTTGCAATTCCTCTTATACTTTTTACTTGTCTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E723448" ref_strand="+" ref_description="SGN-E723448 [FC20CA09]">
      <seq>gcggccaaatcggccgaattgatactgatattcagacctttctcttttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcaaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgttgagcaagccatctctgagtggtattccactgctggtgctgggaaacaaaattgacaagcctgattccctttccaaacaggctttgactgagcaaatgggattgaaatcaataactgatagagaagtgtgctgctatatgatctcgtgcaagaattccaccaatattgactcagtcattgattggcttgttaagcactcgaaatcaaagagctaaagatgactttaactttttctttttttttgtagtggtgctgatctgtatgataaatttgctgaggctattggttttttctgctggtttctccagagttctcttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="16531" stop="21129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16848" g_stop="16917" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="105" r_length="70" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16918" i_stop="19258" i_length="2341">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19259" g_stop="19340" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="187" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19341" i_stop="19463" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19464" g_stop="19496" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="220" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19497" i_stop="19604" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19605" g_stop="19726" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="342" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19727" i_stop="20125" i_length="399">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20126" g_stop="20287" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="504" r_length="162" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20288" i_stop="20606" i_length="319">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20607" g_stop="20829" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="727" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E723448" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16848" e_stop="16917"/>
          <exon e_start="19259" e_stop="19340"/>
          <exon e_start="19464" e_stop="19496"/>
          <exon e_start="19605" e_stop="19726"/>
          <exon e_start="20126" e_stop="20287"/>
          <exon e_start="20607" e_stop="20829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGATGTAAGTGCGGAGTATTAAGCTAGCGATTGGTGGCCTTTTGGCCTTAGTTTACTGTATGGTTGTGGTTAGTGGAAGGGAGGTAAAAGTTTTATCTTTCACTTTAGGTCCAATTCCATAAAACTGGAAAGGAAGGAAAAGAAATTTACTTCTTTCACATGGTATAAAAAGCTTTTGGAAGGAATGCAAATACCTCTGCATGTCCTTCTCATATCTTAGCGGCAGAGAAGATTGGATCATCCCTCCTGCTATCCCTCCTATTTTTATAGCATTAAATATATCTAGGTGCTCTTATCTTAAAGAACATTATGTTGTTTTGCAGGGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTA</genome_strand>
        <mrna_strand>ACCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAAAT...............................................................................................................................................................................................................................................................................................................................GGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E591240" ref_strand="-" ref_description="SGN-E591240 [44948]">
      <seq>tttacgattcttcgcatcagccatgggtatctgggaagcttttctcaattggcttcgaagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcgggaaaaacatctcttgtaaatgttattgctactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgactaaaggaaatgtcacaataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagagatactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgctgagcaagccatctctgagtggtattccattgctggtgctgggaaacaagattgacaagcctgattccctgtccaaacaggctttgactgaccagatgggattgaaatcaattactgatagagaagtgtgctgctatatgatctcctgcaagaattccaccaacattgactcagtcattgattggcttgttaagcactcgaaatcaaagagctaaagatgactaaaacttttttgtagtggtgctgatttgtatgataaatttgcgaggctattggttttttctgctggtttctccagagttctcttgtactgtaaattaaattattttgtctcttgagtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="16558" stop="21162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16858" g_stop="16917" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16918" i_stop="19258" i_length="2341">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.879" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19259" g_stop="19340" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="142" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19341" i_stop="19463" i_length="123">
            <donor d_prob="0.949" d_score="0.96"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19464" g_stop="19496" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="175" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19497" i_stop="19604" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19605" g_stop="19726" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="297" r_length="122" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19727" i_stop="20125" i_length="399">
            <donor d_prob="0.873" d_score="0.96"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20126" g_stop="20287" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="459" r_length="162" r_score="0.969"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20288" i_stop="20606" i_length="319">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20607" g_stop="20862" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="705" r_length="246" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E591240" ref_strand="-">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591240" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16858" e_stop="16917"/>
          <exon e_start="19259" e_stop="19340"/>
          <exon e_start="19464" e_stop="19496"/>
          <exon e_start="19605" e_stop="19726"/>
          <exon e_start="20126" e_stop="20287"/>
          <exon e_start="20607" e_stop="20862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAGGTATATATATTTTTTTGTTACCATGAACTTTGCAAACTATAATTCGTGAAGGGCTAGGATGAAAGACGAAAAACATTATCAAGTTAAATAGGATCCATATAACCTATATGAATTAAATTGAGATTGATGCTTAGTTGATGAATTTTTCTATTATGCATACTCTTTGTCATAACGTGCCAATTATTGAGTATTTTGTGTGCTGTCGATTGGTTAATTACATATGGGGATGTTGATATGCAGTTGTTGGCTTATGGATAGGTTAATTTGTCATGTGGCGTACGATCTATCTTCATTTTTTTCCTATTTGGATGGTCTGTTGAACGGTTGGTTAATGACTCTGTTGTCTGTGTCTTCCTATTTGTTTTGTTTGAGATTTCTGGAATTTCGAATAAAAAGATGGGAGTTTTGCATCTTCTTTCTTAGTCAAACGAGTCTTTGATTTGTTGGGACAGTACTGTGTGTCTGCATTTTATCATGAAACTTGGGTAGTAGTGGTCATCGTAGTCCCACATATCTTACAAATTTCTATCACTCACACTTTCATATGCTGGAAAAGAAATTGGAATGTGAAATCAATGGCAGCAAACATTCAGTCTGGTTATCAGATGTGGGCATAACAAGGTTTTGGGTTTTTAGGCTACCAGATGTTGAACTGTCTACAAAAGGACTTCTTTTTTCCAACTCTATCCAGCGTGTCTCTTATCTTGTCCCATTTGGTCACTTCTGAAAGAGTTATGACTTATGGGGCGGAAGTTTCTGGTCATTCAACCTCTATTCTACTTCACTACTACACCTCCCAACAACACGACAACGCACATTAAAAGATTGTTCTTTTAGGTAGTGGTAGTTTGAAATGACAAAAATCTGTTTTATTTGAGCATTTTAGGATAAACCTCTCAACCGACACTAGTAGTTCTCATCCACACTCAGAGGTGTAGCCAGGGTTAGGAGTCGGAACTGGTAGTGCTCATCCACATTCAGAGGCGGAGTTGGTGTTCTAAATTTTAGGATAAAAATATTGCAAAACATGCTTTCTTTCTTCTTCTTCTTTTTTGAAAAGAAACTTTTGTTGATAGTGAGGTTTGAACCCACAACTCTAGCGTGGAAGGCATTTCCATAGACCATTCCTTACCACTGAGCCGTCAATTAGCTTTGTTAGGGGTTTAAAAGTTATATATATCTATCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATCTTTAATTTTCTAATATAAATACATGATCTACGGAAAAATTACTTGATTTGTCTGTACCCCCAAACCCCCACTTAGGCCCCTGTCCACACGCGCTAGAAGGATTTGACTAGAAAGTCGTCTTGCTGATGCGATAGTCCTTGGGTATGACCACATTCGTTTCGACAATAGGATAGGGAAAGAAAATCTATAGACGAGACCAACTGGGACCGAACCTTTCTATCTTCTTCTTTCACTTTTTGTTCCCGCCTGCCGAGGACCTGTGTTTCAATTCATGTTGTACTGATTGTAAATCTTTTCCTACCTGTGTTTCAATTCGTGTTGTACTGATTGTAAATCTTTTGCTAGCTATAAGAAGTGATTTCATGTCTTTCCTTCTAAGGATCCTGTGCCAGCTGAATCGTGTTTCTTTCCCTAATATGGTCGCTCATTTTTTTTCTCTTTGTTCATGAGAAGGTCTTGATAACTTATTCCTTTTGTCATGGTATCCTTTTGGTTTATTTACTTTCCAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGCTTGAGCACTTTAGATCTTGTAGTTACTTTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGATGTAAGTGCGGAGTATTAAGCTAGCGATTGGTGGCCTTTTGGCCTTAGTTTACTGTATGGTTGTGGTTAGTGGAAGGGAGGTAAAAGTTTTATCTTTCACTTTAGGTCCAATTCCATAAAACTGGAAAGGAAGGAAAAGAAATTTACTTCTTTCACATGGTATAAAAAGCTTTTGGAAGGAATGCAAATACCTCTGCATGTCCTTCTCATATCTTAGCGGCAGAGAAGATTGGATCATCCCTCCTGCTATCCCTCCTATTTTTATAGCATTAAATATATCTAGGTGCTCTTATCTTAAAGAACATTATGTTGTTTTGCAGGGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAG</genome_strand>
        <mrna_strand>TTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCGGGAAAAACATCTCTTGTAAATGTTATTGCT...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACTAAAGGAAATGTCACAATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGAGATACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGCTGAGCAAGCCATCTCTGAGTGGTATTCCATTGCTGGTGCTGGGAAACAAGATTGACAAGCCTGATTCCCTGTCCAAACAGGCTTTGACTGACCAGAT...............................................................................................................................................................................................................................................................................................................................GGGATTGAAATCAATTACTGATAGAGAAGTGTGCTGCTATATGATCTCCTGCAAGAATTCCACCAACATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGAC--TAA----AAC---TTTTTTGTAGTGGTGCTGATTTGTATGATAAATTTGC-GAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAATTATTTTGTCTCTTGAGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243240" ref_strand="+" ref_description="SGN-E243240 [cLEE-2-O8]">
      <seq>cagatttggctggacattttccacctaaatccttgtagcttttgacttttctaagtttcttgcaaaaaagtgaattgtgttccatcggagtcattgttgtagacagactctttgcctgttcaatgattgaccacctcgtatcagaaaaatcaactctatatatgtggttggaacaccttttaatatttttgaatggactagacactgactgatgaaagtgaaaccattgatgcttccccttgacctttcatcatatacaaaactttttcctgaggttcaactgggtgattccagaaatgacgaccaaaaataacttatatttgacagattttacaatgtcaccatccattattcagtcttgtgtcatcccaccatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="18353" stop="19329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18653" g_stop="19029" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E243240" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18653" e_stop="19029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGC</genome_strand>
        <mrna_strand>CAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E551117" ref_strand="+" ref_description="SGN-E551117 [TUS-55-F19]">
      <seq>tttagtgtaaggtctttcaattatggtgttgcgtctcattattacttcagagtttggaacttgacagttgaaacttattgtcatcttctttctgaggtagacttaaaagtataaagcatgtcagaattccaatattttaaatgcatatgtctcctttggctctnattaaatgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="18757" stop="19532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19057" g_stop="19232" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E551117" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>176</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19057" e_stop="19232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTC</genome_strand>
        <mrna_strand>TTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTNATTAAATGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E688920" ref_strand="+" ref_description="SGN-E688920 [t3_tus_55_F19]">
      <seq>tttagtgtaaggtctttcaattatggtgttgcgtctcattattacttcagagtttggaacttgacagttgaaacttattgtcatcttctttctgaggtagacttaaaagtataaagcatgtcagaattccaatattttaaatgcatatgtctcctttggctctnattaaatgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="18757" stop="19532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19057" g_stop="19232" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E688920" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>176</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19057" e_stop="19232"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTC</genome_strand>
        <mrna_strand>TTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTNATTAAATGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262466" ref_strand="+" ref_description="SGN-E262466 [cLEG-56-P17]">
      <seq>ttagtgtaaggtctttcaattatggtgttgcgtctcattattacttcagagtttggaacttgacagttgaaacttattgtcatcttctttctgaggtagacttaaaagtataaagcatgtcagaattccaatattttaaatgcatatgtctcctttggctcttattaaatgattcctcatgtcaaaacttgcttgttccagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtgtatgcatctcctctccagcttatattactgtatttgcttttacagatagatgtgagatgaatccatttatacactcatttagaagataacacatgatactcttattacgaattgagatgaatcttctccatggtttattaatgaacagttttattgaatctcatggtttgcctgtcctatttggtgcttgacagatttatatttttatgccttcgataggtggaattcttgatcttgatcatttatgtgtatttaaaggaatgatgctaaatatgttgctcccttaagagttttaacaaattttaaggacctcaactgtaatttgatatacatgaattcttattttatagcctcnagctaatttggtttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="18758" stop="20398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19058" g_stop="19340" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19341" i_stop="19463" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19464" g_stop="19496" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="316" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19497" i_stop="19604" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19605" g_stop="20098" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="810" r_length="494" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E262466" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19058" e_stop="19340"/>
          <exon e_start="19464" e_stop="19496"/>
          <exon e_start="19605" e_stop="20098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCT</genome_strand>
        <mrna_strand>TTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCNAGCTAATTTGGTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E263078" ref_strand="+" ref_description="SGN-E263078 [cLEG-59-P1]">
      <seq>ttagtgtaaggtctttcaattatggtgttgcgtctcattattacttcagagtttggaacttgacagatgaaacttattgtcatcttctttctgaggtagacttaaaagtataaagcatgtcagaattccaatattttaaatgcatatgtctcctttggctcttattaaatgattcctcatgtcaaaacttgcttgttccagcctcttctttaagcatgaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtgtatgcatctcctctccagcttatattactgtatttgcttttacagatagatgtgagatgaatccatttatacactcatttagaagataacacatgatactcttattacgaattgagatgaatcttctccatggtttattaatgaacagttttattgaatctcatggtttgcctgtcctatttggtgcttgacagatttatatttttatgccttcgataggtggaattcttgatcttgatcatttatgtgtatttaaaggaatgatgctaaatatgttgctcccttaagagttttaacaaattttaaggacctcgactgtaatttgatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="18758" stop="20357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19058" g_stop="19340" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19341" i_stop="19463" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19464" g_stop="19496" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="316" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19497" i_stop="19604" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19605" g_stop="20057" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="769" r_length="453" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E263078" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19058" e_stop="19340"/>
          <exon e_start="19464" e_stop="19496"/>
          <exon e_start="19605" e_stop="20057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATA</genome_strand>
        <mrna_strand>TTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGATGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCATGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCGACTGTAATTTGATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262918" ref_strand="+" ref_description="SGN-E262918 [cLEG-59-B22]">
      <seq>ttagtgtaaggtctttcaattatggtgttgcgtctcattattacttcagagtttggaacttgacagttgaaacttattgtcatcttctttctgaggtagacttaaaagtataaagcatgtcagaattccaatattttaaatgcatatgtctcctttggctcttattaaatgattcctcatgtcaaaacttgcttgttccagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtgtatgcatctcctctccagcttatattactgtatttgcttttacagatagatgtgagatgaatccatttatacactcatttagaagataacacatgatactcttattacgaattgagatgaatcttctccatggtttattaatgaacagttttattgaatctcatggtttgcctgtcctatttggtgcttgacagatttatatttttatgccttcgataggtggaattcttgatcttgatcatttatgtgtatttaaaggaatgatgctaaatatgttgnctcccttaagagttttaacaaattttaaggacctcaactgtaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="18758" stop="20352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19058" g_stop="19340" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19341" i_stop="19463" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19464" g_stop="19496" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="316" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19497" i_stop="19604" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19605" g_stop="20052" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="765" r_length="449" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E262918" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19058" e_stop="19340"/>
          <exon e_start="19464" e_stop="19496"/>
          <exon e_start="19605" e_stop="20052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTG-CTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTG</genome_strand>
        <mrna_strand>TTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGNCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258015" ref_strand="+" ref_description="SGN-E258015 [cLEG-48-J20]">
      <seq>ttagtgtaaggtctttcaattatggtgttgcgtctcattattacttcagagtttggaacttgacagttgaaacttattgtcatcttctttctgaggtagacttaaaagtataaagcatgtcagaattccaatattttaaatgcatatgtctcctttggctcttattaaatgattcctcatgtcaaaacttgcttgttccagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacaatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaagtcaacccaaattccgcagtatgtgggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="18758" stop="19998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19058" g_stop="19340" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19341" i_stop="19463" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19464" g_stop="19496" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="317" r_length="34" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19497" i_stop="19604" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19605" g_stop="19698" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="411" r_length="94" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E258015" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19058" e_stop="19340"/>
          <exon e_start="19464" e_stop="19496"/>
          <exon e_start="19605" e_stop="19698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACA-TGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGC</genome_strand>
        <mrna_strand>TTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACAATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAAGTCAACCCAAATTCCGCAGTATGTGGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E688956" ref_strand="+" ref_description="SGN-E688956 [t3_tus_55_I03]">
      <seq>taaggtctttcaattatggtgttgcgtctcattattacttcaaagtttggaacttgacagttgaaacttattgtcatcttctttctgaggtagacttaaaagtataaagcatgtcagaattccaatattttaaatgcatatgtctcctttggctcttattaaatgattcctcatgtcaaaacttgcttgttccagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtgtatgcatctcctctccagcttatattactgtatttgcttttacagatagatgtgagatgaatccatttatacactcatttagaagataacacatgatactcttattacgaattgagatgaatcttctccatggtttattaatgaacagttttattgaatctcatggtttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="18764" stop="20199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19064" g_stop="19340" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19341" i_stop="19463" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19464" g_stop="19496" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="310" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19497" i_stop="19604" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19605" g_stop="19899" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="605" r_length="295" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E688956" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19064" e_stop="19340"/>
          <exon e_start="19464" e_stop="19496"/>
          <exon e_start="19605" e_stop="19899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCC</genome_strand>
        <mrna_strand>TAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAAAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E551157" ref_strand="+" ref_description="SGN-E551157 [TUS-55-I3]">
      <seq>taaggtctttcaattatggtgttgcgtctcattattacttcaaagtttggaacttgacagttgaaacttattgtcatcttctttctgaggtagacttaaaagtataaagcatgtcagaattccaatattttaaatgcatatgtctcctttggctcttattaaatgattcctcatgtcaaaacttgcttgttccagcctcttctttaagcaggaaatggagctttcattgataggattgcaaaatgcaggaaaaacatctcttgtaaatgttattgcaactggtggatacagtgaagacatgataccaactgtgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtgtatgcatctcctctccagcttatattactgtatttgcttttacagatagatgtgagatgaatccatttatacactcatttagaagataacacatgatactcttattacgaattgagatgaatcttctccatggtttattaatgaacagttttattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="18764" stop="20184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19064" g_stop="19340" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19341" i_stop="19463" i_length="123">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19464" g_stop="19496" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="310" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19497" i_stop="19604" i_length="108">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19605" g_stop="19884" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="590" r_length="280" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E551157" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19064" e_stop="19340"/>
          <exon e_start="19464" e_stop="19496"/>
          <exon e_start="19605" e_stop="19884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCAGTAAGTAAATTCCTTGTTAACCTTCTAGTGCCAGCTCATCATTATTGTTTCACTTGCTTTGCTTCCATATAACTGATGGAATCTGACACCTTAATGGGTTTGTTTCTCTCTTCTTATTCTTAGACTGGTGGATACAGTGAAGACATGATACCAACTGTAAGTTTTCATCCTAAAGGATCTCATACCGGTTTTTACTTTTTGGCCAACTCTGCTAAATACTTTTAAGTGATCTTATATAATTTTATGGAAATTTTTGGTATTCAGGTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGA</genome_strand>
        <mrna_strand>TAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAAAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA...........................................................................................................................ACTGGTGGATACAGTGAAGACATGATACCAACT............................................................................................................GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278871" ref_strand="+" ref_description="SGN-E278871 [cLER-2-A1]">
      <seq>tgggatttaacatgcgcaaagtgacgaaaggaaatgtcactataaaattgtgggaccttggaggtcaacccagattccgcagtatgtgggagcgttactgtcgtgctgtttctgctatagtttatgttgttgatgctgctgatcctgataacctcagcatatcaagtagtgaactccatgacctgttgagcaagccatctctgagtggtattccactgctggtgctgggaaacaaaattgacaagcctgattccctttccaaacaggctttgactgagcagatgggattgaaatcaataactgatagagaagtgtgctgctatatgatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="19306" stop="20954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19606" g_stop="19726" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19727" i_stop="20125" i_length="399">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20126" g_stop="20287" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="283" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20288" i_stop="20606" i_length="319">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20607" g_stop="20654" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="331" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E278871" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19606" e_stop="19726"/>
          <exon e_start="20126" e_stop="20287"/>
          <exon e_start="20607" e_stop="20654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCTGGAATGTTTAAATGTCCTTCCCCGCAGTTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGATGTAAGTGCGGAGTATTAAGCTAGCGATTGGTGGCCTTTTGGCCTTAGTTTACTGTATGGTTGTGGTTAGTGGAAGGGAGGTAAAAGTTTTATCTTTCACTTTAGGTCCAATTCCATAAAACTGGAAAGGAAGGAAAAGAAATTTACTTCTTTCACATGGTATAAAAAGCTTTTGGAAGGAATGCAAATACCTCTGCATGTCCTTCTCATATCTTAGCGGCAGAGAAGATTGGATCATCCCTCCTGCTATCCCTCCTATTTTTATAGCATTAAATATATCTAGGTGCTCTTATCTTAAAGAACATTATGTTGTTTTGCAGGGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTC</genome_strand>
        <mrna_strand>TGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGT...............................................................................................................................................................................................................................................................................................................................................................................................................TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGAT...............................................................................................................................................................................................................................................................................................................................GGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E221803" ref_strand="+" ref_description="SGN-E221803 [cLEL-10-M21](-)">
      <seq>agatgggattgaaatcaataactgatagagaagtgtgctgctatatgatctcgtgcaagaattccaccaatattgactcagtcattgattggcttgttaagcactcgaaatcaaagagctaaagatgactttaactttttctttttttttgtagtggtgctgatctgtatgataaatttgctgaggctattggttttttctgctggtttctccagagttctcttgtactgtaaattaagttattttgtctattgagtgagttgttacatgttttttttcttgccatttttcgtctcaactctctctaattgtgtttgcaattcctcttatactttttacttgtctgctgcacgagtttgtgtgaaaggaacggatctttttaagttttaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="20305" stop="21293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20607" g_stop="20990" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="388" r_length="384" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="389" polyA_stop="410"/>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E221803" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20607" e_stop="20990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTACATGTTTTTTTTCTTGCCATTTTTCGTCTCAACTCTCTCTAATTGTGTTTGCAATTCCTCTTATACTTTTTACTTGTCTGCTGCACGAGTTTGTGTGAAAGGAACGGATCTTTTTAAGTTTT</genome_strand>
        <mrna_strand>GGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTACATGTTTTTTTTCTTGCCATTTTTCGTCTCAACTCTCTCTAATTGTGTTTGCAATTCCTCTTATACTTTTTACTTGTCTGCTGCACGAGTTTGTGTGAAAGGAACGGATCTTTTTAAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E423119" ref_strand="+" ref_description="SGN-E423119 [STM-41-F7]">
      <seq>ttcccacgaaagagaagctgaagatgctacgtcgcacaagacctttggcagttacctttactggcatgattttatcatccatggacggtggacatattgatggttgtatatgtatatatgaacacagtaaaaagcactgcgaacctgacataggaatcataaatgccatgttgaaggtttatggcaagaacgatatgttctataaagctaaggaattatttgagtgggctaagacagagagttctggtcctcaacttagccaggatgattttagctctgcccgtaggccagatgcatacacatacacctcgatgcttgaatcctctgctttctctctccagtgggaatactttgagtatgtgtacaaggagatggctttagctgggtatctgcttgatcaaagcagacatgcgtacctcttggtggaagcatcaaaagctgggaaggtgcatttgctagagcatgcctttgatgcaattctggaagttggtcaaatacctcatccatcattcttctttgagattctatgtcaagctacatgtcaacatgatcatgaaagagcccttgctctaattaaattaatggttcatgttccatttcaagtcagtaaacaagagtggattgacctattcaacagcaacaatgaaagacttagccattctagtttgagaggattattggatgtgatatgcaggcagagtttgggatcagacacgaccattgtaaacttgtgcacggcattggaatctgtttgtggatcttgcacgtcaagtatgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="25004" stop="26719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25298" g_stop="25744" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25745" i_stop="26086" i_length="342">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26087" g_stop="26419" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="779" r_length="333" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E423119" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25298" e_stop="25744"/>
          <exon e_start="26087" e_stop="26419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACTGCAGATTGAGAAGCTGAAGATGCTACGTCGTACAAGACCCTTGGCAGTTACCTTTTCTGGCATGATTTTATCATCCATGGACGGTGGACATATTGATGGTTGTATATGTATATATGATTACAGTAAAAAGCACTGCAAACCTGACATAGGAATCATAAATGCCATGTTGAAGGTTTATGGCAAGAATGATATGTTCTATAAAGCTAAGGAATTATTTGAGTGGGCTAAGACAGAGAGTCATGGTCGTCAACTTAGCAAGGATGATTTTAGTTCTTCCCTTAGTCCAGATGCATACACATACACCTCGATGCTTGAGTCCTCTGCTTGCTCTCTCCAGTGGGAATACTTTGAGTATGTATACAAGGAGATGGCTTTAGCTGGGCATCTGCTTGATCAAAGCAGACATGCCTACCTCTTGGTGGAAGCATCAAAAGCTGGGAAGGTAAAATTTGAAAAACTGGCTTCTTTATCAGGACCTGCATCTTATGAGTTATGATATCTTTTTGACATGCGAATAGTAGACTACACCCTTGTTCCCTATAGAAAGAAAACTTAATCATGATGTTTAGCTGGTCAAAATGTGTAGGACTATAGGTTGATTCAACTCATTTCAATTATTTACTTGCAATTGAGCTATGACAGAAAAAAAATGAGTGAAAGAAAGATTGTGTTCCAGCTGAGTGTCTGTTTTGGACTTATAAAAATCAGTTGTTGGGACTAGATTAAATCCTGTTTGTTTGTATTCAACATTTCCTTTTATAAGCTGCTTTCATTGTTGATGCAGGTGCATTTGCTAGAGCATGCCTTTGATGCAATTCTGGAAGTTGGTCATATACCTCATCCATCATTCTTCTTTGAGATTCTGTGTCAAGCTACATGTCAACATGATCATGAAAGAGCCCTTGCTCTAATTAAATCAATGGTTCATGTTCCATTTCAAGTCAGTAAACAAGAGTGGATTGACCTATTCAACAGCAACAATGGAAGAATTAGCCATTCTAGTTTGAGAGAATTATTGGATGTGATATGCAGCCACAGTTTGGGATCAGACGCGACCATTGTAAACTTGTGCAGGGCATTGAGATCTGTTTGTGGATCTTGCACGTCAAGTATGCTT</genome_strand>
        <mrna_strand>TTCCCAC-GAAAGAGAAGCTGAAGATGCTACGTCGCACAAGACCTTTGGCAGTTACCTTTACTGGCATGATTTTATCATCCATGGACGGTGGACATATTGATGGTTGTATATGTATATATGAACACAGTAAAAAGCACTGCGAACCTGACATAGGAATCATAAATGCCATGTTGAAGGTTTATGGCAAGAACGATATGTTCTATAAAGCTAAGGAATTATTTGAGTGGGCTAAGACAGAGAGTTCTGGTCCTCAACTTAGCCAGGATGATTTTAGCTCTGCCCGTAGGCCAGATGCATACACATACACCTCGATGCTTGAATCCTCTGCTTTCTCTCTCCAGTGGGAATACTTTGAGTATGTGTACAAGGAGATGGCTTTAGCTGGGTATCTGCTTGATCAAAGCAGACATGCGTACCTCTTGGTGGAAGCATCAAAAGCTGGGAAG......................................................................................................................................................................................................................................................................................................................................................GTGCATTTGCTAGAGCATGCCTTTGATGCAATTCTGGAAGTTGGTCAAATACCTCATCCATCATTCTTCTTTGAGATTCTATGTCAAGCTACATGTCAACATGATCATGAAAGAGCCCTTGCTCTAATTAAATTAATGGTTCATGTTCCATTTCAAGTCAGTAAACAAGAGTGGATTGACCTATTCAACAGCAACAATGAAAGACTTAGCCATTCTAGTTTGAGAGGATTATTGGATGTGATATGCAGGCAGAGTTTGGGATCAGACACGACCATTGTAAACTTGTGCACGGCATTGGAATCTGTTTGTGGATCTTGCACGTCAAGTATGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E449777" ref_strand="+" ref_description="SGN-E449777 [cSTS-7-B7]">
      <seq>aggagaagctgaagatgctacgtcgcacaagacctttggcagttacctttactggcatgattttatcatccatggacggtggacatattgatggttgtatatgtatatatgaacacagtaaaaagcactgcgaacctgacataggaatcataaatgccatgttgaaggtttatggcaagaacgatatgttctataaagctaaggaattatttgagtgggctaagacagagagttctggtcctcaacttagccaggatgattttagctctgcccgtaggccagatgcatacacatacacctcgatgcttgaatcctctgctttctctctccagtgggaatactttgagtatgtgtacaaggagatggctttagctgggtatctgcttgatcaaagcagacatgcgtacctcttggtggaagcatcaaaagctgggaaggtgcatttgctagagcatgcctttgatgcaattctggaagttggtcaaatacctcatccatcattcttctttgagattctatgtcaagctacatgtcaacatgatcatgaaagagcccttgctctaattaaattaatggttcatgttccatttcaagtcagtaaacaagagtggattgacctattcaacagcaacaatgaaagacttagccattctagtttgagaggattattggatgtgatatgcangcagagtttgggatcagacacgaccattgtaaacttgtgcagggcattggaaatctgttgtggatcttgcacgtcaagtatgcttataatcaatgaacctgctaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="25010" stop="26741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25308" g_stop="25744" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25745" i_stop="26086" i_length="342">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26087" g_stop="26442" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="793" r_length="356" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E449777" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25308" e_stop="25744"/>
          <exon e_start="26087" e_stop="26442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGAAGCTGAAGATGCTACGTCGTACAAGACCCTTGGCAGTTACCTTTTCTGGCATGATTTTATCATCCATGGACGGTGGACATATTGATGGTTGTATATGTATATATGATTACAGTAAAAAGCACTGCAAACCTGACATAGGAATCATAAATGCCATGTTGAAGGTTTATGGCAAGAATGATATGTTCTATAAAGCTAAGGAATTATTTGAGTGGGCTAAGACAGAGAGTCATGGTCGTCAACTTAGCAAGGATGATTTTAGTTCTTCCCTTAGTCCAGATGCATACACATACACCTCGATGCTTGAGTCCTCTGCTTGCTCTCTCCAGTGGGAATACTTTGAGTATGTATACAAGGAGATGGCTTTAGCTGGGCATCTGCTTGATCAAAGCAGACATGCCTACCTCTTGGTGGAAGCATCAAAAGCTGGGAAGGTAAAATTTGAAAAACTGGCTTCTTTATCAGGACCTGCATCTTATGAGTTATGATATCTTTTTGACATGCGAATAGTAGACTACACCCTTGTTCCCTATAGAAAGAAAACTTAATCATGATGTTTAGCTGGTCAAAATGTGTAGGACTATAGGTTGATTCAACTCATTTCAATTATTTACTTGCAATTGAGCTATGACAGAAAAAAAATGAGTGAAAGAAAGATTGTGTTCCAGCTGAGTGTCTGTTTTGGACTTATAAAAATCAGTTGTTGGGACTAGATTAAATCCTGTTTGTTTGTATTCAACATTTCCTTTTATAAGCTGCTTTCATTGTTGATGCAGGTGCATTTGCTAGAGCATGCCTTTGATGCAATTCTGGAAGTTGGTCATATACCTCATCCATCATTCTTCTTTGAGATTCTGTGTCAAGCTACATGTCAACATGATCATGAAAGAGCCCTTGCTCTAATTAAATCAATGGTTCATGTTCCATTTCAAGTCAGTAAACAAGAGTGGATTGACCTATTCAACAGCAACAATGGAAGAATTAGCCATTCTAGTTTGAGAGAATTATTGGATGTGATATGCAGCCACAGTTTGGGATCAGACGCGACCATTGTAAACTTGTGCAGGGCATT-GAGATCTGTTTGTGGATCTTGCACGTCAAGTATGCTTATAATAGATGAACCTGCTAAATT</genome_strand>
        <mrna_strand>AGGAGAAGCTGAAGATGCTACGTCGCACAAGACCTTTGGCAGTTACCTTTACTGGCATGATTTTATCATCCATGGACGGTGGACATATTGATGGTTGTATATGTATATATGAACACAGTAAAAAGCACTGCGAACCTGACATAGGAATCATAAATGCCATGTTGAAGGTTTATGGCAAGAACGATATGTTCTATAAAGCTAAGGAATTATTTGAGTGGGCTAAGACAGAGAGTTCTGGTCCTCAACTTAGCCAGGATGATTTTAGCTCTGCCCGTAGGCCAGATGCATACACATACACCTCGATGCTTGAATCCTCTGCTTTCTCTCTCCAGTGGGAATACTTTGAGTATGTGTACAAGGAGATGGCTTTAGCTGGGTATCTGCTTGATCAAAGCAGACATGCGTACCTCTTGGTGGAAGCATCAAAAGCTGGGAAG......................................................................................................................................................................................................................................................................................................................................................GTGCATTTGCTAGAGCATGCCTTTGATGCAATTCTGGAAGTTGGTCAAATACCTCATCCATCATTCTTCTTTGAGATTCTATGTCAAGCTACATGTCAACATGATCATGAAAGAGCCCTTGCTCTAATTAAATTAATGGTTCATGTTCCATTTCAAGTCAGTAAACAAGAGTGGATTGACCTATTCAACAGCAACAATGAAAGACTTAGCCATTCTAGTTTGAGAGGATTATTGGATGTGATATGCANGCAGAGTTTGGGATCAGACACGACCATTGTAAACTTGTGCAGGGCATTGGAAATCTG-TTGTGGATCTTGCACGTCAAGTATGCTTATAATCAATGAACCTGCTAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E422503" ref_strand="+" ref_description="SGN-E422503 [STM-40-F7]">
      <seq>aacgacgccattttgttttcagtccccttctgctttcaccttcttcccacttctctaaaaccctaatacaaagtctctgcaattactgaaaatggcatctctagtttcgaaaatctcattgacaagactcttttcccggatccgtgccccatcaatagcttacactctatgcacagctacagaaacccgaacccagaagttggagcggatcgccgaccaacttctggacctgaataagctcgaaaaacatgactactctatcctattccggcacaaaatgggtcttaatcgatatgggcccgctgtttcaggtttgggttctggatcttcttcttctggccctggtgcagcggctgcggatacaaaggtggaagaaaaaactatctttgatgtaaagcttgacaagtttgatgcggcggccaagattaaggtgattaaggaaattaggtcttttactgatttgggtttaaaggaagctaaggagttggtagaaaaagcgccagcagtggtgaaaaagggagtaacgaaagatgaagctaatgccattatagaaaagctcaaggcaataggtgctacagcggtactagaatgaaatttccaattttgcctcatgttcttatactgcaaattgttatttttatggggaatagaaatggaaattgtactccattttgacgaattttggttgcacattgctagggactttactacattgatttgctactcgttgttatgtgccccggtactgattatagttcctggttactgcttcaataaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="27377" stop="28732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27653" g_stop="28433" g_length="781"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="781" r_length="781" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E422503" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E422503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27653" e_stop="28433"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGCCACCGTTTTA-ATTCAGTCCCCCCCTCTCCTTTCACCTTCTTCCCACTTCTCTAAAACCCTAATACAAAGTCTCTGCAATTACTGAAAATGGCATCTCTAGTTTCGAAAATCTCATTGACAAGACTCTTTTCCCGGATCCGTGCCCCATCAATAGCTTACACTCTATGCACAGCTACAGAAACCCGAACGCAGAAGTTGGAGCGGATCGCCGACCAACTTTTGGACCTGAATAAGCTCGAAAAGCATGACTACTCCATCCTCTTCCGGCACAAAATGGGTCTTAACCGATATGGACCTGCTGTTTCAGGTTTGGGCTCTGGATCTTCTTCTTCCGGCCCTGGTGCAGCGGCTGCGGATGCAAAGGTGGAAGAAAAAACCATCTTTGATGTAAAGCTTGACAAGTTTGATGCGGCGGCGAAGATTAAGGTGATTAAGGAAATTAGGTCTTTTACTGATTTGGGTTTAAAGGAAGCTAAGGAGTTGGTAGAAAAAGCGCCAGCAGTGGTGAAAAAGGGTGTAACGAAAGATGAAGCTAATGCCATTATAGAAAAGCTCAAGGCAATAGGTGCTACAGCGGTATTAGAATGAAATTTCCAATTTTGCCTCATGTTCTTATACTTTAAATTGTTATTTTTATGGGGAATAGAAATGGAAATTGTACTCCATTTTGACGAATTTTGGTTGCACATTGTTAGGGACTTCACAACATTGATTTGCTACTCATTTTTATGTG-CCCGTTACTGTTTATAGTTCCTGGTTACTGCTACAATAAACTC</genome_strand>
        <mrna_strand>AACGACGCCATTTTGTTTTCAGT-CCCC-TTCTGCTTTCACCTTCTTCCCACTTCTCTAAAACCCTAATACAAAGTCTCTGCAATTACTGAAAATGGCATCTCTAGTTTCGAAAATCTCATTGACAAGACTCTTTTCCCGGATCCGTGCCCCATCAATAGCTTACACTCTATGCACAGCTACAGAAACCCGAACCCAGAAGTTGGAGCGGATCGCCGACCAACTTCTGGACCTGAATAAGCTCGAAAAACATGACTACTCTATCCTATTCCGGCACAAAATGGGTCTTAATCGATATGGGCCCGCTGTTTCAGGTTTGGGTTCTGGATCTTCTTCTTCTGGCCCTGGTGCAGCGGCTGCGGATACAAAGGTGGAAGAAAAAACTATCTTTGATGTAAAGCTTGACAAGTTTGATGCGGCGGCCAAGATTAAGGTGATTAAGGAAATTAGGTCTTTTACTGATTTGGGTTTAAAGGAAGCTAAGGAGTTGGTAGAAAAAGCGCCAGCAGTGGTGAAAAAGGGAGTAACGAAAGATGAAGCTAATGCCATTATAGAAAAGCTCAAGGCAATAGGTGCTACAGCGGTACTAGAATGAAATTTCCAATTTTGCCTCATGTTCTTATACTGCAAATTGTTATTTTTATGGGGAATAGAAATGGAAATTGTACTCCATTTTGACGAATTTTGGTTGCACATTGCTAGGGACTTTACTACATTGATTTGCTACTCGTTGTTATGTGCCCCGGTACTGATTATAGTTCCTGGTTACTGCTTCAATAAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E448475" ref_strand="+" ref_description="SGN-E448475 [cSTS-3-E24]">
      <seq>aacgacgccattttgttttcagtccccttctgctttcaccttcttcccacttctctaaaaccctaatacaaagtctctgcaattactgaaaatggcatctctagtttcgaaaatctcattgacaagactcttttcccggatccgtgccccatcaatagcttacactctatgcacagctacagaaacccgaacccagaagttggagcggatcgccgaccaacttctggacctgaataagctcgaaaaacatgactactctatcctattccggcacaaaatgggtcttaatcgatatgggcccgctgtttcaggtttgggttctggatcttcttcttctggccctggtgcagcggctgcggatacaaaggtggaagaaaaaactatctttgatgtaaagcttgacaagtttgatgcggcggccaagattaaggtgattaaggaaattaggtcttttactgatttgggtttaaaggaagctaaggagttggtagaaaaagcgccagcagtggtgaaaaagggagtaacgaaagatgaagctaatgccattatagaaaagctcaaggcaataggtgctacagcggtactagaatgaaatttccaattttgcctcatgttcttatactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="27377" stop="28576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27653" g_stop="28278" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E448475" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27653" e_stop="28278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGCCACCGTTTTA-ATTCAGTCCCCCCCTCTCCTTTCACCTTCTTCCCACTTCTCTAAAACCCTAATACAAAGTCTCTGCAATTACTGAAAATGGCATCTCTAGTTTCGAAAATCTCATTGACAAGACTCTTTTCCCGGATCCGTGCCCCATCAATAGCTTACACTCTATGCACAGCTACAGAAACCCGAACGCAGAAGTTGGAGCGGATCGCCGACCAACTTTTGGACCTGAATAAGCTCGAAAAGCATGACTACTCCATCCTCTTCCGGCACAAAATGGGTCTTAACCGATATGGACCTGCTGTTTCAGGTTTGGGCTCTGGATCTTCTTCTTCCGGCCCTGGTGCAGCGGCTGCGGATGCAAAGGTGGAAGAAAAAACCATCTTTGATGTAAAGCTTGACAAGTTTGATGCGGCGGCGAAGATTAAGGTGATTAAGGAAATTAGGTCTTTTACTGATTTGGGTTTAAAGGAAGCTAAGGAGTTGGTAGAAAAAGCGCCAGCAGTGGTGAAAAAGGGTGTAACGAAAGATGAAGCTAATGCCATTATAGAAAAGCTCAAGGCAATAGGTGCTACAGCGGTATTAGAATGAAATTTCCAATTTTGCCTCATGTTCTTATACTTT</genome_strand>
        <mrna_strand>AACGACGCCATTTTGTTTTCAGT-CCCC-TTCTGCTTTCACCTTCTTCCCACTTCTCTAAAACCCTAATACAAAGTCTCTGCAATTACTGAAAATGGCATCTCTAGTTTCGAAAATCTCATTGACAAGACTCTTTTCCCGGATCCGTGCCCCATCAATAGCTTACACTCTATGCACAGCTACAGAAACCCGAACCCAGAAGTTGGAGCGGATCGCCGACCAACTTCTGGACCTGAATAAGCTCGAAAAACATGACTACTCTATCCTATTCCGGCACAAAATGGGTCTTAATCGATATGGGCCCGCTGTTTCAGGTTTGGGTTCTGGATCTTCTTCTTCTGGCCCTGGTGCAGCGGCTGCGGATACAAAGGTGGAAGAAAAAACTATCTTTGATGTAAAGCTTGACAAGTTTGATGCGGCGGCCAAGATTAAGGTGATTAAGGAAATTAGGTCTTTTACTGATTTGGGTTTAAAGGAAGCTAAGGAGTTGGTAGAAAAAGCGCCAGCAGTGGTGAAAAAGGGAGTAACGAAAGATGAAGCTAATGCCATTATAGAAAAGCTCAAGGCAATAGGTGCTACAGCGGTACTAGAATGAAATTTCCAATTTTGCCTCATGTTCTTATACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E448250" ref_strand="+" ref_description="SGN-E448250 [cSTS-2-M4]">
      <seq>cagctacagaaacccgaacccagaagttggagcggatcgccgaccaacttctggacctgaataagctcgaaaaacatgactactctatcctattccggcacaaaatgggtcttaatcgatatgggcccgctgtttcaggtttgggttctggatcttcttcttctggccctggtgcagcggctgcggatacaaaggtggaagaaaaaactatctttgatgtaaagcttgacaagtttgatgcggcggccaagattaaggtgattaaggaaattaggtcttttactgatttgggtttaaaggaagctaaggagttggtagaaaaagcgccagcagtggtgaaaaagggagtaacgaaagatgaagctaatgccattatagaaaagctcaaggcaataggtgctacagcggtactagaatgaaatttccaattntgcctcatgttcttatactgcaaattgttatttttatggggaatagaaatggaaattgtactccattttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="27527" stop="28628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27827" g_stop="28328" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E448250" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27827" e_stop="28328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTACAGAAACCCGAACGCAGAAGTTGGAGCGGATCGCCGACCAACTTTTGGACCTGAATAAGCTCGAAAAGCATGACTACTCCATCCTCTTCCGGCACAAAATGGGTCTTAACCGATATGGACCTGCTGTTTCAGGTTTGGGCTCTGGATCTTCTTCTTCCGGCCCTGGTGCAGCGGCTGCGGATGCAAAGGTGGAAGAAAAAACCATCTTTGATGTAAAGCTTGACAAGTTTGATGCGGCGGCGAAGATTAAGGTGATTAAGGAAATTAGGTCTTTTACTGATTTGGGTTTAAAGGAAGCTAAGGAGTTGGTAGAAAAAGCGCCAGCAGTGGTGAAAAAGGGTGTAACGAAAGATGAAGCTAATGCCATTATAGAAAAGCTCAAGGCAATAGGTGCTACAGCGGTATTAGAATGAAATTTCCAATTTTGCCTCATGTTCTTATACTTTAAATTGTTATTTTTATGGGGAATAGAAATGGAAATTGTACTCCATTTTGA</genome_strand>
        <mrna_strand>CAGCTACAGAAACCCGAACCCAGAAGTTGGAGCGGATCGCCGACCAACTTCTGGACCTGAATAAGCTCGAAAAACATGACTACTCTATCCTATTCCGGCACAAAATGGGTCTTAATCGATATGGGCCCGCTGTTTCAGGTTTGGGTTCTGGATCTTCTTCTTCTGGCCCTGGTGCAGCGGCTGCGGATACAAAGGTGGAAGAAAAAACTATCTTTGATGTAAAGCTTGACAAGTTTGATGCGGCGGCCAAGATTAAGGTGATTAAGGAAATTAGGTCTTTTACTGATTTGGGTTTAAAGGAAGCTAAGGAGTTGGTAGAAAAAGCGCCAGCAGTGGTGAAAAAGGGAGTAACGAAAGATGAAGCTAATGCCATTATAGAAAAGCTCAAGGCAATAGGTGCTACAGCGGTACTAGAATGAAATTTCCAATTNTGCCTCATGTTCTTATACTGCAAATTGTTATTTTTATGGGGAATAGAAATGGAAATTGTACTCCATTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E422504" ref_strand="-" ref_description="SGN-E422504 [STM-40-F7]">
      <seq>aattaggtcttttaccgatttgggtttaaaggaagctaaggagtcggtagaaaaagcgccagcagtggtgaaaaagggagtaacgaaagatgaagctaatgccattatagaaaagctcaaggcaataggtgctacagcggtactagaatgaaatttccaattttgcctcatgttcttatactgcaaattgttatttttatggggaatagaaatggaaattgtactccattttgacgaattttggttgcacattgctagggactttactacattgatttgctactcgtttttatgtgccccgttactgtttatagttcctggttactgcttcaataaacttttatgtcagctcagttgcgctgtgctatagagtagatcgaaattgtaataacttgctgggattgcgggtgttgattatcttgggttgcaagatccatttttctcccttttaacatggatttacttacaaatggcttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="27795" stop="28870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28095" g_stop="28570" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="478" polyA_stop="497"/>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E422504" ref_strand="-">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E422504" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="28095" e_stop="28570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTAGGTCTTTTACTGATTTGGGTTTAAAGGAAGCTAAGGAGTTGGTAGAAAAAGCGCCAGCAGTGGTGAAAAAGGGTGTAACGAAAGATGAAGCTAATGCCATTATAGAAAAGCTCAAGGCAATAGGTGCTACAGCGGTATTAGAATGAAATTTCCAATTTTGCCTCATGTTCTTATACTTTAAATTGTTATTTTTATGGGGAATAGAAATGGAAATTGTACTCCATTTTGACGAATTTTGGTTGCACATTGTTAGGGACTTCACAACATTGATTTGCTACTCATTTTTATGTG-CCCGTTACTGTTTATAGTTCCTGGTTACTGCTACAATAAACTCTTATCTTAGTTCAGTTACTCTGTGCAATAGAGTAGATTGAAATTGTAATAACTTGCTGGGATTGAGCATGTTGATTATTTTGGATTGCAAGATCCATTGTTCTCCCTTTTAACATGGATTTACTTACAAATGGCTTA</genome_strand>
        <mrna_strand>AATTAGGTCTTTTACCGATTTGGGTTTAAAGGAAGCTAAGGAGTCGGTAGAAAAAGCGCCAGCAGTGGTGAAAAAGGGAGTAACGAAAGATGAAGCTAATGCCATTATAGAAAAGCTCAAGGCAATAGGTGCTACAGCGGTACTAGAATGAAATTTCCAATTTTGCCTCATGTTCTTATACTGCAAATTGTTATTTTTATGGGGAATAGAAATGGAAATTGTACTCCATTTTGACGAATTTTGGTTGCACATTGCTAGGGACTTTACTACATTGATTTGCTACTCGTTTTTATGTGCCCCGTTACTGTTTATAGTTCCTGGTTACTGCTTCAATAAACTTTTATGTCAGCTCAGTTGCGCTGTGCTATAGAGTAGATCGAAATTGTAATAACTTGCTGGGATTGCGGGTGTTGATTATCTTGGGTTGCAAGATCCATTTTTCTCCCTTTTAACATGGATTTACTTACAAATGGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E419979" ref_strand="+" ref_description="SGN-E419979 [STM-30-D9]">
      <seq>caacttaattaggtttttcaatagaacattcggcatattatacattgataatgcaaaacaactttgaatactaccacagtagttttaatcaattatagcagattacatctcctctttcagttacacaataacttgatggtcaacatttttttacactgacatacaaaaatataagagttccaaaagtagttgaacaaaatattagaacaaacaaggtcaatataaaagtttctactcccctgaaaagtcaacaccggagaaccgatcctaaggaaacaactgcaatattagaagctcctggaaaagctagcaagttcttaaacacttttgagatattggctgaagagatattgcatccattgtgccatggcgctattaccagtttctcaagattttttgcatgctcaagcaaagacttcaaaaattctgaaaggcgctctgttgcgtcagctttgtgttgacaactacaacagtttgaagtaacttccacatgcttcaaattctgtaaggagcctttgaatatgttttcatgcaaggagagggaaatgtctcctgaccaatcaaactcttcatctttcaagtcttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="29989" stop="31171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30305" g_stop="30871" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="588" r_length="569" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E419979" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30305" e_stop="30871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGAACATACGGCATATTATACATTGATAATGCAAAACAACTTTGAATACTACCACAGAAG-TTTAATCAATTATAGTAGATTGCTTCTCCTCTTTAAGTTGCACAGTAACTTGATGATCAACATTTTTTTACACTGACATACAAAAACATAAGAGTTCCAAAAGTAGTTGAACAAAATATTAGAACAAACAAGGTCAATATAAAAGTTTCTACTCCCCTGAAAAGTCAAAACCGGAG-ACCAATCCTAAGGAAACAACTGCAATATTAGAAGCTCCTGGTAAAGCTAGCAAGTTCTTAATCACTTTTGAGATATTGGCTGAAGAGATATTGCATCCATTGTGCCATGGCGCTATAACCAGTTTCTCAAGATTTTTTGCATGCTCAAGCAAGGACTTCAAAAATTCTGAAAGGCGCTCTGTTGCGTCAGCTTTGTGTTGACAACTACAACAGTTTGAAGTAACCTCAACATGCTTCAAATTCTGCAAGGAGCCTTTGAATATGTTTTCATGCAAGGAGAGGGATTTGTCTCCTAACCAATCAAACACTTCTTCTTCCAAGTATTCAT</genome_strand>
        <mrna_strand>AATAGAACATTCGGCATATTATACATTGATAATGCAAAACAACTTTGAATACTACCACAGTAGTTTTAATCAATTATAGCAGATTACATCTCCTCTTTCAGTTACACAATAACTTGATGGTCAACATTTTTTTACACTGACATACAAAAATATAAGAGTTCCAAAAGTAGTTGAACAAAATATTAGAACAAACAAGGTCAATATAAAAGTTTCTACTCCCCTGAAAAGTCAACACCGGAGAACCGATCCTAAGGAAACAACTGCAATATTAGAAGCTCCTGGAAAAGCTAGCAAGTTCTTAAACACTTTTGAGATATTGGCTGAAGAGATATTGCATCCATTGTGCCATGGCGCTATTACCAGTTTCTCAAGATTTTTTGCATGCTCAAGCAAAGACTTCAAAAATTCTGAAAGGCGCTCTGTTGCGTCAGCTTTGTGTTGACAACTACAACAGTTTGAAGTAACTTCCACATGCTTCAAATTCTGTAAGGAGCCTTTGAATATGTTTTCATGCAAGGAGAGGGAAATGTCTCCTGACCAATCAAACTCTTCATCTTTCAAGTCTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242215" ref_strand="+" ref_description="SGN-E242215 [cLED-37-G18]">
      <seq>tccttcgaagtagttgccccatatattcaacatctaaagatttcggggcattttgataatgtggaaataagacttggggacctttcatctttagtcattgctgatcttactttctctgttgatattgtatatgacaataccgtggaacttctcttggcaagtgtacgttgtgctaatgagctaatgatcccatgctggtttatcgagatgatttatgtggcggtgatagaaaagaagaaagatgttccatttctgatgcggaagtgcaaacggttgacgataaattcttggatttcaaaaaatgccattctcggcataggtgttctcttaaagtcaactccttatctggagaatttgacgatacttcatgaagagggagatttctttgtctgggatgaatacttggaagaagaagtgtttgattggttaggagacaaatccctctccttgcatgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="34065" stop="30508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33765" g_stop="33559" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33558" i_stop="31670" i_length="1889">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31669" g_stop="31502" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="375" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31501" i_stop="30891" i_length="611">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30890" g_stop="30808" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="458" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E242215" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33765" e_stop="33559"/>
          <exon e_start="31669" e_stop="31502"/>
          <exon e_start="30890" e_stop="30808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTCGAAGTAGTTGCCCCATATATTCAACATCTAAAGATTTCGGGGCATTTTGATAATGTGGAAATAAGACTTGGGGACCTTTCATCTTTAGTCATTGCTGATCTTACTTTCTCTGTTGATATTGTATATGACAATACCGTGGAACTTCTCTTGGCAAGTGTACGTTGTGCTAATGAGCTAATGATCCCATGCTGGTTTATCGAGGTAAGTTTTCAGCCAAAAACTCTCCAGTCTTTTTTATGCTGAATATGAATATAATACACATACATGTGTTGTGTCAGTGAGAACAATTTACAATACTTTTGAAAACCACATACCAAGAAATGTGTGTGCATTTAAAGTCAAATTATAATTAAGATAGACTAAACAAAGTCAGAATACTAAGGGGGAAAAAAAGAATGACACAGTAACAAAAAGAAAAAGATTCAATCTAGACAGCTCTGAATCTCCAGAAGAACTTAAACAATATAGAGAAAATTGAGAGCACGATGATGCAGGTGTAAAACTTGTCTCTGTAAGATGTATTGCTCTATAGTAAAACAGACGTAAAAAGGTAAAATTGAAATAAGATAGAAGGTCTACCTAATCTTGGAGTTTGATACCAAGGAAACACTTGTCTAGGCTAAAAGGCAAGTAATGGTAATACTCACTACATTAAGTAAATCATAGAGTGACTAGTTGAAGAATATTCTTTGAATAAGGAACTTTTTAGATGAGCCAAATGCACCCAAACAAATCAATAGCCAAATGGCCACTCGTTATTAGGATTGATGAGTGAGAAGGGACACTTGCATATATAGGTACTCTTTTGGTGCATTAATGAGTAATCACTCGTCGTTGGTGTCAAATCCTCTGTTGTCGCTGGCATAGGTCCCCACACTACTCGAATATCCCTGATTTGCTGTGAATGAAAAAGTAGTTCATATCCTCTATGAACCTCTCACATCATGAGCACCTACTACAGATGTTGACCCTCTTCTTTGGAGGTTCTCCTGGGTTAAACAAGCTCCTTAAGGCACCAGCCAGGTAAAGCAAAGATCTTTAAGCATCCTACTTCCAGGGGAGCTTTGCTTTTCCAAATGCATTTCATAAGCCAAAATGTGCTACTGCCAGAAGATCTCCTAGATAGACTAATATTCTTTGATCTTGAAGTTACCTACTGTGTTTCCTTTCCACAAAAGAGATTCAGGACTGGAAGATAAAGGGGGGCAGCTATGCAACTTATATAAAAGTGAGGACACGGTTAAATTCACAATCATTTTTGCTGCACCAGAGACCAAAAACGCAGTCCTGTTCAGATCACATTTCTGAAATTGTAGCATCTTGTGTTTGTGCAATACTGTAAATATATGGATACTGCATCTTCGGTGGTGTTTGGACTAGCCAAACATCCTCCCAGAACTTGTCTCCTTCACATTTCCAACTTGAAGAGGTGATGGCGAAAAAATAATTTTTGTGGACTCTAATATGCCTCCATATACCATAGGGACTGTTGCCGAACCTGGTCAGTTATCCAAGGGATCAGGCATGCATTTTTACCATAACGACACCTCCAAAGTGCCTTCTCTTCATTACTACATCCTCATAACTACTTCTGCAGTGAGCTGTTGCTCTGCATCTTCAATTTCTCTACTCTTAAGTTCTCCCTGCCTTCAAATTTGCGGTGACTGATTCCCAACTTACCAAGTGAAGGTTCTGTATTCTCTCTCTCTCTTGCAGAAGCAATTCCTATGTAGTTTGTTTGTCCAACCTTTTTGTCACTGAAAACATGCAGTGGAGCAAAGAGATAGGGTATATGGGATATTATTCTGAACTTAAAACAGTTTTTGTTGGATGTTATCATCACACAGTAGCTTTGTAACTGAATTCCTTGTTAACTATGTTTGTTTTCTAATATATTATAGAGACTATGGGGAAGTTCTGAGGCTAGAAAAAGATCAAACTAAGACCATAGAAACATTCTGTTGTCGGGTGAAGGGGTGTGAAGGGTGAAACTTTAACCCATGAGTTTGGGATGTTTTTAAGCCCTATAAAATTTGATATCGTGATACTTAATGTACTTACCTTCTACTCTGCTTCTCTCTCCCATTTAGATGATTTATGTGGCGGTGATAGAAAAGAAGAAAGATGTTCCATTTCTGATGCGGAAGTGCAAACGGTTGACGATAAATTCTTGGATTTCAAAAAATGCCATTCTCGGCATAGGTGTTCTCTTAAAGTCAACTCCTTATCTGGAGAATTTGACGATACTTCATGAAGAGGTATGTTTTCAACTGATTCTTGCTTTGAGATACCTTTTATATTCTTTTTCACTCTTTAATTTTTTCCCTTGTGTTTGTTTCATTATCCTTTACATTTTCAATATCACGTTTTGAGGCATAATATAGCCTTGGATATCAAGCTGTTTTATGTATAGCGCCCTTTATTACTGAAATTGTTGCCCATCAGACCTACATTTTCTAATTTCTAAATATATGCGACCATAGTGTTGCTGCACTGAAGACTCTTCTTCCTTTTACAATGAGTTATTAGCTTCTTGCTTTTGTTTGGCATAAAATATTACATTCAATCGTCTATTGATCTCCAACGACATCAATGGGAAGTCTTCAACATTTTTAGTACTTTCCACTAAATTACTATCAGTGGTCTATCTCAATGTAATTATACACCTTCTGACTAAAAAGTACTTTCATCTGTTTGTCTAATGTTTGACTACTATGTTGCTTATATGTCCGTCTCAGATTCTCTTCTGTGTGTTGTTCTGCAATTTCAGTACCATAAAATTCCATTCTAAAATCCATACATTTACTCAAGTATGTTCCACCTGTTACACTTACACTTAACCTGATTTGTGGTTCTTCTGTATCCGTAGGGAGATTTCTTTGTCTGGGATGAATACTTGGAAGAAGAAGTGTTTGATTGGTTAGGAGACAAATCCCTCTCCTTGCATGAAAA</genome_strand>
        <mrna_strand>TCCTTCGAAGTAGTTGCCCCATATATTCAACATCTAAAGATTTCGGGGCATTTTGATAATGTGGAAATAAGACTTGGGGACCTTTCATCTTTAGTCATTGCTGATCTTACTTTCTCTGTTGATATTGTATATGACAATACCGTGGAACTTCTCTTGGCAAGTGTACGTTGTGCTAATGAGCTAATGATCCCATGCTGGTTTATCGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTTATGTGGCGGTGATAGAAAAGAAGAAAGATGTTCCATTTCTGATGCGGAAGTGCAAACGGTTGACGATAAATTCTTGGATTTCAAAAAATGCCATTCTCGGCATAGGTGTTCTCTTAAAGTCAACTCCTTATCTGGAGAATTTGACGATACTTCATGAAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGATTTCTTTGTCTGGGATGAATACTTGGAAGAAGAAGTGTTTGATTGGTTAGGAGACAAATCCCTCTCCTTGCATGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E210769" ref_strand="+" ref_description="SGN-E210769 [cLEC-68-E4]">
      <seq>tcaaagcccctatgtcttgccacaagttctctgcaacaactcatccattgtaaaatttaattgcgagttttgcagaataccagaagaatgtgtactaaactggacatccctgaagagtttgacactaacctatttgtttcttcgggacgaacatgttgaacaaatagtaacaaattgtcctcagttggaattgttgaagctatgtgagttttgtggttttcatcgcttacatataacttctccaaaatgtaggagtctgcaattgattgatcatgcccatcctgatggagattggggtccatttggcggtgattgttccttcgaagtagttgccccatatattcaacatctaaagatttcggggcattttgataatgtggaaataagacttggggacctttcatctttagtcattgctgatcttactttctctgttgatattgtatatgacaataccgtggaacttctcttggcaagtgtacgttgtgctaatgagctaatgatcccatgctggtttatcgagatgatttatgtggcggtgatagaaaagaagaaagatgttccatttctgatgcggaagtgcaaacggttgacgataaattcttggatttcaaaaaatgccattctcggcataggtgttctcttaaagtcaactccttatctggagaatttgacgatacttcatgaagagggagatttctttgtctgggatgaatacttggaagaaagagtgtttgattggttangagacnaatccctctccttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="34381" stop="30514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34081" g_stop="33559" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33558" i_stop="31670" i_length="1889">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31669" g_stop="31502" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="691" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31501" i_stop="30891" i_length="611">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30890" g_stop="30814" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="768" r_length="77" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E210769" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34081" e_stop="33559"/>
          <exon e_start="31669" e_stop="31502"/>
          <exon e_start="30890" e_stop="30814"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGCCCCTATGTCTTGCCACAAGTTCTCTGCAACAACTCATCCATTGTAAAATTTAATTGCGAGTTTTGCAGAATACCAGAAGAATGTGTACTAAACTGGACATCCCTGAAGAGTTTGACACTAACCTATTTGTTTCTTCGGGACGAACATGTTGAACAAATAGTAACAAATTGTCCTCAGTTGGAATTGTTGAAGCTATGTGAGTTTTGTGGTTTTCATCGCTTACATATAACTTCTCCAAAATGTAGGAGTCTGCAATTGATTGATCATGCCCATCCTGATGGAGATTGGGGTCCATTTGGCGGTGATTGTTCCTTCGAAGTAGTTGCCCCATATATTCAACATCTAAAGATTTCGGGGCATTTTGATAATGTGGAAATAAGACTTGGGGACCTTTCATCTTTAGTCATTGCTGATCTTACTTTCTCTGTTGATATTGTATATGACAATACCGTGGAACTTCTCTTGGCAAGTGTACGTTGTGCTAATGAGCTAATGATCCCATGCTGGTTTATCGAGGTAAGTTTTCAGCCAAAAACTCTCCAGTCTTTTTTATGCTGAATATGAATATAATACACATACATGTGTTGTGTCAGTGAGAACAATTTACAATACTTTTGAAAACCACATACCAAGAAATGTGTGTGCATTTAAAGTCAAATTATAATTAAGATAGACTAAACAAAGTCAGAATACTAAGGGGGAAAAAAAGAATGACACAGTAACAAAAAGAAAAAGATTCAATCTAGACAGCTCTGAATCTCCAGAAGAACTTAAACAATATAGAGAAAATTGAGAGCACGATGATGCAGGTGTAAAACTTGTCTCTGTAAGATGTATTGCTCTATAGTAAAACAGACGTAAAAAGGTAAAATTGAAATAAGATAGAAGGTCTACCTAATCTTGGAGTTTGATACCAAGGAAACACTTGTCTAGGCTAAAAGGCAAGTAATGGTAATACTCACTACATTAAGTAAATCATAGAGTGACTAGTTGAAGAATATTCTTTGAATAAGGAACTTTTTAGATGAGCCAAATGCACCCAAACAAATCAATAGCCAAATGGCCACTCGTTATTAGGATTGATGAGTGAGAAGGGACACTTGCATATATAGGTACTCTTTTGGTGCATTAATGAGTAATCACTCGTCGTTGGTGTCAAATCCTCTGTTGTCGCTGGCATAGGTCCCCACACTACTCGAATATCCCTGATTTGCTGTGAATGAAAAAGTAGTTCATATCCTCTATGAACCTCTCACATCATGAGCACCTACTACAGATGTTGACCCTCTTCTTTGGAGGTTCTCCTGGGTTAAACAAGCTCCTTAAGGCACCAGCCAGGTAAAGCAAAGATCTTTAAGCATCCTACTTCCAGGGGAGCTTTGCTTTTCCAAATGCATTTCATAAGCCAAAATGTGCTACTGCCAGAAGATCTCCTAGATAGACTAATATTCTTTGATCTTGAAGTTACCTACTGTGTTTCCTTTCCACAAAAGAGATTCAGGACTGGAAGATAAAGGGGGGCAGCTATGCAACTTATATAAAAGTGAGGACACGGTTAAATTCACAATCATTTTTGCTGCACCAGAGACCAAAAACGCAGTCCTGTTCAGATCACATTTCTGAAATTGTAGCATCTTGTGTTTGTGCAATACTGTAAATATATGGATACTGCATCTTCGGTGGTGTTTGGACTAGCCAAACATCCTCCCAGAACTTGTCTCCTTCACATTTCCAACTTGAAGAGGTGATGGCGAAAAAATAATTTTTGTGGACTCTAATATGCCTCCATATACCATAGGGACTGTTGCCGAACCTGGTCAGTTATCCAAGGGATCAGGCATGCATTTTTACCATAACGACACCTCCAAAGTGCCTTCTCTTCATTACTACATCCTCATAACTACTTCTGCAGTGAGCTGTTGCTCTGCATCTTCAATTTCTCTACTCTTAAGTTCTCCCTGCCTTCAAATTTGCGGTGACTGATTCCCAACTTACCAAGTGAAGGTTCTGTATTCTCTCTCTCTCTTGCAGAAGCAATTCCTATGTAGTTTGTTTGTCCAACCTTTTTGTCACTGAAAACATGCAGTGGAGCAAAGAGATAGGGTATATGGGATATTATTCTGAACTTAAAACAGTTTTTGTTGGATGTTATCATCACACAGTAGCTTTGTAACTGAATTCCTTGTTAACTATGTTTGTTTTCTAATATATTATAGAGACTATGGGGAAGTTCTGAGGCTAGAAAAAGATCAAACTAAGACCATAGAAACATTCTGTTGTCGGGTGAAGGGGTGTGAAGGGTGAAACTTTAACCCATGAGTTTGGGATGTTTTTAAGCCCTATAAAATTTGATATCGTGATACTTAATGTACTTACCTTCTACTCTGCTTCTCTCTCCCATTTAGATGATTTATGTGGCGGTGATAGAAAAGAAGAAAGATGTTCCATTTCTGATGCGGAAGTGCAAACGGTTGACGATAAATTCTTGGATTTCAAAAAATGCCATTCTCGGCATAGGTGTTCTCTTAAAGTCAACTCCTTATCTGGAGAATTTGACGATACTTCATGAAGAGGTATGTTTTCAACTGATTCTTGCTTTGAGATACCTTTTATATTCTTTTTCACTCTTTAATTTTTTCCCTTGTGTTTGTTTCATTATCCTTTACATTTTCAATATCACGTTTTGAGGCATAATATAGCCTTGGATATCAAGCTGTTTTATGTATAGCGCCCTTTATTACTGAAATTGTTGCCCATCAGACCTACATTTTCTAATTTCTAAATATATGCGACCATAGTGTTGCTGCACTGAAGACTCTTCTTCCTTTTACAATGAGTTATTAGCTTCTTGCTTTTGTTTGGCATAAAATATTACATTCAATCGTCTATTGATCTCCAACGACATCAATGGGAAGTCTTCAACATTTTTAGTACTTTCCACTAAATTACTATCAGTGGTCTATCTCAATGTAATTATACACCTTCTGACTAAAAAGTACTTTCATCTGTTTGTCTAATGTTTGACTACTATGTTGCTTATATGTCCGTCTCAGATTCTCTTCTGTGTGTTGTTCTGCAATTTCAGTACCATAAAATTCCATTCTAAAATCCATACATTTACTCAAGTATGTTCCACCTGTTACACTTACACTTAACCTGATTTGTGGTTCTTCTGTATCCGTAGGGAGATTTCTTTGTCTGGGATGAATACTTGGAAGAAGAAGTGTTTGATTGGTTAGGAGACAAATCCCTCTCCTTGCA</genome_strand>
        <mrna_strand>TCAAAGCCCCTATGTCTTGCCACAAGTTCTCTGCAACAACTCATCCATTGTAAAATTTAATTGCGAGTTTTGCAGAATACCAGAAGAATGTGTACTAAACTGGACATCCCTGAAGAGTTTGACACTAACCTATTTGTTTCTTCGGGACGAACATGTTGAACAAATAGTAACAAATTGTCCTCAGTTGGAATTGTTGAAGCTATGTGAGTTTTGTGGTTTTCATCGCTTACATATAACTTCTCCAAAATGTAGGAGTCTGCAATTGATTGATCATGCCCATCCTGATGGAGATTGGGGTCCATTTGGCGGTGATTGTTCCTTCGAAGTAGTTGCCCCATATATTCAACATCTAAAGATTTCGGGGCATTTTGATAATGTGGAAATAAGACTTGGGGACCTTTCATCTTTAGTCATTGCTGATCTTACTTTCTCTGTTGATATTGTATATGACAATACCGTGGAACTTCTCTTGGCAAGTGTACGTTGTGCTAATGAGCTAATGATCCCATGCTGGTTTATCGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGATTTATGTGGCGGTGATAGAAAAGAAGAAAGATGTTCCATTTCTGATGCGGAAGTGCAAACGGTTGACGATAAATTCTTGGATTTCAAAAAATGCCATTCTCGGCATAGGTGTTCTCTTAAAGTCAACTCCTTATCTGGAGAATTTGACGATACTTCATGAAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGATTTCTTTGTCTGGGATGAATACTTGGAAGAAAGAGTGTTTGATTGGTTANGAGACNAATCCCTCTCCTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E419978" ref_strand="+" ref_description="SGN-E419978 [STM-30-D9]">
      <seq>ccaaaattgacaagtggcttgaaattgctttaaagaaaaaagtggaggatcttgacctggaaatatggtattatgatcaaaacccctatgtcttgccacaagttctctgcaacaactcatccattgtaaagtttaattgcgagttttgcagaataccagaagaatgtgtactaaattggacatccctgaagagtttgacactaacctatttgtttcttcgggatgaacatgttgaacaaatagtaacaaattgtcctcagttggaatcgttgaagctatgtgagttttgtggttttcatcgcttacatataacttctccaaaatgtaggagtctgcaattgattgatcaagcccatcctgatggagattggggtccatttggaggtgattgttccttcgaaatagttgccccatatattcaacatttaaagatttcggggcattttgataacgtggaaattagacttggggacctttcatctttagtccacgctgatcttactttctctgttgatgttgtatttgacaaaaccgtggcacttctcttggcaagtgtacgttgtgctaatgagctaatgatcccatgctggtttatcgagatgatttatgtgtcggtgttagaaaaagagaaagatgttncattgctgatgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="34457" stop="33245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34157" g_stop="33559" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E419978" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.916" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E419978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34157" e_stop="33559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAATTGACAAGTGGCTTGAAATTGTTTTGAAGAAAAAAGTGGAGGATCTTGACCTGGAAATATGGTATTATGATCAAAGCCCCTATGTCTTGCCACAAGTTCTCTGCAACAACTCATCCATTGTAAAATTTAATTGCGAGTTTTGCAGAATACCAGAAGAATGTGTACTAAACTGGACATCCCTGAAGAGTTTGACACTAACCTATTTGTTTCTTCGGGACGAACATGTTGAACAAATAGTAACAAATTGTCCTCAGTTGGAATTGTTGAAGCTATGTGAGTTTTGTGGTTTTCATCGCTTACATATAACTTCTCCAAAATGTAGGAGTCTGCAATTGATTGATCATGCCCATCCTGATGGAGATTGGGGTCCATTTGGCGGTGATTGTTCCTTCGAAGTAGTTGCCCCATATATTCAACATCTAAAGATTTCGGGGCATTTTGATAATGTGGAAATAAGACTTGGGGACCTTTCATCTTTAGTCATTGCTGATCTTACTTTCTCTGTTGATATTGTATATGACAATACCGTGGAACTTCTCTTGGCAAGTGTACGTTGTGCTAATGAGCTAATGATCCCATGCTGGTTTATCGAG</genome_strand>
        <mrna_strand>CCAAAATTGACAAGTGGCTTGAAATTGCTTTAAAGAAAAAAGTGGAGGATCTTGACCTGGAAATATGGTATTATGATCAAAACCCCTATGTCTTGCCACAAGTTCTCTGCAACAACTCATCCATTGTAAAGTTTAATTGCGAGTTTTGCAGAATACCAGAAGAATGTGTACTAAATTGGACATCCCTGAAGAGTTTGACACTAACCTATTTGTTTCTTCGGGATGAACATGTTGAACAAATAGTAACAAATTGTCCTCAGTTGGAATCGTTGAAGCTATGTGAGTTTTGTGGTTTTCATCGCTTACATATAACTTCTCCAAAATGTAGGAGTCTGCAATTGATTGATCAAGCCCATCCTGATGGAGATTGGGGTCCATTTGGAGGTGATTGTTCCTTCGAAATAGTTGCCCCATATATTCAACATTTAAAGATTTCGGGGCATTTTGATAACGTGGAAATTAGACTTGGGGACCTTTCATCTTTAGTCCACGCTGATCTTACTTTCTCTGTTGATGTTGTATTTGACAAAACCGTGGCACTTCTCTTGGCAAGTGTACGTTGTGCTAATGAGCTAATGATCCCATGCTGGTTTATCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E417166" ref_strand="+" ref_description="SGN-E417166 [STM-24-L10]">
      <seq>ccaaaattgacaagtggcttgaaattgctttaaagaaaaaagtggaggatcttgacctggaaatatggtattatgatcaaaacccctatgtcttgccacaagttctctgcaacaactcatccattgtaaagtttaattgcgagttttgcagaataccagaagaatgtgtactaaattggacatccctgaagagtttgacactaacctatttgtttcttcgggatgaacatgttgaacaaatagtaacaaattgtcctcagttggaatcgttgaagctatgtgagttttgtggttttcatcgcttacatataacttctccaaaatgtaggagtctgcaattgattgatcaagcccatcctgatggagattggggtccatttggaggtgattgttccttcgaaatagttgccccatatattcaacatttaaagatttcggggcattttgataacgtggaaattagacttggggacctttcatctttagtccacgctgatcttactttctctggtgatgttggatttgacaaaaccgtggcacttctcttggcaagtgtacgttgtgctaatgagctaatgatcccatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="34457" stop="33270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34157" g_stop="33570" g_length="588"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E417166" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E417166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34157" e_stop="33570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAATTGACAAGTGGCTTGAAATTGTTTTGAAGAAAAAAGTGGAGGATCTTGACCTGGAAATATGGTATTATGATCAAAGCCCCTATGTCTTGCCACAAGTTCTCTGCAACAACTCATCCATTGTAAAATTTAATTGCGAGTTTTGCAGAATACCAGAAGAATGTGTACTAAACTGGACATCCCTGAAGAGTTTGACACTAACCTATTTGTTTCTTCGGGACGAACATGTTGAACAAATAGTAACAAATTGTCCTCAGTTGGAATTGTTGAAGCTATGTGAGTTTTGTGGTTTTCATCGCTTACATATAACTTCTCCAAAATGTAGGAGTCTGCAATTGATTGATCATGCCCATCCTGATGGAGATTGGGGTCCATTTGGCGGTGATTGTTCCTTCGAAGTAGTTGCCCCATATATTCAACATCTAAAGATTTCGGGGCATTTTGATAATGTGGAAATAAGACTTGGGGACCTTTCATCTTTAGTCATTGCTGATCTTACTTTCTCTGTTGATATTGTATATGACAATACCGTGGAACTTCTCTTGGCAAGTGTACGTTGTGCTAATGAGCTAATGATCCCATGCT</genome_strand>
        <mrna_strand>CCAAAATTGACAAGTGGCTTGAAATTGCTTTAAAGAAAAAAGTGGAGGATCTTGACCTGGAAATATGGTATTATGATCAAAACCCCTATGTCTTGCCACAAGTTCTCTGCAACAACTCATCCATTGTAAAGTTTAATTGCGAGTTTTGCAGAATACCAGAAGAATGTGTACTAAATTGGACATCCCTGAAGAGTTTGACACTAACCTATTTGTTTCTTCGGGATGAACATGTTGAACAAATAGTAACAAATTGTCCTCAGTTGGAATCGTTGAAGCTATGTGAGTTTTGTGGTTTTCATCGCTTACATATAACTTCTCCAAAATGTAGGAGTCTGCAATTGATTGATCAAGCCCATCCTGATGGAGATTGGGGTCCATTTGGAGGTGATTGTTCCTTCGAAATAGTTGCCCCATATATTCAACATTTAAAGATTTCGGGGCATTTTGATAACGTGGAAATTAGACTTGGGGACCTTTCATCTTTAGTCCACGCTGATCTTACTTTCTCTGGTGATGTTGGATTTGACAAAACCGTGGCACTTCTCTTGGCAAGTGTACGTTGTGCTAATGAGCTAATGATCCCATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E445428" ref_strand="+" ref_description="SGN-E445428 [cSTA-45-B21]">
      <seq>ccaaaattgacaagtggcttgaaattgctttaaagaaaaaagtggaggatcttgacctggaaatatggtattatgatcaaaacccctatgtcttgccacaagttctctgcaacaactcatccattgtaaagtttaattgcgagttttgcagaataccagaagaatgtgtactaaattggacatccctgaagagtttgacactaacctatttgtttcttcgggatgaacatgttgaacaaatagtaacaaattgtcctcagttggaatcgttgaagctatgtgagttttgtggttttcatcgcttacatataacttctccaaaatgtaggagtctgcaattgattgatcaagcccatcctgatggagattggggtccatttggaggtgattgttccttcgaaatagttgccccatatattcaacatttaaagatttcggggcattttgataacgtggaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="34457" stop="33398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34157" g_stop="33697" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E445428" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34157" e_stop="33697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAATTGACAAGTGGCTTGAAATTGTTTTGAAGAAAAAAGTGGAGGATCTTGACCTGGAAATATGGTATTATGATCAAAGCCCCTATGTCTTGCCACAAGTTCTCTGCAACAACTCATCCATTGTAAAATTTAATTGCGAGTTTTGCAGAATACCAGAAGAATGTGTACTAAACTGGACATCCCTGAAGAGTTTGACACTAACCTATTTGTTTCTTCGGGACGAACATGTTGAACAAATAGTAACAAATTGTCCTCAGTTGGAATTGTTGAAGCTATGTGAGTTTTGTGGTTTTCATCGCTTACATATAACTTCTCCAAAATGTAGGAGTCTGCAATTGATTGATCATGCCCATCCTGATGGAGATTGGGGTCCATTTGGCGGTGATTGTTCCTTCGAAGTAGTTGCCCCATATATTCAACATCTAAAGATTTCGGGGCATTTTGATAATGTGGAAATA</genome_strand>
        <mrna_strand>CCAAAATTGACAAGTGGCTTGAAATTGCTTTAAAGAAAAAAGTGGAGGATCTTGACCTGGAAATATGGTATTATGATCAAAACCCCTATGTCTTGCCACAAGTTCTCTGCAACAACTCATCCATTGTAAAGTTTAATTGCGAGTTTTGCAGAATACCAGAAGAATGTGTACTAAATTGGACATCCCTGAAGAGTTTGACACTAACCTATTTGTTTCTTCGGGATGAACATGTTGAACAAATAGTAACAAATTGTCCTCAGTTGGAATCGTTGAAGCTATGTGAGTTTTGTGGTTTTCATCGCTTACATATAACTTCTCCAAAATGTAGGAGTCTGCAATTGATTGATCAAGCCCATCCTGATGGAGATTGGGGTCCATTTGGAGGTGATTGTTCCTTCGAAATAGTTGCCCCATATATTCAACATTTAAAGATTTCGGGGCATTTTGATAACGTGGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E440674" ref_strand="+" ref_description="SGN-E440674 [cSTA-18-E9]">
      <seq>ccaaaattgacaagtggcttgaaattgctttaaagaaaaaagtggaggatcttgacctggaaatatggtattatgatcaaaacccctatgtcttgccacaagttctctgcaacaactcatccattgtaaagtttaattgcgagttttgcagaataccagaagaatgtgtactaaattggacatccctgaagagtttgacactaacctatttgtttcttcgggatgaacatgttgaacaaatagtaacaaattgtcctcagttggaatcgttgaagctatgtgagttttgtggttttcatcgcttacatataacttctccaaaatgtaggagtctgcaattgattgatcaagcccatcctgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="34457" stop="33494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34157" g_stop="33794" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E440674" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34157" e_stop="33794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAATTGACAAGTGGCTTGAAATTGTTTTGAAGAAAAAAGTGGAGGATCTTGACCTGGAAATATGGTATTATGATCAAAGCCCCTATGTCTTGCCACAAGTTCTCTGCAACAACTCATCCATTGTAAAATTTAATTGCGAGTTTTGCAGAATACCAGAAGAATGTGTACTAAACTGGACATCCCTGAAGAGTTTGACACTAACCTATTTGTTTCTTCGGGACGAACATGTTGAACAAATAGTAACAAATTGTCCTCAGTTGGAATTGTTGAAGCTATGTGAGTTTTGTGGTTTTCATCGCTTACATATAACTTCTCCAAAATGTAGGAGTCTGCAATTGATTGATCATGCCCATCCTGATGG</genome_strand>
        <mrna_strand>CCAAAATTGACAAGTGGCTTGAAATTGCTTTAAAGAAAAAAGTGGAGGATCTTGACCTGGAAATATGGTATTATGATCAAAACCCCTATGTCTTGCCACAAGTTCTCTGCAACAACTCATCCATTGTAAAGTTTAATTGCGAGTTTTGCAGAATACCAGAAGAATGTGTACTAAATTGGACATCCCTGAAGAGTTTGACACTAACCTATTTGTTTCTTCGGGATGAACATGTTGAACAAATAGTAACAAATTGTCCTCAGTTGGAATCGTTGAAGCTATGTGAGTTTTGTGGTTTTCATCGCTTACATATAACTTCTCCAAAATGTAGGAGTCTGCAATTGATTGATCAAGCCCATCCTGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206193" ref_strand="+" ref_description="SGN-E206193 [cLEC-29-K21]">
      <seq>taaaggccagattcttgaaaacccacctcaggaaaaagtgaacattgagacagaaagtgaagaaactggcattgattggatcagcgagctacctgacgctctaattgtacaaattctctctctattgcccatacaagatgctttcagaacatctgttctctctaaacgttggcaatacccctggacttctatagacaaccttatttttgacaaccgaaataccaattggtccaatagagagaatgtgattaataagttcatttccttcacagacaatgtactacctctcctttgctgctctaatattaaaaagttctgtctatatttccgattttgccttgttgcttcttatagttccaaaattgacaagtggcttgaaattgttttgaagaaaaaagtggaggatcttgacctggaaatatggtattatgatcaaagcccctatgtcttgccacaagttctctgcaacaactcatccattgtaaaatttaattgcgagttttgcagaataccagaagaatgtgtactaaactggacatccctgaagagtttgacactaacctatttgtttcttcgggacgaacatgttgaacaaatagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="34813" stop="33614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34513" g_stop="33914" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E206193" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34513" e_stop="33914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGCCAGATTCTTGAAAACCCACCTCAGGAAAAAGTGAACATTGAGACAGAAAGTGAAGAAACTGGCATTGATTGGATCAGCGAGCTACCTGACGCTCTAATTGTACAAATTCTCTCTCTATTGCCCATACAAGATGCTTTCAGAACATCTGTTCTCTCTAAACGTTGGCAATACCCCTGGACTTCTATAGACAACCTTATTTTTGACAACCGAAATACCAATTGGTCCAATAGAGAGAATGTGATTAATAAGTTCATTTCCTTCACAGACAATGTACTACCTCTCCTTTGCTGCTCTAATATTAAAAAGTTCTGTCTATATTTCCGATTTTGCCTTGTTGCTTCTTATAGTTCCAAAATTGACAAGTGGCTTGAAATTGTTTTGAAGAAAAAAGTGGAGGATCTTGACCTGGAAATATGGTATTATGATCAAAGCCCCTATGTCTTGCCACAAGTTCTCTGCAACAACTCATCCATTGTAAAATTTAATTGCGAGTTTTGCAGAATACCAGAAGAATGTGTACTAAACTGGACATCCCTGAAGAGTTTGACACTAACCTATTTGTTTCTTCGGGACGAACATGTTGAACAAATAGT</genome_strand>
        <mrna_strand>TAAAGGCCAGATTCTTGAAAACCCACCTCAGGAAAAAGTGAACATTGAGACAGAAAGTGAAGAAACTGGCATTGATTGGATCAGCGAGCTACCTGACGCTCTAATTGTACAAATTCTCTCTCTATTGCCCATACAAGATGCTTTCAGAACATCTGTTCTCTCTAAACGTTGGCAATACCCCTGGACTTCTATAGACAACCTTATTTTTGACAACCGAAATACCAATTGGTCCAATAGAGAGAATGTGATTAATAAGTTCATTTCCTTCACAGACAATGTACTACCTCTCCTTTGCTGCTCTAATATTAAAAAGTTCTGTCTATATTTCCGATTTTGCCTTGTTGCTTCTTATAGTTCCAAAATTGACAAGTGGCTTGAAATTGTTTTGAAGAAAAAAGTGGAGGATCTTGACCTGGAAATATGGTATTATGATCAAAGCCCCTATGTCTTGCCACAAGTTCTCTGCAACAACTCATCCATTGTAAAATTTAATTGCGAGTTTTGCAGAATACCAGAAGAATGTGTACTAAACTGGACATCCCTGAAGAGTTTGACACTAACCTATTTGTTTCTTCGGGACGAACATGTTGAACAAATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E557873" ref_strand="+" ref_description="SGN-E557873 [16741]">
      <seq>atgaaccaatttggggaggtctcaattctcatctcaaattaattttgggttctagggtttcaaattcgattattcaccattgtcgacgaaacacgatgggttaacttctgttgagaggcgatttatttgttcttcctggtacagtagttgtttagcatataggtctctcattcttgcaatgaacttggaaaggaaatgtagtgtgacaaccatgggcgatcaagaccaatcccctgggcagttctggtgatgatggacattctaaaggccagattcttgaaaacctacctcaggaaaaagtgaacattgagacggaatgtgaagaaactggcattgattggatcagtgagctacctgacgctcttattgtacaaattctttctcaaatgcccatacaggatgccttcaaaacatctattctctctaaacgttggcaatacccctggacttctatagacaaccttatttttgataacaggaataccaattggtccgatagagagaatgtgattaataagttcatttccttcacaggacaatgtactaactctcctttgctggtctaaaattaaaaagttctgtctatatttccgattttggcttggttgcttcttatagttccaaaattgacaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="35605" stop="33842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35305" g_stop="35169" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35168" i_stop="34639" i_length="530">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34638" g_stop="34142" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="636" r_length="498" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E557873" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35305" e_stop="35169"/>
          <exon e_start="34638" e_stop="34142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAAACAATTTGGGGAGG-CTCAATTATCATCACGAGTAAATTTTGGGTTCTAGGGTTTCAAATTTGATCATTCACCATTGTCGACGAAACACGATGGTTTAACTTCTGTTGAGAGGCGATTTATTTGTTCTTCCTGGTACGACTCCCTTCATTTTTTACCCATATAATTTTAGGCTTCTGCTACTTTTATGTTTGAGTTAACTTGACATCAATTCAGTATTCCATAGAGAAGAAAAATAGAATGGGTTAGTTAGATGTTACTGATAAACTTAAAAAGAGCTCGAATTTTAATTTAAGAGTATAGAGTAGTTGATTTGTAAAATTCAGATGCGAACTTAGTATTTCTAGAACATGACGCACCACTAAAAAAAATAAATAAAAAAATGTATTAATTGGTAATTGATTGATTCCTAGTGCTCTAGGTAATTAATTCAACATTCAATCAAGTGAACTGGGCTTCATGTGCCCCTTTTAAGGCTATAAATTTGCCACTGGTCAAACCAACGTAGATAGAGAAATGATAAATGGTCGGAGTAGGTACATGAGTAGTTTAGTATATAGGTCTCTCATTCTTGTAGGGAGCATTTTTCCAGAGCAGGAATCAAGGAGTATCAGACTTTTGGTTAAGATCAAAATTTATTAATATTTGCTCGTTTCTCCGCGCAGGTACAGCAGTGGTTAAGCATATAGAGGTCTCTCATTCTTGCAATGAACTCGGAAAGGAAATGTAGTGTGACAACCATGGGCGACCAAGACCAATCTCCT-AGCAGTTCTGGTGATGATGGACATTCTAAAGGCCAGATTCTTGAAAACCCACCTCAGGAAAAAGTGAACATTGAGACAGAAAGTGAAGAAACTGGCATTGATTGGATCAGCGAGCTACCTGACGCTCTAATTGTACAAATTCTCTCTCTATTGCCCATACAAGATGCTTTCAGAACATCTGTTCTCTCTAAACGTTGGCAATACCCCTGGACTTCTATAGACAACCTTATTTTTGACAACCGAAATACCAATTGGTCCAATAGAGAGAATGTGATTAATAAGTTCATTTCCTTCACA-GACAATGTACTACCTCTCCTTTGCTGCTCTAATATTAAAAAGTTCTGTCTATATTTCCGATTTTGCCTT-GTTGCTTCTTATAGTTCCAAAATTGACAAGTG</genome_strand>
        <mrna_strand>ATGAACCAATTTGGGGAGGTCTCAATTCTCATCTCAAATTAATTTTGGGTTCTAGGGTTTCAAATTCGATTATTCACCATTGTCGACGAAACACGATGGGTTAACTTCTGTTGAGAGGCGATTTATTTGTTCTTCCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAGTAGTTGTTTAGCATAT--AGGTCTCTCATTCTTGCAATGAACTTGGAAAGGAAATGTAGTGTGACAACCATGGGCGATCAAGACCAATCCCCTGGGCAGTTCTGGTGATGATGGACATTCTAAAGGCCAGATTCTTGAAAACCTACCTCAGGAAAAAGTGAACATTGAGACGGAATGTGAAGAAACTGGCATTGATTGGATCAGTGAGCTACCTGACGCTCTTATTGTACAAATTCTTTCTCAAATGCCCATACAGGATGCCTTCAAAACATCTATTCTCTCTAAACGTTGGCAATACCCCTGGACTTCTATAGACAACCTTATTTTTGATAACAGGAATACCAATTGGTCCGATAGAGAGAATGTGATTAATAAGTTCATTTCCTTCACAGGACAATGTACTAACTCTCCTTTGCTGGTCTAAAATTAAAAAGTTCTGTCTATATTTCCGATTTTGGCTTGGTTGCTTCTTATAGTTCCAAAATTGACAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E256706" ref_strand="+" ref_description="SGN-E256706 [cLEG-40-N17]">
      <seq>aggggtgcgtttggcggcaactatataaaacaatttggggaggctcagttatcatcacgagtaaatcttgggttctagggtttcaaatttgatcattcaccattgtcgacgaaacacgatggtttaacttctgttgagaggcgatttatttgttcttcctggtacagcagtggctaagcatatagaggtctctcattcttgcaatgaactcggaaaggaaatgtagtgtgacaaccatgggcgaccaagaccaatctcctagcagttctggtgatgatggacattctaaaggccagattcttgaaaacccacctcacgaaaaagtgaacattgagacagaaagtgaagaaactggcattgattggatcagcgagctacctgacgctctaattgtacaaattctctctctattgcccatacaagatgctttcacaacatctgttctctctaaacgttggcaatacccctggacttctatagacaaccttatttttgacaaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="35629" stop="33998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35329" g_stop="35169" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35168" i_stop="34639" i_length="530">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34638" g_stop="34298" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="502" r_length="341" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E256706" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35329" e_stop="35169"/>
          <exon e_start="34638" e_stop="34298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGGTGCGTTTGGCGGCAACTATATAAAACAATTTGGGGAGGCTCAATTATCATCACGAGTAAATTTTGGGTTCTAGGGTTTCAAATTTGATCATTCACCATTGTCGACGAAACACGATGGTTTAACTTCTGTTGAGAGGCGATTTATTTGTTCTTCCTGGTACGACTCCCTTCATTTTTTACCCATATAATTTTAGGCTTCTGCTACTTTTATGTTTGAGTTAACTTGACATCAATTCAGTATTCCATAGAGAAGAAAAATAGAATGGGTTAGTTAGATGTTACTGATAAACTTAAAAAGAGCTCGAATTTTAATTTAAGAGTATAGAGTAGTTGATTTGTAAAATTCAGATGCGAACTTAGTATTTCTAGAACATGACGCACCACTAAAAAAAATAAATAAAAAAATGTATTAATTGGTAATTGATTGATTCCTAGTGCTCTAGGTAATTAATTCAACATTCAATCAAGTGAACTGGGCTTCATGTGCCCCTTTTAAGGCTATAAATTTGCCACTGGTCAAACCAACGTAGATAGAGAAATGATAAATGGTCGGAGTAGGTACATGAGTAGTTTAGTATATAGGTCTCTCATTCTTGTAGGGAGCATTTTTCCAGAGCAGGAATCAAGGAGTATCAGACTTTTGGTTAAGATCAAAATTTATTAATATTTGCTCGTTTCTCCGCGCAGGTACAGCAGTGGTTAAGCATATAGAGGTCTCTCATTCTTGCAATGAACTCGGAAAGGAAATGTAGTGTGACAACCATGGGCGACCAAGACCAATCTCCTAGCAGTTCTGGTGATGATGGACATTCTAAAGGCCAGATTCTTGAAAACCCACCTCAGGAAAAAGTGAACATTGAGACAGAAAGTGAAGAAACTGGCATTGATTGGATCAGCGAGCTACCTGACGCTCTAATTGTACAAATTCTCTCTCTATTGCCCATACAAGATGCTTTCAGAACATCTGTTCTCTCTAAACGTTGGCAATACCCCTGGACTTCTATAGACAACCTTATTTTTGACAACCG</genome_strand>
        <mrna_strand>AGGGGTGCGTTTGGCGGCAACTATATAAAACAATTTGGGGAGGCTCAGTTATCATCACGAGTAAATCTTGGGTTCTAGGGTTTCAAATTTGATCATTCACCATTGTCGACGAAACACGATGGTTTAACTTCTGTTGAGAGGCGATTTATTTGTTCTTCCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAGCAGTGGCTAAGCATATAGAGGTCTCTCATTCTTGCAATGAACTCGGAAAGGAAATGTAGTGTGACAACCATGGGCGACCAAGACCAATCTCCTAGCAGTTCTGGTGATGATGGACATTCTAAAGGCCAGATTCTTGAAAACCCACCTCACGAAAAAGTGAACATTGAGACAGAAAGTGAAGAAACTGGCATTGATTGGATCAGCGAGCTACCTGACGCTCTAATTGTACAAATTCTCTCTCTATTGCCCATACAAGATGCTTTCACAACATCTGTTCTCTCTAAACGTTGGCAATACCCCTGGACTTCTATAGACAACCTTATTTTTGACAACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338737" ref_strand="+" ref_description="SGN-E338737 [cTOE-21-C4]">
      <seq>tcacgagtaaattttgggttctagggtttcaaatttgatcattcaccattgtcgacgaaacacgatggtttaacttctgttgagaggcgatttatttgttcttcctggtacagcagtggttaagcatatagaggtctctcattcttgcaatgaactcggaaaggaaatgtagtgtgacaaccatgggcgaccaagaccaatctcctagcagttctggtgatgatggacattctaaaggccagattcttgaaaacccacctcaggaaaaagtgaacattgagacagaaagtgaagaaactggcattgattggatcagcgagctacctgacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="35575" stop="34115"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35275" g_stop="35169" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35168" i_stop="34639" i_length="530">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34638" g_stop="34415" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="331" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E338737" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35275" e_stop="35169"/>
          <exon e_start="34638" e_stop="34415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAGTAAATTTTGGGTTCTAGGGTTTCAAATTTGATCATTCACCATTGTCGACGAAACACGATGGTTTAACTTCTGTTGAGAGGCGATTTATTTGTTCTTCCTGGTACGACTCCCTTCATTTTTTACCCATATAATTTTAGGCTTCTGCTACTTTTATGTTTGAGTTAACTTGACATCAATTCAGTATTCCATAGAGAAGAAAAATAGAATGGGTTAGTTAGATGTTACTGATAAACTTAAAAAGAGCTCGAATTTTAATTTAAGAGTATAGAGTAGTTGATTTGTAAAATTCAGATGCGAACTTAGTATTTCTAGAACATGACGCACCACTAAAAAAAATAAATAAAAAAATGTATTAATTGGTAATTGATTGATTCCTAGTGCTCTAGGTAATTAATTCAACATTCAATCAAGTGAACTGGGCTTCATGTGCCCCTTTTAAGGCTATAAATTTGCCACTGGTCAAACCAACGTAGATAGAGAAATGATAAATGGTCGGAGTAGGTACATGAGTAGTTTAGTATATAGGTCTCTCATTCTTGTAGGGAGCATTTTTCCAGAGCAGGAATCAAGGAGTATCAGACTTTTGGTTAAGATCAAAATTTATTAATATTTGCTCGTTTCTCCGCGCAGGTACAGCAGTGGTTAAGCATATAGAGGTCTCTCATTCTTGCAATGAACTCGGAAAGGAAATGTAGTGTGACAACCATGGGCGACCAAGACCAATCTCCTAGCAGTTCTGGTGATGATGGACATTCTAAAGGCCAGATTCTTGAAAACCCACCTCAGGAAAAAGTGAACATTGAGACAGAAAGTGAAGAAACTGGCATTGATTGGATCAGCGAGCTACCTGACGC</genome_strand>
        <mrna_strand>TCACGAGTAAATTTTGGGTTCTAGGGTTTCAAATTTGATCATTCACCATTGTCGACGAAACACGATGGTTTAACTTCTGTTGAGAGGCGATTTATTTGTTCTTCCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAGCAGTGGTTAAGCATATAGAGGTCTCTCATTCTTGCAATGAACTCGGAAAGGAAATGTAGTGTGACAACCATGGGCGACCAAGACCAATCTCCTAGCAGTTCTGGTGATGATGGACATTCTAAAGGCCAGATTCTTGAAAACCCACCTCAGGAAAAAGTGAACATTGAGACAGAAAGTGAAGAAACTGGCATTGATTGGATCAGCGAGCTACCTGACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E483808" ref_strand="+" ref_description="SGN-E483808 [cSTE-11-C3]">
      <seq>aaaatacaaagggcaaagcaatttttctggcttcatcactacagccggattctatcatctcagggaaatggctagctctctccgacgaatagcgacgcattcctctcaagccgcctggagatcctctctgacgccgatatggagacaatttgcatcagaagcgttggtcgaaatcaaacccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctcacctgctcggactgctagtcaacagggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagcacttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggctgggaatatacggttaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaacttcaagtggaagggacctcccaagacagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtagatgttctaccccaatgccttgcatttttttttctttttcttcaccttctctaaagttgggcagatttccttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37488" stop="42588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37788" g_stop="38017" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="321" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="451" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="481" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42288" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="654" r_length="173" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E483808" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37788" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATACAAAGGGCAAAGTAA--TATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTA-CCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTG</genome_strand>
        <mrna_strand>AAAATACAAAGGGCAAAGCAATTTTTCTGGCTTCATCACTACAGCCGGATTCTATCATCTCAGGGAAATGGCTAGCTCTCTCCGACGAATAGCGACGCATTCCTCTCAAGCCGCCTGGAGATCCTCTCTGACGCCGATATGGAGACAATTTGCATCAGAAGCGTTGGTCGAAATCAAACCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCACCTGCTCGGACTGCTAGTCAACAGGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCACTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGCTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTCAAGTGGAAGGGACCTCCCAAGACAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTAGATGTTCTACCCCAATGCCTTGCATT-T-TTTTTTCTTTTTCTTCACCTTCTCTAAAGTTGGGCAGATTTCCTTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453644" ref_strand="+" ref_description="SGN-E453644 [cSTS-20-N13]">
      <seq>tacaaagggcaaagcaatttttctggcttcatcactacagccggattctatcatctcagggaaatggctagctctctccgacgaatagcgacgcattcctctcaagccgcctggagatcctctctgacgccgatatggagacaatttgcatcagaagcgttggtcgaaatcaaacccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctcacctgctcggactgctagtcaacagggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagcacttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggctgggaatatacggttaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaacttcaagtggaagggacctcccaagacagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtagatgttctaccccaatgccttgcatttttttttctttttcttcaccttctctaaagttgggcagatttccttcatgaaagatttaataaatcaaacttatgaaaaatccacaagtacatgtaatggtctaaaacctttatgaagcaatttccgggtgttatacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37509" stop="42674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37792" g_stop="38017" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="317" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="447" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="477" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42380" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="740" r_length="263" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E453644" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37792" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAAGGGCAAAGTAA--TATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTA-CCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATG-AAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTTG</genome_strand>
        <mrna_strand>TACAAAGGGCAAAGCAATTTTTCTGGCTTCATCACTACAGCCGGATTCTATCATCTCAGGGAAATGGCTAGCTCTCTCCGACGAATAGCGACGCATTCCTCTCAAGCCGCCTGGAGATCCTCTCTGACGCCGATATGGAGACAATTTGCATCAGAAGCGTTGGTCGAAATCAAACCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCACCTGCTCGGACTGCTAGTCAACAGGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCACTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGCTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTCAAGTGGAAGGGACCTCCCAAGACAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTAGATGTTCTACCCCAATGCCTTGCATT-T-TTTTTTCTTTTTCTTCACCTTCTCTAAAGTTGGGCAGATTTCCTTCATGAAAGATTTAATAAATCAAACTTATGAAAAATCCACAAGTACATGTAATGGTCTAAAACCTTTATGAAGCAATTTCCGGGTG--T-TATACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E402792" ref_strand="+" ref_description="SGN-E402792 [PPC-8-B6]">
      <seq>gggcaaagtaatttttctggcttcatcacttcagccggattctatcatctcagggaaatggctagctctctccgacgaatagcgacgcattcctctcaagccgcctggagatcctctctgacgccgatatggagacaatttacgtcagaagcgttggtcgaaatcaaacccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtaattttctcacctgctcggactgctagtcaacagggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagcacttagttttgagagtgaagaagctgcaaaagcatttgctgaaaagcatggctgggaatatacggttaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaacttcaagtggaagggacctcccaagacagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctaccccaatgccttgcattttttttctttttcttcaccttctctaaagttgggcagatttccttcatgaaggatttaataaatcatacttatgaaaaatccacaattacatgtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37509" stop="42635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37798" g_stop="38017" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="311" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="441" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="471" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42335" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="691" r_length="220" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E402792" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E402792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37798" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCAAAGTAA--TATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTA-CCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATG-AAAATCCACAAGTACATGCAAT</genome_strand>
        <mrna_strand>GGGCAAAGTAATTTTTCTGGCTTCATCACTTCAGCCGGATTCTATCATCTCAGGGAAATGGCTAGCTCTCTCCGACGAATAGCGACGCATTCCTCTCAAGCCGCCTGGAGATCCTCTCTGACGCCGATATGGAGACAATTTACGTCAGAAGCGTTGGTCGAAATCAAACCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTAATTTTCTCACCTGCTCGGACTGCTAGTCAACAGGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCACTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTTGCTGAAAAGCATGGCTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTCAAGTGGAAGGGACCTCCCAAGACAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCCCAATGCCTTGCATT-T-TTTT-TCTTTTTCTTCACCTTCTCTAAAGTTGGGCAGATTTCCTTCATGAAGGATTTAATAAATCATACTTATGAAAAATCCACAATTACATGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E559120" ref_strand="+" ref_description="SGN-E559120 [18568]">
      <seq>ggcaaagcaatttttctggcttcatcactacagcggattctatcatctcagggcaaatggctagctctctccgacgaatagcgacgcattcctctcaagccgctgtgagatcctctctgacgccgatatggagacaatttgcatcagaagcgttggtcgaaatcaaacccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctcacctgctcggactgctagtcaacaggggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagcacttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggctgggaatatacggttaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaacttcaagtggaagggacctcccaagacagcagaataatttattttctacttcaattcaagtacttggaggtgcttgtagatgttctaccccaatgccttgcatttttgttctttttcttcaacttctctaaagttgggcagatttccttcatgaaggatttataaatcaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37509" stop="42608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37799" g_stop="38017" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="311" r_length="90" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="441" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="471" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42308" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="663" r_length="192" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E559120" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37799" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAAGTAA-TAT-CTGGCTTCATCACTTCGGCCGGATTCTATCATCTCA-GGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACA-AGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTT-GAGGTGCTTGTGGATGTTCTA-CCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAAC</genome_strand>
        <mrna_strand>GGCAAAGCAATTTTTCTGGCTTCATCACTACAG-CGGATTCTATCATCTCAGGGCAAATGGCTAGCTCTCTCCGACGAATAGCGACGCATTCCTCTCAAGCCGCTGTGAGATCCTCTCTGACGCCGATATGGAGACAATTTGCATCAGAAGCGTTGGTCGAAATCAAACCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCACCTGCTCGGACTGCTAGTCAACAGGGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCACTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGCTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTCAAGTGGAAGGGACCTCCCAAGACAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGGAGGTGCTTGTAGATGTTCTACCCCAATGCCTTGCATT-T-TTGT-TCTTTTTCTTCAACTTCTCTAAAGTTGGGCAGATTTCCTTCATGAAGGATTT-ATAAATCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716820" ref_strand="+" ref_description="SGN-E716820 [FB18AE05]">
      <seq>gcaaagtaatatctggcttcatcacttcggccggattctatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaaacctttgtgaagcaatttccgggtgtttctgtacttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37500" stop="42681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37800" g_stop="38017" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="307" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="437" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="467" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42381" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="734" r_length="267" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E716820" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37800" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAGTAATATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTTGT</genome_strand>
        <mrna_strand>GCAAAGTAATATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E715560" ref_strand="+" ref_description="SGN-E715560 [FB14CE12]">
      <seq>gtaatatctggcttcatcacttcggccggattctatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaaacctttgtgaagcaatttccgggtgtttctgtacttgtgggacattgtgtcgtgtcaaaacactagtagccttgtttttctctccaaaagaaattagcgtgtcaaaatactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37505" stop="42756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37805" g_stop="38017" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="302" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="432" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="462" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42456" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="804" r_length="342" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E715560" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37805" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTTGTGGGACATTGTGTCGTGTCAAAACACTAGTAGCCTTGTTTTTCTCTCCAAAAGAAATTAGCGTGTCAAAATACTTA</genome_strand>
        <mrna_strand>GTAATATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTTGTGGGACATTGTGTCGTGTCAAAACACTAGTAGCCTTGTTTTTCTCTCCAAAAGAAATTAGCGTGTCAAAATACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E267318" ref_strand="+" ref_description="SGN-E267318 [cLEI-17-K1]">
      <seq>taatatctggcttcatcacttcggccggattctatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37506" stop="41147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37806" g_stop="38017" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="301" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="431" r_length="130" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E267318" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37806" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG</genome_strand>
        <mrna_strand>TAATATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311130" ref_strand="+" ref_description="SGN-E311130 [cLEZ-16-F15]">
      <seq>aatatctggcttcatcacttcggccggattctatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctggtttctttttttttttaccttctctaaagttgggcagatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37507" stop="42580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37807" g_stop="38017" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="300" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="430" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="460" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42280" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="626" r_length="166" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E311130" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37807" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCT</genome_strand>
        <mrna_strand>AATATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGGTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311430" ref_strand="+" ref_description="SGN-E311430 [cLEZ-18-O13]">
      <seq>aatatctggcttcatcacttcggccggattctatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37507" stop="41948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37807" g_stop="38017" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="300" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="430" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="460" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E311430" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37807" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAG</genome_strand>
        <mrna_strand>AATATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E614145" ref_strand="+" ref_description="SGN-E614145 [63928]">
      <seq>ttctggcttcatcacttcagccggattctatcatctcaggaaatggctagctctctccgacgaatagcgacgcattcctctcaagccgcctggcgatcttctctgacgccgatatggagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctcacctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagcacttagttttgagagtgaagaagctgcaaaagcattcgctgaaaaacatggttgggaatatacggttaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaacttcaagtggaagggacctcccaagacagcagaataatttattttctacttcgattcaagtacttgaggtgcttgtggatgttctaccccaatgccttgcattcttttttctttttctttaccttctctaaagttgggcagatttcctccttgaaggatttaataaatcaaacttatgaaaaatccacaagtacatgtaatgtctttaaacctttatgaagcaatttccgggtgttatacctgatcctaaaaaaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37511" stop="42678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37810" g_stop="38017" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="296" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="426" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="456" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42367" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="709" r_length="253" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="725" polyA_stop="736"/>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E614145" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E614145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37810" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTA-CCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAA-AATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGT</genome_strand>
        <mrna_strand>TTCTGGCTTCATCACTTCAGCCGGATTCTATCATCTCAGG-AAATGGCTAGCTCTCTCCGACGAATAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTCTGACGCCGATATGGAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCACCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCACTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAACATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTCAAGTGGAAGGGACCTCCCAAGACAGCAGAATAATTTATTTTCTACTTCGATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCCCAATGCCTTGCATTCT-TTTT-TCTTTTTCTTTACCTTCTCTAAAGTTGGGCAGATTTCCTCCTTGAAGGATTTAATAAATCAAACTTATGAAAAATCCACAAGTACATGTAATGTCTTTAAACCTTTATGAAGCAATTTCCGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E719644" ref_strand="+" ref_description="SGN-E719644 [FC08BH04]">
      <seq>atcggccgaattgacttcggccggattccattaactcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcaaatctccttcttgaaggatttaataaatcaaacttttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37521" stop="42617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37810" g_stop="38017" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="297" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="427" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="457" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42324" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="667" r_length="210" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="668" polyA_stop="705"/>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E719644" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37810" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAA</genome_strand>
        <mrna_strand>ATCGGCCGAATTGACTTCGGCCGGATTCCATTAACTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAAATCTCCTTCTTGAAGGATTTAATAAATCAAACTTTTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E418311" ref_strand="+" ref_description="SGN-E418311 [STM-27-C8]">
      <seq>cgggccccccccaatttttctggcttcatcactacagccggattctatcatctcagggaaatggctagctctctccgacgaatagcgacgcattcctctcaagccgcctggagatcctctctgacgccgatatggagacaatttgcatcagaagcgttggtcgaaatcaaacccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctcacctgctcggactgctagtcaacagggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagcacttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggctgggaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37509" stop="41131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37811" g_stop="38017" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="225" r_length="207" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="314" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40831" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="440" r_length="126" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E418311" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E418311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37811" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATA</genome_strand>
        <mrna_strand>TCTGGCTTCATCACTACAGCCGGATTCTATCATCTCAGGGAAATGGCTAGCTCTCTCCGACGAATAGCGACGCATTCCTCTCAAGCCGCCTGGAGATCCTCTCTGACGCCGATATGGAGACAATTTGCATCAGAAGCGTTGGTCGAAATCAAACCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCACCTGCTCGGACTGCTAGTCAACAGGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCACTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGCTGGGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E268072" ref_strand="+" ref_description="SGN-E268072 [cLEI-15-H22]">
      <seq>ctggcttcatcacttcggccggattctatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttcttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37512" stop="42551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37812" g_stop="38017" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="295" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="425" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="455" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42251" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="592" r_length="137" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E268072" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37812" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTT</genome_strand>
        <mrna_strand>CTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E724927" ref_strand="+" ref_description="SGN-E724927 [FC25CC03]">
      <seq>gacttcggccggattctatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcaaatctccttcttgaaggatttaataaatcaaacttttgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37523" stop="42617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37822" g_stop="38017" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="285" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="415" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="445" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42324" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="655" r_length="210" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="656" polyA_stop="677"/>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E724927" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37822" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAA</genome_strand>
        <mrna_strand>GACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAAATCTCCTTCTTGAAGGATTTAATAAATCAAACTTTTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E599843" ref_strand="+" ref_description="SGN-E599843 [52841]">
      <seq>ctacagccggattctatcatctcaggcaaatggctagctctctccgacgaatagcgacgcattcctctcaagccgcctggagatcctctctgacgccgatatggagacaatttgcatcagaagcgttggtcgaaatcaaacccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctcacctgctcggactgctagtcaacagggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagcacttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggctgggaatatacggttaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaacttcaagtggaagggacctcccaagacagcagaatactttatattctacttcaattcaagtacttgaggtgcttgtagatgttctaccccaatgccttgcattctctcatcttttacttcaccttctctaaagttgggcagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37524" stop="42552"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37824" g_stop="38017" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="283" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="413" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="443" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42278" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="606" r_length="163" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E599843" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E599843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37824" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTA-CCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGAT</genome_strand>
        <mrna_strand>CTACAGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGAATAGCGACGCATTCCTCTCAAGCCGCCTGGAGATCCTCTCTGACGCCGATATGGAGACAATTTGCATCAGAAGCGTTGGTCGAAATCAAACCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCACCTGCTCGGACTGCTAGTCAACAGGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCACTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGCTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTCAAGTGGAAGGGACCTCCCAAGACAGCAGAATACTTTATATTCTACTTCAATTCAAGTACTTGAGGTGCTTGTAGATGTTCTACCCCAATGCCTTGCATTCTCTCATC--TTTTACTTCACCTTCTCTAAAGTTGGGCAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E725113" ref_strand="+" ref_description="SGN-E725113 [FC26AD11]">
      <seq>gggcgattggcggcaaatcggccgaattacttcggccggattctatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaaacctttgtgaagcaatttccgggtgtttctgtactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37520" stop="42679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37825" g_stop="38017" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="223" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="312" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="442" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="472" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42379" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="737" r_length="265" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E725113" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37825" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTT</genome_strand>
        <mrna_strand>TTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E722903" ref_strand="+" ref_description="SGN-E722903 [FC18CG11]">
      <seq>cggccgattcccatggggatccgatgacttcggccggattctatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttcttttttttttaccttctctaaagttgggcaaatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37510" stop="42629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37825" g_stop="38017" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="221" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="310" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="440" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="470" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42330" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="685" r_length="215" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E722903" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37825" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACAT</genome_strand>
        <mrna_strand>TTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTC-TTTTTTTTTTACCTTCTCTAAAGTTGGGCAAATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302025" ref_strand="+" ref_description="SGN-E302025 [cLEX-3-K8]">
      <seq>ttcggccggattctatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37525" stop="42442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37825" g_stop="38017" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="193" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="282" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="412" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="442" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42142" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="470" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E302025" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37825" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGT</genome_strand>
        <mrna_strand>TTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E449834" ref_strand="+" ref_description="SGN-E449834 [cSTS-7-L9]">
      <seq>ccggattctatcatctcagggaaatggctagctctctccgacgaatagcgacgcattcctctcaagccgcctggagatcctctctgacgccgatatggagacaatttgcatcagaagcgttggtcgaaatcaaacccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctcacctgctcggactgctagtcaacagggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagcacttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggctgggaatatacggttaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaacttcaagtggaagggacctcccaagacagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtagatgttctaccccaatgccttgcatttttttttctttttcttcaccttctctaaagttgggcagatttccttcatgaaggatttaataaatcaaacttatgaaaaatccacaagtacatgtaatgtcttaaaacctttatgaagcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37530" stop="42658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37830" g_stop="38017" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="277" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="407" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="437" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42358" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="681" r_length="244" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E449834" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37830" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTA-CCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATG-AAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAA</genome_strand>
        <mrna_strand>CCGGATTCTATCATCTCAGGGAAATGGCTAGCTCTCTCCGACGAATAGCGACGCATTCCTCTCAAGCCGCCTGGAGATCCTCTCTGACGCCGATATGGAGACAATTTGCATCAGAAGCGTTGGTCGAAATCAAACCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCACCTGCTCGGACTGCTAGTCAACAGGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCACTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGCTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTCAAGTGGAAGGGACCTCCCAAGACAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTAGATGTTCTACCCCAATGCCTTGCATT-T-TTTTTTCTTTTTCTTCACCTTCTCTAAAGTTGGGCAGATTTCCTTCATGAAGGATTTAATAAATCAAACTTATGAAAAATCCACAAGTACATGTAATGTCTTAAAACCTTTATGAAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338077" ref_strand="+" ref_description="SGN-E338077 [cTOE-14-P8]">
      <seq>cggattctatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37531" stop="42491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37831" g_stop="38017" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="276" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="406" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="436" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42191" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="513" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E338077" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37831" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTC</genome_strand>
        <mrna_strand>CGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329934" ref_strand="+" ref_description="SGN-E329934 [cTOD-5-A14]">
      <seq>ttctatcatctcaggcaaatggctagctctctccgacgactagcgacgcgttcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37535" stop="42564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37835" g_stop="38017" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="272" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="402" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="432" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42264" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="582" r_length="150" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E329934" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37835" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCT</genome_strand>
        <mrna_strand>TTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCGTTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302372" ref_strand="+" ref_description="SGN-E302372 [cLEW-27-M2]">
      <seq>ttctatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37535" stop="42558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37835" g_stop="38017" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="272" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="402" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="432" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42258" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="576" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E302372" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37835" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACC</genome_strand>
        <mrna_strand>TTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319821" ref_strand="+" ref_description="SGN-E319821 [cTOB-12-P23]">
      <seq>tctatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37536" stop="42563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37836" g_stop="38017" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="271" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="401" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="431" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42263" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="580" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E319821" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37836" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTC</genome_strand>
        <mrna_strand>TCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342065" ref_strand="+" ref_description="SGN-E342065 [cTOF-10-P9]">
      <seq>tatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaaacctttgtgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37538" stop="42655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37838" g_stop="38017" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="269" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="399" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="429" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42355" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="670" r_length="241" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E342065" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37838" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAG</genome_strand>
        <mrna_strand>TATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345740" ref_strand="+" ref_description="SGN-E345740 [cTOF-18-L10]">
      <seq>tatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37538" stop="42643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37838" g_stop="38017" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="269" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="399" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="429" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42343" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="660" r_length="231" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E345740" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37838" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTC--TTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAA</genome_strand>
        <mrna_strand>TATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342064" ref_strand="+" ref_description="SGN-E342064 [cTOF-10-P7]">
      <seq>tatcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataatcaaacttatgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37538" stop="42617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37838" g_stop="38017" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="269" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="399" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="429" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42317" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="631" r_length="202" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E342064" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37838" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAA</genome_strand>
        <mrna_strand>TATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAAT-AATCAAACTTATGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E713914" ref_strand="+" ref_description="SGN-E713914 [FB10AA10]">
      <seq>atcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37539" stop="42617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37839" g_stop="38017" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="268" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="398" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="428" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42324" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="638" r_length="210" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E713914" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37839" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAA</genome_strand>
        <mrna_strand>ATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348692" ref_strand="+" ref_description="SGN-E348692 [cTOF-30-D14]">
      <seq>tcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctcttaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaaatgtcttaaaacctttgtgaagcaatncccgggtgttttctgtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37540" stop="42676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37840" g_stop="38017" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="267" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="397" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="427" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42371" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="685" r_length="258" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E348692" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37840" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGC-AATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTT</genome_strand>
        <mrna_strand>TCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTTAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAAATGTCTTAAAACCTTTGTGAAGCAATNCCCGGGTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E333951" ref_strand="+" ref_description="SGN-E333951 [cTOD-24-L1]">
      <seq>tcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttcttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaaaacctttgtgaagcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37540" stop="42658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37840" g_stop="38017" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="267" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="397" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="427" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42357" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="670" r_length="243" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E333951" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37840" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTT-AAAACCTTTGTGAAGCA</genome_strand>
        <mrna_strand>TCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTC-TTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAAACCTTTGTGAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E303864" ref_strand="+" ref_description="SGN-E303864 [cLEX-4-G5]">
      <seq>tcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37540" stop="42617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37840" g_stop="38017" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="267" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="397" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="427" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42323" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="636" r_length="209" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E303864" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37840" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACA</genome_strand>
        <mrna_strand>TCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341612" ref_strand="+" ref_description="SGN-E341612 [cTOE-23-M21]">
      <seq>tcatctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggaccttccaaggcaggagaataatttattttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37540" stop="42482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37840" g_stop="38017" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="267" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="397" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="427" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42182" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="495" r_length="68" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E341612" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37840" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTA</genome_strand>
        <mrna_strand>TCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTTCCAAGGCAGGAGAATAATTTATTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278691" ref_strand="+" ref_description="SGN-E278691 [cLER-10-L16]">
      <seq>catctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37541" stop="42485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37841" g_stop="38017" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="266" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="396" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="426" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42185" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="497" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E278691" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37841" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42185"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTT</genome_strand>
        <mrna_strand>CATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E464014" ref_strand="+" ref_description="SGN-E464014 [cPRO-16-P13]">
      <seq>atctcagggaaatggctagctctctccgacgaatagcgacgcattcctctcaagccgcctggagatcctctctgacgccgatatggagacaatttgcatcagaagcgttggtcgaaatcaaacccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctcacctgctcggactgctagtcaacagggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagcacttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggctgggaatatacggttaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaacttcaagtggaagggacctcccaagacagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtagatgttctaccccaatgccttgcatttttttttctttttcttcaccttctctaaagttgggcagatttccttcatgaaggatttaataaatcaaacttatgaannatccacagtacatgtaatgtcttaaaacctttatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37542" stop="42654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37842" g_stop="38017" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="265" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="395" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="425" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42354" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="664" r_length="239" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E464014" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E464014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37842" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTA-CCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAA-AATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAA</genome_strand>
        <mrna_strand>ATCTCAGGGAAATGGCTAGCTCTCTCCGACGAATAGCGACGCATTCCTCTCAAGCCGCCTGGAGATCCTCTCTGACGCCGATATGGAGACAATTTGCATCAGAAGCGTTGGTCGAAATCAAACCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCACCTGCTCGGACTGCTAGTCAACAGGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCACTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGCTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTCAAGTGGAAGGGACCTCCCAAGACAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTAGATGTTCTACCCCAATGCCTTGCATT-T-TTTTTTCTTTTTCTTCACCTTCTCTAAAGTTGGGCAGATTTCCTTCATGAAGGATTTAATAAATCAAACTTATGAANNATCCAC-AGTACATGTAATGTCTTAAAACCTTTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E360837" ref_strand="+" ref_description="SGN-E360837 [cLPP-7-D20]">
      <seq>atctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgatatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctccggtattccagatgaacatcttcgtagaagggttgtgattttctcacctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagcactcagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggaaaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37542" stop="42438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37842" g_stop="38017" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="265" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="395" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="425" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42138" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="449" r_length="24" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E360837" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37842" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTT</genome_strand>
        <mrna_strand>ATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGATATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCCGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCACCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCACTCAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGAAAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E304012" ref_strand="+" ref_description="SGN-E304012 [cLEX-6-E3]">
      <seq>tctcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37543" stop="42616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37843" g_stop="38017" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="264" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="394" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="424" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42316" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="626" r_length="202" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E304012" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37843" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAA</genome_strand>
        <mrna_strand>TCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716246" ref_strand="+" ref_description="SGN-E716246 [FB16CA12]">
      <seq>ctcaggcaaatggctatctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaaacctttgtgaagcaatttccgggtgtttctgtacttgtgggacattgtgtcgtgtcaaaacactagtagccttgtttttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37544" stop="42726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37844" g_stop="38017" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="263" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="393" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="423" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42426" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="735" r_length="312" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E716246" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37844" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTTGTGGGACATTGTGTCGTGTCAAAACACTAGTAGCCTTGTTTTTCTCT</genome_strand>
        <mrna_strand>CTCAGGCAAATGGCTATCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTTGTGGGACATTGTGTCGTGTCAAAACACTAGTAGCCTTGTTTTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E437805" ref_strand="+" ref_description="SGN-E437805 [cSTA-5-I3]">
      <seq>ctcagggaaatggctagctctctccgacgaatagcgacgcattcctctcaagccgcctggagatcctctctgacgccgatatggagacaatttgcatcagaagcgttggtcgaaatcaaacccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctcacctgctcggactgctagtcaacagggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagcacttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggctgggaatatacggttaagaaacgacacacaccattgctaaagatcaagtcatatgcggacaacttcaagtggaagggacctcccaagacagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtagatgttctaccccaatgccttgcatttgtttttctttttcttcaccttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37544" stop="42563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37844" g_stop="38017" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="263" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="393" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="423" r_length="30" r_score="0.933"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42263" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="571" r_length="148" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E437805" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37844" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTA-CCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTC</genome_strand>
        <mrna_strand>CTCAGGGAAATGGCTAGCTCTCTCCGACGAATAGCGACGCATTCCTCTCAAGCCGCCTGGAGATCCTCTCTGACGCCGATATGGAGACAATTTGCATCAGAAGCGTTGGTCGAAATCAAACCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCACCTGCTCGGACTGCTAGTCAACAGGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCACTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGCTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGAAACGACACACACCATTGCTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTCAAGTGGAAGGGACCTCCCAAGACAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTAGATGTTCTACCCCAATGCCTTGCATT-TGTTTT-TCTTTTTCTTCACCTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E308823" ref_strand="+" ref_description="SGN-E308823 [cLEZ-14-J7]">
      <seq>tcaggcaaatggctagctctctgcgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttcttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37545" stop="42553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37845" g_stop="38017" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="262" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="392" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="422" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42253" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="561" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E308823" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37845" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTT</genome_strand>
        <mrna_strand>TCAGGCAAATGGCTAGCTCTCTGCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337306" ref_strand="+" ref_description="SGN-E337306 [cTOE-7-H20]">
      <seq>tcaggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37545" stop="42442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37845" g_stop="38017" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="262" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="392" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="422" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42142" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="450" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E337306" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37845" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGT</genome_strand>
        <mrna_strand>TCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E713012" ref_strand="+" ref_description="SGN-E713012 [FB06BH08]">
      <seq>caggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaaacctttgtgaagccnaaaaaaaaaaaaaaaaaaaaaaaaaaatctccggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37546" stop="42656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37846" g_stop="38017" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="261" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="391" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="421" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42354" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="661" r_length="240" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="666" polyA_stop="693"/>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E713012" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37846" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAA</genome_strand>
        <mrna_strand>CAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E407855" ref_strand="+" ref_description="SGN-E407855 [PPI-8-D16]">
      <seq>agggaaatggctagctctctccgacgaatagcgacgcattcctctcaagccgcctggcgatcttctctgacgccgatatggagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctcacctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagcacttagttttgagagtgaagaagctgcaaaagcattcgctgaaaaacatggttgggaatatacggttaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaacttcaagtggaagggacctcccaagacagcagaataatttattttctacttcgattcaagtacttgaggtgcttgtggatgttctaccccaatgccttgcattcttttttctttttctttaccttctctaaagttgggcagatttcctccttgaaggatttaataaatcaaacttatgaaaaatccacaagtacatggtaatgtctttaaaccttnatgaagcaattcccgggtgttataccctgatcctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37547" stop="42679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37847" g_stop="38017" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="260" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="390" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="420" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42367" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="674" r_length="254" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="691" polyA_stop="705"/>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E407855" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E407855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37847" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTA-CCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATG-AAAATCCACAAGTACAT-GCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGT</genome_strand>
        <mrna_strand>AGGGAAATGGCTAGCTCTCTCCGACGAATAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTCTGACGCCGATATGGAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCACCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCACTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAACATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTCAAGTGGAAGGGACCTCCCAAGACAGCAGAATAATTTATTTTCTACTTCGATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCCCAATGCCTTGCATTCT-TTTT-TCTTTTTCTTTACCTTCTCTAAAGTTGGGCAGATTTCCTCCTTGAAGGATTTAATAAATCAAACTTATGAAAAATCCACAAGTACATGGTAATGTCTTTAAACCTTNATGAAGCAATTCCCGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340764" ref_strand="+" ref_description="SGN-E340764 [cTOF-5-A6]">
      <seq>aggcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaagatttataaatcaaacttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37547" stop="42613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37847" g_stop="38017" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="260" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="390" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="420" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42313" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="618" r_length="198" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E340764" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37847" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATG</genome_strand>
        <mrna_strand>AGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAAGATTT-ATAAATCAAACTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E462229" ref_strand="+" ref_description="SGN-E462229 [cPRO-11-C17]">
      <seq>gggaaatggctagctctctccgacgaatagcgacgcattcctctcaagccgcctggcgatcttctctgacgccgatatggagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctcacctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagcacttagttttgagagtgaagaagctgcaaaagcattcgctgaaaaacatggttgggaatatacggttaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaacttcaagtggaagggacctcccaagacagcagaataatttattttctacttcgattcaagtacttgaggtgcttgtggatgttctaccccaatgccttgcattcttttttctttttctttaccttctctaaagttgggcagatttcctccttgaaggatttaataaatcaaacttatgaaaaatccacaagtacatgtaatgtctttaaacctttatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37548" stop="42654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37848" g_stop="38017" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="259" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="389" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="419" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42354" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="659" r_length="240" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E462229" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37848" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTA-CCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATG-AAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAA</genome_strand>
        <mrna_strand>GGGAAATGGCTAGCTCTCTCCGACGAATAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTCTGACGCCGATATGGAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCACCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCACTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAACATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTCAAGTGGAAGGGACCTCCCAAGACAGCAGAATAATTTATTTTCTACTTCGATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCCCAATGCCTTGCATTCT-TTTT-TCTTTTTCTTTACCTTCTCTAAAGTTGGGCAGATTTCCTCCTTGAAGGATTTAATAAATCAAACTTATGAAAAATCCACAAGTACATGTAATGTCTTTAAACCTTTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332709" ref_strand="+" ref_description="SGN-E332709 [cTOD-18-K19]">
      <seq>gcaaatggctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaaacctttgtgaaagcatttccggggtgttctgtacttgtgggacattgtgtcgtgtcaaaacctagtagccttgttttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37549" stop="42725"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37849" g_stop="38017" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="258" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="388" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="418" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42425" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="727" r_length="309" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E332709" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37849" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTTGTGGGACATTGTGTCGTGTCAAAACACTAGTAGCCTTGTTTTTCTC</genome_strand>
        <mrna_strand>GCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAAGCATTTCCGGGGTGTTCTGTACTTGTGGGACATTGTGTCGTGTCAAAAC-CTAGTAGCCTTG-TTTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E585064" ref_strand="+" ref_description="SGN-E585064 [66782]">
      <seq>taaaatggctagctctctccgacgaatagcgacgcattcctctcaagccgcctggcgatcttctctgacgccgatatggagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctcacctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagcacttagttttgagagtgaagaagctgcaaaagcattcgctgaaaaacatggttgggaatatacggttaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaacttcaagtggaagggacctcccaagacagcagaataactttattttctacttcgattcaagtacttgaggtgcttgtggatgttctaccccaatgccttgcattcttttttctttttctttaccttctctaaagttgggcagatttcctccttgaaggatttaataaatcaaacttatgaaaaatccacaaggtacatgtaatgtcttttaaacctttatgaagcaatttccggggtgttatacctgatcctacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37551" stop="42678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37849" g_stop="38017" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="258" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="388" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="418" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42365" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="672" r_length="254" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E585064" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37849" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAA-TTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTA-CCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATG-AAAATCCACAA-GTACATGCAATGTC-TTAAAACCTTTGTGAAGCAATTTCCGG</genome_strand>
        <mrna_strand>TAAAATGGCTAGCTCTCTCCGACGAATAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTCTGACGCCGATATGGAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCACCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCACTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAACATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTCAAGTGGAAGGGACCTCCCAAGACAGCAGAATAACTTTATTTTCTACTTCGATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCCCAATGCCTTGCATTCT-TTTT-TCTTTTTCTTTACCTTCTCTAAAGTTGGGCAGATTTCCTCCTTGAAGGATTTAATAAATCAAACTTATGAAAAATCCACAAGGTACATGTAATGTCTTTTAAACCTTTATGAAGCAATTTCCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E485710" ref_strand="+" ref_description="SGN-E485710 [cSTE-19-O9]">
      <seq>gaaatggctagctctctccgacgaatagcgacgcattcctctcaagccgcctggcgatcttctctgacgccgatatggagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctcacctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagcacttagttttgagagtgaagaagctgcaaaagcattcgctgaaaaacatggttgggaatatacggttaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaacttcaagtggaagggacctcccaagacagcagaataatttattttctacttcgattcaagtacttgaggtgcttgtggatgttctaccccaatgcccttgcatcttttttctttttcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37551" stop="42553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37850" g_stop="38017" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="257" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="387" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="417" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42254" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="558" r_length="141" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E485710" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37850" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTA-CCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTT</genome_strand>
        <mrna_strand>GAAATGGCTAGCTCTCTCCGACGAATAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTCTGACGCCGATATGGAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCACCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCACTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAACATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTCAAGTGGAAGGGACCTCCCAAGACAGCAGAATAATTTATTTTCTACTTCGATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCCCAATGCCCTTGCATCTTTTTTCTTTTTCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E451765" ref_strand="+" ref_description="SGN-E451765 [cSTS-14-K19]">
      <seq>atggctagctctctccgacgaatagcgacgcattcctctcaagccgcctggagatcctctctgacgccgatatggagacaatttgcatcagaagcgttggtcgaaatcaaacccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctcacctgctcggactgctagtcaacagggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagcacttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggctgggaatatacggttaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaacttcaagtggaagggacctcccaagacagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtagatgttctaccccaatgccttgcatttttttttctttttcttcaccttctctaaagttgggcagatttccttcatgaaggatttaataaatcaaactta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37553" stop="42611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37853" g_stop="38017" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="254" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="384" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="414" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42311" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="610" r_length="196" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E451765" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E451765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37853" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTA-CCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTA</genome_strand>
        <mrna_strand>ATGGCTAGCTCTCTCCGACGAATAGCGACGCATTCCTCTCAAGCCGCCTGGAGATCCTCTCTGACGCCGATATGGAGACAATTTGCATCAGAAGCGTTGGTCGAAATCAAACCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCACCTGCTCGGACTGCTAGTCAACAGGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCACTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGCTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTCAAGTGGAAGGGACCTCCCAAGACAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTAGATGTTCTACCCCAATGCCTTGCATT-T-TTTTTTCTTTTTCTTCACCTTCTCTAAAGTTGGGCAGATTTCCTTCATGAAGGATTTAATAAATCAAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341866" ref_strand="+" ref_description="SGN-E341866 [cTOF-9-F22]">
      <seq>ctagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaaacctttgtgaagaatttccgggtgtttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37557" stop="42673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37857" g_stop="38017" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="250" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="380" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="410" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42373" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="668" r_length="258" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E341866" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37857" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCT</genome_strand>
        <mrna_strand>CTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAG-AATTTCCGGGTGTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E273406" ref_strand="+" ref_description="SGN-E273406 [cLEN-3-P8]">
      <seq>tagctctctccgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttcttttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37558" stop="42647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37858" g_stop="38017" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="249" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="379" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="409" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42347" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="643" r_length="234" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E273406" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37858" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTC-TTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCT</genome_strand>
        <mrna_strand>TAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344296" ref_strand="+" ref_description="SGN-E344296 [cTOF-16-G10]">
      <seq>cgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggcgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttcttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcatacttatgaaaatccacaagtacatgcaatgtcttataacctttgtgaagcaatttccaggtgtttctgtacttgtgggacattgtgtcgtgtcaaaacactagtagcccttgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37568" stop="42721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37868" g_stop="38017" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="239" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="369" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="399" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42421" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="706" r_length="307" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E344296" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37868" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTTGTGGGACATTGTGTCGTGTCAAAACACTAGTAG-CCTTGTTTT</genome_strand>
        <mrna_strand>CGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTC-TTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCATACTTATGAAAATCCACAAGTACATGCAATGTCTTATAACCTTTGTGAAGCAATTTCCAGGTGTTTCTGTACTTGTGGGACATTGTGTCGTGTCAAAACACTAGTAGCCCTTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E344180" ref_strand="+" ref_description="SGN-E344180 [cTOF-16-F9]">
      <seq>cgacgactagcgacgcattcctctcaagccgcctggcgatcttctgtgacgccgctatgtagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctctcctgctcggactgctagtcaacaaggctctggaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttcttttttttttaccttctctaaagttgggcagatctncttcttgaaggattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37568" stop="42596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37868" g_stop="38017" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="239" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="369" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="399" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42296" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="580" r_length="181" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E344180" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37868" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTT</genome_strand>
        <mrna_strand>CGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTC-TTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTNCTTCTTGAAGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E575674" ref_strand="+" ref_description="SGN-E575674 [35336]">
      <seq>ccgatatggagacaatttgcgtcagaagcgttggtcgaaatcaagcccggagagatcggtatggtctctggtattccagatgaacatcttcgtagaagggttgtgattttctcacctgctcggactgctagtccaacaaggctctggaaaagttggccagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagcacttagttttgagagtgaacgaagctgcaaaagcattcgctgaaaaacatggttgggaatatacggttaaggaaacgacacacaccattgttacagatcaagtcatatgcggacaacttcaagtggaagggacctcccaagacagccgaataatttattttctacttccgattcaaagtacttgacagtgcttgtggattgttctacccccaaatgccttgccattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="37619" stop="42486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37919" g_stop="38017" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38018" i_stop="38924" i_length="907">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38925" g_stop="39013" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="190" r_length="91" r_score="0.944"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="321" r_length="131" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="352" r_length="31" r_score="0.867"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42115" g_stop="42202" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="442" r_length="90" r_score="0.898"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E575674" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E575674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37919" e_stop="38017"/>
          <exon e_start="38925" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGGGTATAATTTCTTTTCTTTATGTCTCTTCGCTAATATCTATTATTTTGTCAGGTCATTTAGGTGTATGAAAAACTTCATTGTAGGTTACCAATTTATTAGGGCTTCTATAGCAGATCCATGGGTTCCGCTATTTAGGGTTAGCAAATGATTTGGGAAATGGATATGGAGGATCCATATAGTTAGAATCAATTGATTTGAAATTGATATAGTTGATTGATTGCTTTTCATTTTTGCCTTTGTGAATTTATGTTACCTCTAATCCGAAGACTATTCCTTTTTAGCCCTCCTTTTGTCTTCCTCGCTCCTATTCAATGATATAGAAGAGACCATAGCTGCTTAGACACTTGTGACAAGTAAAAAGTTGTAAGTTTTCATGGTAGGGAGTAGTTTCTGCTTGGCAAGTATTAAGTTGAACTTGGACCTTCTAGAGCTTGAATTGATAAGCCTTAATATCAGACCCCAGCTTGGATTAATGCAAACTTTTTCCCCACGGAGGTTTTTCATCCATTTCTGCACAAATTTAGTTATATAGATTTCTTATCAAATCTATAATCTGATCTATATCATCTATACGAAGCTGTTTACACCAAAAAAGTAGAGATAATTCACATTTATTTCTCTCTATGTTCGTGTCTATTATTTTATTTATCCCATATTTTTCCTTTCATGTGCATGGTTGGTTTGCCCTCTCTTTCAATTTTGGTTATATACAAATGTATTGGCTTGTTCAATTTCTTCAACTCTTATATTCTCAAATTTCTTGAAGTGTTTAAATGTGCCAAATGATCCTAATCTTTCTTTTAGTACATATATTTTCTGTCTCTTCATGTGGAAAATTGCTCTCAGTTAGTGGATTAGATCTTATGCACCATGCCCCTTTTGGTAGTTAATAATGTTTGCTCACCAGGTTGTGATTTTCTCTCCTGCTCGGACTGCTAGT-CAACAAGGCTCTGGAAAAGTTGG-CAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAA-GAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAA-GAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTT-CAATTC-AAGTACTTGAG</genome_strand>
        <mrna_strand>CCGATATGGAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTTTCTCACCTGCTCGGACTGCTAGTCCAACAAGGCTCTGGAAAAGTTGGCCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCACTTAGTTTTGAGAGTGAACGAAGCTGCAAAAGCATTCGCTGAAAAACATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGGAAACGACACACACCATTGTTACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTCAAGTGGAAGGGACCTCCCAAGACAGCCGAATAATTTATTTTCTACTTCCGATTCAAAGTACTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E285980" ref_strand="+" ref_description="SGN-E285980 [cLES-13-N19]">
      <seq>gaaaagttggcagatggaaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaaacctttgtgaagcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="38671" stop="42659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38971" g_stop="39013" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="173" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="203" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42115" g_stop="42359" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="448" r_length="245" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E285980" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38971" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAAT</genome_strand>
        <mrna_strand>GAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E304150" ref_strand="+" ref_description="SGN-E304150 [cLEX-6-E3](-)">
      <seq>aaaatcaatttcatgtctacccagaaatgggagaatccattgatggggtggacatccacaggggatccatatgccaatgttggtgattcagctcttagttttgagagtgaagaagctgcaaaagcattcgctgaaaagcatggttgggaatatacggtgaagaaacgacacacaccattgttaaagatcaagtcatatgcggacaactttaagtggaagggacctcccaaggcagcagaataatttattttctacttcaattcaagtacttgaggtgcttgtggatgttctacctaatgccctgcattctgttttctttttttttttaccttctctaaagttgggcagatctccttcttgaaggatttaataaatcaaacttatgaaaatccacaagtacatgcaatgtcttaaaacctttgtgaagcaatttccgggtgtttctgtacttgtgggacattgtgtcgtgtcaaaacactagtagccttgtttttctctccaaaagaaattagcgtgtcaaaatacttacgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="38688" stop="42760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38988" g_stop="39013" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39014" i_stop="40705" i_length="1692">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40706" g_stop="40835" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="156" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40836" i_stop="41604" i_length="769">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41605" g_stop="41634" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="186" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41635" i_stop="42114" i_length="480">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42115" g_stop="42470" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="542" r_length="356" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E304150" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38988" e_stop="39013"/>
          <exon e_start="40706" e_stop="40835"/>
          <exon e_start="41605" e_stop="41634"/>
          <exon e_start="42115" e_stop="42470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAATTTCATGTCTACCCAGAAGTATGTTTTTGGATATCTTCCTTTTCTTTTCATTATTAAGAAGTTAGCATGGTTCACCAATATTAGTCTATTTTTAGCCAGCACAAAATCCTGCAGGACTTTGTACAGTAATTACAATATACAAACTCATCTACCTTATCCTTCTGTCCTGTACTAAACAAGAAGAAACAAAGAGAAAACCTTAAAGAAAGTTTTGACAAGTATAGATTATAAGTTTTTTTTCCCGTTAAAAGACTATAATTTTAATTGTGCCTAGGTCTCAAAATACAATGTTTGACTATGAAATTTGGACCACAACAGGTTGTTTGGTTTGTGAAGGTTAAAGAGATTGTGAACTTATTTTCCTCTAGTGGTTCATATAATTATAGAGATCTGGACATTGGTGTCTTCCTTTTTATCTACTCCCTTTGAACCATTTCATATGTCACCGTTTGACTTGGCATGGTGCTTAAGAAAAAAAGGACTTTTGAAATTTGTGGTCTAAAACAATCTTAGAACATTTGTGTGACCTTAAATCATTTCATTAAGGTAAAAGGGGAATTTTAAATTAAATTGTTTCCAATTATAGTAAGGTGACACTCTTTTTGGGACGGACTTAAAAGTAAAGGGTGGAAAGGGTTCCACATAAAATGGGACTGGGGAGTATCATTTAATACAATGTTGGTGCATCTGATTATGGGGTTTTTTTGGTCGTGGAGGGAGGTAATTAGGAAGGTATATTGGTTTTGACAACGCCAAAACTCTCGGGTTCATAAAAAGAAATTACTAATAAGAGTCCAGAGTTCTTCCTATGCTGTAAAGATCAATTATTGATTAACTTTAAACTTCAATAGAGAATGAACCCCATTCATTGAATTCAGCTTAGCCAGACGGTGTTTCTTCGAGTTTACTTAAGTAGAAAAATTGCTGATTGTTGATGAAAAAAATGTATATTCATATCAGAAGATGCTGAGAGAGAAGCACTCATAATTTATGGCCATGGTAAAAGTTTTGTACTCTCCTCTATGCGAATCAAACTATTTTATCCTGGGTAATTTCATGGATGGTCATCCAACTAAAAATCTTAGTGCACCAAAGCTATAAAATTAATTTTTGTAATGGAAAATGACTCTTAACTATGCGCAAATATCACATTAAATAAAAAACAATAATAATGCTAGAATCTGGTCATAGAAAACACAAGTAGGTTGCTAAATTGTATGAAATTTCTATACAAGTACAACCACGTCAGCAACTCAACCCTTAGATAATATCTACGTGGTGCTACCTAAATGAACAATTTTTTTCCGATCCAACTTACTACCCGACATCTTTACTGTGTGAGCCATCATTTTTTAGGACAGATTTATATTCTTGTAAGTGGTGTCACGTGGATATTATGTAAGATTAGTTGCTGAAATGACAACCTACTTGTGTTTCCAGACTCATTTTAGCATCTCTCGCTTTTTTTTTAAAAAAAAAATTCTACGTATATCCTATATTAGCCGAATGGAGTTTTCATGTTATTACAGTTAGTTATATTACTTTGGTGCAATAAATTGGAAGTTGGATGACAACGTATGAATTTAGCTATTTTGTTCTAATTATTGCAATTCCCTGTATCTTTAAGATTTGAGGAATAAAAGTTTATTTTTAAGGCGGATTGTTTGGCGACATAGCATCACTAAATTTTTCTTTCTTCTCTTTATGTAGATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACGGTACATCATTGAGTTTCTTAAACTCCTGTTGTGTTTTCCGGTAGCTGAATGAACTTTGTTAATTCCAATTTCTTAAGTATTCTGGAATTAACAGAAGAAACTTATACTAGAAGCATGGGCCAAGAAGGGTGGGGGTGAGTGGAGATTGCCCCCTTCCCTGTTGCATGATATAATCAAAGGTCTTTAAATGCTCCATATCTGGGAAGTTTGAATTAGTCTAGGATTTTCGGTTTTGACACCTAAAAGCTCTTTGACCCCGCTCCACCGATCATGAACAGGTTCTTAAAATACTCCATGTTAGGAAAAGGCATGAATTAGGATGTTATTTTAGGTTTTGGCTCCTCTAAAAACTCTGACCATTCAAGCCTTCTAATCCTCTATGCAAACTCAATGTCCTTTCAATCTGACATGTTATGTGCTGTGAAATAATCATTTAATGCCTCACATATTCAAGTCCGACTTCAATTTGGTAATACTGTATTAAAATATTGATAAGTTGGGACAAATCTCAGTTTTTCTAACAGACAGACAAACAACAACTAAAGTTTCATATCACAAACAAGAAAACCAAAAACCCAGATGTAAATTCAAGATTTTGCAGTTTACAACAGTAACACATTCTCAATGAAATCCCACTAAGTGGGGAGCATCAAGCTTTAAGCTAAACATTCTGGTTTATATTATATTAAGAGATAAACAGAATCACCTTTCATTTTTGGTTTCAACGAGATGCTTATGCGGTACACCTTTTTTTTTTTTGGTTCTGCAGGTGAAGAAACGACACACACCATTGTTAAAGGTCAGTCTATACTGTAATCTGATTTAGACATCTAGTCTAGTTTATTTCCTCTTGGGATTGTGAAAACTCATGTTCCCTTGTTTGCTTAGGAAATTGAAGTAGCTGTCTGTAGACACAGTATAGGGAGATAACTATCACCTCATGAATTTTTTGGTGCCACCTTTACCGATTTAAAAGCCTAGATTGTTTTCCTGTTTTTTTGAAAGGACCTTTCTATCACACACAATTCCAAGTTCCTCTCATATCTGCAGATATACCAAGGCAAGAAACATTCTAGTTTTGATGTTGTAATGCTGTCGCAAAGGAATTGATCAAAACTTTTAAACTACAAGCACTTTAAAGTTTTCAAAAATAATTTAATTATTGACTGGCTCAAAGGATAGCATATATTCGTTGAACGCGCGCACAACCAAAACCTAACACAAGGGCCTTCAGTTATCTGTGTTTAACTTTCTTTATAACCTGCCATATGTTTTGCAGATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTTGTGGGACATTGTGTCGTGTCAAAACACTAGTAGCCTTGTTTTTCTCTCCAAAAGAAATTAGCGTGTCAAAATACTTACGAACTGTGATTGT</genome_strand>
        <mrna_strand>AAAATCAATTTCATGTCTACCCAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAACGACACACACCATTGTTAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTTGTGGGACATTGTGTCGTGTCAAAACACTAGTAGCCTTGTTTTTCTCTCCAAAAGAAATTAGCGTGTCAAAATACTTACGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546207" ref_strand="+" ref_description="SGN-E546207 [TUS-69-H7](-)">
      <seq>ttgggacaatggtgnctagcgatctttatgaaggagcacggatggccagggtgtctgatgttcctggaataaagcagttgttacaaccgctggaagagtctggaacattgatcagaaggactgaggaagagctggtgaaagcactgcattcattcattattgtggagagagagggtcatattatagcatgtgcagctctctttccttactttgaagaaaaatgtggggaggttgctgctattgctgtttctcctgattgtcgtggccaaggacagggagacaagttactcgattatattgaaaagaaagcatcttctcttggattgcaaatgctcttccttctaacaactcgcacagctgattggtttgtgaggcgtggcttttctgaatgttccattgatcatataccagagcaaagaaggaaaaagatcaacctcgcccgtagatcaaagtattacatgaagaagctgctacccgataaaagtggtatacgtatcgattgcaccttcgcgtaggaattgaaggtttttcatctgtctgtgtactagctctgcaacaagctcctatttagtcaaccggaaaatcaaccaattgttcctgacaactcaagtcatatataggggggagattaatctttgttgttactgcctgctattttcttttgcggtaggtttggaagagtattttgatcgacgatgtatgcttatttatatctacgttaattgatcttcaaaaaaaaaaaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="45873" stop="4669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45564" g_stop="45453" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="131" r_length="112" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45452" i_stop="45344" i_length="109">
            <donor d_prob="0.958" d_score="0.96"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45343" g_stop="45184" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="291" r_length="160" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45183" i_stop="44750" i_length="434">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44749" g_stop="44677" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="364" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44676" i_stop="43525" i_length="1152">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43524" g_stop="43160" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="733" r_length="369" r_score="0.962"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43159" i_stop="42258" i_length="902">
            <donor d_prob="0.000" d_score="0.83"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42257" g_stop="42234" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="734" r_stop="757" r_length="24" r_score="0.792"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E546207" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45564" e_stop="45453"/>
          <exon e_start="45343" e_stop="45184"/>
          <exon e_start="44749" e_stop="44677"/>
          <exon e_start="43524" e_stop="43160"/>
          <exon e_start="42257" e_stop="42234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATCTTTATGAAGGAGCACGGATGGCCAGGGTGTCAGATGTTCCTGGAATAAAGCAGTTGTTACAACCTCTGGAAGAGTCTGGAACATTGATCAGAAGAACTGAGGAAGAGGTTACACCTAATGCTTGTCATTGTTCAAATTTATCTAGTCAGCTTCTGTTTTATCTTTGTTGGCTTATGTTTCTTTAACCATAATCTATTATTGCTTAACTTGTTCTAGCTGGTGAAAGCACTGCATTCATTCATTATTGTGGAGAGAGAGGGTCATATTATAGCATGTGCAGCTCTCTTTCCTTACTTTGAAGAAAAATGTGGGGAGGTTGCTGCTATTGCTGTTTCTCCGGATTGTCGTGGCCAAGGACAGGGAGACAAGTTACTCGGTATGGTGACTCTTTTCTCATAATAAAACCATTTATTCTTCCACATTGAAGACATATGAGCACCTTCGAGGATATTTTATTTCCTATTTAATCCATATTGAAATTGCAAGCACATTAGCAAGAGAGTACTAGTATGTGTGTCCCAAGGACCACCGCCTGGTCCATTATGGAATGACCTTATAACCATGAAATCTGACTCGATTATCAGATTCTGAGCCTTTTGTGGCAAGCGTTTAGAAATTGCTAATATAGAGATACTTTTGTCAAAATAGCTCTTCAGAGAATTATTTTGGAGAGAAGCAGTTTGTCTTTGGCTAATTCATTTGAGAAGTACTTCCTATCGTATTTGATAAATGGATATTTGGACGATCTTTTTTAATAGTGATGTTGAGCATCTGTATTTACCAATAACTTTGTATTCCAAAATTTTGCAGATTACATTGAAAAGAAAGCATCTTCTCTTGGATTGCAAATGCTCTTCCTTCTAACAACTCGCACAGCTGATTGGTACTCTCCTCTCACATTTCTACCTTTTATTCCCATGGCATTTAGTAGTTTACTGATAGTACCATACAATTCTACTTTCAATTAAGCAAGTGAACATAGTTTGTCCAAGTAGAGGTTTGGACACTTAACTAATTGACAATCGCGCAATGACAGCTTAGAGTAATGTAAATAAAACAAATTTGTGATGTTTGAGCTGAATTTGAGTATGTTTGACATCTTAACAAGAAGAAAAATAGATTGAAAGACCAACATAGGTGTTTTAAATAAGACAGACACTTGCCTAAAAGAACAAAAAAATGTTTCTATTGATTTTGATTTACTACACATAATTATTTGGATTTCACTCTACTGTTATTTATTTAGGGTGCATGGACACTAACATATGTGTTAGGCAACTACTTGGAACTTTTGTTACATTTACAGCATATCTCCTATATTCCTCGTTCTTTTTTGCTCAGAAGTAAAAAAGTAGTTTTGGCTTCTTCATATATTCTTGTTGAGTCTTCATAAAGTGTGCTCAAAAGTCGCATCTCTTATAGACATTAGTTGTCTGTTATTCATTAACCGAGGAGACAAGTGTACGTTTCTAAGACGGAAAAGAAATCAAAGTACACGATGCTCATTGTTTAAATAAGAGGATAGCAATAATGTTGTTAAATCCAGACCTCTAAAGAAAAGAAAAACATGAACACTTGATTGATGCAAAAAGCTAACACAGGTCAGACCAAGAGGAGAAGAAGAGAGCTGGCTGTAACTTGATTCGCTTGAATGCTTATAAAAGTCAAAAAGGCTTTCAAGTGACCTTCAATTGATCAGCGAGCTTATTGGTCATGATAACTTGATATTCACATGTTATGCAGTTTTATATTCGAGAGATCAGTCCCAGCTTGCTAATCCATAAATTTTGAATATATTTTTTTTGTCTACCTCTTGCATCAATTAAGTTACTTATTAAAGTTCTTCATTTTATTTGTCCATATCTTCATATACAAGGTTTGTGGTTGCAAGACTTAGATAATGAGTATTTCTGCAATAAATGAACGTTGGATGAATCATATTCACCTTCCTCAACGTTACTAAAGGTGGAAAACCACCTTCTTAATTCTTTAAGCGAGTCCGATATTTCATTGATGCCAAGATTATTTGTCACAGGTTTGTGAGGCGTGGCTTTTCTGAATGTTCCATTGATCATATACCAGAGCAAAGAAGGAAAAAAATCAATCTCGCCCGTAGATCAAAGTATTACATGAAGAAGCTGCTACCCGATAAAAGTGGTATACGTATCGATTGCACCTTCGCGTAGGAATTGAAGGTTTTTCATCTGTCTGTGTACTAGCTCTGCAACAAGCTCGTATTTAGTCAACCAGAAAATCAACCAATTGTTCCTGACAACTCAAGTCATATATAGGGGGGAGATTAATCTTTGTTGTTATTGCCTGCTATTATCTTTTGCGGTAGGTTTGGAAGAGTATTTTGATCGACGATGTATGC----TTATATCTACGTTAATTGATCTTCAAATAGCGGACACCCCTTTGTTATCTTTTCTTTGTGGGTTCTTGGTCAAAATGTTTCAAAAAAATAAGTTTTTAAATAATGAGAAATTCTTGGTAGAAGTAGGAAAAAGCCCCACTACTAACCTTATTCCATCTAATAGTGTTTTGTTAGATTATGTATGAATTCAATGAGAATAATTTCTCTCTTTTTTTTTTTGGTTATGTATCAAACACTAGCAAATAAAAAAGAGATTCACTTGATTTTCAAGAATACATTTTTATTTATGCCAAACAATACATTTTTCTTCTTACTGGAGGACAGTCGACACACGCACATATTGCTTAGGATCTTGGTTAAAGCTCTAAATTTTGGGTCGTATTCAATTCAAACGAATAATTAACTAATAAGTTTCGAGGGCTTTCTTCAATTCTTCACACTTAAATTTTCCCCTGTTATTTTCACAAGATTTCGACGTGTATGCTTCGATAAATAAAAAAAAGTGAAATCAATAATTCTATATTTTTGGAAAATAGAAGATAAGCACTCTTTTTTTTCTCTTTTTGATATTGTCATTCACCAGTCAAGCCTTCTGATCGATATGAGAAGAATAGTTAAAACTAGTTTGAATTCGTGTCTATATGTAGAGCGTCATATGACTGGTACACTAGAAGAAGTGTGGTTTCTGTACTTGAACAAGAAACAAACTCAACCGACAATCACAGTTCGTAAGTATTTTGACACGCTAATTTCTTTTGGAGAGAAAAACAAGGCTACTAGTGTTTTGACACGACACAATGTCCCACAAGTACAGAAACACCCGGAAATTGCTTCACAAAGGTTTTAAGACATTGCATGTACTTGTGGATTTTCATAAGTTTGATTTATTAAATCCTTCAAGAAGGAGATCTGCCCAACTTTAGAGAAGGTAAAAAAAAAAAGAAAACAGAAT</genome_strand>
        <mrna_strand>CGATCTTTATGAAGGAGCACGGATGGCCAGGGTGTCTGATGTTCCTGGAATAAAGCAGTTGTTACAACCGCTGGAAGAGTCTGGAACATTGATCAGAAGGACTGAGGAAGAG.............................................................................................................CTGGTGAAAGCACTGCATTCATTCATTATTGTGGAGAGAGAGGGTCATATTATAGCATGTGCAGCTCTCTTTCCTTACTTTGAAGAAAAATGTGGGGAGGTTGCTGCTATTGCTGTTTCTCCTGATTGTCGTGGCCAAGGACAGGGAGACAAGTTACTCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATATTGAAAAGAAAGCATCTTCTCTTGGATTGCAAATGCTCTTCCTTCTAACAACTCGCACAGCTGATTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGAGGCGTGGCTTTTCTGAATGTTCCATTGATCATATACCAGAGCAAAGAAGGAAAAAGATCAACCTCGCCCGTAGATCAAAGTATTACATGAAGAAGCTGCTACCCGATAAAAGTGGTATACGTATCGATTGCACCTTCGCGTAGGAATTGAAGGTTTTTCATCTGTCTGTGTACTAGCTCTGCAACAAGCTCCTATTTAGTCAACCGGAAAATCAACCAATTGTTCCTGACAACTCAAGTCATATATAGGGGGGAGATTAATCTTTGTTGTTACTGCCTGCTATTTTCTTTTGCGGTAGGTTTGGAAGAGTATTTTGATCGACGATGTATGCTTATTTATATCTACGTTAATTGATCTTCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E553077" ref_strand="+" ref_description="SGN-E553077 [cTSB-5-P15]">
      <seq>cttggattgcaaatgctcttccttctaacaactcgcacagctgattggtttgtgaggcgtggcttttctgaatgttccattgatcatataccagagcaaagaaggaaaaagatcaatctcgcccgtagatcaaagtattacatgaagaagctgctacccgataaaagtggtatacgtatcgattgcaccttcgcgtaggaattgaaggtttttcatctgtctgtgtactagctctgcaacaagctcgtatttagtcaaccagaaaatcaaccaattgttcctgacaactcaagtcatatataggggggagattaatctttgttgttactgcctgctattatcttttgcggtaggtttggaagagtattttgatcgacgatgtatgcttatatctacgttaattgatcttcaaatagcggacacccctttgttatcttttctttgtgggttcttggtcaaaatgtttcaaaaaagtaagtttttaaataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="45023" stop="4676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44723" g_stop="44677" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44676" i_stop="43525" i_length="1152">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43524" g_stop="43077" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="495" r_length="448" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43076" i_stop="42261" i_length="816">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42260" g_stop="42235" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="521" r_length="26" r_score="0.769"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E553077" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44723" e_stop="44677"/>
          <exon e_start="43524" e_stop="43077"/>
          <exon e_start="42260" e_stop="42235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGATTGCAAATGCTCTTCCTTCTAACAACTCGCACAGCTGATTGGTACTCTCCTCTCACATTTCTACCTTTTATTCCCATGGCATTTAGTAGTTTACTGATAGTACCATACAATTCTACTTTCAATTAAGCAAGTGAACATAGTTTGTCCAAGTAGAGGTTTGGACACTTAACTAATTGACAATCGCGCAATGACAGCTTAGAGTAATGTAAATAAAACAAATTTGTGATGTTTGAGCTGAATTTGAGTATGTTTGACATCTTAACAAGAAGAAAAATAGATTGAAAGACCAACATAGGTGTTTTAAATAAGACAGACACTTGCCTAAAAGAACAAAAAAATGTTTCTATTGATTTTGATTTACTACACATAATTATTTGGATTTCACTCTACTGTTATTTATTTAGGGTGCATGGACACTAACATATGTGTTAGGCAACTACTTGGAACTTTTGTTACATTTACAGCATATCTCCTATATTCCTCGTTCTTTTTTGCTCAGAAGTAAAAAAGTAGTTTTGGCTTCTTCATATATTCTTGTTGAGTCTTCATAAAGTGTGCTCAAAAGTCGCATCTCTTATAGACATTAGTTGTCTGTTATTCATTAACCGAGGAGACAAGTGTACGTTTCTAAGACGGAAAAGAAATCAAAGTACACGATGCTCATTGTTTAAATAAGAGGATAGCAATAATGTTGTTAAATCCAGACCTCTAAAGAAAAGAAAAACATGAACACTTGATTGATGCAAAAAGCTAACACAGGTCAGACCAAGAGGAGAAGAAGAGAGCTGGCTGTAACTTGATTCGCTTGAATGCTTATAAAAGTCAAAAAGGCTTTCAAGTGACCTTCAATTGATCAGCGAGCTTATTGGTCATGATAACTTGATATTCACATGTTATGCAGTTTTATATTCGAGAGATCAGTCCCAGCTTGCTAATCCATAAATTTTGAATATATTTTTTTTGTCTACCTCTTGCATCAATTAAGTTACTTATTAAAGTTCTTCATTTTATTTGTCCATATCTTCATATACAAGGTTTGTGGTTGCAAGACTTAGATAATGAGTATTTCTGCAATAAATGAACGTTGGATGAATCATATTCACCTTCCTCAACGTTACTAAAGGTGGAAAACCACCTTCTTAATTCTTTAAGCGAGTCCGATATTTCATTGATGCCAAGATTATTTGTCACAGGTTTGTGAGGCGTGGCTTTTCTGAATGTTCCATTGATCATATACCAGAGCAAAGAAGGAAAAAAATCAATCTCGCCCGTAGATCAAAGTATTACATGAAGAAGCTGCTACCCGATAAAAGTGGTATACGTATCGATTGCACCTTCGCGTAGGAATTGAAGGTTTTTCATCTGTCTGTGTACTAGCTCTGCAACAAGCTCGTATTTAGTCAACCAGAAAATCAACCAATTGTTCCTGACAACTCAAGTCATATATAGGGGGGAGATTAATCTTTGTTGTTATTGCCTGCTATTATCTTTTGCGGTAGGTTTGGAAGAGTATTTTGATCGACGATGTATGCTTATATCTACGTTAATTGATCTTCAAATAGCGGACACCCCTTTGTTATCTTTTCTTTGTGGGTTCTTGGTCAAAATGTTTCAAAAAAATAAGTTTTTAAATAATGAGAAATTCTTGGTAGAAGTAGGAAAAAGCCCCACTACTAACCTTATTCCATCTAATAGTGTTTTGTTAGATTATGTATGAATTCAATGAGAATAATTTCTCTCTTTTTTTTTTTGGTTATGTATCAAACACTAGCAAATAAAAAAGAGATTCACTTGATTTTCAAGAATACATTTTTATTTATGCCAAACAATACATTTTTCTTCTTACTGGAGGACAGTCGACACACGCACATATTGCTTAGGATCTTGGTTAAAGCTCTAAATTTTGGGTCGTATTCAATTCAAACGAATAATTAACTAATAAGTTTCGAGGGCTTTCTTCAATTCTTCACACTTAAATTTTCCCCTGTTATTTTCACAAGATTTCGACGTGTATGCTTCGATAAATAAAAAAAAGTGAAATCAATAATTCTATATTTTTGGAAAATAGAAGATAAGCACTCTTTTTTTTCTCTTTTTGATATTGTCATTCACCAGTCAAGCCTTCTGATCGATATGAGAAGAATAGTTAAAACTAGTTTGAATTCGTGTCTATATGTAGAGCGTCATATGACTGGTACACTAGAAGAAGTGTGGTTTCTGTACTTGAACAAGAAACAAACTCAACCGACAATCACAGTTCGTAAGTATTTTGACACGCTAATTTCTTTTGGAGAGAAAAACAAGGCTACTAGTGTTTTGACACGACACAATGTCCCACAAGTACAGAAACACCCGGAAATTGCTTCACAAAGGTTTTAAGACATTGCATGTACTTGTGGATTTTCATAAGTTTGATTTATTAAATCCTTCAAGAAGGAGATCTGCCCAACTTTAGAGAAGGTAAAAAAAAAAAGAAAACAGAA</genome_strand>
        <mrna_strand>CTTGGATTGCAAATGCTCTTCCTTCTAACAACTCGCACAGCTGATTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGAGGCGTGGCTTTTCTGAATGTTCCATTGATCATATACCAGAGCAAAGAAGGAAAAAGATCAATCTCGCCCGTAGATCAAAGTATTACATGAAGAAGCTGCTACCCGATAAAAGTGGTATACGTATCGATTGCACCTTCGCGTAGGAATTGAAGGTTTTTCATCTGTCTGTGTACTAGCTCTGCAACAAGCTCGTATTTAGTCAACCAGAAAATCAACCAATTGTTCCTGACAACTCAAGTCATATATAGGGGGGAGATTAATCTTTGTTGTTACTGCCTGCTATTATCTTTTGCGGTAGGTTTGGAAGAGTATTTTGATCGACGATGTATGCTTATATCTACGTTAATTGATCTTCAAATAGCGGACACCCCTTTGTTATCTTTTCTTTGTGGGTTCTTGGTCAAAATGTTTCAAAAAAGTAAGTTTTTAAATAAAAAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281393" ref_strand="+" ref_description="SGN-E281393 [cLEL-1-A1]">
      <seq>tttttttatcttgaagatcaattaacgtagatatgggcatatatcgtcgatcaaaatactcttgcaaacctaccgcaaaagataatagcaggcaataacaacaaagattaatctcccccctatatatgacttgagttgtcaggaacaattggttgattttctggttgactaaatacgagcttgttgcagagctagtacacagacagatgaaaaaccttcaattcctacgcgaaggtgcaatcgatacgtataccacttttatcgggtagcagcttcttcatgtaatactttgatctacgggcgagattgattttttttcttctttggtctggtatatgatcaatggaacattcagaaaagccacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="42857" stop="43814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43151" g_stop="43514" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E281393" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43151" e_stop="43514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCGCTAT-TTGAAGATCAATTAACGTAGATATAAGCATACATCGTCGATCAAAATACTCTTCCAAACCTACCGCAAAAGATAATAGCAGGCAATAACAACAAAGATTAATCTCCCCCCTATATATGACTTGAGTTGTCAGGAACAATTGGTTGATTTTCTGGTTGACTAAATACGAGCTTGTTGCAGAGCTAGTACACAGACAGATGAAAAACCTTCAATTCCTACGCGAAGGTGCAATCGATACGTATACCACTTTTATCGGGTAGCAGCTTCTTCATGTAATACTTTGATCTACGGGCGAGATTGATTTTTTTCCTTCTTTGCTCTGGTATATGATCAATGGAACATTCAGAAAAGCCACG</genome_strand>
        <mrna_strand>TTTTTTTATCTTGAAGATCAATTAACGTAGATATGGGCATATATCGTCGATCAAAATACTCTTGCAAACCTACCGCAAAAGATAATAGCAGGCAATAACAACAAAGATTAATCTCCCCCCTATATATGACTTGAGTTGTCAGGAACAATTGGTTGATTTTCTGGTTGACTAAATACGAGCTTGTTGCAGAGCTAGTACACAGACAGATGAAAAACCTTCAATTCCTACGCGAAGGTGCAATCGATACGTATACCACTTTTATCGGGTAGCAGCTTCTTCATGTAATACTTTGATCTACGGGCGAGATTGATTTTTTTTCTTCTTTGGTCTGGTATATGATCAATGGAACATTCAGAAAAGCCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E589549" ref_strand="-" ref_description="SGN-E589549 [43125]">
      <seq>tcagaaggactgaggaagagctggtgaaagcactgcactcattcattattgtggagagagagggccatattatagcatgtgcagctctctttccttactttgaagaaaaatgtggggaggttgctgctattgctgtttctcctgattgtcgtggccaaggacagggagacaagttactcgattatattgaaaagaaagcatcttcccttggattgcaaatgctcttcctactaacaactcgcacagctgattggtttgtgaggcgtgggttttccgaatgttccattgatcatataccagaggaaagaaggaaaaagatcaatcttgcccgtagatcaaagtattacatgaagaagctgctacccgataaaagtggtatacgtatcgattgcacctttgcataggaatcaaaggtttttcatctgtctgtgtacaagctcatatttagtgaagtagaaaatcaaccaattgttcctgacaactcaagtcattatataagggggagattgatctttgttgttactgcctgctattttcttttgcgcggtaggtttggaagagaactttgattacgatgtatgcttaaatctacgtcaattaacggatcttttcttttgtgggttcttggtctaaatgttttgaaataatgaggagaaattcttgatagaagtttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="45645" stop="42794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45472" g_stop="45453" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45452" i_stop="45344" i_length="109">
            <donor d_prob="0.958" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45343" g_stop="45184" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="180" r_length="160" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45183" i_stop="44750" i_length="434">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44749" g_stop="44677" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="253" r_length="73" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44676" i_stop="43525" i_length="1152">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.604" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43524" g_stop="43168" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="600" r_length="347" r_score="0.882"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E589549" ref_strand="-">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E589549" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="45472" e_stop="45453"/>
          <exon e_start="45343" e_stop="45184"/>
          <exon e_start="44749" e_stop="44677"/>
          <exon e_start="43524" e_stop="43168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAAGAACTGAGGAAGAGGTTACACCTAATGCTTGTCATTGTTCAAATTTATCTAGTCAGCTTCTGTTTTATCTTTGTTGGCTTATGTTTCTTTAACCATAATCTATTATTGCTTAACTTGTTCTAGCTGGTGAAAGCACTGCATTCATTCATTATTGTGGAGAGAGAGGGTCATATTATAGCATGTGCAGCTCTCTTTCCTTACTTTGAAGAAAAATGTGGGGAGGTTGCTGCTATTGCTGTTTCTCCGGATTGTCGTGGCCAAGGACAGGGAGACAAGTTACTCGGTATGGTGACTCTTTTCTCATAATAAAACCATTTATTCTTCCACATTGAAGACATATGAGCACCTTCGAGGATATTTTATTTCCTATTTAATCCATATTGAAATTGCAAGCACATTAGCAAGAGAGTACTAGTATGTGTGTCCCAAGGACCACCGCCTGGTCCATTATGGAATGACCTTATAACCATGAAATCTGACTCGATTATCAGATTCTGAGCCTTTTGTGGCAAGCGTTTAGAAATTGCTAATATAGAGATACTTTTGTCAAAATAGCTCTTCAGAGAATTATTTTGGAGAGAAGCAGTTTGTCTTTGGCTAATTCATTTGAGAAGTACTTCCTATCGTATTTGATAAATGGATATTTGGACGATCTTTTTTAATAGTGATGTTGAGCATCTGTATTTACCAATAACTTTGTATTCCAAAATTTTGCAGATTACATTGAAAAGAAAGCATCTTCTCTTGGATTGCAAATGCTCTTCCTTCTAACAACTCGCACAGCTGATTGGTACTCTCCTCTCACATTTCTACCTTTTATTCCCATGGCATTTAGTAGTTTACTGATAGTACCATACAATTCTACTTTCAATTAAGCAAGTGAACATAGTTTGTCCAAGTAGAGGTTTGGACACTTAACTAATTGACAATCGCGCAATGACAGCTTAGAGTAATGTAAATAAAACAAATTTGTGATGTTTGAGCTGAATTTGAGTATGTTTGACATCTTAACAAGAAGAAAAATAGATTGAAAGACCAACATAGGTGTTTTAAATAAGACAGACACTTGCCTAAAAGAACAAAAAAATGTTTCTATTGATTTTGATTTACTACACATAATTATTTGGATTTCACTCTACTGTTATTTATTTAGGGTGCATGGACACTAACATATGTGTTAGGCAACTACTTGGAACTTTTGTTACATTTACAGCATATCTCCTATATTCCTCGTTCTTTTTTGCTCAGAAGTAAAAAAGTAGTTTTGGCTTCTTCATATATTCTTGTTGAGTCTTCATAAAGTGTGCTCAAAAGTCGCATCTCTTATAGACATTAGTTGTCTGTTATTCATTAACCGAGGAGACAAGTGTACGTTTCTAAGACGGAAAAGAAATCAAAGTACACGATGCTCATTGTTTAAATAAGAGGATAGCAATAATGTTGTTAAATCCAGACCTCTAAAGAAAAGAAAAACATGAACACTTGATTGATGCAAAAAGCTAACACAGGTCAGACCAAGAGGAGAAGAAGAGAGCTGGCTGTAACTTGATTCGCTTGAATGCTTATAAAAGTCAAAAAGGCTTTCAAGTGACCTTCAATTGATCAGCGAGCTTATTGGTCATGATAACTTGATATTCACATGTTATGCAGTTTTATATTCGAGAGATCAGTCCCAGCTTGCTAATCCATAAATTTTGAATATATTTTTTTTGTCTACCTCTTGCATCAATTAAGTTACTTATTAAAGTTCTTCATTTTATTTGTCCATATCTTCATATACAAGGTTTGTGGTTGCAAGACTTAGATAATGAGTATTTCTGCAATAAATGAACGTTGGATGAATCATATTCACCTTCCTCAACGTTACTAAAGGTGGAAAACCACCTTCTTAATTCTTTAAGCGAGTCCGATATTTCATTGATGCCAAGATTATTTGTCACAGGTTTGTGAGGCGTGGCTTTTCTGAATGTTCCATTGATCATATACCAGAGCAAAGAAGGAAAAAAATCAATCTCGCCCGTAGATCAAAGTATTACATGAAGAAGCTGCTACCCGATAAAAGTGGTATACGTATCGATTGCACCTTCGCGTAGGAATTGAAGGTTTTTCATCTGTCTGTGTACTAGCTCTGCAACAAGCTCGTATTTAGTCAACCAGAAAATCAACCAATTGTTCCTGACAACTCAAGTCA-TATATAGGGGGGAGATTAATCTTTGTTGTTATTGCCTGCTATTATCTTTT--GCGGTAGGTTTGGAAGAGTATTTTGATCGACGATGTATGCTTATATCTACGTTAATTG</genome_strand>
        <mrna_strand>TCAGAAGGACTGAGGAAGAG.............................................................................................................CTGGTGAAAGCACTGCACTCATTCATTATTGTGGAGAGAGAGGGCCATATTATAGCATGTGCAGCTCTCTTTCCTTACTTTGAAGAAAAATGTGGGGAGGTTGCTGCTATTGCTGTTTCTCCTGATTGTCGTGGCCAAGGACAGGGAGACAAGTTACTCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATATTGAAAAGAAAGCATCTTCCCTTGGATTGCAAATGCTCTTCCTACTAACAACTCGCACAGCTGATTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGAGGCGTGGGTTTTCCGAATGTTCCATTGATCATATACCAGAGGAAAGAAGGAAAAAGATCAATCTTGCCCGTAGATCAAAGTATTACATGAAGAAGCTGCTACCCGATAAAAGTGGTATACGTATCGATTGCACCTTTGCATAGGAATCAAAGGTTTTTCATCTGTC--TG---T-G---T---ACAAGCTCATATTTAGTGAAGTAGAAAATCAACCAATTGTTCCTGACAACTCAAGTCATTATATAAGGGGGAGATTGATCTTTGTTGTTACTGCCTGCTATTTTCTTTTGCGCGGTAGGTTTGGAAGAGAACTTTGAT-TACGATGTATGCTTAAATCTACGTCAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302074" ref_strand="+" ref_description="SGN-E302074 [cLEW-19-I1]">
      <seq>gaaaaactaatttgtatcatagacggcccaattcttgatgagtcgagccgtctgattcgtttcttaactcttcaagatgctgatatgctggtccgcagacgagctgagcaaagtgagactgctgctaattatgtaaaagctgttagtcaggaggacttcaatcgtttaagttaccatggttccaatggatcgctcccttcccaaaatggcgatgtttatagccaaagatataatccgacatttcagaatggcattggttttgacaatggaaatgggctttggtctagtgaacaaggttttgccattggaggacaagagaaactaagccgatcaaatggttatctctcagaattagctgctgctgcttttgtttgccgaggaggtgttcaaagagtgcacctgctggatggcactattggtggagttttattaaaggaattgttccaaagagatggagttgggacaatggttgctagcgatctttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="47409" stop="45822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47109" g_stop="46732" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46731" i_stop="46224" i_length="508">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46223" g_stop="46126" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="476" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E302074" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47109" e_stop="46732"/>
          <exon e_start="46223" e_stop="46126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAACTAATTTGTATCATAGACGGCCCAATTCTTGATGAGTCGAGCCGTCTGATTCGTTTCTTAACTCTTCAAGATGCTGATATGCTGGTCCGCAGACGAGCTGAGCAAAGTGAGACTGCTGCTAATTATGTAAAAGCTGTTAGTCAGGAGGACTTCAATCGTTTAGGTTACCATGGTTCCAATGGATCGCTCCCTTCCCAAAATGGCGATGTTTATAGCCAAAGATATAATCCGACATTTCAGAATGGCATTGGTTTTGACAATGGAAATGGGCTTTGGTCTAGTGAACAAGGTTTTGCCATTGGAGGACAAGAGAAACTAAGCCGATCAAATGGTTATCTCTCAGAATTAGCTGCTGCTGCTTTTGTTTGCCGAGTAAATTCCTGATAACACAATCAAATTATTTTTTACCATGCTTGATCTTCGTAATGCTAACCTGTTACTGATGAGTCTTGAATATACAAAGGAAGTTTACAGATTATCTTGTAAAATCGCATCTCTTTGTTATTAATTATTTTTTTTTGGGTTCCCACCCGGTGTCTGGAGCCCACATTGTAGCACCGACTAAATTCCGAACGCGCATTGCAGGGCCCATTCAGGGGTTTCGCTCCCAACTAGACTTTCTCCATACCCAAGGCTCAAACCCGAGACCTCTGGTTAAGGCTGATATGTGTGTTTCATGGATAGACAACTCGTTATTTTTACGCTAGTGATTGACATTGTGCAGAATATTATAAATATCCACTCTCCTAGTGTTCTTCCATCTTAATTGCTTTAATGTGGAATTTTTCATTATTAAGAATATTGTTGTCACTTCACTTATTAGCGTGATATCTTTTTCTTGTTGAAACTTATTCAAATAATATATTTCTATTTCCATCAGGGAGGTGTTCAAAGAGTGCACCTGCTGGATGGCACTATTGGTGGAGTTTTATTAAAGGAATTGTTCCAAAGAGATGGAGTTGGGACAATGGTTGCTAG</genome_strand>
        <mrna_strand>GAAAAACTAATTTGTATCATAGACGGCCCAATTCTTGATGAGTCGAGCCGTCTGATTCGTTTCTTAACTCTTCAAGATGCTGATATGCTGGTCCGCAGACGAGCTGAGCAAAGTGAGACTGCTGCTAATTATGTAAAAGCTGTTAGTCAGGAGGACTTCAATCGTTTAAGTTACCATGGTTCCAATGGATCGCTCCCTTCCCAAAATGGCGATGTTTATAGCCAAAGATATAATCCGACATTTCAGAATGGCATTGGTTTTGACAATGGAAATGGGCTTTGGTCTAGTGAACAAGGTTTTGCCATTGGAGGACAAGAGAAACTAAGCCGATCAAATGGTTATCTCTCAGAATTAGCTGCTGCTGCTTTTGTTTGCCGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGTGTTCAAAGAGTGCACCTGCTGGATGGCACTATTGGTGGAGTTTTATTAAAGGAATTGTTCCAAAGAGATGGAGTTGGGACAATGGTTGCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546167" ref_strand="+" ref_description="SGN-E546167 [TUS-69-G7]">
      <seq>aggaactcatgttcagattgaccggcttctgactgaaaggggaagtgaggccaagtatgtaggccgctacagaattacagaccctgattcactcgaggcagctatggatacatctggaagaattcgtcttatgatagaggcaaagttgtcacctggcccttcattgactggtgtccgccgacatggagataatagtcgctggcatgatagtgttggtgttgccagtggtaattttctatcagcgaagaaaagaggagttgttgaaggaattgattatgcttcaactggtgaagtaaagaagatagatgtttctcgaattcgcgagaggcttgatcaggattccatagtgctattgagcaatcttggttattccagctctggagaagtattaaactgcaacacatacgaagttgcaacagcttgtgccttagctctaggagcagaaaaactaatttgtatcatagatggcccaattcttgatgagtcgagccgtctcattcgtttcttaactcttcaagatgctgatatgctggtccgcagacgagctgagcaaagtgagactgctgctaattatgtaaaagctgttagtcaggaggacttcaatcgtttaggtttccatggttccaatgaatcgctcccttcccaaaatggccatgtttatagccaaagatataatccgacatttcagaatggcattggttttgacaatggaaatgggctatggtctagtgaaacaggttttgccattgggagacagagaaactaagccgatcaaatggtatctctcagattagctgctgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="49407" stop="46445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49107" g_stop="49067" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49066" i_stop="48520" i_length="547">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48519" g_stop="48314" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="247" r_length="206" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48313" i_stop="48145" i_length="169">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48144" g_stop="47993" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="399" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47992" i_stop="47153" i_length="840">
            <donor d_prob="0.458" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47152" g_stop="46745" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="804" r_length="405" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E546167" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49107" e_stop="49067"/>
          <exon e_start="48519" e_stop="48314"/>
          <exon e_start="48144" e_stop="47993"/>
          <exon e_start="47152" e_stop="46745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAACTCATGTTCAGATTGACCGGCTTCTGACTGAAAGGGGTGAGTGAAATTCTGATATATTCTATTTTTATGTTATTTCTTGTTATGGACAATGTAAATGTTTTTTTCTCTATTTCTGATATCGAGAGCAGGTATTTGTTAGTATTACTGTTTGAAATAAATATGTTATTCCTCTTTGCTGCTAACAGTTTTAGCATCATTTAGATACCTTATATATCAGAATTTATGATTTCTAAATCGAAGGTTATCTTTTTTTAGGAATTTCAGTTTTCATTCTCATTGTCTCAGAATGATTTTCTTTTCTAAAGATGCTAATGAAGTAATGCTGATTAGGACCAGTGGGGTTAAGTAGGTATGCACTTCTGTGTTCTCCTTTAGGCGATGGTATATGCTGGTATATGCGTCATTTGTATTTCAGAATAAATAAAAGTTGTAAAGGAACTCTACAGCTTTAATGTTAAATGGCATCGACATTTAATTTTGATTACTATATCTTCTTTTCTTTTGTTTCCAAATACTGATTTCATTTATCTTCTTACAAGAATATTCTAAGAAGCAAGCGATTTTTGTAACTTCTATTTAACAGGAAGTGAGGCCAAGTATGTAGGCCGCTACAGAATTACAGACCCTGATTCACTCGAGGCAGCTATGGATACATCCGGAAGAATTCGTCTTATGATAGAGGCAAAGTTGTCACCTGGCCCTTCATTGACTGGTGTCCGCCGACATGGAGATAATAGTCGCTGGCATGATAGTGTTGGTGTTGCCAGTGGTAATTTTCTATCAGCGAAGGTGCAAATTTGTCACCCACTGCCTGTTCATCTGTTCATTTTTGCTTTCTTTCCAAAACCTACATAAAGTGCCACCTACTCGCTTTACTAGATGTATAATCATTTTGGAGGTTTAAGTTTTATCATATATCTTCCATTGTAATGGTGATTTCATTCCAATTTGCTGGCAGAAAAGAGGAGTTGTCGAAGGAATTGATTATTCTTCAACTGGTGAAGTAAAGAAGATAGATGTTTCTCGAATTCGCGAGAGGCTTGATCAGGATTCCATAGTGCTATTGAGCAATCTTGGTTATTCCAGCTCTGGAGAAGTATTAAACTGCAAGTATGCTATATGACTTTTGATAGGTATTTTTGTTGTTGATTTGCATAAACTGGTGCTGCATAATGTTTACATAATCTGTTATCTCAAATGATAAATGCAGTCCAGACAGCTAGATACTAAAGTTTAATGATTTGCTTCCAGCATCTATTTCAATCAAACTTGTATTTGACATGTCTGGTCTACTCTAATTTATCTAAAATCACTTTGTTACTGTTTAGCTGTTTGACAAGTACTCAAGGGATTTTGTGAAACACATTCACTTGTAAGTTGCACACCTTAAAGTATCCACGTGCATTTAGATACAATTAAAGAAATCTAGAATTTTCACAAGGAAAGTACATTTTTAACCTTCTGCGCTATGTTTTATTCCTTCTATTCAAGTTAGTAGTCTTTTCCTATCTATGAATATGTATAGGTCAAATAAACTTTCATCTATATGAAGGGTGGCATCGCTGGTATTCATTTCATTGAAAGTTAACTTATTTGATGACTTCAAGATACTACAAAATACACTTGGTAAGAGAAAAAGAACTTACTACGGTAAGCTTGTCTGAAGCCACACCTGGTCAGTAGTCAGTTTTATGTCGCTTCAACTCATGTATCATTCACTTCTATCCCTGTAGAGAGATCAGATAATTCATTATGCCACTGGGAGGTGGTTTTTAGGCTTATATTGTATATGTAGATAGCAATTGCTAGTTGATCAGGCTAAATAGTTCTCAGTTTAAAATTTAAAGGTTTGACATGTGCTCTGTTGTTCATGCAACTGTAGCTTCTCTTACCTATTTTATTTTTCTTTGAGTTGTTAAGACTGATGATATGATCCGTTCAAAATTGCAGCACATACGAAGTTGCAACAGCTTGTGCCTTAGCTCTAGGAGCAGAAAAACTAATTTGTATCATAGACGGCCCAATTCTTGATGAGTCGAGCCGTCTGATTCGTTTCTTAACTCTTCAAGATGCTGATATGCTGGTCCGCAGACGAGCTGAGCAAAGTGAGACTGCTGCTAATTATGTAAAAGCTGTTAGTCAGGAGGACTTCAATCGTTTAGGTTACCATGGTTCCAATGGATCGCTCCCTTCCCAAAATGGCGATGTTTATAGCCAAAGATATAATCCGACATTTCAGAATGGCATTGGTTTTGACAATGGAAATGGGCTTTGGTCTAGTGAACAAGGTTTTGCCATTGGAGGACAAGAGAAACTAAGCCGATCAAATGGTTATCTCTCAGAATTAGCTGCTGCTGC</genome_strand>
        <mrna_strand>AGGAACTCATGTTCAGATTGACCGGCTTCTGACTGAAAGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGAGGCCAAGTATGTAGGCCGCTACAGAATTACAGACCCTGATTCACTCGAGGCAGCTATGGATACATCTGGAAGAATTCGTCTTATGATAGAGGCAAAGTTGTCACCTGGCCCTTCATTGACTGGTGTCCGCCGACATGGAGATAATAGTCGCTGGCATGATAGTGTTGGTGTTGCCAGTGGTAATTTTCTATCAGCGAAG.........................................................................................................................................................................AAAAGAGGAGTTGTTGAAGGAATTGATTATGCTTCAACTGGTGAAGTAAAGAAGATAGATGTTTCTCGAATTCGCGAGAGGCTTGATCAGGATTCCATAGTGCTATTGAGCAATCTTGGTTATTCCAGCTCTGGAGAAGTATTAAACTGCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATACGAAGTTGCAACAGCTTGTGCCTTAGCTCTAGGAGCAGAAAAACTAATTTGTATCATAGATGGCCCAATTCTTGATGAGTCGAGCCGTCTCATTCGTTTCTTAACTCTTCAAGATGCTGATATGCTGGTCCGCAGACGAGCTGAGCAAAGTGAGACTGCTGCTAATTATGTAAAAGCTGTTAGTCAGGAGGACTTCAATCGTTTAGGTTTCCATGGTTCCAATGAATCGCTCCCTTCCCAAAATGGCCATGTTTATAGCCAAAGATATAATCCGACATTTCAGAATGGCATTGGTTTTGACAATGGAAATGGGCTATGGTCTAGTGAAACAGGTTTTGCCATTGGGAGAC-AGAGAAACTAAGCCGATCAAATGG-TATCTCTCAG-ATTAGCTGCTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355977" ref_strand="+" ref_description="SGN-E355977 [cLHT-21-L16]">
      <seq>gaggaactcatgttcagattgaccggcttctgactgaaaagggaagtgaggccaagtatgtgggccgctacagaattacagaccctgattcactcaaggcaactatggatacatctggaagaattcgtcttatgatagaggcaaagttgtcacctggcccttcattgactggtgtccgccgacatggagataatagtcgctggcatgatagtgttggtgttgccagtggtaattttctatcatcgaagaaaagaggagttgttgaaggaattgattatgcttcaactggtgaagtaaagaagatagatgtttctcgaattcgcgagaggcttgatcacgattccatagtgctattgagcaatcttggttattccagctctggagaagtattaaactgcaacacatacgaagttgcaacagcttgtgccttagctctaggaacagaaaaactaatttgtatcatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="49407" stop="46788"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49108" g_stop="49067" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49066" i_stop="48520" i_length="547">
            <donor d_prob="0.999" d_score="0.95"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48519" g_stop="48314" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="248" r_length="206" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48313" i_stop="48145" i_length="169">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48144" g_stop="47993" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="400" r_length="152" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47992" i_stop="47153" i_length="840">
            <donor d_prob="0.458" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47152" g_stop="47088" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="465" r_length="65" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E355977" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49108" e_stop="49067"/>
          <exon e_start="48519" e_stop="48314"/>
          <exon e_start="48144" e_stop="47993"/>
          <exon e_start="47152" e_stop="47088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAACTCATGTTCAGATTGACCGGCTTCTGACTGAAAGGGGTGAGTGAAATTCTGATATATTCTATTTTTATGTTATTTCTTGTTATGGACAATGTAAATGTTTTTTTCTCTATTTCTGATATCGAGAGCAGGTATTTGTTAGTATTACTGTTTGAAATAAATATGTTATTCCTCTTTGCTGCTAACAGTTTTAGCATCATTTAGATACCTTATATATCAGAATTTATGATTTCTAAATCGAAGGTTATCTTTTTTTAGGAATTTCAGTTTTCATTCTCATTGTCTCAGAATGATTTTCTTTTCTAAAGATGCTAATGAAGTAATGCTGATTAGGACCAGTGGGGTTAAGTAGGTATGCACTTCTGTGTTCTCCTTTAGGCGATGGTATATGCTGGTATATGCGTCATTTGTATTTCAGAATAAATAAAAGTTGTAAAGGAACTCTACAGCTTTAATGTTAAATGGCATCGACATTTAATTTTGATTACTATATCTTCTTTTCTTTTGTTTCCAAATACTGATTTCATTTATCTTCTTACAAGAATATTCTAAGAAGCAAGCGATTTTTGTAACTTCTATTTAACAGGAAGTGAGGCCAAGTATGTAGGCCGCTACAGAATTACAGACCCTGATTCACTCGAGGCAGCTATGGATACATCCGGAAGAATTCGTCTTATGATAGAGGCAAAGTTGTCACCTGGCCCTTCATTGACTGGTGTCCGCCGACATGGAGATAATAGTCGCTGGCATGATAGTGTTGGTGTTGCCAGTGGTAATTTTCTATCAGCGAAGGTGCAAATTTGTCACCCACTGCCTGTTCATCTGTTCATTTTTGCTTTCTTTCCAAAACCTACATAAAGTGCCACCTACTCGCTTTACTAGATGTATAATCATTTTGGAGGTTTAAGTTTTATCATATATCTTCCATTGTAATGGTGATTTCATTCCAATTTGCTGGCAGAAAAGAGGAGTTGTCGAAGGAATTGATTATTCTTCAACTGGTGAAGTAAAGAAGATAGATGTTTCTCGAATTCGCGAGAGGCTTGATCAGGATTCCATAGTGCTATTGAGCAATCTTGGTTATTCCAGCTCTGGAGAAGTATTAAACTGCAAGTATGCTATATGACTTTTGATAGGTATTTTTGTTGTTGATTTGCATAAACTGGTGCTGCATAATGTTTACATAATCTGTTATCTCAAATGATAAATGCAGTCCAGACAGCTAGATACTAAAGTTTAATGATTTGCTTCCAGCATCTATTTCAATCAAACTTGTATTTGACATGTCTGGTCTACTCTAATTTATCTAAAATCACTTTGTTACTGTTTAGCTGTTTGACAAGTACTCAAGGGATTTTGTGAAACACATTCACTTGTAAGTTGCACACCTTAAAGTATCCACGTGCATTTAGATACAATTAAAGAAATCTAGAATTTTCACAAGGAAAGTACATTTTTAACCTTCTGCGCTATGTTTTATTCCTTCTATTCAAGTTAGTAGTCTTTTCCTATCTATGAATATGTATAGGTCAAATAAACTTTCATCTATATGAAGGGTGGCATCGCTGGTATTCATTTCATTGAAAGTTAACTTATTTGATGACTTCAAGATACTACAAAATACACTTGGTAAGAGAAAAAGAACTTACTACGGTAAGCTTGTCTGAAGCCACACCTGGTCAGTAGTCAGTTTTATGTCGCTTCAACTCATGTATCATTCACTTCTATCCCTGTAGAGAGATCAGATAATTCATTATGCCACTGGGAGGTGGTTTTTAGGCTTATATTGTATATGTAGATAGCAATTGCTAGTTGATCAGGCTAAATAGTTCTCAGTTTAAAATTTAAAGGTTTGACATGTGCTCTGTTGTTCATGCAACTGTAGCTTCTCTTACCTATTTTATTTTTCTTTGAGTTGTTAAGACTGATGATATGATCCGTTCAAAATTGCAGCACATACGAAGTTGCAACAGCTTGTGCCTTAGCTCTAGGAGCAGAAAAACTAATTTGTATCATAG</genome_strand>
        <mrna_strand>GAGGAACTCATGTTCAGATTGACCGGCTTCTGACTGAAAAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGAGGCCAAGTATGTGGGCCGCTACAGAATTACAGACCCTGATTCACTCAAGGCAACTATGGATACATCTGGAAGAATTCGTCTTATGATAGAGGCAAAGTTGTCACCTGGCCCTTCATTGACTGGTGTCCGCCGACATGGAGATAATAGTCGCTGGCATGATAGTGTTGGTGTTGCCAGTGGTAATTTTCTATCATCGAAG.........................................................................................................................................................................AAAAGAGGAGTTGTTGAAGGAATTGATTATGCTTCAACTGGTGAAGTAAAGAAGATAGATGTTTCTCGAATTCGCGAGAGGCTTGATCACGATTCCATAGTGCTATTGAGCAATCTTGGTTATTCCAGCTCTGGAGAAGTATTAAACTGCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATACGAAGTTGCAACAGCTTGTGCCTTAGCTCTAGGAACAGAAAAACTAATTTGTATCATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E693243" ref_strand="+" ref_description="SGN-E693243 [LH_Ea10N01]">
      <seq>cgattcgttagttaccggtacaaattcttccaactccacctacccccaacgccaccccattcaccaggcagctgccatagcccgctgccgtcaaaaagcccactacagtatcggagttcggcgtgcatttgcttgctcaaacctgagcgaccatggctgctttgtgtggcaacagtatttggactcctcaagctcgaaattgttttcagcggggaataactagttctaattcgttaaagtttttaccttttcaatttaattgttctaagagattgtggggtaggtcattgaagtgcagggttttgggggaaacggacgatgtgggatttgaagtgagtagtgccataaaagacgatctatttgttggttttttcagagaagcatggccttattttcttgcacatcgaagaagcacgtttgttgttttaatctcagctgaaattgttgatagccctcatttggatcatcttctcatggatatctcccttcttcatggtctgggaatcaaatttgttcttgtgccaggaactcatgttcagattgaccggcttctgactgaaaggggaagtgaggccaagtatgtaggccgctacagaattacagaccctgattcactcgaggcagctatggatacatctggaagaattcgtctcatgatagaggcaaagttgtcacctggcccttcattgactggtgtccgccgacatggagataatagtcgctggcatgatagtgttggtgttgccagtgggaattttctatcagcgaagaaaagaggagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="50034" stop="48014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49734" g_stop="49259" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49258" i_stop="49155" i_length="104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49154" g_stop="49067" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="564" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49066" i_stop="48520" i_length="547">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48519" g_stop="48314" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="770" r_length="206" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48313" i_stop="48145" i_length="169">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48144" g_stop="48132" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="771" r_stop="783" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E693243" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49734" e_stop="49259"/>
          <exon e_start="49154" e_stop="49067"/>
          <exon e_start="48519" e_stop="48314"/>
          <exon e_start="48144" e_stop="48132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGTCGTTGGTTACCGGTATAAATTCTTCCAACTCCACCTACCCCCAACGCCACCCCATTCACCAGGCAGCTGCCATAGCCCGCTGCCGTCAAAAAGCCCACTACAGTATCGGAGTTCGGCGTGCATTTGCTTGCTCAAACCTGAGCGACCATGGCTGCTTTTTGTGGCAACAGTATTTGGACTCCTCAAGCTCGAAATTGTTTTCAGCGGGGAATAACTTGTTCTAATTCGTTAAAGTTTTTACCTTTTCAATTTAGTTGTTGTAAGAGATTGTGGGGTAGGTCATTGAAGTGCAGGGTTTTGGGCGAAACGGACGATGTGGGATTTGAAGTGAGTAGTGCCATAAAAGACGACCTATTTGTTGGTTTTTTCAGAGAAGCATGGCCTTATTTTCTTGCACATCGAGGAAGCACGTTTGTTGTTTTAATCTCAGCTGAAATTGTTGATAGCCCTCATTTGGATCATCTTCTCATGGTATGATTGTCTTCTTTTTTCTTTTCTTGTTCCTTAATTTCATTTTAATTGTCAGAGGTGCTGTTTGTTAGCTTTAGATAATCTTTTCTGCTGAATTATTGCAGGATATCTCCCTTCTTCATGGTCTGGGAATCAAATTTGTTCTTGTGCCAGGAACTCATGTTCAGATTGACCGGCTTCTGACTGAAAGGGGTGAGTGAAATTCTGATATATTCTATTTTTATGTTATTTCTTGTTATGGACAATGTAAATGTTTTTTTCTCTATTTCTGATATCGAGAGCAGGTATTTGTTAGTATTACTGTTTGAAATAAATATGTTATTCCTCTTTGCTGCTAACAGTTTTAGCATCATTTAGATACCTTATATATCAGAATTTATGATTTCTAAATCGAAGGTTATCTTTTTTTAGGAATTTCAGTTTTCATTCTCATTGTCTCAGAATGATTTTCTTTTCTAAAGATGCTAATGAAGTAATGCTGATTAGGACCAGTGGGGTTAAGTAGGTATGCACTTCTGTGTTCTCCTTTAGGCGATGGTATATGCTGGTATATGCGTCATTTGTATTTCAGAATAAATAAAAGTTGTAAAGGAACTCTACAGCTTTAATGTTAAATGGCATCGACATTTAATTTTGATTACTATATCTTCTTTTCTTTTGTTTCCAAATACTGATTTCATTTATCTTCTTACAAGAATATTCTAAGAAGCAAGCGATTTTTGTAACTTCTATTTAACAGGAAGTGAGGCCAAGTATGTAGGCCGCTACAGAATTACAGACCCTGATTCACTCGAGGCAGCTATGGATACATCCGGAAGAATTCGTCTTATGATAGAGGCAAAGTTGTCACCTGGCCCTTCATTGACTGGTGTCCGCCGACATGGAGATAATAGTCGCTGGCATGATAGTGTTGGTGTTGCCAGTGGTAATTTTCTATCAGCGAAGGTGCAAATTTGTCACCCACTGCCTGTTCATCTGTTCATTTTTGCTTTCTTTCCAAAACCTACATAAAGTGCCACCTACTCGCTTTACTAGATGTATAATCATTTTGGAGGTTTAAGTTTTATCATATATCTTCCATTGTAATGGTGATTTCATTCCAATTTGCTGGCAGAAAAGAGGAGTTG</genome_strand>
        <mrna_strand>CGATTCGTTAGTTACCGGTACAAATTCTTCCAACTCCACCTACCCCCAACGCCACCCCATTCACCAGGCAGCTGCCATAGCCCGCTGCCGTCAAAAAGCCCACTACAGTATCGGAGTTCGGCGTGCATTTGCTTGCTCAAACCTGAGCGACCATGGCTGCTTTGTGTGGCAACAGTATTTGGACTCCTCAAGCTCGAAATTGTTTTCAGCGGGGAATAACTAGTTCTAATTCGTTAAAGTTTTTACCTTTTCAATTTAATTGTTCTAAGAGATTGTGGGGTAGGTCATTGAAGTGCAGGGTTTTGGGGGAAACGGACGATGTGGGATTTGAAGTGAGTAGTGCCATAAAAGACGATCTATTTGTTGGTTTTTTCAGAGAAGCATGGCCTTATTTTCTTGCACATCGAAGAAGCACGTTTGTTGTTTTAATCTCAGCTGAAATTGTTGATAGCCCTCATTTGGATCATCTTCTCATG........................................................................................................GATATCTCCCTTCTTCATGGTCTGGGAATCAAATTTGTTCTTGTGCCAGGAACTCATGTTCAGATTGACCGGCTTCTGACTGAAAGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGAGGCCAAGTATGTAGGCCGCTACAGAATTACAGACCCTGATTCACTCGAGGCAGCTATGGATACATCTGGAAGAATTCGTCTCATGATAGAGGCAAAGTTGTCACCTGGCCCTTCATTGACTGGTGTCCGCCGACATGGAGATAATAGTCGCTGGCATGATAGTGTTGGTGTTGCCAGTGGGAATTTTCTATCAGCGAAG.........................................................................................................................................................................AAAAGAGGAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E579423" ref_strand="+" ref_description="SGN-E579423 [86551]">
      <seq>tggcgagtcgttagttaccggtacaaattcttccaactccacccacccccaacgccactccattcagcaggcagctgccatagcccgtcgccgtcaaaaagcccactacagtatcggagttcggcgtgcatttgcttcctcaaacctgagcaaccatggctgctttgtgtggcaatagtatttggactcctcaagctcgaaattgttttcagcggggaataactagttctaattcgttaaagtttttatcttttcaagttaatcgttgtaagagattgtggagtaggccattgaagtgcagggttttgggggaaacggacgatgtgggttttgaagtgagtagtgccataaaagacgatctatttgttgggtttttcagagaagcatggccttattttcttgcacatcgaggaagcacgtttgttgttttaatctcagctgaaattgttgatagccctcatttggatcatcttctcatggatatctccctccttcatggtctgggaatcaaatttgttcttgtaccaggaactcatgttcagattgaccggcttctgactgaaaggggaagtgaggccaaagtatgttggccgctacagaattacagaccctgattcactcgagggcagctatggatacatctggaagaattcgtctcatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="50037" stop="48126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49737" g_stop="49259" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49258" i_stop="49155" i_length="104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49154" g_stop="49067" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="567" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49066" i_stop="48520" i_length="547">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48519" g_stop="48426" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="663" r_length="96" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E579423" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E579423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49737" e_stop="49259"/>
          <exon e_start="49154" e_stop="49067"/>
          <exon e_start="48519" e_stop="48426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCGAGTCGTTGGTTACCGGTATAAATTCTTCCAACTCCACCTACCCCCAACGCCACCCCATTCACCAGGCAGCTGCCATAGCCCGCTGCCGTCAAAAAGCCCACTACAGTATCGGAGTTCGGCGTGCATTTGCTTGCTCAAACCTGAGCGACCATGGCTGCTTTTTGTGGCAACAGTATTTGGACTCCTCAAGCTCGAAATTGTTTTCAGCGGGGAATAACTTGTTCTAATTCGTTAAAGTTTTTACCTTTTCAATTTAGTTGTTGTAAGAGATTGTGGGGTAGGTCATTGAAGTGCAGGGTTTTGGGCGAAACGGACGATGTGGGATTTGAAGTGAGTAGTGCCATAAAAGACGACCTATTTGTTGGTTTTTTCAGAGAAGCATGGCCTTATTTTCTTGCACATCGAGGAAGCACGTTTGTTGTTTTAATCTCAGCTGAAATTGTTGATAGCCCTCATTTGGATCATCTTCTCATGGTATGATTGTCTTCTTTTTTCTTTTCTTGTTCCTTAATTTCATTTTAATTGTCAGAGGTGCTGTTTGTTAGCTTTAGATAATCTTTTCTGCTGAATTATTGCAGGATATCTCCCTTCTTCATGGTCTGGGAATCAAATTTGTTCTTGTGCCAGGAACTCATGTTCAGATTGACCGGCTTCTGACTGAAAGGGGTGAGTGAAATTCTGATATATTCTATTTTTATGTTATTTCTTGTTATGGACAATGTAAATGTTTTTTTCTCTATTTCTGATATCGAGAGCAGGTATTTGTTAGTATTACTGTTTGAAATAAATATGTTATTCCTCTTTGCTGCTAACAGTTTTAGCATCATTTAGATACCTTATATATCAGAATTTATGATTTCTAAATCGAAGGTTATCTTTTTTTAGGAATTTCAGTTTTCATTCTCATTGTCTCAGAATGATTTTCTTTTCTAAAGATGCTAATGAAGTAATGCTGATTAGGACCAGTGGGGTTAAGTAGGTATGCACTTCTGTGTTCTCCTTTAGGCGATGGTATATGCTGGTATATGCGTCATTTGTATTTCAGAATAAATAAAAGTTGTAAAGGAACTCTACAGCTTTAATGTTAAATGGCATCGACATTTAATTTTGATTACTATATCTTCTTTTCTTTTGTTTCCAAATACTGATTTCATTTATCTTCTTACAAGAATATTCTAAGAAGCAAGCGATTTTTGTAACTTCTATTTAACAGGAAGTGAGGCC-AAGTATGTAGGCCGCTACAGAATTACAGACCCTGATTCACTCGA-GGCAGCTATGGATACATCCGGAAGAATTCGTCTTATGAT</genome_strand>
        <mrna_strand>TGGCGAGTCGTTAGTTACCGGTACAAATTCTTCCAACTCCACCCACCCCCAACGCCACTCCATTCAGCAGGCAGCTGCCATAGCCCGTCGCCGTCAAAAAGCCCACTACAGTATCGGAGTTCGGCGTGCATTTGCTTCCTCAAACCTGAGCAACCATGGCTGCTTTGTGTGGCAATAGTATTTGGACTCCTCAAGCTCGAAATTGTTTTCAGCGGGGAATAACTAGTTCTAATTCGTTAAAGTTTTTATCTTTTCAAGTTAATCGTTGTAAGAGATTGTGGAGTAGGCCATTGAAGTGCAGGGTTTTGGGGGAAACGGACGATGTGGGTTTTGAAGTGAGTAGTGCCATAAAAGACGATCTATTTGTTGGGTTTTTCAGAGAAGCATGGCCTTATTTTCTTGCACATCGAGGAAGCACGTTTGTTGTTTTAATCTCAGCTGAAATTGTTGATAGCCCTCATTTGGATCATCTTCTCATG........................................................................................................GATATCTCCCTCCTTCATGGTCTGGGAATCAAATTTGTTCTTGTACCAGGAACTCATGTTCAGATTGACCGGCTTCTGACTGAAAGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGAGGCCAAAGTATGTTGGCCGCTACAGAATTACAGACCCTGATTCACTCGAGGGCAGCTATGGATACATCTGGAAGAATTCGTCTCATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E424805" ref_strand="+" ref_description="SGN-E424805 [STM-44-I19]">
      <seq>tgaggacccatacacgtggtgagtcgttagttaccggtacaaattcttctaactccacctacccccaacgccaccccattcagcaggcagctgccatagcccgcctactgtatcggagttcggcgtgcatttgcttgctcaaacctgaacaaccatggctgctttgtgtggcaatagtatttggactcctcaagctcgaaattgtttccagcggggaataactagttctaattcgttaaagtttttaccttttcaagttaatcgttgtaagagattgtggagtaggtcattgaactgcagggttttgggggaaacggacgatgtgggttttgaagtgagtagtgccataaaagacgacctatttgttgggtttttcagagaagcatggccttattttcttgcacatcgaggaagcacgtttgttgttttaatctcagctgaaattgttgatagccctcatttggatcatcttctcatggatatctccctccttcatggtctgggaatcaaatttgttcttgtaccaggaactcatgttcagattgaccggcttctgactgaaaggggaagtgaggccaagtatgtaggccgctacagaattacagacactgattcactcgaggcagctatggatacatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="50045" stop="48145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49754" g_stop="49259" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49258" i_stop="49155" i_length="104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49154" g_stop="49067" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="566" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49066" i_stop="48520" i_length="547">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48519" g_stop="48445" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="641" r_length="75" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E424805" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.028" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E424805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49754" e_stop="49259"/>
          <exon e_start="49154" e_stop="49067"/>
          <exon e_start="48519" e_stop="48445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGTCAAACATATACGTGGCGAGTCGTTGGTTACCGGTATAAATTCTTCCAACTCCACCTACCCCCAACGCCACCCCATTCACCAGGCAGCTGCCATAGCCCGCTGCCGTCAAAAAGCCCACTACAGTATCGGAGTTCGGCGTGCATTTGCTTGCTCAAACCTGAGCGACCATGGCTGCTTTTTGTGGCAACAGTATTTGGACTCCTCAAGCTCGAAATTGTTTTCAGCGGGGAATAACTTGTTCTAATTCGTTAAAGTTTTTACCTTTTCAATTTAGTTGTTGTAAGAGATTGTGGGGTAGGTCATTGAAGTGCAGGGTTTTGGGCGAAACGGACGATGTGGGATTTGAAGTGAGTAGTGCCATAAAAGACGACCTATTTGTTGGTTTTTTCAGAGAAGCATGGCCTTATTTTCTTGCACATCGAGGAAGCACGTTTGTTGTTTTAATCTCAGCTGAAATTGTTGATAGCCCTCATTTGGATCATCTTCTCATGGTATGATTGTCTTCTTTTTTCTTTTCTTGTTCCTTAATTTCATTTTAATTGTCAGAGGTGCTGTTTGTTAGCTTTAGATAATCTTTTCTGCTGAATTATTGCAGGATATCTCCCTTCTTCATGGTCTGGGAATCAAATTTGTTCTTGTGCCAGGAACTCATGTTCAGATTGACCGGCTTCTGACTGAAAGGGGTGAGTGAAATTCTGATATATTCTATTTTTATGTTATTTCTTGTTATGGACAATGTAAATGTTTTTTTCTCTATTTCTGATATCGAGAGCAGGTATTTGTTAGTATTACTGTTTGAAATAAATATGTTATTCCTCTTTGCTGCTAACAGTTTTAGCATCATTTAGATACCTTATATATCAGAATTTATGATTTCTAAATCGAAGGTTATCTTTTTTTAGGAATTTCAGTTTTCATTCTCATTGTCTCAGAATGATTTTCTTTTCTAAAGATGCTAATGAAGTAATGCTGATTAGGACCAGTGGGGTTAAGTAGGTATGCACTTCTGTGTTCTCCTTTAGGCGATGGTATATGCTGGTATATGCGTCATTTGTATTTCAGAATAAATAAAAGTTGTAAAGGAACTCTACAGCTTTAATGTTAAATGGCATCGACATTTAATTTTGATTACTATATCTTCTTTTCTTTTGTTTCCAAATACTGATTTCATTTATCTTCTTACAAGAATATTCTAAGAAGCAAGCGATTTTTGTAACTTCTATTTAACAGGAAGTGAGGCCAAGTATGTAGGCCGCTACAGAATTACAGACCCTGATTCACTCGAGGCAGCTATGGATACATCCG</genome_strand>
        <mrna_strand>TGAG-GACCCATACACGTGGTGAGTCGTTAGTTACCGGTACAAATTCTTCTAACTCCACCTACCCCCAACGCCACCCCATTCAGCAGGCAGCTGCCATAG-CC-C-GCC-T-A---------CT---GTATCGGAGTTCGGCGTGCATTTGCTTGCTCAAACCTGAACAACCATGGCTGCTTTGTGTGGCAATAGTATTTGGACTCCTCAAGCTCGAAATTGTTTCCAGCGGGGAATAACTAGTTCTAATTCGTTAAAGTTTTTACCTTTTCAAGTTAATCGTTGTAAGAGATTGTGGAGTAGGTCATTGAACTGCAGGGTTTTGGGGGAAACGGACGATGTGGGTTTTGAAGTGAGTAGTGCCATAAAAGACGACCTATTTGTTGGGTTTTTCAGAGAAGCATGGCCTTATTTTCTTGCACATCGAGGAAGCACGTTTGTTGTTTTAATCTCAGCTGAAATTGTTGATAGCCCTCATTTGGATCATCTTCTCATG........................................................................................................GATATCTCCCTCCTTCATGGTCTGGGAATCAAATTTGTTCTTGTACCAGGAACTCATGTTCAGATTGACCGGCTTCTGACTGAAAGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGAGGCCAAGTATGTAGGCCGCTACAGAATTACAGACACTGATTCACTCGAGGCAGCTATGGATACATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453213" ref_strand="+" ref_description="SGN-E453213 [cSTS-19-C10]">
      <seq>tgaggacccatacacgtggtgagtcgttagttaccggtacaaattcttctaactccacctacccccaacgccaccccattcagcaggcagctgccatagcccgcctactgtatcggagttcggcgtgcatttgcttgctcaaacctgaacaaccatggctgctttgtgtggcaatagtatttggactcctcaagctcgaaattgtttccagcggggaataactagttctaattcgttaaagtttttaccttttcaagttaatcgttgtaagagattgtggagtaggtcattgaactgcagggttttgggggaaacggacgatgtgggttttgaagtgagtagtgccataaaagacgacctatttgttgggtttttcagagaagcatggccttattttcttgcacatcgaggaagcacgtttgttgttttaatctcagctgaaattgttgatagccctcatttggatcatcttctcatggatatctccctccttcatggtctgggaatcaaatttgttcttgtaccaggaactcatgttcagattgaccggcttctgactgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="50045" stop="48770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49754" g_stop="49259" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49258" i_stop="49155" i_length="104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49154" g_stop="49070" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="563" r_length="85" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E453213" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.032" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49754" e_stop="49259"/>
          <exon e_start="49154" e_stop="49070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGTCAAACATATACGTGGCGAGTCGTTGGTTACCGGTATAAATTCTTCCAACTCCACCTACCCCCAACGCCACCCCATTCACCAGGCAGCTGCCATAGCCCGCTGCCGTCAAAAAGCCCACTACAGTATCGGAGTTCGGCGTGCATTTGCTTGCTCAAACCTGAGCGACCATGGCTGCTTTTTGTGGCAACAGTATTTGGACTCCTCAAGCTCGAAATTGTTTTCAGCGGGGAATAACTTGTTCTAATTCGTTAAAGTTTTTACCTTTTCAATTTAGTTGTTGTAAGAGATTGTGGGGTAGGTCATTGAAGTGCAGGGTTTTGGGCGAAACGGACGATGTGGGATTTGAAGTGAGTAGTGCCATAAAAGACGACCTATTTGTTGGTTTTTTCAGAGAAGCATGGCCTTATTTTCTTGCACATCGAGGAAGCACGTTTGTTGTTTTAATCTCAGCTGAAATTGTTGATAGCCCTCATTTGGATCATCTTCTCATGGTATGATTGTCTTCTTTTTTCTTTTCTTGTTCCTTAATTTCATTTTAATTGTCAGAGGTGCTGTTTGTTAGCTTTAGATAATCTTTTCTGCTGAATTATTGCAGGATATCTCCCTTCTTCATGGTCTGGGAATCAAATTTGTTCTTGTGCCAGGAACTCATGTTCAGATTGACCGGCTTCTGACTGAAA</genome_strand>
        <mrna_strand>TGAG-GACCCATACACGTGGTGAGTCGTTAGTTACCGGTACAAATTCTTCTAACTCCACCTACCCCCAACGCCACCCCATTCAGCAGGCAGCTGCCATAG-CC-C-GCC-T-A---------CT---GTATCGGAGTTCGGCGTGCATTTGCTTGCTCAAACCTGAACAACCATGGCTGCTTTGTGTGGCAATAGTATTTGGACTCCTCAAGCTCGAAATTGTTTCCAGCGGGGAATAACTAGTTCTAATTCGTTAAAGTTTTTACCTTTTCAAGTTAATCGTTGTAAGAGATTGTGGAGTAGGTCATTGAACTGCAGGGTTTTGGGGGAAACGGACGATGTGGGTTTTGAAGTGAGTAGTGCCATAAAAGACGACCTATTTGTTGGGTTTTTCAGAGAAGCATGGCCTTATTTTCTTGCACATCGAGGAAGCACGTTTGTTGTTTTAATCTCAGCTGAAATTGTTGATAGCCCTCATTTGGATCATCTTCTCATG........................................................................................................GATATCTCCCTCCTTCATGGTCTGGGAATCAAATTTGTTCTTGTACCAGGAACTCATGTTCAGATTGACCGGCTTCTGACTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E474213" ref_strand="+" ref_description="SGN-E474213 [cSTB-35-F8]">
      <seq>cttccaactccacccacccccaacgccactccattcagcaggcagctgccatagcccgtcgccgtcaaaaagcccactacagtatcggagttcggcgtgcatttgcttcctcaaacctgagcaaccatggctgctttgtgtggcaatagtatttggactcctcaagctcgaaattgttttcagcggggaataactagttctaattcgttaaagtttttatcttttcaagttaatcgttgtaagagattgtggagtaggccattgaagtgcagggttttgggggaaacggacgatgtgggttttgaagtgagtagtgccataaaagacgatctatttgttgggtttttcagagaagcatggccttattttcttgcacatcgaggaagcacgtttgttgttttaatctcagctgaaattgttgatagccctcatttggatcatcttctcatggatatctccctccttcatggtctgggaatcaaatttgttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="50008" stop="48813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49708" g_stop="49259" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49258" i_stop="49155" i_length="104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49154" g_stop="49113" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="492" r_length="42" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E474213" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49708" e_stop="49259"/>
          <exon e_start="49154" e_stop="49113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCAACTCCACCTACCCCCAACGCCACCCCATTCACCAGGCAGCTGCCATAGCCCGCTGCCGTCAAAAAGCCCACTACAGTATCGGAGTTCGGCGTGCATTTGCTTGCTCAAACCTGAGCGACCATGGCTGCTTTTTGTGGCAACAGTATTTGGACTCCTCAAGCTCGAAATTGTTTTCAGCGGGGAATAACTTGTTCTAATTCGTTAAAGTTTTTACCTTTTCAATTTAGTTGTTGTAAGAGATTGTGGGGTAGGTCATTGAAGTGCAGGGTTTTGGGCGAAACGGACGATGTGGGATTTGAAGTGAGTAGTGCCATAAAAGACGACCTATTTGTTGGTTTTTTCAGAGAAGCATGGCCTTATTTTCTTGCACATCGAGGAAGCACGTTTGTTGTTTTAATCTCAGCTGAAATTGTTGATAGCCCTCATTTGGATCATCTTCTCATGGTATGATTGTCTTCTTTTTTCTTTTCTTGTTCCTTAATTTCATTTTAATTGTCAGAGGTGCTGTTTGTTAGCTTTAGATAATCTTTTCTGCTGAATTATTGCAGGATATCTCCCTTCTTCATGGTCTGGGAATCAAATTTGTTCTT</genome_strand>
        <mrna_strand>CTTCCAACTCCACCCACCCCCAACGCCACTCCATTCAGCAGGCAGCTGCCATAGCCCGTCGCCGTCAAAAAGCCCACTACAGTATCGGAGTTCGGCGTGCATTTGCTTCCTCAAACCTGAGCAACCATGGCTGCTTTGTGTGGCAATAGTATTTGGACTCCTCAAGCTCGAAATTGTTTTCAGCGGGGAATAACTAGTTCTAATTCGTTAAAGTTTTTATCTTTTCAAGTTAATCGTTGTAAGAGATTGTGGAGTAGGCCATTGAAGTGCAGGGTTTTGGGGGAAACGGACGATGTGGGTTTTGAAGTGAGTAGTGCCATAAAAGACGATCTATTTGTTGGGTTTTTCAGAGAAGCATGGCCTTATTTTCTTGCACATCGAGGAAGCACGTTTGTTGTTTTAATCTCAGCTGAAATTGTTGATAGCCCTCATTTGGATCATCTTCTCATG........................................................................................................GATATCTCCCTCCTTCATGGTCTGGGAATCAAATTTGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314946" ref_strand="+" ref_description="SGN-E314946 [cTOA-31-E17]">
      <seq>attcttccaactccacctacccccaacgccaccccattcaccaggcagctgccatagcccgctgccgtcaaaaagcccactacagtatcggagttcggcgtgcatttgcttgctcaaacctgagcgaccatggctgctttttgtggcaacagtatttggactcctcaagctcgaaattgttttcagcggggaataacttgttctaattcgttaaagtttttaccttttcaatttagttgttgtaagagattgtggggtaggtcattgaagtgcagggttttgggcgnaacggacgatgtgggatttgaagtgagtagtgccataaaagacgacctatttgttggttttttcagagaagcatggccttattttcttgcacatcgaggaagcacgtttgttgttttaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="50011" stop="49003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49711" g_stop="49303" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E314946" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49711" e_stop="49303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTCCAACTCCACCTACCCCCAACGCCACCCCATTCACCAGGCAGCTGCCATAGCCCGCTGCCGTCAAAAAGCCCACTACAGTATCGGAGTTCGGCGTGCATTTGCTTGCTCAAACCTGAGCGACCATGGCTGCTTTTTGTGGCAACAGTATTTGGACTCCTCAAGCTCGAAATTGTTTTCAGCGGGGAATAACTTGTTCTAATTCGTTAAAGTTTTTACCTTTTCAATTTAGTTGTTGTAAGAGATTGTGGGGTAGGTCATTGAAGTGCAGGGTTTTGGGCGAAACGGACGATGTGGGATTTGAAGTGAGTAGTGCCATAAAAGACGACCTATTTGTTGGTTTTTTCAGAGAAGCATGGCCTTATTTTCTTGCACATCGAGGAAGCACGTTTGTTGTTTTAATCT</genome_strand>
        <mrna_strand>ATTCTTCCAACTCCACCTACCCCCAACGCCACCCCATTCACCAGGCAGCTGCCATAGCCCGCTGCCGTCAAAAAGCCCACTACAGTATCGGAGTTCGGCGTGCATTTGCTTGCTCAAACCTGAGCGACCATGGCTGCTTTTTGTGGCAACAGTATTTGGACTCCTCAAGCTCGAAATTGTTTTCAGCGGGGAATAACTTGTTCTAATTCGTTAAAGTTTTTACCTTTTCAATTTAGTTGTTGTAAGAGATTGTGGGGTAGGTCATTGAAGTGCAGGGTTTTGGGCGNAACGGACGATGTGGGATTTGAAGTGAGTAGTGCCATAAAAGACGACCTATTTGTTGGTTTTTTCAGAGAAGCATGGCCTTATTTTCTTGCACATCGAGGAAGCACGTTTGTTGTTTTAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281191" ref_strand="+" ref_description="SGN-E281191 [cLEL-1-A1](-)">
      <seq>tcccacatcgtccgtttcgcccaaaaccctgcacttcaatgacctaccccacaatctcttacaacaactaaattgaaaaggtaaaaactttaacgaattagaacaagttattccccgctgaaaacaatttcgagcttgaggagtccaaatactgttgccacaaaaagcagccatggtcgctcaggtttgagcaagcaaatgcacgccgaactccgatactgtagtgggctttttgacggcagcgggctatggcagctgcctggtgaatggggtggcgttgggggtaggtggagttggaagaatttataccggtaaccaacgactcgccacgtatatgtttgactggtgcatatgttcaataataactttggccgtcctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="49109" stop="50084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49409" g_stop="49791" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E281191" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49409" e_stop="49791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCACATCGTCCGTTTCGCCCAAAACCCTGCACTTCAATGACCTACCCCACAATCTCTTACAACAACTAAATTGAAAAGGTAAAAACTTTAACGAATTAGAACAAGTTATTCCCCGCTGAAAACAATTTCGAGCTTGAGGAGTCCAAATACTGTTGCCACAAAAAGCAGCCATGGTCGCTCAGGTTTGAGCAAGCAAATGCACGCCGAACTCCGATACTGTAGTGGGCTTTTTGACGGCAGCGGGCTATGGCAGCTGCCTGGTGAATGGGGTGGCGTTGGGGGTAGGTGGAGTTGGAAGAATTTATACCGGTAACCAACGACTCGCCACGTATATGTTTGACTGGTGCATATGTTCAATAATAACTTTGGCCGTCAGTCGGC</genome_strand>
        <mrna_strand>TCCCACATCGTCCGTTTCGCCCAAAACCCTGCACTTCAATGACCTACCCCACAATCTCTTACAACAACTAAATTGAAAAGGTAAAAACTTTAACGAATTAGAACAAGTTATTCCCCGCTGAAAACAATTTCGAGCTTGAGGAGTCCAAATACTGTTGCCACAAAAAGCAGCCATGGTCGCTCAGGTTTGAGCAAGCAAATGCACGCCGAACTCCGATACTGTAGTGGGCTTTTTGACGGCAGCGGGCTATGGCAGCTGCCTGGTGAATGGGGTGGCGTTGGGGGTAGGTGGAGTTGGAAGAATTTATACCGGTAACCAACGACTCGCCACGTATATGTTTGACTGGTGCATATGTTCAATAATAACTTTGGCCGTCCTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314914" ref_strand="+" ref_description="SGN-E314914 [cTOA-31-E18]">
      <seq>attcttccaactccacctacccccaacgccaccccattcaccaggcagctgccatagcccgctgccgtcaaaaagcccactacagtatcggagttcggcgtgcatttgcttgctcaaacctgagcgaccatggctgctttttgtggcaacagtatttggactccctcaagctcgaaattgttttcaacggggaataacttgttctaattcgctaaaggttttaccctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="50011" stop="49183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49711" g_stop="49483" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E314914" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>229</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E314914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49711" e_stop="49483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTCCAACTCCACCTACCCCCAACGCCACCCCATTCACCAGGCAGCTGCCATAGCCCGCTGCCGTCAAAAAGCCCACTACAGTATCGGAGTTCGGCGTGCATTTGCTTGCTCAAACCTGAGCGACCATGGCTGCTTTTTGTGGCAACAGTATTTGGACT-CCTCAAGCTCGAAATTGTTTTCAGCGGGGAATAACTTGTTCTAATTCGTTAAAGTTTTTACCTTTTC</genome_strand>
        <mrna_strand>ATTCTTCCAACTCCACCTACCCCCAACGCCACCCCATTCACCAGGCAGCTGCCATAGCCCGCTGCCGTCAAAAAGCCCACTACAGTATCGGAGTTCGGCGTGCATTTGCTTGCTCAAACCTGAGCGACCATGGCTGCTTTTTGTGGCAACAGTATTTGGACTCCCTCAAGCTCGAAATTGTTTTCAACGGGGAATAACTTGTTCTAATTCGCTAAAGGTTTTACCCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E558438" ref_strand="+" ref_description="SGN-E558438 [17778]">
      <seq>ctaatttcagatcttctactatgataatgtagattcaacactccaattttcctatgattgttgccttccttctctttgtagctatagctctgaagctatggaaaaaatccaagattcagtataaactccctccaggtcctagaaaacttccacttattgggaatttgcatcagttatctagctcattacctcaccatactttgaagaatttgtcaaacaaatatggtcccatgatgcacctacagcttggtgaagtttctgctgttatagtatcatcaccacaagtggcaaaagaggtactgaagactcatgacttaatctttgctaataggccacaacttctttctgtacagattctaagcaacaacagccccaccctttcattctctccttatggggctaattggagacagcttagaaaagtatgtgtcttggagcttttaagtgcaaagcgcgttcaatcatttgagtcaatcaggggaagaggaagctgagaatcttattgaagcaatttcattgatacagccacaagttcctattgatattagtgaaatgatattctcgatgacgaataacataactgccaggggcagcctttggtaagaaatgcaaacacaaagatgagtttattaaagctatgaaaacaattacagagctatcaggaggttttgatataccagatttatttccttccttgaaaattttccactcatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="51174" stop="52484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51470" g_stop="52184" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="715" r_length="715" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E558438" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51470" e_stop="52184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATACTCTAGATCTTCTACTGTGGTAATGGAGATTCAACACTCCAATTTTGCTATGCTTATTGCCTTCCTTCTCTTTGTAGCCATAGCTCTGAAGCTATGGAAAAAATCCAAAATTCAGTATAAACTCCCTCCAGGTCCTAGAAAACTACCATTTATTGGGAATTTGCATCAATTATCTAGCTCATTGCCTCACCATACTTTTAAGAATTTGTCAAACAAATATGGTCCCATGATGCACCTACAACTTGGTGAAGTTTCAGCTGTTATAGTATCATCACCACAAGTGGCAAAAGAGGTACTGAAGACTCATGACTTAATCTTTGCTAATAGGCCACAACTTCTTTCTGTACAGATTCTAAGCAACAACAGTCCTACCCTTTCATTCTCTCCTTATGGGGCTAATTGGAGACAGCTTAGAAAAGTATGTGTCTTGGAGCTTTTAAGTGCAAAGCGGGTTCAATCATTTGAGTCAAT-AAGGGAAGAGGAAGTTGATAATCTTATTGAAGCAATTTCATTGATACAGCCACAAGTTCCTATTGATATTAGTGAAATGATATTCTCGATGACGAATAACATAACTGCCA-GGGCAGCCTTTGGTAAGAAATGCAAACACAAAGATGAGTTTATTAAAGCTATGAAAACAATTACAGAGCTATCAGGAGGTTTTGATATACCAGATTTATTTCCTTCCTTGAAAATTTTCCACTCATTA</genome_strand>
        <mrna_strand>CTAAT-TTC-AGATCTTCTACTATGATAATGTAGATTCAACACTCCAATTTTCCTATGATTGTTGCCTTCCTTCTCTTTGTAGCTATAGCTCTGAAGCTATGGAAAAAATCCAAGATTCAGTATAAACTCCCTCCAGGTCCTAGAAAACTTCCACTTATTGGGAATTTGCATCAGTTATCTAGCTCATTACCTCACCATACTTTGAAGAATTTGTCAAACAAATATGGTCCCATGATGCACCTACAGCTTGGTGAAGTTTCTGCTGTTATAGTATCATCACCACAAGTGGCAAAAGAGGTACTGAAGACTCATGACTTAATCTTTGCTAATAGGCCACAACTTCTTTCTGTACAGATTCTAAGCAACAACAGCCCCACCCTTTCATTCTCTCCTTATGGGGCTAATTGGAGACAGCTTAGAAAAGTATGTGTCTTGGAGCTTTTAAGTGCAAAGCGCGTTCAATCATTTGAGTCAATCAGGGGAAGAGGAAGCTGAGAATCTTATTGAAGCAATTTCATTGATACAGCCACAAGTTCCTATTGATATTAGTGAAATGATATTCTCGATGACGAATAACATAACTGCCAGGGGCAGCCTTTGGTAAGAAATGCAAACACAAAGATGAGTTTATTAAAGCTATGAAAACAATTACAGAGCTATCAGGAGGTTTTGATATACCAGATTTATTTCCTTCCTTGAAAATTTTCCACTCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E463616" ref_strand="+" ref_description="SGN-E463616 [cPRO-15-A10]">
      <seq>ctagatttcagatcttctactatgataatggagattcaacactccaattttcctatgattgttgccttccttctctttgtagctatagctctgaagctatggaaaaaatccaagattcagtataaactccctccaggtcctagaaaacttccacttattgggaatttgcatcagttatctagcttcattacctccaccatactttgaagaattttgtcaaacaatatgggtccatgatgcacctacagcttgggtgaaattttctgctgttatagtatcatcacccacaagtggcaaaagaggtactgaagactcatgacttaatctttgctaatagggccacaacttctttctgtacagattctaagcaacaacagccccccccctttcattctctccttatggggctaattggagacagcttagaaaagtatgtgtcttggagcttttaagtgcaaagcgcgttcaatcatttgagtcaatcagggaagaagaagctgagaatcttatttgaagcatttcattgatacagccccacagtcctattgatattagtgaaatgatattctcgatgacgaataacataact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="51177" stop="52352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51470" g_stop="52052" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E463616" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51470" e_stop="52052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATACTCTAGATCTTCTACTGTGGTAATGGAGATTCAACACTCCAATTTTGCTATGCTTATTGCCTTCCTTCTCTTTGTAGCCATAGCTCTGAAGCTATGGAAAAAATCCAAAATTCAGTATAAACTCCCTCCAGGTCCTAGAAAACTACCATTTATTGGGAATTTGCATCAATTATCTAGC-TCATTGCCT-CACCATACTTTTAAGAA-TTTGTCAAACAAATATGGTCCCATGATGCACCTACAACTT-GGTG-AAGTTTCAGCTGTTATAGTATCATCA-CCACAAGTGGCAAAAGAGGTACTGAAGACTCATGACTTAATCTTTGCTAATA-GGCCACAACTTCTTTCTGTACAGATTCTAAGCAACAACAG-TCCTACCCTTTCATTCTCTCCTTATGGGGCTAATTGGAGACAGCTTAGAAAAGTATGTGTCTTGGAGCTTTTAAGTGCAAAGCGGGTTCAATCATTTGAGTCAATAAGGGAAGAGGAAGTTGATAATCTTA-TTGAAGCAATTTCATTGATACAGCCACAAGTTCCTATTGATATTAGTGAAATGATATTCTCGATGACGAATAACATAACT</genome_strand>
        <mrna_strand>CT-AGATTTCAGATCTTCTACTATGATAATGGAGATTCAACACTCCAATTTTCCTATGATTGTTGCCTTCCTTCTCTTTGTAGCTATAGCTCTGAAGCTATGGAAAAAATCCAAGATTCAGTATAAACTCCCTCCAGGTCCTAGAAAACTTCCACTTATTGGGAATTTGCATCAGTTATCTAGCTTCATTACCTCCACCATACTTTGAAGAATTTTGTCAAAC-AATATGGGTCCATGATGCACCTACAGCTTGGGTGAAATTTTCTGCTGTTATAGTATCATCACCCACAAGTGGCAAAAGAGGTACTGAAGACTCATGACTTAATCTTTGCTAATAGGGCCACAACTTCTTTCTGTACAGATTCTAAGCAACAACAGCCCCCCCCCTTTCATTCTCTCCTTATGGGGCTAATTGGAGACAGCTTAGAAAAGTATGTGTCTTGGAGCTTTTAAGTGCAAAGCGCGTTCAATCATTTGAGTCAATCAGGGAAGAAGAAGCTGAGAATCTTATTTGAAGC-ATTTCATTGATACAGCCCCACAGTCCTATTGATATTAGTGAAATGATATTCTCGATGACGAATAACATAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E458612" ref_strand="+" ref_description="SGN-E458612 [cPRO-6-E18]">
      <seq>ctagatttcagatcttctactatgataatggagattcaacactccaattttcctatgattgttgccttccttctctttgtagctatagctctgaagctatggaaaaaatccaagattcagtataaactccctccaggtcctagaaaacttccacttattgggaatttgcatcagttatctagctcattacctcaccatactttgaagaatttgtcaaacaaatatggtcccatgatgcacctacagcttggtgaagtttctgctgttatagtatcatcaccacaagtggcaaaagaggtactgaagactcatgacttaatctttgctaataggccacaacttctttctgtacagattctaagcaacaacagccccaccctttcattctctccttatggggctaattggagacagcttagaaaagtatgtgtcttggagcttttaagtgcaaagcgcgttcaatcatttgagtcaatcagggaagaagaagctgagaatcttattgaagcaatttcattgatacagccacaagttcctattgatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="51177" stop="52316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51470" g_stop="52016" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E458612" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51470" e_stop="52016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATACTCTAGATCTTCTACTGTGGTAATGGAGATTCAACACTCCAATTTTGCTATGCTTATTGCCTTCCTTCTCTTTGTAGCCATAGCTCTGAAGCTATGGAAAAAATCCAAAATTCAGTATAAACTCCCTCCAGGTCCTAGAAAACTACCATTTATTGGGAATTTGCATCAATTATCTAGCTCATTGCCTCACCATACTTTTAAGAATTTGTCAAACAAATATGGTCCCATGATGCACCTACAACTTGGTGAAGTTTCAGCTGTTATAGTATCATCACCACAAGTGGCAAAAGAGGTACTGAAGACTCATGACTTAATCTTTGCTAATAGGCCACAACTTCTTTCTGTACAGATTCTAAGCAACAACAGTCCTACCCTTTCATTCTCTCCTTATGGGGCTAATTGGAGACAGCTTAGAAAAGTATGTGTCTTGGAGCTTTTAAGTGCAAAGCGGGTTCAATCATTTGAGTCAATAAGGGAAGAGGAAGTTGATAATCTTATTGAAGCAATTTCATTGATACAGCCACAAGTTCCTATTGATATT</genome_strand>
        <mrna_strand>CT-AGATTTCAGATCTTCTACTATGATAATGGAGATTCAACACTCCAATTTTCCTATGATTGTTGCCTTCCTTCTCTTTGTAGCTATAGCTCTGAAGCTATGGAAAAAATCCAAGATTCAGTATAAACTCCCTCCAGGTCCTAGAAAACTTCCACTTATTGGGAATTTGCATCAGTTATCTAGCTCATTACCTCACCATACTTTGAAGAATTTGTCAAACAAATATGGTCCCATGATGCACCTACAGCTTGGTGAAGTTTCTGCTGTTATAGTATCATCACCACAAGTGGCAAAAGAGGTACTGAAGACTCATGACTTAATCTTTGCTAATAGGCCACAACTTCTTTCTGTACAGATTCTAAGCAACAACAGCCCCACCCTTTCATTCTCTCCTTATGGGGCTAATTGGAGACAGCTTAGAAAAGTATGTGTCTTGGAGCTTTTAAGTGCAAAGCGCGTTCAATCATTTGAGTCAATCAGGGAAGAAGAAGCTGAGAATCTTATTGAAGCAATTTCATTGATACAGCCACAAGTTCCTATTGATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E447594" ref_strand="+" ref_description="SGN-E447594 [cSTA-27-F21]">
      <seq>ctagatttcagatcttctactatgataatggagattcaacactccaattttcctatgattgttgccttccttctctttgtagctatagctctgaagctatggaaaaaatccaagattcagtataaactccctccaggtcctagaaaacttccacttattgggaatttgcatcagttatctagctcattacctcaccatactttgaagaatttgtcaaacaaatatggtcccatgatgcacctacagcttggtgaagtttctgctgttatagtatcatcaccacaagtggcaaaagaggtactgaagactcatgacttaatctttgctaataggccacaacttctttctgtacagattctaagcaacaacagccccaccctttcattctctccttatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="51177" stop="52169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51470" g_stop="51869" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E447594" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E447594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51470" e_stop="51869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATACTCTAGATCTTCTACTGTGGTAATGGAGATTCAACACTCCAATTTTGCTATGCTTATTGCCTTCCTTCTCTTTGTAGCCATAGCTCTGAAGCTATGGAAAAAATCCAAAATTCAGTATAAACTCCCTCCAGGTCCTAGAAAACTACCATTTATTGGGAATTTGCATCAATTATCTAGCTCATTGCCTCACCATACTTTTAAGAATTTGTCAAACAAATATGGTCCCATGATGCACCTACAACTTGGTGAAGTTTCAGCTGTTATAGTATCATCACCACAAGTGGCAAAAGAGGTACTGAAGACTCATGACTTAATCTTTGCTAATAGGCCACAACTTCTTTCTGTACAGATTCTAAGCAACAACAGTCCTACCCTTTCATTCTCTCCTTATGGG</genome_strand>
        <mrna_strand>CT-AGATTTCAGATCTTCTACTATGATAATGGAGATTCAACACTCCAATTTTCCTATGATTGTTGCCTTCCTTCTCTTTGTAGCTATAGCTCTGAAGCTATGGAAAAAATCCAAGATTCAGTATAAACTCCCTCCAGGTCCTAGAAAACTTCCACTTATTGGGAATTTGCATCAGTTATCTAGCTCATTACCTCACCATACTTTGAAGAATTTGTCAAACAAATATGGTCCCATGATGCACCTACAGCTTGGTGAAGTTTCTGCTGTTATAGTATCATCACCACAAGTGGCAAAAGAGGTACTGAAGACTCATGACTTAATCTTTGCTAATAGGCCACAACTTCTTTCTGTACAGATTCTAAGCAACAACAGCCCCACCCTTTCATTCTCTCCTTATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E571884" ref_strand="+" ref_description="SGN-E571884 [30950]">
      <seq>tcagatcttctactatgataatggagattcaacactccaattttcctatgattgttgccttccttctctttgtagctatagctctgaagctatggaaaaaatccaagattcagtataaactccctccaggtcctagaaaacttccacttattgggaatttgcatcagttatctagctcattacctcaccatactttgaagaatttgtcaaacaaatatggtcccatgatgcacctacagcttggtgaagtttctgctgttatagtatcatcaccacaagtggcaaaagaggtactgaagactcatgacttaatctttgctaataggccacaacttctttctgtacagattctaagcaacaacagccccaccctttcattctctccttatggggctaattggagacagcttagaaaagtatgtgtcttggagcttttaagtgcaaagcgcgttcaatcatttgagtcaatcagggaagaggaagctgagaatcttattgaagcaatttcattgatacagccacaagttcctattgatattagtgaaatgatattctcgatgacgaataacataactgccagggcagcctttggtaagaaatgcaaacacaaagatgagttattaagctatgaaaacaattacagagctatcaggaggtttgatataccagatttatttccttccttgaaaaatttccactcatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="51180" stop="52484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51477" g_stop="52184" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="704" r_length="704" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E571884" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E571884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51477" e_stop="52184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAGATCTTCTACTGTGGTAATGGAGATTCAACACTCCAATTTTGCTATGCTTATTGCCTTCCTTCTCTTTGTAGCCATAGCTCTGAAGCTATGGAAAAAATCCAAAATTCAGTATAAACTCCCTCCAGGTCCTAGAAAACTACCATTTATTGGGAATTTGCATCAATTATCTAGCTCATTGCCTCACCATACTTTTAAGAATTTGTCAAACAAATATGGTCCCATGATGCACCTACAACTTGGTGAAGTTTCAGCTGTTATAGTATCATCACCACAAGTGGCAAAAGAGGTACTGAAGACTCATGACTTAATCTTTGCTAATAGGCCACAACTTCTTTCTGTACAGATTCTAAGCAACAACAGTCCTACCCTTTCATTCTCTCCTTATGGGGCTAATTGGAGACAGCTTAGAAAAGTATGTGTCTTGGAGCTTTTAAGTGCAAAGCGGGTTCAATCATTTGAGTCAATAAGGGAAGAGGAAGTTGATAATCTTATTGAAGCAATTTCATTGATACAGCCACAAGTTCCTATTGATATTAGTGAAATGATATTCTCGATGACGAATAACATAACTGCCAGGGCAGCCTTTGGTAAGAAATGCAAACACAAAGATGAGTTTATTAAAGCTATGAAAACAATTACAGAGCTATCAGGAGGTTTTGATATACCAGATTTATTTCCTTCCTTGAAAATTTTCCACTCATTA</genome_strand>
        <mrna_strand>TC-AGATCTTCTACTATGATAATGGAGATTCAACACTCCAATTTTCCTATGATTGTTGCCTTCCTTCTCTTTGTAGCTATAGCTCTGAAGCTATGGAAAAAATCCAAGATTCAGTATAAACTCCCTCCAGGTCCTAGAAAACTTCCACTTATTGGGAATTTGCATCAGTTATCTAGCTCATTACCTCACCATACTTTGAAGAATTTGTCAAACAAATATGGTCCCATGATGCACCTACAGCTTGGTGAAGTTTCTGCTGTTATAGTATCATCACCACAAGTGGCAAAAGAGGTACTGAAGACTCATGACTTAATCTTTGCTAATAGGCCACAACTTCTTTCTGTACAGATTCTAAGCAACAACAGCCCCACCCTTTCATTCTCTCCTTATGGGGCTAATTGGAGACAGCTTAGAAAAGTATGTGTCTTGGAGCTTTTAAGTGCAAAGCGCGTTCAATCATTTGAGTCAATCAGGGAAGAGGAAGCTGAGAATCTTATTGAAGCAATTTCATTGATACAGCCACAAGTTCCTATTGATATTAGTGAAATGATATTCTCGATGACGAATAACATAACTGCCAGGGCAGCCTTTGGTAAGAAATGCAAACACAAAGATGAG-TTATT-AAGCTATGAAAACAATTACAGAGCTATCAGGAGG-TTTGATATACCAGATTTATTTCCTTCCTTGAAAAATTTCCACTCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E449586" ref_strand="+" ref_description="SGN-E449586 [cSTS-6-N18]">
      <seq>ctgatactctagatttcagatcttctactatgataatggagattcaacactccaattttcctatgattgttgccttccttctctttgtagctatagctctgaagctatggaaaaaatccaagattcagtataaactccctccaggtcctagaaaacttccacttattgggaatttgcatcagttatctagctcattacctcaccatactttgaagaatttgtcaaacaaatatggtcccatgatgcacctacagcttggtgaagtttctgctgttatagtatcatcaccacaagtggcaaaagaggtactgaagactcatgacttaatctttgctaataggccacaacttctttctgtacagattctaagcaacaacagccccaccctttcattctctccttatggggctaattggagacagcttagaaaagtatgtgtcttggagcttttaagtgcaaagcgcgttcaatcatttgagtcaatcagggaagaggaagctgagaatcttattgaagcaatttcattgatacagccacaagttcctattgatattagtgaaatgatattctcgatgacgaataacataact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="51177" stop="52352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51482" g_stop="52052" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="590" r_length="571" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E449586" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51482" e_stop="52052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCTACTGTGGTAATGGAGATTCAACACTCCAATTTTGCTATGCTTATTGCCTTCCTTCTCTTTGTAGCCATAGCTCTGAAGCTATGGAAAAAATCCAAAATTCAGTATAAACTCCCTCCAGGTCCTAGAAAACTACCATTTATTGGGAATTTGCATCAATTATCTAGCTCATTGCCTCACCATACTTTTAAGAATTTGTCAAACAAATATGGTCCCATGATGCACCTACAACTTGGTGAAGTTTCAGCTGTTATAGTATCATCACCACAAGTGGCAAAAGAGGTACTGAAGACTCATGACTTAATCTTTGCTAATAGGCCACAACTTCTTTCTGTACAGATTCTAAGCAACAACAGTCCTACCCTTTCATTCTCTCCTTATGGGGCTAATTGGAGACAGCTTAGAAAAGTATGTGTCTTGGAGCTTTTAAGTGCAAAGCGGGTTCAATCATTTGAGTCAATAAGGGAAGAGGAAGTTGATAATCTTATTGAAGCAATTTCATTGATACAGCCACAAGTTCCTATTGATATTAGTGAAATGATATTCTCGATGACGAATAACATAACT</genome_strand>
        <mrna_strand>ATCTTCTACTATGATAATGGAGATTCAACACTCCAATTTTCCTATGATTGTTGCCTTCCTTCTCTTTGTAGCTATAGCTCTGAAGCTATGGAAAAAATCCAAGATTCAGTATAAACTCCCTCCAGGTCCTAGAAAACTTCCACTTATTGGGAATTTGCATCAGTTATCTAGCTCATTACCTCACCATACTTTGAAGAATTTGTCAAACAAATATGGTCCCATGATGCACCTACAGCTTGGTGAAGTTTCTGCTGTTATAGTATCATCACCACAAGTGGCAAAAGAGGTACTGAAGACTCATGACTTAATCTTTGCTAATAGGCCACAACTTCTTTCTGTACAGATTCTAAGCAACAACAGCCCCACCCTTTCATTCTCTCCTTATGGGGCTAATTGGAGACAGCTTAGAAAAGTATGTGTCTTGGAGCTTTTAAGTGCAAAGCGCGTTCAATCATTTGAGTCAATCAGGGAAGAGGAAGCTGAGAATCTTATTGAAGCAATTTCATTGATACAGCCACAAGTTCCTATTGATATTAGTGAAATGATATTCTCGATGACGAATAACATAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E588913" ref_strand="+" ref_description="SGN-E588913 [42476]">
      <seq>gttcaactctacagcaaaaaggggtagctgatactctagatttcagatcttctactatgataatggagattcaacactccaattttcctatgcttattgccttccttctctttgtagccatagctctgaagctatggaaaaaatccaagattcagtataaactccctccaggtcctagaaaacttccacttattgggaatttgcatcagttatctaattcattgcctcaccatactttgaagaatttgtcaaagcaaatatggtcccatgatgcacctacaacttggtcgaagtttctgctgttatagtatcatcaccacaagtggcaaaagaggtactgaagactcatgacataatctttgctaataggccacaacttctttctgtacagattctaagcaacaacaggcccacccttgcattctctccttatggggctaattggagacagcttagaaaagtatgtgtcttggagcttgtaagtgcaaagcgcgttcagtcatttgagtcaatcagggaagaggaagttgagaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="51144" stop="52269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51482" g_stop="51969" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="536" r_length="490" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E588913" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E588913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51482" e_stop="51969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTCTACTGTGGTAATGGAGATTCAACACTCCAATTTTGCTATGCTTATTGCCTTCCTTCTCTTTGTAGCCATAGCTCTGAAGCTATGGAAAAAATCCAAAATTCAGTATAAACTCCCTCCAGGTCCTAGAAAACTACCATTTATTGGGAATTTGCATCAATTATCTAGCTCATTGCCTCACCATACTTTTAAGAATTTGTCAAA-CAAATATGGTCCCATGATGCACCTACAACTTGGT-GAAGTTTCAGCTGTTATAGTATCATCACCACAAGTGGCAAAAGAGGTACTGAAGACTCATGACTTAATCTTTGCTAATAGGCCACAACTTCTTTCTGTACAGATTCTAAGCAACAACAGTCCTACCCTTTCATTCTCTCCTTATGGGGCTAATTGGAGACAGCTTAGAAAAGTATGTGTCTTGGAGCTTTTAAGTGCAAAGCGGGTTCAATCATTTGAGTCAATAAGGGAAGAGGAAGTTGATAATC</genome_strand>
        <mrna_strand>ATCTTCTACTATGATAATGGAGATTCAACACTCCAATTTTCCTATGCTTATTGCCTTCCTTCTCTTTGTAGCCATAGCTCTGAAGCTATGGAAAAAATCCAAGATTCAGTATAAACTCCCTCCAGGTCCTAGAAAACTTCCACTTATTGGGAATTTGCATCAGTTATCTAATTCATTGCCTCACCATACTTTGAAGAATTTGTCAAAGCAAATATGGTCCCATGATGCACCTACAACTTGGTCGAAGTTTCTGCTGTTATAGTATCATCACCACAAGTGGCAAAAGAGGTACTGAAGACTCATGACATAATCTTTGCTAATAGGCCACAACTTCTTTCTGTACAGATTCTAAGCAACAACAGGCCCACCCTTGCATTCTCTCCTTATGGGGCTAATTGGAGACAGCTTAGAAAAGTATGTGTCTTGGAGCTTGTAAGTGCAAAGCGCGTTCAGTCATTTGAGTCAATCAGGGAAGAGGAAGTTGAGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E459794" ref_strand="+" ref_description="SGN-E459794 [cPRO-28-P22]">
      <seq>gttttacttagggttcaagaaagtggtgatttagaaatccccatatcaagaaacactctcaaatctgtcattttggaaatcttcatagggggaacagacacatcatccacagttttagagtgggctatttcagaaatgatgaagaatccacaagtgatggaaaaagcacaagctgaggtgagacgggttttcaaagggaaaagtaaaattacagaatcggaaattcaaaagctagattatatgaaattggttatcaaagagacactacgaatgcatccaccagcaccgttgttactaccaagagaagctatagaaaaatgtgatattggtggctatgaaatacctgccaaaaccaaagtcatcatcaatgcatgggcaataggtagacatccagagcactggaaaaatgctgaatgctttgaaccagaaagattccaagattcagacttggatttcattgggactaatcttgagtacataccatttggaggtggcagaaggatatgtccagggacattatttggaattgcgaatgttgaacttccacttgccaaattactatttcatttcgactggaaactccctgatggaattgaagcaagtaaccttgacatgacagagacttttggtgcaacagtagggaggaagaaatgattgtatttggttgcaaaaccttatatttccaatcccnagactgatgacttatgcacatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="52017" stop="53656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52317" g_stop="52391" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52392" i_stop="52729" i_length="338">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52730" g_stop="53362" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="707" r_length="632" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E459794" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52317" e_stop="52391"/>
          <exon e_start="52730" e_stop="53362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTACTTAGGGTTCAAGAAAGTGGTGATTTAGAAATCCCCATATCAAGAAACACTCTCAAATCTGTCATTTTGGTATGTTCTTTCAACCTTATAAAATCCCCTTTTCTAAAACAAGCCGTGTTTTAGTTGTTTGCAAGTAACACTTTTTGGAACATCATATTATGTTTGTGTCAACTCAATCACACAGAAAAATATCTGCTAACTAGAAGGAAATTATACATGAGGACTTTACTATAAAATTGAATGCTTGATATGTCAAAATTATTATATTGATGTATCTATATGTTGCCTACTTATCATGGAGCATAGAGAAGATGTTTTTATCATATTGCCTAATACTACTGAGTGACTAACTTTATCAGCTCAATTCTTGTGAACTAAAAGTTTGTCATATGGCTGTACACATTCAGGAAATGTTCATAGGGGGAACAGACACATCATCGACAGTTTTAGAGTGGGCTATTTCTGAAATGATGAAGAATCCACAAGTGATGGAAAAAGCACAAGCTGAGGTGAGAGAGGTTTTCAAAGGGAAAAGTAAAATTACAGAATCGGAAATTCAAAAGTTAGATTATATAAAAATGGTTATCAAAGAGACACTACGAATGCATCCACCATTACCGTTGTTACTACCAAGAGAAGCTATAGAAAAATGTGAAATTGGTGGCTATGACATACCTGCAAAAACCAAAGTCATCATCAATGCATGGGCAATAGGTAGACATCCACAACACTGGGAAAATGCTGAATGCTTTGAACCAGAAAGATTCCAAGATTTAGACTTGGATTTCGTAGGGACTAATCTTGAGTACATACCATTTGGAGGTGGCAGAAGGATGTGTCCAGGGTCATTATTTGGAATTGCAAATGTTGAACTTCCACTTGCCAAATTACTATTTCATTTCGACTGGGAACTCCCTGATGGAATTGAAGCAAGTGACCTTGACATGACAGAGACTTTTGGTGCAACCGTTGGAAGGAAGAATGATTTGTACTTGGTTGCAAAACCTCATATTTCCAAATCCTAATGCACATGAAATAAG</genome_strand>
        <mrna_strand>GTTTTACTTAGGGTTCAAGAAAGTGGTGATTTAGAAATCCCCATATCAAGAAACACTCTCAAATCTGTCATTTTG..................................................................................................................................................................................................................................................................................................................................................GAAATCTTCATAGGGGGAACAGACACATCATCCACAGTTTTAGAGTGGGCTATTTCAGAAATGATGAAGAATCCACAAGTGATGGAAAAAGCACAAGCTGAGGTGAGACGGGTTTTCAAAGGGAAAAGTAAAATTACAGAATCGGAAATTCAAAAGCTAGATTATATGAAATTGGTTATCAAAGAGACACTACGAATGCATCCACCAGCACCGTTGTTACTACCAAGAGAAGCTATAGAAAAATGTGATATTGGTGGCTATGAAATACCTGCCAAAACCAAAGTCATCATCAATGCATGGGCAATAGGTAGACATCCAGAGCACTGGAAAAATGCTGAATGCTTTGAACCAGAAAGATTCCAAGATTCAGACTTGGATTTCATTGGGACTAATCTTGAGTACATACCATTTGGAGGTGGCAGAAGGATATGTCCAGGGACATTATTTGGAATTGCGAATGTTGAACTTCCACTTGCCAAATTACTATTTCATTTCGACTGGAAACTCCCTGATGGAATTGAAGCAAGTAACCTTGACATGACAGAGACTTTTGGTGCAACAGTAGGGAGGAAGAAATGATTGTATTTGGTTGCAAAACCTTATATTTCC-AATCCCNAGACTGATGACTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E460196" ref_strand="+" ref_description="SGN-E460196 [cPRO-30-A10]">
      <seq>gttttacttagggttcaagaaagtggtgatttagaaatccccatatcaagaaacactctcaaatctgtcattttggaaatcttcatagggggaacagacacatcatccacagttttagagtgggctatttcagaaatgatgaagaatccacaagtgatggaaaaagcacaagctgaggtgagacgggttttcaaagggaaaagtaaaattacagaatcggaaattcaaaagctagattatatgaaattggttatcaaagagacactacgaatgcatccaccagcaccgttgttactaccaagagaagctatagaaaaatgtgatattggtggctatgaaatacctgccaaaaccaaagtcatcatcaatgcatgggcaataggtagacatccagagcactggaaaaatgctgaatgctttgaaccagaaagattccaagattcagacttggatttcattgggactaatcttgagtacataccatttggaggtggcagaaggatatgtccagggacattatttggaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="52017" stop="53482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52317" g_stop="52391" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52392" i_stop="52729" i_length="338">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52730" g_stop="53183" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="529" r_length="454" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E460196" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E460196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52317" e_stop="52391"/>
          <exon e_start="52730" e_stop="53183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTACTTAGGGTTCAAGAAAGTGGTGATTTAGAAATCCCCATATCAAGAAACACTCTCAAATCTGTCATTTTGGTATGTTCTTTCAACCTTATAAAATCCCCTTTTCTAAAACAAGCCGTGTTTTAGTTGTTTGCAAGTAACACTTTTTGGAACATCATATTATGTTTGTGTCAACTCAATCACACAGAAAAATATCTGCTAACTAGAAGGAAATTATACATGAGGACTTTACTATAAAATTGAATGCTTGATATGTCAAAATTATTATATTGATGTATCTATATGTTGCCTACTTATCATGGAGCATAGAGAAGATGTTTTTATCATATTGCCTAATACTACTGAGTGACTAACTTTATCAGCTCAATTCTTGTGAACTAAAAGTTTGTCATATGGCTGTACACATTCAGGAAATGTTCATAGGGGGAACAGACACATCATCGACAGTTTTAGAGTGGGCTATTTCTGAAATGATGAAGAATCCACAAGTGATGGAAAAAGCACAAGCTGAGGTGAGAGAGGTTTTCAAAGGGAAAAGTAAAATTACAGAATCGGAAATTCAAAAGTTAGATTATATAAAAATGGTTATCAAAGAGACACTACGAATGCATCCACCATTACCGTTGTTACTACCAAGAGAAGCTATAGAAAAATGTGAAATTGGTGGCTATGACATACCTGCAAAAACCAAAGTCATCATCAATGCATGGGCAATAGGTAGACATCCACAACACTGGGAAAATGCTGAATGCTTTGAACCAGAAAGATTCCAAGATTTAGACTTGGATTTCGTAGGGACTAATCTTGAGTACATACCATTTGGAGGTGGCAGAAGGATGTGTCCAGGGTCATTATTTGGAATTG</genome_strand>
        <mrna_strand>GTTTTACTTAGGGTTCAAGAAAGTGGTGATTTAGAAATCCCCATATCAAGAAACACTCTCAAATCTGTCATTTTG..................................................................................................................................................................................................................................................................................................................................................GAAATCTTCATAGGGGGAACAGACACATCATCCACAGTTTTAGAGTGGGCTATTTCAGAAATGATGAAGAATCCACAAGTGATGGAAAAAGCACAAGCTGAGGTGAGACGGGTTTTCAAAGGGAAAAGTAAAATTACAGAATCGGAAATTCAAAAGCTAGATTATATGAAATTGGTTATCAAAGAGACACTACGAATGCATCCACCAGCACCGTTGTTACTACCAAGAGAAGCTATAGAAAAATGTGATATTGGTGGCTATGAAATACCTGCCAAAACCAAAGTCATCATCAATGCATGGGCAATAGGTAGACATCCAGAGCACTGGAAAAATGCTGAATGCTTTGAACCAGAAAGATTCCAAGATTCAGACTTGGATTTCATTGGGACTAATCTTGAGTACATACCATTTGGAGGTGGCAGAAGGATATGTCCAGGGACATTATTTGGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E460342" ref_strand="+" ref_description="SGN-E460342 [cPRO-30-B12]">
      <seq>gttttacttagggttcaagaaagtggtgatttaaaaatccccatatcatgaaacactctcaaatctgtcattttggaaatcttcatagggggaacagacacatcatccacagttttagagtgggctatttcagaaatgatgaagaatccacaagtgatggaaaaagcacaagctgaggtgagacgggttttcaaagggaaaagtaaaattacagaatcggaaattcaaaagctagattatatgaaattggttatcaaagagacactacgaatgcatccaccagcaccgttgttactaccaagagaagctatagaaaaatgtgatattggtggctatgaaatacctgccaaaaccaaagtcatcatcaatgcatgggcaataggtagacatccagagcactggaataatgctgaatgctttgaaccagaaagattccaagattcagacttggatctcattgggactaatcttgagtactaccatttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="52017" stop="53443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52317" g_stop="52391" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52392" i_stop="52729" i_length="338">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52730" g_stop="53143" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="488" r_length="413" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E460342" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E460342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52317" e_stop="52391"/>
          <exon e_start="52730" e_stop="53143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTACTTAGGGTTCAAGAAAGTGGTGATTTAGAAATCCCCATATCAAGAAACACTCTCAAATCTGTCATTTTGGTATGTTCTTTCAACCTTATAAAATCCCCTTTTCTAAAACAAGCCGTGTTTTAGTTGTTTGCAAGTAACACTTTTTGGAACATCATATTATGTTTGTGTCAACTCAATCACACAGAAAAATATCTGCTAACTAGAAGGAAATTATACATGAGGACTTTACTATAAAATTGAATGCTTGATATGTCAAAATTATTATATTGATGTATCTATATGTTGCCTACTTATCATGGAGCATAGAGAAGATGTTTTTATCATATTGCCTAATACTACTGAGTGACTAACTTTATCAGCTCAATTCTTGTGAACTAAAAGTTTGTCATATGGCTGTACACATTCAGGAAATGTTCATAGGGGGAACAGACACATCATCGACAGTTTTAGAGTGGGCTATTTCTGAAATGATGAAGAATCCACAAGTGATGGAAAAAGCACAAGCTGAGGTGAGAGAGGTTTTCAAAGGGAAAAGTAAAATTACAGAATCGGAAATTCAAAAGTTAGATTATATAAAAATGGTTATCAAAGAGACACTACGAATGCATCCACCATTACCGTTGTTACTACCAAGAGAAGCTATAGAAAAATGTGAAATTGGTGGCTATGACATACCTGCAAAAACCAAAGTCATCATCAATGCATGGGCAATAGGTAGACATCCACAACACTGGGAAAATGCTGAATGCTTTGAACCAGAAAGATTCCAAGATTTAGACTTGGATTTCGTAGGGACTAATCTTGAGTACATACCATTTGGA</genome_strand>
        <mrna_strand>GTTTTACTTAGGGTTCAAGAAAGTGGTGATTTAAAAATCCCCATATCATGAAACACTCTCAAATCTGTCATTTTG..................................................................................................................................................................................................................................................................................................................................................GAAATCTTCATAGGGGGAACAGACACATCATCCACAGTTTTAGAGTGGGCTATTTCAGAAATGATGAAGAATCCACAAGTGATGGAAAAAGCACAAGCTGAGGTGAGACGGGTTTTCAAAGGGAAAAGTAAAATTACAGAATCGGAAATTCAAAAGCTAGATTATATGAAATTGGTTATCAAAGAGACACTACGAATGCATCCACCAGCACCGTTGTTACTACCAAGAGAAGCTATAGAAAAATGTGATATTGGTGGCTATGAAATACCTGCCAAAACCAAAGTCATCATCAATGCATGGGCAATAGGTAGACATCCAGAGCACTGGAATAATGCTGAATGCTTTGAACCAGAAAGATTCCAAGATTCAGACTTGGATCTCATTGGGACTAATCTTGAGTAC-TACCATTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203778" ref_strand="+" ref_description="SGN-E203778 [cLEC-17-F19]">
      <seq>cattttggtatgttctttcaaccttataaaatccccttttctaaaacaagccgtgttttagttgtttgcaagtaacactttttggaacatcatattatgtttgtgtcaactcaatcacacagaaaaatatctgctaactagaaggaaattatacatgaggactttactataaaattgaatgcttgatatgtcaaaattattatattgatgtatctatatgttgcctacttatcatggagcatagagaagatgtttttatcatattgcctaatactactgagtgactaactttatcagctcaattcttgtgaactaaaagtttgtcatatggctgtacacattcaggaaatgttcatagggggaacagacacatcatcgacagttttagagtgggctatttctgaaatgatgaagaatccacaagtgatggaaaaagcacaagctgaggtgagagaggttttcaaagggaaaagtaaaattacagaatcggaaattcaaaagttagattatataaaaatggttatcaaagagacactacgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="52085" stop="53227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52385" g_stop="52927" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E203778" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52385" e_stop="52927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTGGTATGTTCTTTCAACCTTATAAAATCCCCTTTTCTAAAACAAGCCGTGTTTTAGTTGTTTGCAAGTAACACTTTTTGGAACATCATATTATGTTTGTGTCAACTCAATCACACAGAAAAATATCTGCTAACTAGAAGGAAATTATACATGAGGACTTTACTATAAAATTGAATGCTTGATATGTCAAAATTATTATATTGATGTATCTATATGTTGCCTACTTATCATGGAGCATAGAGAAGATGTTTTTATCATATTGCCTAATACTACTGAGTGACTAACTTTATCAGCTCAATTCTTGTGAACTAAAAGTTTGTCATATGGCTGTACACATTCAGGAAATGTTCATAGGGGGAACAGACACATCATCGACAGTTTTAGAGTGGGCTATTTCTGAAATGATGAAGAATCCACAAGTGATGGAAAAAGCACAAGCTGAGGTGAGAGAGGTTTTCAAAGGGAAAAGTAAAATTACAGAATCGGAAATTCAAAAGTTAGATTATATAAAAATGGTTATCAAAGAGACACTACGAATG</genome_strand>
        <mrna_strand>CATTTTGGTATGTTCTTTCAACCTTATAAAATCCCCTTTTCTAAAACAAGCCGTGTTTTAGTTGTTTGCAAGTAACACTTTTTGGAACATCATATTATGTTTGTGTCAACTCAATCACACAGAAAAATATCTGCTAACTAGAAGGAAATTATACATGAGGACTTTACTATAAAATTGAATGCTTGATATGTCAAAATTATTATATTGATGTATCTATATGTTGCCTACTTATCATGGAGCATAGAGAAGATGTTTTTATCATATTGCCTAATACTACTGAGTGACTAACTTTATCAGCTCAATTCTTGTGAACTAAAAGTTTGTCATATGGCTGTACACATTCAGGAAATGTTCATAGGGGGAACAGACACATCATCGACAGTTTTAGAGTGGGCTATTTCTGAAATGATGAAGAATCCACAAGTGATGGAAAAAGCACAAGCTGAGGTGAGAGAGGTTTTCAAAGGGAAAAGTAAAATTACAGAATCGGAAATTCAAAAGTTAGATTATATAAAAATGGTTATCAAAGAGACACTACGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357622" ref_strand="+" ref_description="SGN-E357622 [cTOS-24-G9]">
      <seq>aaaaatgtgaaattggtggctatgacatacctgcaaaaaccaaagtcatcatcaatgcatgggcaataggtagacatccacaacactgggaaaatgctgaatgctttgaaccagaaagattccaagatttagacttggatttcgtagggactaatcttgagtacataccatttggaggtggcagaaggatgtgtccagggtcattatttggaattgcaaatgttgaacttccacttgccaaattactatttcatttcgactgggaactccctgatggaattgaagcaagtgaccttgacatgacagagacttttggtgcaaccgttggaaggaagaatgatttgtacttggttgcaaaacctcatatttccaaatcctaatgcacatgaaataagggttcttctattcttttttctctggtattcactttagcaaaatgaaagcagcccacccaagtgtccacatttcttaatatgcccaaacagaagaaaaatctcttgtctagtctctgcctactgtatgtgctaaatcaaactataataagttgtctacaggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="52668" stop="53829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52968" g_stop="53533" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E357622" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52968" e_stop="53533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGTGAAATTGGTGGCTATGACATACCTGCAAAAACCAAAGTCATCATCAATGCATGGGCAATAGGTAGACATCCACAACACTGGGAAAATGCTGAATGCTTTGAACCAGAAAGATTCCAAGATTTAGACTTGGATTTCGTAGGGACTAATCTTGAGTACATACCATTTGGAGGTGGCAGAAGGATGTGTCCAGGGTCATTATTTGGAATTGCAAATGTTGAACTTCCACTTGCCAAATTACTATTTCATTTCGACTGGGAACTCCCTGATGGAATTGAAGCAAGTGACCTTGACATGACAGAGACTTTTGGTGCAACCGTTGGAAGGAAGAATGATTTGTACTTGGTTGCAAAACCTCATATTTCCAAATCCTAATGCACATGAAATAAGGTTTCTTCTATTCTTTTTTCTCTGTTATTCACTTTAGCAAAATGAAAGCAGCCCACCCAAGTGTCCACATTTCTTAATATGCCCAAACAGAAGAAAAATCTCTTGTCTAGTCTCTGCCTACTGTATGTGCTAAATCAAACTATAATAAGTTGTCTACAGGAAAAATATTGT</genome_strand>
        <mrna_strand>AAAAATGTGAAATTGGTGGCTATGACATACCTGCAAAAACCAAAGTCATCATCAATGCATGGGCAATAGGTAGACATCCACAACACTGGGAAAATGCTGAATGCTTTGAACCAGAAAGATTCCAAGATTTAGACTTGGATTTCGTAGGGACTAATCTTGAGTACATACCATTTGGAGGTGGCAGAAGGATGTGTCCAGGGTCATTATTTGGAATTGCAAATGTTGAACTTCCACTTGCCAAATTACTATTTCATTTCGACTGGGAACTCCCTGATGGAATTGAAGCAAGTGACCTTGACATGACAGAGACTTTTGGTGCAACCGTTGGAAGGAAGAATGATTTGTACTTGGTTGCAAAACCTCATATTTCCAAATCCTAATGCACATGAAATAAGGGTTCTTCTATTCTTTTTTCTCTGGTATTCACTTTAGCAAAATGAAAGCAGCCCACCCAAGTGTCCACATTTCTTAATATGCCCAAACAGAAGAAAAATCTCTTGTCTAGTCTCTGCCTACTGTATGTGCTAAATCAAACTATAATAAGTTGTCTACAGGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E614135" ref_strand="+" ref_description="SGN-E614135 [63918]">
      <seq>taatactgccaaaaccaaagtcatcatcaatgcatgggcaataggtagacatccagagcactggaaaaatgctgaatgctttgaaccagaaagattccaagattcagacttggatttcattgggactaatcttgagtacataccatttggaggtggcagaaggatatgtccagggacattatttggaattgcgaatgttgaacttccacttgccaaattactatttcatttcgactggaaactccctgatggaattgaagcaagtaaccttgacatgacagagacttttggtgcaacagtagggaggaagaatgatttgtatttggttgcaaaaccttatatttccaaatcccaagactgatgacttatgcacatgaaataaggtttcttctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="52694" stop="53672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52992" g_stop="53362" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="393" polyA_stop="404"/>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E614135" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E614135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52992" e_stop="53362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATACCTGCAAAAACCAAAGTCATCATCAATGCATGGGCAATAGGTAGACATCCACAACACTGGGAAAATGCTGAATGCTTTGAACCAGAAAGATTCCAAGATTTAGACTTGGATTTCGTAGGGACTAATCTTGAGTACATACCATTTGGAGGTGGCAGAAGGATGTGTCCAGGGTCATTATTTGGAATTGCAAATGTTGAACTTCCACTTGCCAAATTACTATTTCATTTCGACTGGGAACTCCCTGATGGAATTGAAGCAAGTGACCTTGACATGACAGAGACTTTTGGTGCAACCGTTGGAAGGAAGAATGATTTGTACTTGGTTGCAAAACCTCATATTTCCAAATCCTAATGCACATGAAATAAG</genome_strand>
        <mrna_strand>TAATA-CTGCCAAAACCAAAGTCATCATCAATGCATGGGCAATAGGTAGACATCCAGAGCACTGGAAAAATGCTGAATGCTTTGAACCAGAAAGATTCCAAGATTCAGACTTGGATTTCATTGGGACTAATCTTGAGTACATACCATTTGGAGGTGGCAGAAGGATATGTCCAGGGACATTATTTGGAATTGCGAATGTTGAACTTCCACTTGCCAAATTACTATTTCATTTCGACTGGAAACTCCCTGATGGAATTGAAGCAAGTAACCTTGACATGACAGAGACTTTTGGTGCAACAGTAGGGAGGAAGAATGATTTGTATTTGGTTGCAAAACCTTATATTTCCAAATCCCAAGACTGATGACTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E216436" ref_strand="+" ref_description="SGN-E216436 [cLEL-1-E24](-)">
      <seq>gcccaaaatggtgaatggaatcccagctaagatggaacatgaaacttatcaaaatggaagcagtagcagcagtgggcaaagaagtgtgggaaggcatcatggtggtgtggggcaatggaaaccagccttacagagtattgcagagattggaacttgaactatacccaccattaagcattacactttccctaccatggctaaaccttttccaaaataagaaaggatagcaactcaattgtccctagctaatagtaattagtttagaaaagtaccacttaattactacaatgtttgacgaattccctctgaagaatgcctctacttagtagctgcttattttcaagttccacgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="57484" stop="4675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57184" g_stop="57154" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57153" i_stop="55251" i_length="1903">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55250" g_stop="54913" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="369" r_length="338" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E216436" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57184" e_stop="57154"/>
          <exon e_start="55250" e_stop="54913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCAAAATGGTGAATGGAATCCCAGCTAAGGTAATTAATTTTTACAAATTCCTTTTAGGACCATTTTTTATTTAGATGTCTTTTAAATTCTCGGGTCTAATTTAAGTCATTTTCACCCTTTTAAATATACCCAACGGCCAACTGAATACAAACTTAAATTACTGTTTGGATTTTCTTTTTCCTCTTCCTTTGCATTCATTTTAAATGGTACTACTACTATAATATTCTGTTTTTCAAATTTTTGGAGTAAAAAATTGGCTTGCAATTTAGGATTCTTTTGTATTTGATCTATTTAGACTTGATGATGCATTGTAATATTTCGATCACTTATAAAGCATCTTCCCCTTCCGTAAAGTTGAGGGCATAACAAAAAAAAGCTTATAACTTAGATAACTTCCTCCGTCTCATATTATTGTTCACTTTATTATAAATAGTTTTTTTAAATTACTTAGATAAATTACTTTAAACTTTCCAATTTCACCCGTGTAATTAATATTTCTTTCGAAGCCTAAACACAAGCTTATACGTTGTAAAATATCATTTTTTTTTCAAGACTAGATAAGATATATCTATTTTATGATTTCTTAATGAACGTGAAACAAACAAGTTTACGGTGAAGGGAGTAATAAATAAACAGAGGCGTCTTTTATACCTCGGATAGTGATATTGGGCCTGCTATTAAGTGTGTCTATTTTACATATGATGGCAAGTGAGATTATAATTGCACCTATGAGGCCATGATTATCTGAAGATTTGATAGGAATATATGACATATTTGGTTGTTAGTATTATTTGTCTAATTACATTATTTTACATATCTTTATATATAAACAGGGGAATAATTTGTTAGGTAACCATCCTATAAATGGTTCCTTACTTTATTTCCCGCTAGTCAATTATTTATACTATCACATTGAGGTTGTTATTGGTGCGCTTTTAAGAAATATGTATTGATCTATCAATTAGGGTGGATGAACCTAAGCCATTTCTTCTGTGCCATTATTAAGCTAGCTCGAAGTTTAGAAAATAAAAAGAGACTTTGAATCTTGTTATGTTAAATTTGTGACGTATATATTAGTGGGACAACATTAGGGTCGGCAAAGATCAAAAGGATACGGAGAAAGGCTGGCTAGAATTATGTTTCTTTTTTTTCATTTATTTACTTTGCTTGGTTTTGTAAAACGAATAATGGAAACCATGTGCTTTTCCTTGGTTAATTATGGAAAGGTATAGTGGAATCTCTATAAGAAGCCATTAAAATGTGTAATGAGACTCTCTCTCTTGATCATTATAGCATATGTTTTTAATTCCACTTCCCAATTATGCGGGCTTTATCTCTGTCGATCATAAAGGGAATCACATGGGTATTTCCTATTCATTTAGGGAGTTGAAACAGAAATTAAAGAATTAAACAAGAGTTTACCAGAATATATATCAAGTGGTTGTTAAAAGAGTATATAATAATTGTTAATGCTGATTCATTGTTAGTACAGTATAAGATTTTTTAAATTAGCGAAGAGACACTAAATCTGATTTTTCTCCATCTCCAAGCGTTTCAGTTCCAGAGTCTTAATCAGAAACTGTCGTTAGTGGCGTGACTTCTGGTTTAACGAAAGGATTAATTACTTAAACAGATAATGAATATTAATATTTTCAAATCGTTTGACTTTACAAGGTTACGGAATATTGTGATGAAATTTGTGTGATTAGATCATTTGTTTGATAAAGTAAAAGTAGTAATGGTAAATGGTGCGTCTGACAAAGTCGTGACGAGAGATATTCTGTTCAAAGCATAATGACTAATTGGTCATTGGTAAATAGCGGGTCTGAGAGAAAAAAAAAACACAGAGTCTCATCCAAATAGAAATGCTTTATTAGTATTGGTGTTTGTGCAGCTCAAAATTCATGCATCTTTTGTGCACTTTTTGTTCAGATGGAACATGAAACTTATCAAAATGGAAGCAGTAGCAGCAGTGGGCAAAGAAGTGTGGGAAGGCATCATGGTGGTGTGGGGCAATGGAAACCAGCCTTACAGAGTATTGCAGAGATTGGAACTTGAACTATACCCACCATTAAGCATTACACTTTCCCTACCATGGCTAAACCTTTTCCAAAATAAGAAAGGATAGCAACTCAATTGTCCCTAGCTAATAGTAATTAGTTTAGAAAAGTACCACTTAATTACTACAATGTTTGACGAATTCCCTCTGAAGAATGCATCTACTTAGTAGCTGCTTATTTTCAAGTTCCACGTAATTAAAATATTACCTG</genome_strand>
        <mrna_strand>GCCCAAAATGGTGAATGGAATCCCAGCTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAACATGAAACTTATCAAAATGGAAGCAGTAGCAGCAGTGGGCAAAGAAGTGTGGGAAGGCATCATGGTGGTGTGGGGCAATGGAAACCAGCCTTACAGAGTATTGCAGAGATTGGAACTTGAACTATACCCACCATTAAGCATTACACTTTCCCTACCATGGCTAAACCTTTTCCAAAATAAGAAAGGATAGCAACTCAATTGTCCCTAGCTAATAGTAATTAGTTTAGAAAAGTACCACTTAATTACTACAATGTTTGACGAATTCCCTCTGAAGAATGCCTCTACTTAGTAGCTGCTTATTTTCAAGTTCCACGTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338975" ref_strand="+" ref_description="SGN-E338975 [cTOF-6-I19]">
      <seq>agagttctctctgttttcattcctttattattacttgacaagtcagttttggagtaatcaatcatcttcttctattcatctttaacttaacgcagaaaattaaaattaaaatttgtgcattttgatatagtttgcgctctgcattattaatcgatcgaccggccggtgtttgagtttaagatggggaattgccaagcggcagaggcagcaactgtagtgattcaacatccaggcaataaaattgagaggatttactggtctataagtgcacatgaagtcatgagttcgaatcctggccactacgtcgcccttgttatcacttctccaacggggagaacacacaacggttcgcccgtcaggcagcttaagcttctccgccccggagatcctttgcttcttggacaagtttatcgactcatctgcttcgaagatgtactaaaagagtttgctgcaaagaagtgcgtgaaacttggcaagttgctcagggaaagtggaggccttgttctcgattcaaagaaaatctccgtcgattcttcagcagtgaaaaacaagcccaaaatggtgaatggaatcccagctaagatggaacatgaaacttatcaaaatggaagcagtagcagcagtgggcaaagaaagtgtgggaagggcatcatggtggtgtggggcaatggaaaccagccttacagagtattgcagagattgggacttgaactatacccaccattaagcatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="58110" stop="54802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57810" g_stop="57381" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57380" i_stop="57306" i_length="75">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57305" g_stop="57154" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="582" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57153" i_stop="55251" i_length="1903">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55250" g_stop="55102" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="733" r_length="151" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E338975" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57810" e_stop="57381"/>
          <exon e_start="57305" e_stop="57154"/>
          <exon e_start="55250" e_stop="55102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTCTCTCTGTTTTCATTCCTTTATTATTACTTGACAAGTCAGTTTTGGAGTAATCAATCATCTTCTTCTATTCATCTTTAACTTAACGCAGAAAATTAAAATTAAAATTTGTGCATTTTGATATAGTTTGCGCTCTGCATTATTAATCGATCGACCGGCCGGTGTTTGAGTTTAAGATGGGGAATTGCCAAGCGGCAGAGGCAGCAACTGTAGTGATTCAACATCCAGGCAATAAAATTGAGAGGATTTACTGGTCTATAAGTGCACATGAAGTCATGAGTTCGAATCCTGGCCACTACGTCGCCCTTGTTATCACTTCTCCAACGGGGAGAACACACAACGGTTCGCCCGTCAGGCAGCTTAAGCTTCTCCGCCCCGGAGATACTTTGCTTCTTGGACAAGTTTATCGACTCATCTGCTTCGAAGGTAAAAATAAAATATCTCAATTTGTTTTTTCTTCAATAATTTCTTATAATCTGATCGATCATTTTTTTTTTCCAGATGTACTAAAAGAGTTTGCTGCAAAGAAGTGCGTGAAACTTGGCAAGTTGCTCAGGGAAAGTGGAGGCCTTGTTCTCGATTCAAAGAAAATCTCCGTCGATTCTTCAGCAGTGAAAAACAAGCCCAAAATGGTGAATGGAATCCCAGCTAAGGTAATTAATTTTTACAAATTCCTTTTAGGACCATTTTTTATTTAGATGTCTTTTAAATTCTCGGGTCTAATTTAAGTCATTTTCACCCTTTTAAATATACCCAACGGCCAACTGAATACAAACTTAAATTACTGTTTGGATTTTCTTTTTCCTCTTCCTTTGCATTCATTTTAAATGGTACTACTACTATAATATTCTGTTTTTCAAATTTTTGGAGTAAAAAATTGGCTTGCAATTTAGGATTCTTTTGTATTTGATCTATTTAGACTTGATGATGCATTGTAATATTTCGATCACTTATAAAGCATCTTCCCCTTCCGTAAAGTTGAGGGCATAACAAAAAAAAGCTTATAACTTAGATAACTTCCTCCGTCTCATATTATTGTTCACTTTATTATAAATAGTTTTTTTAAATTACTTAGATAAATTACTTTAAACTTTCCAATTTCACCCGTGTAATTAATATTTCTTTCGAAGCCTAAACACAAGCTTATACGTTGTAAAATATCATTTTTTTTTCAAGACTAGATAAGATATATCTATTTTATGATTTCTTAATGAACGTGAAACAAACAAGTTTACGGTGAAGGGAGTAATAAATAAACAGAGGCGTCTTTTATACCTCGGATAGTGATATTGGGCCTGCTATTAAGTGTGTCTATTTTACATATGATGGCAAGTGAGATTATAATTGCACCTATGAGGCCATGATTATCTGAAGATTTGATAGGAATATATGACATATTTGGTTGTTAGTATTATTTGTCTAATTACATTATTTTACATATCTTTATATATAAACAGGGGAATAATTTGTTAGGTAACCATCCTATAAATGGTTCCTTACTTTATTTCCCGCTAGTCAATTATTTATACTATCACATTGAGGTTGTTATTGGTGCGCTTTTAAGAAATATGTATTGATCTATCAATTAGGGTGGATGAACCTAAGCCATTTCTTCTGTGCCATTATTAAGCTAGCTCGAAGTTTAGAAAATAAAAAGAGACTTTGAATCTTGTTATGTTAAATTTGTGACGTATATATTAGTGGGACAACATTAGGGTCGGCAAAGATCAAAAGGATACGGAGAAAGGCTGGCTAGAATTATGTTTCTTTTTTTTCATTTATTTACTTTGCTTGGTTTTGTAAAACGAATAATGGAAACCATGTGCTTTTCCTTGGTTAATTATGGAAAGGTATAGTGGAATCTCTATAAGAAGCCATTAAAATGTGTAATGAGACTCTCTCTCTTGATCATTATAGCATATGTTTTTAATTCCACTTCCCAATTATGCGGGCTTTATCTCTGTCGATCATAAAGGGAATCACATGGGTATTTCCTATTCATTTAGGGAGTTGAAACAGAAATTAAAGAATTAAACAAGAGTTTACCAGAATATATATCAAGTGGTTGTTAAAAGAGTATATAATAATTGTTAATGCTGATTCATTGTTAGTACAGTATAAGATTTTTTAAATTAGCGAAGAGACACTAAATCTGATTTTTCTCCATCTCCAAGCGTTTCAGTTCCAGAGTCTTAATCAGAAACTGTCGTTAGTGGCGTGACTTCTGGTTTAACGAAAGGATTAATTACTTAAACAGATAATGAATATTAATATTTTCAAATCGTTTGACTTTACAAGGTTACGGAATATTGTGATGAAATTTGTGTGATTAGATCATTTGTTTGATAAAGTAAAAGTAGTAATGGTAAATGGTGCGTCTGACAAAGTCGTGACGAGAGATATTCTGTTCAAAGCATAATGACTAATTGGTCATTGGTAAATAGCGGGTCTGAGAGAAAAAAAAAACACAGAGTCTCATCCAAATAGAAATGCTTTATTAGTATTGGTGTTTGTGCAGCTCAAAATTCATGCATCTTTTGTGCACTTTTTGTTCAGATGGAACATGAAACTTATCAAAATGGAAGCAGTAGCAGCAGTGGGCAAAG-AAGTGTGGGAA-GGCATCATGGTGGTGTGGGGCAATGGAAACCAGCCTTACAGAGTATTGCAGAGATTGGAACTTGAACTATACCCACCATTAAGCATTA</genome_strand>
        <mrna_strand>AGAGTTCTCTCTGTTTTCATTCCTTTATTATTACTTGACAAGTCAGTTTTGGAGTAATCAATCATCTTCTTCTATTCATCTTTAACTTAACGCAGAAAATTAAAATTAAAATTTGTGCATTTTGATATAGTTTGCGCTCTGCATTATTAATCGATCGACCGGCCGGTGTTTGAGTTTAAGATGGGGAATTGCCAAGCGGCAGAGGCAGCAACTGTAGTGATTCAACATCCAGGCAATAAAATTGAGAGGATTTACTGGTCTATAAGTGCACATGAAGTCATGAGTTCGAATCCTGGCCACTACGTCGCCCTTGTTATCACTTCTCCAACGGGGAGAACACACAACGGTTCGCCCGTCAGGCAGCTTAAGCTTCTCCGCCCCGGAGATCCTTTGCTTCTTGGACAAGTTTATCGACTCATCTGCTTCGAAG...........................................................................ATGTACTAAAAGAGTTTGCTGCAAAGAAGTGCGTGAAACTTGGCAAGTTGCTCAGGGAAAGTGGAGGCCTTGTTCTCGATTCAAAGAAAATCTCCGTCGATTCTTCAGCAGTGAAAAACAAGCCCAAAATGGTGAATGGAATCCCAGCTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAACATGAAACTTATCAAAATGGAAGCAGTAGCAGCAGTGGGCAAAGAAAGTGTGGGAAGGGCATCATGGTGGTGTGGGGCAATGGAAACCAGCCTTACAGAGTATTGCAGAGATTGGGACTTGAACTATACCCACCATTAAGCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E622206" ref_strand="+" ref_description="SGN-E622206 [72570]">
      <seq>tttaccaccaaatttacttcattttctgccacgcttccttacatcattattctcccctgttactactacttcttcagctcatataaactccaaaaaaaattacacaactgaaaaccgtgcgtacgtagtttttcttcccatattggagattgaatttctctgtggaatcttctgcatcttttgcactctgcattatcaatcgattgaccggccggtgtttgagtttaagatggggaattgccaagcggcagaggcagcaacagtagtgattcaacatccaggcaataaaattgagaggatttattggtctataagtgcacatgaagtcatgagttcgaatcctggccactacgtcgcccttgttatcacttctccaactgagagaacacacagtggttcgcccgtcaggcagcttaagcttctccgccccggcgatactttacttcttggacaagtttatcgactcatcagcttcgaagatgtactaaaagagtttgctgcaaagaagtgtgtgaaacttggcaagttactcagggaaagtggaggccttgttctcgattcaaagaaaatctccgtcgattcttcagcagtgaaaaacaagcccaaaatggtgaatggagtcccagctaagatggaacatgaaacttatcaacatggaagcagtagcagtagcagcagtgggcaaagaagtatgggaagacatcctggtggtggggggcaatggaaaccagctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="58316" stop="54852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58016" g_stop="57829" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.819"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57828" i_stop="57681" i_length="148">
            <donor d_prob="0.590" d_score="0.84"/>
            <acceptor a_prob="0.731" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57680" g_stop="57381" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="479" r_length="300" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57380" i_stop="57306" i_length="75">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57305" g_stop="57154" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="631" r_length="152" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57153" i_stop="55251" i_length="1903">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.70"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55250" g_stop="55157" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="731" r_length="100" r_score="0.819"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E622206" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E622206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58016" e_stop="57829"/>
          <exon e_start="57680" e_stop="57381"/>
          <exon e_start="57305" e_stop="57154"/>
          <exon e_start="55250" e_stop="55157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACCACCAAATTTACTTCATTTTCTGCCACGCTTCCTTACATCATTATTTTCCCCCTGTTACTACTTCTTCTTCTTCCTTCTCTTTAGCTCATATAAACTCC-AAAAAATTTACACAACTGAAAACCGTGCGTA-GT---TTTTCTTCCTTTATTGGTGATTGAATTTTTTGTGTGGATTCTTCTGCATCGGTGAGTGTGTAGACTGTCAGAGTTCTCTCTGTTTTCATTCCTTTATTATTACTTGACAAGTCAGTTTTGGAGTAATCAATCATCTTCTTCTATTCATCTTTAACTTAACGCAGAAAATTAAAATTAAAATTTGTGCATTTTGATATAGTTTGCGCTCTGCATTATTAATCGATCGACCGGCCGGTGTTTGAGTTTAAGATGGGGAATTGCCAAGCGGCAGAGGCAGCAACTGTAGTGATTCAACATCCAGGCAATAAAATTGAGAGGATTTACTGGTCTATAAGTGCACATGAAGTCATGAGTTCGAATCCTGGCCACTACGTCGCCCTTGTTATCACTTCTCCAACGGGGAGAACACACAACGGTTCGCCCGTCAGGCAGCTTAAGCTTCTCCGCCCCGGAGATACTTTGCTTCTTGGACAAGTTTATCGACTCATCTGCTTCGAAGGTAAAAATAAAATATCTCAATTTGTTTTTTCTTCAATAATTTCTTATAATCTGATCGATCATTTTTTTTTTCCAGATGTACTAAAAGAGTTTGCTGCAAAGAAGTGCGTGAAACTTGGCAAGTTGCTCAGGGAAAGTGGAGGCCTTGTTCTCGATTCAAAGAAAATCTCCGTCGATTCTTCAGCAGTGAAAAACAAGCCCAAAATGGTGAATGGAATCCCAGCTAAGGTAATTAATTTTTACAAATTCCTTTTAGGACCATTTTTTATTTAGATGTCTTTTAAATTCTCGGGTCTAATTTAAGTCATTTTCACCCTTTTAAATATACCCAACGGCCAACTGAATACAAACTTAAATTACTGTTTGGATTTTCTTTTTCCTCTTCCTTTGCATTCATTTTAAATGGTACTACTACTATAATATTCTGTTTTTCAAATTTTTGGAGTAAAAAATTGGCTTGCAATTTAGGATTCTTTTGTATTTGATCTATTTAGACTTGATGATGCATTGTAATATTTCGATCACTTATAAAGCATCTTCCCCTTCCGTAAAGTTGAGGGCATAACAAAAAAAAGCTTATAACTTAGATAACTTCCTCCGTCTCATATTATTGTTCACTTTATTATAAATAGTTTTTTTAAATTACTTAGATAAATTACTTTAAACTTTCCAATTTCACCCGTGTAATTAATATTTCTTTCGAAGCCTAAACACAAGCTTATACGTTGTAAAATATCATTTTTTTTTCAAGACTAGATAAGATATATCTATTTTATGATTTCTTAATGAACGTGAAACAAACAAGTTTACGGTGAAGGGAGTAATAAATAAACAGAGGCGTCTTTTATACCTCGGATAGTGATATTGGGCCTGCTATTAAGTGTGTCTATTTTACATATGATGGCAAGTGAGATTATAATTGCACCTATGAGGCCATGATTATCTGAAGATTTGATAGGAATATATGACATATTTGGTTGTTAGTATTATTTGTCTAATTACATTATTTTACATATCTTTATATATAAACAGGGGAATAATTTGTTAGGTAACCATCCTATAAATGGTTCCTTACTTTATTTCCCGCTAGTCAATTATTTATACTATCACATTGAGGTTGTTATTGGTGCGCTTTTAAGAAATATGTATTGATCTATCAATTAGGGTGGATGAACCTAAGCCATTTCTTCTGTGCCATTATTAAGCTAGCTCGAAGTTTAGAAAATAAAAAGAGACTTTGAATCTTGTTATGTTAAATTTGTGACGTATATATTAGTGGGACAACATTAGGGTCGGCAAAGATCAAAAGGATACGGAGAAAGGCTGGCTAGAATTATGTTTCTTTTTTTTCATTTATTTACTTTGCTTGGTTTTGTAAAACGAATAATGGAAACCATGTGCTTTTCCTTGGTTAATTATGGAAAGGTATAGTGGAATCTCTATAAGAAGCCATTAAAATGTGTAATGAGACTCTCTCTCTTGATCATTATAGCATATGTTTTTAATTCCACTTCCCAATTATGCGGGCTTTATCTCTGTCGATCATAAAGGGAATCACATGGGTATTTCCTATTCATTTAGGGAGTTGAAACAGAAATTAAAGAATTAAACAAGAGTTTACCAGAATATATATCAAGTGGTTGTTAAAAGAGTATATAATAATTGTTAATGCTGATTCATTGTTAGTACAGTATAAGATTTTTTAAATTAGCGAAGAGACACTAAATCTGATTTTTCTCCATCTCCAAGCGTTTCAGTTCCAGAGTCTTAATCAGAAACTGTCGTTAGTGGCGTGACTTCTGGTTTAACGAAAGGATTAATTACTTAAACAGATAATGAATATTAATATTTTCAAATCGTTTGACTTTACAAGGTTACGGAATATTGTGATGAAATTTGTGTGATTAGATCATTTGTTTGATAAAGTAAAAGTAGTAATGGTAAATGGTGCGTCTGACAAAGTCGTGACGAGAGATATTCTGTTCAAAGCATAATGACTAATTGGTCATTGGTAAATAGCGGGTCTGAGAGAAAAAAAAAACACAGAGTCTCATCCAAATAGAAATGCTTTATTAGTATTGGTGTTTGTGCAGCTCAAAATTCATGCATCTTTTGTGCACTTTTTGTTCAGATGGAACATGAAACTTATCAAAAT-G--G-A--AGCAGTAGCAGCAGTGGGCAAAGAAGTGTGGGAAGGCATCATGGTGGTGTGGGGCAATGGAAACCAG</genome_strand>
        <mrna_strand>TTTACCACCAAATTTACTTCATTTTCTGCCACGCTTCCTTACATCATTATTCT-CCCCTGTTACTA------CTACTT-C-T-TC---AGCTCATATAAACTCCAAAAAAAATTACACAACTGAAAACCGTGCGTACGTAGTTTTTCTTCCCATATTGGAGATTGAA-TTTCTCTGTGGAATCTTCTGCATCT....................................................................................................................................................TTTGCACTCTGCATTATCAATCGATTGACCGGCCGGTGTTTGAGTTTAAGATGGGGAATTGCCAAGCGGCAGAGGCAGCAACAGTAGTGATTCAACATCCAGGCAATAAAATTGAGAGGATTTATTGGTCTATAAGTGCACATGAAGTCATGAGTTCGAATCCTGGCCACTACGTCGCCCTTGTTATCACTTCTCCAACTGAGAGAACACACAGTGGTTCGCCCGTCAGGCAGCTTAAGCTTCTCCGCCCCGGCGATACTTTACTTCTTGGACAAGTTTATCGACTCATCAGCTTCGAAG...........................................................................ATGTACTAAAAGAGTTTGCTGCAAAGAAGTGTGTGAAACTTGGCAAGTTACTCAGGGAAAGTGGAGGCCTTGTTCTCGATTCAAAGAAAATCTCCGTCGATTCTTCAGCAGTGAAAAACAAGCCCAAAATGGTGAATGGAGTCCCAGCTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAACATGAAACTTATCAACATGGAAGCAGTAGCAGTAGCAGCAGTGGGCAAAGAAGTATGGGAAGACATCCTGGTGGTGGGGGGCAATGGAAACCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E720627" ref_strand="+" ref_description="SGN-E720627 [FC11BD09]">
      <seq>ctccctttagtttcatttaccaccaaatttacttcattttctgccacgcttccttacatcattattttccccctgttactacttcttcttcttccttctctttagctcatataaactccaaaaaatttacacaactgaaaaccgtgcgtagtttttcttcctttattggtgattgaattttttgtgtggattcttctgcatcgtttgcgctctgcattattaatcgatcgaccggccggtgtttgagtttaagatggggaattgccaagcggcagaggcagcaactgtagtgattcaacatccaggcaataaaattgagaggatttactggtctataagtgcacatgaagtcatgagttcgaatcctggccactacgtcgcccttgttatcacttctccaacggggagaacacacaacggttcgcccgtcaggcagcttaagcttctccgccccggagatactttgcttcttggacaagtttatcgactcatctgcttcgaagatgtactaaaagagtttgctgcaaagaagtgcgtgaaacttggcaagttgctcagggaaagtggaggccttgttctcgattcaaagaaaatctccgtccattcttcagcagtgaaaaacaagcccaaaatggtgaatggaatcccagctaagatggaacatgaaacttatcaaaatggaagcagtagcagcagtgggcaaagaagtgtgggaaggcatcatggtggtgtggggcaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="58331" stop="54864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58031" g_stop="57829" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57828" i_stop="57681" i_length="148">
            <donor d_prob="0.590" d_score="1.00"/>
            <acceptor a_prob="0.731" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57680" g_stop="57381" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="503" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57380" i_stop="57306" i_length="75">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57305" g_stop="57154" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="655" r_length="152" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57153" i_stop="55251" i_length="1903">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55250" g_stop="55164" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="742" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E720627" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58031" e_stop="57829"/>
          <exon e_start="57680" e_stop="57381"/>
          <exon e_start="57305" e_stop="57154"/>
          <exon e_start="55250" e_stop="55164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCTTTAGTTTCATTTACCACCAAATTTACTTCATTTTCTGCCACGCTTCCTTACATCATTATTTTCCCCCTGTTACTACTTCTTCTTCTTCCTTCTCTTTAGCTCATATAAACTCCAAAAAATTTACACAACTGAAAACCGTGCGTAGTTTTTCTTCCTTTATTGGTGATTGAATTTTTTGTGTGGATTCTTCTGCATCGGTGAGTGTGTAGACTGTCAGAGTTCTCTCTGTTTTCATTCCTTTATTATTACTTGACAAGTCAGTTTTGGAGTAATCAATCATCTTCTTCTATTCATCTTTAACTTAACGCAGAAAATTAAAATTAAAATTTGTGCATTTTGATATAGTTTGCGCTCTGCATTATTAATCGATCGACCGGCCGGTGTTTGAGTTTAAGATGGGGAATTGCCAAGCGGCAGAGGCAGCAACTGTAGTGATTCAACATCCAGGCAATAAAATTGAGAGGATTTACTGGTCTATAAGTGCACATGAAGTCATGAGTTCGAATCCTGGCCACTACGTCGCCCTTGTTATCACTTCTCCAACGGGGAGAACACACAACGGTTCGCCCGTCAGGCAGCTTAAGCTTCTCCGCCCCGGAGATACTTTGCTTCTTGGACAAGTTTATCGACTCATCTGCTTCGAAGGTAAAAATAAAATATCTCAATTTGTTTTTTCTTCAATAATTTCTTATAATCTGATCGATCATTTTTTTTTTCCAGATGTACTAAAAGAGTTTGCTGCAAAGAAGTGCGTGAAACTTGGCAAGTTGCTCAGGGAAAGTGGAGGCCTTGTTCTCGATTCAAAGAAAATCTCCGTCGATTCTTCAGCAGTGAAAAACAAGCCCAAAATGGTGAATGGAATCCCAGCTAAGGTAATTAATTTTTACAAATTCCTTTTAGGACCATTTTTTATTTAGATGTCTTTTAAATTCTCGGGTCTAATTTAAGTCATTTTCACCCTTTTAAATATACCCAACGGCCAACTGAATACAAACTTAAATTACTGTTTGGATTTTCTTTTTCCTCTTCCTTTGCATTCATTTTAAATGGTACTACTACTATAATATTCTGTTTTTCAAATTTTTGGAGTAAAAAATTGGCTTGCAATTTAGGATTCTTTTGTATTTGATCTATTTAGACTTGATGATGCATTGTAATATTTCGATCACTTATAAAGCATCTTCCCCTTCCGTAAAGTTGAGGGCATAACAAAAAAAAGCTTATAACTTAGATAACTTCCTCCGTCTCATATTATTGTTCACTTTATTATAAATAGTTTTTTTAAATTACTTAGATAAATTACTTTAAACTTTCCAATTTCACCCGTGTAATTAATATTTCTTTCGAAGCCTAAACACAAGCTTATACGTTGTAAAATATCATTTTTTTTTCAAGACTAGATAAGATATATCTATTTTATGATTTCTTAATGAACGTGAAACAAACAAGTTTACGGTGAAGGGAGTAATAAATAAACAGAGGCGTCTTTTATACCTCGGATAGTGATATTGGGCCTGCTATTAAGTGTGTCTATTTTACATATGATGGCAAGTGAGATTATAATTGCACCTATGAGGCCATGATTATCTGAAGATTTGATAGGAATATATGACATATTTGGTTGTTAGTATTATTTGTCTAATTACATTATTTTACATATCTTTATATATAAACAGGGGAATAATTTGTTAGGTAACCATCCTATAAATGGTTCCTTACTTTATTTCCCGCTAGTCAATTATTTATACTATCACATTGAGGTTGTTATTGGTGCGCTTTTAAGAAATATGTATTGATCTATCAATTAGGGTGGATGAACCTAAGCCATTTCTTCTGTGCCATTATTAAGCTAGCTCGAAGTTTAGAAAATAAAAAGAGACTTTGAATCTTGTTATGTTAAATTTGTGACGTATATATTAGTGGGACAACATTAGGGTCGGCAAAGATCAAAAGGATACGGAGAAAGGCTGGCTAGAATTATGTTTCTTTTTTTTCATTTATTTACTTTGCTTGGTTTTGTAAAACGAATAATGGAAACCATGTGCTTTTCCTTGGTTAATTATGGAAAGGTATAGTGGAATCTCTATAAGAAGCCATTAAAATGTGTAATGAGACTCTCTCTCTTGATCATTATAGCATATGTTTTTAATTCCACTTCCCAATTATGCGGGCTTTATCTCTGTCGATCATAAAGGGAATCACATGGGTATTTCCTATTCATTTAGGGAGTTGAAACAGAAATTAAAGAATTAAACAAGAGTTTACCAGAATATATATCAAGTGGTTGTTAAAAGAGTATATAATAATTGTTAATGCTGATTCATTGTTAGTACAGTATAAGATTTTTTAAATTAGCGAAGAGACACTAAATCTGATTTTTCTCCATCTCCAAGCGTTTCAGTTCCAGAGTCTTAATCAGAAACTGTCGTTAGTGGCGTGACTTCTGGTTTAACGAAAGGATTAATTACTTAAACAGATAATGAATATTAATATTTTCAAATCGTTTGACTTTACAAGGTTACGGAATATTGTGATGAAATTTGTGTGATTAGATCATTTGTTTGATAAAGTAAAAGTAGTAATGGTAAATGGTGCGTCTGACAAAGTCGTGACGAGAGATATTCTGTTCAAAGCATAATGACTAATTGGTCATTGGTAAATAGCGGGTCTGAGAGAAAAAAAAAACACAGAGTCTCATCCAAATAGAAATGCTTTATTAGTATTGGTGTTTGTGCAGCTCAAAATTCATGCATCTTTTGTGCACTTTTTGTTCAGATGGAACATGAAACTTATCAAAATGGAAGCAGTAGCAGCAGTGGGCAAAGAAGTGTGGGAAGGCATCATGGTGGTGTGGGGCAATGG</genome_strand>
        <mrna_strand>CTCCCTTTAGTTTCATTTACCACCAAATTTACTTCATTTTCTGCCACGCTTCCTTACATCATTATTTTCCCCCTGTTACTACTTCTTCTTCTTCCTTCTCTTTAGCTCATATAAACTCCAAAAAATTTACACAACTGAAAACCGTGCGTAGTTTTTCTTCCTTTATTGGTGATTGAATTTTTTGTGTGGATTCTTCTGCATCG....................................................................................................................................................TTTGCGCTCTGCATTATTAATCGATCGACCGGCCGGTGTTTGAGTTTAAGATGGGGAATTGCCAAGCGGCAGAGGCAGCAACTGTAGTGATTCAACATCCAGGCAATAAAATTGAGAGGATTTACTGGTCTATAAGTGCACATGAAGTCATGAGTTCGAATCCTGGCCACTACGTCGCCCTTGTTATCACTTCTCCAACGGGGAGAACACACAACGGTTCGCCCGTCAGGCAGCTTAAGCTTCTCCGCCCCGGAGATACTTTGCTTCTTGGACAAGTTTATCGACTCATCTGCTTCGAAG...........................................................................ATGTACTAAAAGAGTTTGCTGCAAAGAAGTGCGTGAAACTTGGCAAGTTGCTCAGGGAAAGTGGAGGCCTTGTTCTCGATTCAAAGAAAATCTCCGTCCATTCTTCAGCAGTGAAAAACAAGCCCAAAATGGTGAATGGAATCCCAGCTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAACATGAAACTTATCAAAATGGAAGCAGTAGCAGCAGTGGGCAAAGAAGTGTGGGAAGGCATCATGGTGGTGTGGGGCAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244638" ref_strand="+" ref_description="SGN-E244638 [cLED-38-P22]">
      <seq>tcgaccggccggtgtttgagtttaagatggggaattgccaagctgcagaggcagcaactgtagtgattcagcatccaggcaataaaattgagaggatttactggtctataagtgcgcatgaagtcatgagttcgaatcctggccactacgtcggccttgttatcacttctccaacggggagaacacacaacggttcgcccgtcaggcagcttaagcttctccgccccggagatactttgcttcttggacaagtttatcgactcatctgcttcgaagatgtactaaaagagtttgctgcaaagaagtgcgtgaaacttggcaagttgctcaaggaaagtggaagccttgttctcgattcaaagaaaatctccgtcgattcttcagcagtgaaaaacaagcccaaaatggtgaatggaatcccagctaagatggaacatgaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="57956" stop="54936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57656" g_stop="57381" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57380" i_stop="57306" i_length="75">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57305" g_stop="57154" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="428" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57153" i_stop="55251" i_length="1903">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55250" g_stop="55236" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="443" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E244638" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57656" e_stop="57381"/>
          <exon e_start="57305" e_stop="57154"/>
          <exon e_start="55250" e_stop="55236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACCGGCCGGTGTTTGAGTTTAAGATGGGGAATTGCCAAGCGGCAGAGGCAGCAACTGTAGTGATTCAACATCCAGGCAATAAAATTGAGAGGATTTACTGGTCTATAAGTGCACATGAAGTCATGAGTTCGAATCCTGGCCACTACGTCGCCCTTGTTATCACTTCTCCAACGGGGAGAACACACAACGGTTCGCCCGTCAGGCAGCTTAAGCTTCTCCGCCCCGGAGATACTTTGCTTCTTGGACAAGTTTATCGACTCATCTGCTTCGAAGGTAAAAATAAAATATCTCAATTTGTTTTTTCTTCAATAATTTCTTATAATCTGATCGATCATTTTTTTTTTCCAGATGTACTAAAAGAGTTTGCTGCAAAGAAGTGCGTGAAACTTGGCAAGTTGCTCAGGGAAAGTGGAGGCCTTGTTCTCGATTCAAAGAAAATCTCCGTCGATTCTTCAGCAGTGAAAAACAAGCCCAAAATGGTGAATGGAATCCCAGCTAAGGTAATTAATTTTTACAAATTCCTTTTAGGACCATTTTTTATTTAGATGTCTTTTAAATTCTCGGGTCTAATTTAAGTCATTTTCACCCTTTTAAATATACCCAACGGCCAACTGAATACAAACTTAAATTACTGTTTGGATTTTCTTTTTCCTCTTCCTTTGCATTCATTTTAAATGGTACTACTACTATAATATTCTGTTTTTCAAATTTTTGGAGTAAAAAATTGGCTTGCAATTTAGGATTCTTTTGTATTTGATCTATTTAGACTTGATGATGCATTGTAATATTTCGATCACTTATAAAGCATCTTCCCCTTCCGTAAAGTTGAGGGCATAACAAAAAAAAGCTTATAACTTAGATAACTTCCTCCGTCTCATATTATTGTTCACTTTATTATAAATAGTTTTTTTAAATTACTTAGATAAATTACTTTAAACTTTCCAATTTCACCCGTGTAATTAATATTTCTTTCGAAGCCTAAACACAAGCTTATACGTTGTAAAATATCATTTTTTTTTCAAGACTAGATAAGATATATCTATTTTATGATTTCTTAATGAACGTGAAACAAACAAGTTTACGGTGAAGGGAGTAATAAATAAACAGAGGCGTCTTTTATACCTCGGATAGTGATATTGGGCCTGCTATTAAGTGTGTCTATTTTACATATGATGGCAAGTGAGATTATAATTGCACCTATGAGGCCATGATTATCTGAAGATTTGATAGGAATATATGACATATTTGGTTGTTAGTATTATTTGTCTAATTACATTATTTTACATATCTTTATATATAAACAGGGGAATAATTTGTTAGGTAACCATCCTATAAATGGTTCCTTACTTTATTTCCCGCTAGTCAATTATTTATACTATCACATTGAGGTTGTTATTGGTGCGCTTTTAAGAAATATGTATTGATCTATCAATTAGGGTGGATGAACCTAAGCCATTTCTTCTGTGCCATTATTAAGCTAGCTCGAAGTTTAGAAAATAAAAAGAGACTTTGAATCTTGTTATGTTAAATTTGTGACGTATATATTAGTGGGACAACATTAGGGTCGGCAAAGATCAAAAGGATACGGAGAAAGGCTGGCTAGAATTATGTTTCTTTTTTTTCATTTATTTACTTTGCTTGGTTTTGTAAAACGAATAATGGAAACCATGTGCTTTTCCTTGGTTAATTATGGAAAGGTATAGTGGAATCTCTATAAGAAGCCATTAAAATGTGTAATGAGACTCTCTCTCTTGATCATTATAGCATATGTTTTTAATTCCACTTCCCAATTATGCGGGCTTTATCTCTGTCGATCATAAAGGGAATCACATGGGTATTTCCTATTCATTTAGGGAGTTGAAACAGAAATTAAAGAATTAAACAAGAGTTTACCAGAATATATATCAAGTGGTTGTTAAAAGAGTATATAATAATTGTTAATGCTGATTCATTGTTAGTACAGTATAAGATTTTTTAAATTAGCGAAGAGACACTAAATCTGATTTTTCTCCATCTCCAAGCGTTTCAGTTCCAGAGTCTTAATCAGAAACTGTCGTTAGTGGCGTGACTTCTGGTTTAACGAAAGGATTAATTACTTAAACAGATAATGAATATTAATATTTTCAAATCGTTTGACTTTACAAGGTTACGGAATATTGTGATGAAATTTGTGTGATTAGATCATTTGTTTGATAAAGTAAAAGTAGTAATGGTAAATGGTGCGTCTGACAAAGTCGTGACGAGAGATATTCTGTTCAAAGCATAATGACTAATTGGTCATTGGTAAATAGCGGGTCTGAGAGAAAAAAAAAACACAGAGTCTCATCCAAATAGAAATGCTTTATTAGTATTGGTGTTTGTGCAGCTCAAAATTCATGCATCTTTTGTGCACTTTTTGTTCAGATGGAACATGAAACT</genome_strand>
        <mrna_strand>TCGACCGGCCGGTGTTTGAGTTTAAGATGGGGAATTGCCAAGCTGCAGAGGCAGCAACTGTAGTGATTCAGCATCCAGGCAATAAAATTGAGAGGATTTACTGGTCTATAAGTGCGCATGAAGTCATGAGTTCGAATCCTGGCCACTACGTCGGCCTTGTTATCACTTCTCCAACGGGGAGAACACACAACGGTTCGCCCGTCAGGCAGCTTAAGCTTCTCCGCCCCGGAGATACTTTGCTTCTTGGACAAGTTTATCGACTCATCTGCTTCGAAG...........................................................................ATGTACTAAAAGAGTTTGCTGCAAAGAAGTGCGTGAAACTTGGCAAGTTGCTCAAGGAAAGTGGAAGCCTTGTTCTCGATTCAAAGAAAATCTCCGTCGATTCTTCAGCAGTGAAAAACAAGCCCAAAATGGTGAATGGAATCCCAGCTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAACATGAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E463359" ref_strand="+" ref_description="SGN-E463359 [cPRO-14-M2]">
      <seq>atttcatttaccaccaaatttacttcattttctgccacgcttccgtacatcattattcacttcttcttcttcctctctttagctcatataaactccaaacaaaattacacaactgaaaaccgtgcgtacgtagtttttcttcccatattggtgattgaatttttctgtggaatcttctgcatcgttttatcaatcgatcgaccgaccggcgggtgtttgagtttaagatggggaattgccaagcggcagaggcagcaacagtagtgattcaacatccaggcaataaaattgagaggatttattggtctataagtgcacatgaagtcatgagttcgaatcctggccactacgtcgcccttgttatcacttctccaactgagagaacacacaatggttcgcccgtcaggcagcttaagcttctccgccccggtgatactttgcttcttggacaagtttatcgactcatcagcttcgaagatgtactaaaagagtttgctgcaaaaaagtgtgtgaaacttggcaagttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="58321" stop="56955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58022" g_stop="57829" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.835"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57828" i_stop="57681" i_length="148">
            <donor d_prob="0.590" d_score="0.90"/>
            <acceptor a_prob="0.731" a_score="0.76"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57680" g_stop="57381" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="477" r_length="293" r_score="0.937"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57380" i_stop="57306" i_length="75">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57305" g_stop="57255" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="528" r_length="51" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E463359" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.032" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E463359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58022" e_stop="57829"/>
          <exon e_start="57680" e_stop="57381"/>
          <exon e_start="57305" e_stop="57255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCATTTACCACCAAATTTACTTCATTTTCTGCCACGCTTCCTTACATCATTATTTTCCCCCTGTTACTACTTCTTCTTCTTCCTTCTCTTTAGCTCATATAAACTCCAAA-AAATTTACACAACTGAAAACCGTGCGT----AGTTTTTCTTCCTTTATTGGTGATTGAATTTTTTGTGTGGATTCTTCTGCATCGGTGAGTGTGTAGACTGTCAGAGTTCTCTCTGTTTTCATTCCTTTATTATTACTTGACAAGTCAGTTTTGGAGTAATCAATCATCTTCTTCTATTCATCTTTAACTTAACGCAGAAAATTAAAATTAAAATTTGTGCATTTTGATATAGTTTGCGCTCTGCATTATTAATCGATCGACCGGCCGGTGTTTGAGTTTAAGATGGGGAATTGCCAAGCGGCAGAGGCAGCAACTGTAGTGATTCAACATCCAGGCAATAAAATTGAGAGGATTTACTGGTCTATAAGTGCACATGAAGTCATGAGTTCGAATCCTGGCCACTACGTCGCCCTTGTTATCACTTCTCCAACGGGGAGAACACACAACGGTTCGCCCGTCAGGCAGCTTAAGCTTCTCCGCCCCGGAGATACTTTGCTTCTTGGACAAGTTTATCGACTCATCTGCTTCGAAGGTAAAAATAAAATATCTCAATTTGTTTTTTCTTCAATAATTTCTTATAATCTGATCGATCATTTTTTTTTTCCAGATGTACTAAAAGAGTTTGCTGCAAAGAAGTGCGTGAAACTTGGCAAGTTGC</genome_strand>
        <mrna_strand>ATTTCATTTACCACCAAATTTACTTCATTTTCTGCCACGCTTCCGTACATCATTA---T-----T----C-ACTTCTTCTTCTTCC-TCTCTTTAGCTCATATAAACTCCAAACAAAATTACACAACTGAAAACCGTGCGTACGTAGTTTTTCTTCCCATATTGGTGATTGAA-TTTTTCTGTGGAATCTTCTGCATCG....................................................................................................................................................TTT----TAT-CA--ATCGATCGACCGACCGGCGGGTGTTTGAGTTTAAGATGGGGAATTGCCAAGCGGCAGAGGCAGCAACAGTAGTGATTCAACATCCAGGCAATAAAATTGAGAGGATTTATTGGTCTATAAGTGCACATGAAGTCATGAGTTCGAATCCTGGCCACTACGTCGCCCTTGTTATCACTTCTCCAACTGAGAGAACACACAATGGTTCGCCCGTCAGGCAGCTTAAGCTTCTCCGCCCCGGTGATACTTTGCTTCTTGGACAAGTTTATCGACTCATCAGCTTCGAAG...........................................................................ATGTACTAAAAGAGTTTGCTGCAAAAAAGTGTGTGAAACTTGGCAAGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E704741" ref_strand="+" ref_description="SGN-E704741 [FA25AE08]">
      <seq>ccctttgactggtaatgggtcaagggaggataatgaattattgtctccttccaaggaagggaaaggaaagagattatggaagaaagtgaagtaccagcttgtggagtatcattcattgcctgggtatttgaaagacaacgaatacattctgggtcattaccgggccgaatggccattgaagcaagcattgctcagcatcttcacaattcacaatgagaccctcaatgtttggacgcatttgatagggttcttcctcttccttgcgctcacaatttatactgcaaccaaagttcccaaggttgtagatctacattccttacagaatctgcctgatgtgctaaggaaggctgatttgcacaaattacaagcagaacttttaacttgtcttccttctttgccgtatatgcctgatttgcacaaacttcgagatggtttgctacgttcaccctctaattggcatattattgacctcctgcacaactgtctgcctgagcgattttcccacagcaaccatacagatgtttgtgtactgcggagtgtaaaagaagatgtggcaaatatattagcaccattgctggtgagaccaataactcgctggccattctatgccttccttggtggggcaatgttttgtttgttagcaagcagcacatgtcatttactttcttgccattcagagcgtttatcatacatcatgttgaggctcgactatgctggtatcgctgccctgatatcaacttcattttaccctccggtctatcattccttcatgtgttaccccttcttttgcaatctgtacctgggatttattacccctcctgggaattggcacaatcttgggttccctacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="65315" stop="68292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65611" g_stop="65844" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65845" i_stop="66553" i_length="709">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66554" g_stop="66851" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="532" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66852" i_stop="67673" i_length="822">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67674" g_stop="67992" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="852" r_length="320" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E704741" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65611" e_stop="65844"/>
          <exon e_start="66554" e_stop="66851"/>
          <exon e_start="67674" e_stop="67992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTGACTGGTAATGGGTCAAGGGAGGATAATGAATTATTGTCTCCTTCCAAGGAAGGGAAAGGAAAGAGATTATGGAAGAAAGTGAAGTACCAGCTTGTGGAGTATCATTCATTGCCTGGGTATTTGAAAGACAACGAATACATTCTGGGTCATTACCGGGCCGAATGGCCATTGAAGCAAGCATTGCTCAGCATCTTCACAATTCACAATGAGACCCTCAATGTTTGGACGTAAGAGTTACTTTTAACAATCCTCTTATTACTCCGCTTTCATTTTTTTTATAGGATACTTGTGCCTTTCTCTTCCTGTTTACATTCTTTTGTTTAATTGACTATTCCCCGATTAGAAAATGCGATAAGTTTTACGTATATATGTGTTGGATTAATTGAATTTTGGACTCAAAGTTCTTCATCTTTCATTGTTGTGGGAAGTATTAGCCCATTAGGTCCTTTAAGTTGTTGAAAAGGGGTCAATCAGTCATTTAGCTGCTGTTCTAAGATGAGGATCTGTACAGGCTGAAAATGTACCATTTATTATTCTTTGTTTGAAAGGGTTATTGGATCGATTGTTATGATTAATAGAAATTTGATGATAATTACATGAAGTGTTTTGCTACTTCAGTCATTTACATTCTGTCTTAGGAGAACTGATCTATACAGTTGCCACAAAAATTTAGAAAATGATGACAAATACTAGGTAAGTCATATTCAAAGAGTAAACTATGCATTCTATGATTGTGCTTTAGAAGGTGTTTAGGTACTAGGCTGACCATAGGCTCTACTCTTTGAATTTCCTTACTGAAGCGGCAACTGCTGGTTCCTTTGGTTCATTGCTTTGCCAAATGTTCTGTTTATGTTATCCTGATCCTGACCTACTGATTGAGAAAAAGAAGCTATAACAGATTGCTGAACAGGATCTTGATTTTCCTACTTGTTATAGGCATTTGATAGGGTTCTTCCTCTTCCTTGCGCTCACAATTTATACTGCAACCAAAGTTCCCAAGGTTGTAGATCTACATTCCTTACAGAATCTGCCTGATGTGCTAAGGAAGGCTGATTTGCACAAATTACAAGCAGAACTTTTAACTTGTCTTCCTTCTTTGCCGTATATGCCTGATTTGCACAAACTTCGAGATGGTTTGCTACGTTCACCCTCTAATTGGCATATTATTGACCTCCTGCACAACTGTCTGCCTGAGCGATTTTCCCACAGCAACCATACAGATGTTTGTGTACTGGTAAGAATGCCTTATTCAACTACTGGTTGCTGTATAATTATTCGGACACATTGTATTGCTTGTTTAGTTCGATTTCATCTTATTGATACCATTTCGATCTGTAATAAATGCTATCAAGACGAATTTGCTTGGCTAGGAATTCACAAGTCCATTGTGGAGTGTGCATCTCATGGACCTGTCATGCATCCTTTAATGAAAAAGAGGACATGGAACTGTTAGAAAGTTGGAGTTACTACTGATGCTTAAATATAAGAATTCTTCCAAATGATATTACTGCTTTTAATACTTCACCCCTGAAAAATGTAATCTAAAGTTTTCCTTGCTCTGATAATTATCGATAAGATTGTCTCTGGTCTGAAGTTTACTTTTACTCTTGTTAGGGTATGTTTGTGGTATTTAATTTATATAATTTATTGATTTTTTCTTATGGGGCTGGGCTGGTTGCAACCCCACTCATTTTTCATAACTGAAAACATAGTAATGTAGAATTCTTCTATTATTATAAATAATTGACACAGTTAATAGTAATACTGTTATGTCTAATGTGGATCACTCCACTAAGCCATAGCATATCAACTAGCTACTCTTAGGCTGCATGTTAAAGCAATAAAGTCCCACATTAATAGTTAATGAGATGGGTGGACTCCTTTTAAGGCTTAGCAATCCTCCTCCCTTTGAGCTAGCTTTTGGGGTGTGAATTAGGCCTAAATCCTAAGAGGTAAGTTAGGCCTAGCTTTTGAGGGAGGAGTAAGTTAGGCCTAAGACCTAATTTAAGACTGCCTCTTAGTAAACTGATATTTCACTATTGTACAATCTTTGCAGCGGAGTGTAAAAGAAGATGTGGCAAATATATTAGCACCATTGCTGGTGAGACCAATAACTCGCTGGCCATTCTATGCCTTCCTTGGTGGGGCAATGTTTTGTTTGTTAGCAAGCAGCACATGTCATTTACTTTCTTGCCATTCAGAGCGTTTATCATACATCATGTTGAGGCTCGACTATGCTGGTATCGCTGCCCTGATATCAACTTCATTTTACCCTCCGGTCTATTATTCCTTCATGTGTTACCCCTTCTTTTGCAATCTGTACCTGGGATTTATTA-CCCTCCTGGGAATTGGCACAATCTTGGGTTCCCTACTTC</genome_strand>
        <mrna_strand>CCCTTTGACTGGTAATGGGTCAAGGGAGGATAATGAATTATTGTCTCCTTCCAAGGAAGGGAAAGGAAAGAGATTATGGAAGAAAGTGAAGTACCAGCTTGTGGAGTATCATTCATTGCCTGGGTATTTGAAAGACAACGAATACATTCTGGGTCATTACCGGGCCGAATGGCCATTGAAGCAAGCATTGCTCAGCATCTTCACAATTCACAATGAGACCCTCAATGTTTGGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTGATAGGGTTCTTCCTCTTCCTTGCGCTCACAATTTATACTGCAACCAAAGTTCCCAAGGTTGTAGATCTACATTCCTTACAGAATCTGCCTGATGTGCTAAGGAAGGCTGATTTGCACAAATTACAAGCAGAACTTTTAACTTGTCTTCCTTCTTTGCCGTATATGCCTGATTTGCACAAACTTCGAGATGGTTTGCTACGTTCACCCTCTAATTGGCATATTATTGACCTCCTGCACAACTGTCTGCCTGAGCGATTTTCCCACAGCAACCATACAGATGTTTGTGTACTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAGTGTAAAAGAAGATGTGGCAAATATATTAGCACCATTGCTGGTGAGACCAATAACTCGCTGGCCATTCTATGCCTTCCTTGGTGGGGCAATGTTTTGTTTGTTAGCAAGCAGCACATGTCATTTACTTTCTTGCCATTCAGAGCGTTTATCATACATCATGTTGAGGCTCGACTATGCTGGTATCGCTGCCCTGATATCAACTTCATTTTACCCTCCGGTCTATCATTCCTTCATGTGTTACCCCTTCTTTTGCAATCTGTACCTGGGATTTATTACCCCTCCTGGGAATTGGCACAATCTTGGGTTCCCTACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E698476" ref_strand="+" ref_description="SGN-E698476 [FA06BH12]">
      <seq>cctccagaggaaagtgaagtaccagcttgtggagtatcattccttgcctgggtatttgaaagacaacgaatacattctgggtcattaccgggccgaatggccattgaagcaagcattgctcagcatcttcacaattcacaatgagaccctcaatgtttggacgcatttgatagggttcttcctcttccttgcgctcacaatttatactgcaaccaaagttcccaaggttgtagatctacattccttacagaatctgcctgatgtgctaaggaaggctgatttgcacaaattacaagcagaacttttaacttgtcttccttctttgccgtatatgcctgatttgcacaaacttcgagatggtttgctacgttcaccctctaattggcatattattgacctcctgcacaactgtctgcctgagcgattttcccacagcaaccatacagatgtttgtgtactgcggagtgtaaaagaagatgtggcaaatatattagcaccattgctggtgagaccaataactcgctggccattctatgccttccttggtggggcaatgttttgtttgttagcaagcagcacatgtcatttactttcttgccattcagagcgtttatcatacatcatgttgaggctcgactatgctggtatcgctgccctgatatcaacttcattttaccctccggtctattattccttcatgtgttaccccttcttttgcaatctgtacctgggatttattaccctcctgggaattggcacaatcttgggttccctacttcctgtgttccagactcccgaatatcngagtattcgagcatctctattctttggaatgggcctgtcaggtgcggtacctattctgcacaagctggttttgttttggcaccaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="65389" stop="68404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65683" g_stop="65844" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65845" i_stop="66553" i_length="709">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.774" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66554" g_stop="66851" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="460" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66852" i_stop="67673" i_length="822">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67674" g_stop="68104" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="891" r_length="431" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E698476" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>891</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65683" e_stop="65844"/>
          <exon e_start="66554" e_stop="66851"/>
          <exon e_start="67674" e_stop="68104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATGGAAGAAAGTGAAGTACCAGCTTGTGGAGTATCATTCATTGCCTGGGTATTTGAAAGACAACGAATACATTCTGGGTCATTACCGGGCCGAATGGCCATTGAAGCAAGCATTGCTCAGCATCTTCACAATTCACAATGAGACCCTCAATGTTTGGACGTAAGAGTTACTTTTAACAATCCTCTTATTACTCCGCTTTCATTTTTTTTATAGGATACTTGTGCCTTTCTCTTCCTGTTTACATTCTTTTGTTTAATTGACTATTCCCCGATTAGAAAATGCGATAAGTTTTACGTATATATGTGTTGGATTAATTGAATTTTGGACTCAAAGTTCTTCATCTTTCATTGTTGTGGGAAGTATTAGCCCATTAGGTCCTTTAAGTTGTTGAAAAGGGGTCAATCAGTCATTTAGCTGCTGTTCTAAGATGAGGATCTGTACAGGCTGAAAATGTACCATTTATTATTCTTTGTTTGAAAGGGTTATTGGATCGATTGTTATGATTAATAGAAATTTGATGATAATTACATGAAGTGTTTTGCTACTTCAGTCATTTACATTCTGTCTTAGGAGAACTGATCTATACAGTTGCCACAAAAATTTAGAAAATGATGACAAATACTAGGTAAGTCATATTCAAAGAGTAAACTATGCATTCTATGATTGTGCTTTAGAAGGTGTTTAGGTACTAGGCTGACCATAGGCTCTACTCTTTGAATTTCCTTACTGAAGCGGCAACTGCTGGTTCCTTTGGTTCATTGCTTTGCCAAATGTTCTGTTTATGTTATCCTGATCCTGACCTACTGATTGAGAAAAAGAAGCTATAACAGATTGCTGAACAGGATCTTGATTTTCCTACTTGTTATAGGCATTTGATAGGGTTCTTCCTCTTCCTTGCGCTCACAATTTATACTGCAACCAAAGTTCCCAAGGTTGTAGATCTACATTCCTTACAGAATCTGCCTGATGTGCTAAGGAAGGCTGATTTGCACAAATTACAAGCAGAACTTTTAACTTGTCTTCCTTCTTTGCCGTATATGCCTGATTTGCACAAACTTCGAGATGGTTTGCTACGTTCACCCTCTAATTGGCATATTATTGACCTCCTGCACAACTGTCTGCCTGAGCGATTTTCCCACAGCAACCATACAGATGTTTGTGTACTGGTAAGAATGCCTTATTCAACTACTGGTTGCTGTATAATTATTCGGACACATTGTATTGCTTGTTTAGTTCGATTTCATCTTATTGATACCATTTCGATCTGTAATAAATGCTATCAAGACGAATTTGCTTGGCTAGGAATTCACAAGTCCATTGTGGAGTGTGCATCTCATGGACCTGTCATGCATCCTTTAATGAAAAAGAGGACATGGAACTGTTAGAAAGTTGGAGTTACTACTGATGCTTAAATATAAGAATTCTTCCAAATGATATTACTGCTTTTAATACTTCACCCCTGAAAAATGTAATCTAAAGTTTTCCTTGCTCTGATAATTATCGATAAGATTGTCTCTGGTCTGAAGTTTACTTTTACTCTTGTTAGGGTATGTTTGTGGTATTTAATTTATATAATTTATTGATTTTTTCTTATGGGGCTGGGCTGGTTGCAACCCCACTCATTTTTCATAACTGAAAACATAGTAATGTAGAATTCTTCTATTATTATAAATAATTGACACAGTTAATAGTAATACTGTTATGTCTAATGTGGATCACTCCACTAAGCCATAGCATATCAACTAGCTACTCTTAGGCTGCATGTTAAAGCAATAAAGTCCCACATTAATAGTTAATGAGATGGGTGGACTCCTTTTAAGGCTTAGCAATCCTCCTCCCTTTGAGCTAGCTTTTGGGGTGTGAATTAGGCCTAAATCCTAAGAGGTAAGTTAGGCCTAGCTTTTGAGGGAGGAGTAAGTTAGGCCTAAGACCTAATTTAAGACTGCCTCTTAGTAAACTGATATTTCACTATTGTACAATCTTTGCAGCGGAGTGTAAAAGAAGATGTGGCAAATATATTAGCACCATTGCTGGTGAGACCAATAACTCGCTGGCCATTCTATGCCTTCCTTGGTGGGGCAATGTTTTGTTTGTTAGCAAGCAGCACATGTCATTTACTTTCTTGCCATTCAGAGCGTTTATCATACATCATGTTGAGGCTCGACTATGCTGGTATCGCTGCCCTGATATCAACTTCATTTTACCCTCCGGTCTATTATTCCTTCATGTGTTACCCCTTCTTTTGCAATCTGTACCTGGGATTTATTACCCTCCTGGGAATTGGCACAATCTTGGGTTCCCTACTTCCTGTGTTCCAGACTCCCGAATATC-GAGTTATTCGAGCATCTCTATTCTTTGGAATGGGCCTGTCAGGTGCGGTACCTATTCTGCACAAGCTGGTTTTGTTTTGGCACCAACC</genome_strand>
        <mrna_strand>CCTCCAGAGGAAAGTGAAGTACCAGCTTGTGGAGTATCATTCCTTGCCTGGGTATTTGAAAGACAACGAATACATTCTGGGTCATTACCGGGCCGAATGGCCATTGAAGCAAGCATTGCTCAGCATCTTCACAATTCACAATGAGACCCTCAATGTTTGGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTGATAGGGTTCTTCCTCTTCCTTGCGCTCACAATTTATACTGCAACCAAAGTTCCCAAGGTTGTAGATCTACATTCCTTACAGAATCTGCCTGATGTGCTAAGGAAGGCTGATTTGCACAAATTACAAGCAGAACTTTTAACTTGTCTTCCTTCTTTGCCGTATATGCCTGATTTGCACAAACTTCGAGATGGTTTGCTACGTTCACCCTCTAATTGGCATATTATTGACCTCCTGCACAACTGTCTGCCTGAGCGATTTTCCCACAGCAACCATACAGATGTTTGTGTACTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAGTGTAAAAGAAGATGTGGCAAATATATTAGCACCATTGCTGGTGAGACCAATAACTCGCTGGCCATTCTATGCCTTCCTTGGTGGGGCAATGTTTTGTTTGTTAGCAAGCAGCACATGTCATTTACTTTCTTGCCATTCAGAGCGTTTATCATACATCATGTTGAGGCTCGACTATGCTGGTATCGCTGCCCTGATATCAACTTCATTTTACCCTCCGGTCTATTATTCCTTCATGTGTTACCCCTTCTTTTGCAATCTGTACCTGGGATTTATTACCCTCCTGGGAATTGGCACAATCTTGGGTTCCCTACTTCCTGTGTTCCAGACTCCCGAATATCNGAG-TATTCGAGCATCTCTATTCTTTGGAATGGGCCTGTCAGGTGCGGTACCTATTCTGCACAAGCTGGTTTTGTTTTGGCACCAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E613543" ref_strand="+" ref_description="SGN-E613543 [63319]">
      <seq>agaaagatggatgcctgggaagtttgacattgctggccacagccaccaactatttcatgtactcgtggtggcaggggcttatactcattaccacgctggattggtttatctgaggtggcgggacctgcaagggtgctaagaaccactcaagaactgaaaagtcagtcagaatccttagttcaattgtatgtaaacgtagagaagatgtttcgtttgcccatcttcgttaataaatgttccatttagaaagattgattctctaatatagtatatgatcaggctcaatatgtactagtgtaatatgtttgttggtataatctgtatttaagtatcttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="67889" stop="68823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68189" g_stop="68534" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E613543" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E613543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68189" e_stop="68534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGATGGATGCCTGGGAAGTTTGACATTGCTGGCCACAGCCACCAACTATTTCATGTACTCGTGGTGGCAGGGGCTTATACGCATTACCGCGCTGGATTGGTTTATCTGAGGTGGCGGGACCTGCAAGGGTGCTAAGATCCACTCAAAAACTGATAAGTCAGTGAGAATTCTTAGTTCAATTGTACGTAAACGTAGAGAAGATGTTTCGTTTGTCCATCTTCGTTAATAAATGTTCCATTTAGAAAGATTGATCCTCTAGACTCTAGTACAGTATATGATCAGTCTCAATATGTACTAGTGTATTATG--T-TTGGTATGATCTGTATTTAAGTTTTTTAGAGAAT</genome_strand>
        <mrna_strand>AGAAAGATGGATGCCTGGGAAGTTTGACATTGCTGGCCACAGCCACCAACTATTTCATGTACTCGTGGTGGCAGGGGCTTATACTCATTACCACGCTGGATTGGTTTATCTGAGGTGGCGGGACCTGCAAGGGTGCTAAGAACCACTCAAGAACTGAAAAGTCAGTCAGAATCCTTAGTTCAATTGTATGTAAACGTAGAGAAGATGTTTCGTTTGCCCATCTTCGTTAATAAATGTTCCATTTAGAAAGATTGATTCTCTA-A---TA-T--AGTATATGATCAGGCTCAATATGTACTAGTGTAATATGTTTGTTGGTATAATCTGTATTTAAGTATCTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E746024" ref_strand="+" ref_description="SGN-E746024 [GI|47105378]">
      <seq>gagacaatggcagcaagtttagtgaggtgatgaacacttgtttctactcacttcacttcaccgacacccatctccttatctacttttctatcgtcacatactcgacggaatttgtatgctttcttagttactgccaaaattgctcttcgaactatcttcttaacacacagaaccaaagctggacacaatgtccagtagatggtgacaacttttttattgctactagacgtaaagccagcttgcctgggtaacgtatgcactccctcataaaatggtaacgcctcagttgccccaaactcatacatcttacacatccatggctaagcaaaactgtagaagtaaaatttcttctattttctctgatggatttctctttgctggtgcaagtattgtggctttgctagtaatatgggccttttggtccttcatgagcactagtccaaatgccgatcccagttttttaaccacttccgccgaccaaaactccgccttgaaaactcaggtagacccggtttcattaggcttcaatttacggtacgacccgcccgacccgactttctatgacgacccggatttgagttacactatggagaagccgattaagaagtgggacgagaaacgaaggcaatggctgaatttgcatccctctttcatccccggagcagaggaacggattctgatggtttccggttcacagtcgacgccgtgtaagaacccaataggcgaccatttgctgcttagattcttcaagaacaaagtagactactgccgaatccacgggtacgatattttttacaacaacgttttacttcagcctaagatgtggtcgttttgggcgaaaatgccggcgattaaagctgccatgatagctcatcctgaaactgagtggatctggtgggtcgattcagatgctgcgttcaccgacatggacttcaaacttcctttggatcgttacaaagaccataatttcgtacttcatggttgggaaaagttattatacgagcaacaaagctggacaagcatcaatgccggagttttcttgattcggaactgtcaatggtccatggacttaatggaaacttgggcgaaaatggggccacagtcaccggaatacgacaagtggggtgaaatcttacatacaactttcaaagacaagatattccaggaatcggatgaccaatccggtctagcatatctacttttgaaggaaaaggaaaaatggggtaacaaaatatacgtagaagggggatattacttcgaggggtattgggtggaaatcgtgggaacgtacgataacatcaccgacaggtatttagcaatagagaaaagtgaagggaggctaagaagaagacacgcagagagggtgagtgagagttatgctagtgtatgggaagaacaccttaaggaagctgggtatgggagatacagttggagaaggccattcatcacacatttcacagggtgtcagccatgtagtggagatcataatcagatgtattctggtgaaacttgttttgatgctatgcagaaagctttgaattttgctgataatcaggtgttgagaaagtatgggtatatgcataaggatctgcttgattcttcctctgtttttcctgttccttttaactttcctgcctaatacttccgttcttttaagttctatgtatacacatgtatgtacctattttgtagtagtttgctttcgttttacttcgtatttttatggtgcaatgttgtaagctagttgtaatatggagtttaacttatatatagtcaccacttgaagcaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="74263" stop="76650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74562" g_stop="76349" g_length="1788"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1788" r_length="1788" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1789" polyA_stop="1808"/>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E746024" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1788</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74562" e_stop="76349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACAATGGCAGCAAGTTTAGTGAGGTGATGAACACTTGTTTCTACTCACTTCACTTCACCGACACCCATCTCCTTATCTACTTTTCTATCGTCACATACTCGACGGAATTTGTATGCTTTCTTAGTTACTGCCAAAATTGCTCTTCGAACTATCTTCTTAACACACAGAACCAAAGCTGGACACAATGTCCAGTAGATGGTGACAACTTTTTTATTGCTACTAGACGTAAAGCCAGCTTGCCTGGGTAACGTATGCACTCCCTCATAAAATGGTAACGCCTCAGTTGCCCCAAACTCATACATCTTACACATCCATGGCTAAGCAAAACTGTAGAAGTAAAATTTCTTCTATTTTCTCTGATGGATTTCTCTTTGCTGGTGCAAGTATTGTGGCTTTGCTAGTAATATGGGCCTTTTGGTCCTTCATGAGCACTAGTCCAAATGCCGATCCCAGTTTTTTAACCACTTCCGCCGACCAAAACTCCGCCTTGAAAACTCAGGTAGACCCGGTTTCATTAGGCTTCAATTTACGGTACGACCCGCCCGACCCGACTTTCTATGACGACCCGGATTTGAGTTACACTATGGAGAAGCCGATTAAGAAGTGGGACGAGAAACGAAGGCAATGGCTGAATTTGCATCCCTCTTTCATCCCCGGAGCAGAGGAACGGATTCTGATGGTTTCCGGTTCACAGTCGACGCCGTGTAAGAACCCAATAGGCGACCATTTGCTGCTTAGATTCTTCAAGAACAAAGTAGACTACTGCCGAATCCACGGGTACGATATTTTTTACAACAACGTTTTACTTCAGCCTAAGATGTGGTCGTTTTGGGCGAAAATGCCGGCGATTAAAGCTGCCATGATAGCTCATCCTGAAACTGAGTGGATCTGGTGGGTCGATTCAGATGCTGCGTTCACCGACATGGACTTCAAACTTCCTTTGGATCGTTACAAAGACCATAATTTCGTACTTCATGGTTGGGAAAAGTTATTATACGAGCAACAAAGCTGGACAAGCATCAATGCCGGAGTTTTCTTGATTCGGAACTGTCAATGGTCCATGGACTTAATGGAAACTTGGGCGAAAATGGGGCCACAGTCACCGGAATACGACAAGTGGGGTGAAATCTTACATACAACTTTCAAAGACAAGATATTCCAGGAATCGGATGACCAATCCGGTCTAGCATATCTACTTTTGAAGGAAAAGGAAAAATGGGGTAACAAAATATACGTAGAAGGGGGATATTACTTCGAGGGGTATTGGGTGGAAATCGTGGGAACGTACGATAACATCACCGACAGGTATTTAGCAATAGAGAAAAGTGAAGGGAGGCTAAGAAGAAGACACGCAGAGAGGGTGAGTGAGAGTTATGCTAGTGTATGGGAAGAACACCTTAAGGAAGCTGGGTATGGGAGATACAGTTGGAGAAGGCCATTCATCACACATTTCACAGGGTGTCAGCCATGTAGTGGAGATCATAATCAGATGTATTCTGGTGAAACTTGTTTTGATGCTATGCAGAAAGCTTTGAATTTTGCTGATAATCAGGTGTTGAGAAAGTATGGGTATATGCATAAGGATCTGCTTGATTCTTCCTCTGTTTTTCCTGTTCCTTTTAACTTTCCTGCCTAATACTTCCGTTCTTTTAAGTTCTATGTATACACATGTATGTACCTATTTTGTAGTAGTTTGCTTTCGTTTTACTTCGTATTTTTATGGTGCAATGTTGTAAGCTAGTTGTAATATGGAGTTTAACTTATATATAGTCACCACTTGAAGAA</genome_strand>
        <mrna_strand>GAGACAATGGCAGCAAGTTTAGTGAGGTGATGAACACTTGTTTCTACTCACTTCACTTCACCGACACCCATCTCCTTATCTACTTTTCTATCGTCACATACTCGACGGAATTTGTATGCTTTCTTAGTTACTGCCAAAATTGCTCTTCGAACTATCTTCTTAACACACAGAACCAAAGCTGGACACAATGTCCAGTAGATGGTGACAACTTTTTTATTGCTACTAGACGTAAAGCCAGCTTGCCTGGGTAACGTATGCACTCCCTCATAAAATGGTAACGCCTCAGTTGCCCCAAACTCATACATCTTACACATCCATGGCTAAGCAAAACTGTAGAAGTAAAATTTCTTCTATTTTCTCTGATGGATTTCTCTTTGCTGGTGCAAGTATTGTGGCTTTGCTAGTAATATGGGCCTTTTGGTCCTTCATGAGCACTAGTCCAAATGCCGATCCCAGTTTTTTAACCACTTCCGCCGACCAAAACTCCGCCTTGAAAACTCAGGTAGACCCGGTTTCATTAGGCTTCAATTTACGGTACGACCCGCCCGACCCGACTTTCTATGACGACCCGGATTTGAGTTACACTATGGAGAAGCCGATTAAGAAGTGGGACGAGAAACGAAGGCAATGGCTGAATTTGCATCCCTCTTTCATCCCCGGAGCAGAGGAACGGATTCTGATGGTTTCCGGTTCACAGTCGACGCCGTGTAAGAACCCAATAGGCGACCATTTGCTGCTTAGATTCTTCAAGAACAAAGTAGACTACTGCCGAATCCACGGGTACGATATTTTTTACAACAACGTTTTACTTCAGCCTAAGATGTGGTCGTTTTGGGCGAAAATGCCGGCGATTAAAGCTGCCATGATAGCTCATCCTGAAACTGAGTGGATCTGGTGGGTCGATTCAGATGCTGCGTTCACCGACATGGACTTCAAACTTCCTTTGGATCGTTACAAAGACCATAATTTCGTACTTCATGGTTGGGAAAAGTTATTATACGAGCAACAAAGCTGGACAAGCATCAATGCCGGAGTTTTCTTGATTCGGAACTGTCAATGGTCCATGGACTTAATGGAAACTTGGGCGAAAATGGGGCCACAGTCACCGGAATACGACAAGTGGGGTGAAATCTTACATACAACTTTCAAAGACAAGATATTCCAGGAATCGGATGACCAATCCGGTCTAGCATATCTACTTTTGAAGGAAAAGGAAAAATGGGGTAACAAAATATACGTAGAAGGGGGATATTACTTCGAGGGGTATTGGGTGGAAATCGTGGGAACGTACGATAACATCACCGACAGGTATTTAGCAATAGAGAAAAGTGAAGGGAGGCTAAGAAGAAGACACGCAGAGAGGGTGAGTGAGAGTTATGCTAGTGTATGGGAAGAACACCTTAAGGAAGCTGGGTATGGGAGATACAGTTGGAGAAGGCCATTCATCACACATTTCACAGGGTGTCAGCCATGTAGTGGAGATCATAATCAGATGTATTCTGGTGAAACTTGTTTTGATGCTATGCAGAAAGCTTTGAATTTTGCTGATAATCAGGTGTTGAGAAAGTATGGGTATATGCATAAGGATCTGCTTGATTCTTCCTCTGTTTTTCCTGTTCCTTTTAACTTTCCTGCCTAATACTTCCGTTCTTTTAAGTTCTATGTATACACATGTATGTACCTATTTTGTAGTAGTTTGCTTTCGTTTTACTTCGTATTTTTATGGTGCAATGTTGTAAGCTAGTTGTAATATGGAGTTTAACTTATATATAGTCACCACTTGAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277322" ref_strand="+" ref_description="SGN-E277322 [cLEL-3-P12](-)">
      <seq>gtgctcatgaaggaccaaaaggcccatattactagcaaagccacaatacttgcaccagcaaagagaaatccatcagagaaaatagaagaaattttacttctacagttttgcttagccatggatgtgtaagatgtatgagtttggggcaactgaggcgttaccattttatgagggagtgcatacgttacccaggcaagctggctttacgtctagtagcaataaaaaagttgtcaccatctactggacattgtgtccagctttggttctgtgtgttaagaagatagttcgaagagcaattttggcagtaactaagagagcatacaaattccgtcgagtatgtgacgatcgaaaagtagataaggagatgggtgtcggtgaagtgaagtgagtagaaacaagtgttcatcacctcactaaacctcgtgccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="75296" stop="74270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74996" g_stop="74569" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E277322" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74996" e_stop="74569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTCATGAAGGACCAAAAGGCCCATATTACTAGCAAAGCCACAATACTTGCACCAGCAAAGAGAAATCCATCAGAGAAAATAGAAGAAATTTTACTTCTACAGTTTTGCTTAGCCATGGATGTGTAAGATGTATGAGTTTGGGGCAACTGAGGCGTTACCATTTTATGAGGGAGTGCATACGTTACCCAGGCAAGCTGGCTTTACGTCTAGTAGCAATAAAAAAGTTGTCACCATCTACTGGACATTGTGTCCAGCTTTGGTTCTGTGTGTTAAGAAGATAGTTCGAAGAGCAATTTTGGCAGTAACTAAGAAAGCATACAAATTCCGTCGAGTATGTGACGATAGAAAAGTAGATAAGGAGATGGGTGTCGGTGAAGTGAAGTGAGTAGAAACAAGTGTTCATCACCTCACTAAACTTGCTGCCA</genome_strand>
        <mrna_strand>GTGCTCATGAAGGACCAAAAGGCCCATATTACTAGCAAAGCCACAATACTTGCACCAGCAAAGAGAAATCCATCAGAGAAAATAGAAGAAATTTTACTTCTACAGTTTTGCTTAGCCATGGATGTGTAAGATGTATGAGTTTGGGGCAACTGAGGCGTTACCATTTTATGAGGGAGTGCATACGTTACCCAGGCAAGCTGGCTTTACGTCTAGTAGCAATAAAAAAGTTGTCACCATCTACTGGACATTGTGTCCAGCTTTGGTTCTGTGTGTTAAGAAGATAGTTCGAAGAGCAATTTTGGCAGTAACTAAGAGAGCATACAAATTCCGTCGAGTATGTGACGATCGAAAAGTAGATAAGGAGATGGGTGTCGGTGAAGTGAAGTGAGTAGAAACAAGTGTTCATCACCTCACTAAACCTCGTGCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203194" ref_strand="+" ref_description="SGN-E203194 [cLEB-3-J24]">
      <seq>gcacgaggtttagtgaggtgatgaacacttgtttctactcacttcacttcaccgacacccatctccttatctacttttctatcgtcacatactcgacggaatttgtatgctttcttagttactgccaaaattgctcttcgaactatcttcttaacacacagaaccaaagctggacacaatgtccagtagatggtgacaacttttttattgctactagacgtaaagccagcttgcctgggtaacgtatgcactccctcataaaatggtaacgcctcagttgccccaaactcatacatcttacacatccatggctaagcaaaactgtagaagtaaaatttcttctattttctctgatggatttctctttgctggtgcaagtattgtggctttgctagtaatatgggccttttggtccttcatgagcactagtccaaatgccgatcccagttttttaaccacttccgccgaccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="74271" stop="75342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74571" g_stop="75042" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E203194" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74571" e_stop="75042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCAAGTTTAGTGAGGTGATGAACACTTGTTTCTACTCACTTCACTTCACCGACACCCATCTCCTTATCTACTTTTCTATCGTCACATACTCGACGGAATTTGTATGCTTTCTTAGTTACTGCCAAAATTGCTCTTCGAACTATCTTCTTAACACACAGAACCAAAGCTGGACACAATGTCCAGTAGATGGTGACAACTTTTTTATTGCTACTAGACGTAAAGCCAGCTTGCCTGGGTAACGTATGCACTCCCTCATAAAATGGTAACGCCTCAGTTGCCCCAAACTCATACATCTTACACATCCATGGCTAAGCAAAACTGTAGAAGTAAAATTTCTTCTATTTTCTCTGATGGATTTCTCTTTGCTGGTGCAAGTATTGTGGCTTTGCTAGTAATATGGGCCTTTTGGTCCTTCATGAGCACTAGTCCAAATGCCGATCCCAGTTTTTTAACCACTTCCGCCGACCAA</genome_strand>
        <mrna_strand>GCACGAGGTTTAGTGAGGTGATGAACACTTGTTTCTACTCACTTCACTTCACCGACACCCATCTCCTTATCTACTTTTCTATCGTCACATACTCGACGGAATTTGTATGCTTTCTTAGTTACTGCCAAAATTGCTCTTCGAACTATCTTCTTAACACACAGAACCAAAGCTGGACACAATGTCCAGTAGATGGTGACAACTTTTTTATTGCTACTAGACGTAAAGCCAGCTTGCCTGGGTAACGTATGCACTCCCTCATAAAATGGTAACGCCTCAGTTGCCCCAAACTCATACATCTTACACATCCATGGCTAAGCAAAACTGTAGAAGTAAAATTTCTTCTATTTTCTCTGATGGATTTCTCTTTGCTGGTGCAAGTATTGTGGCTTTGCTAGTAATATGGGCCTTTTGGTCCTTCATGAGCACTAGTCCAAATGCCGATCCCAGTTTTTTAACCACTTCCGCCGACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E707387" ref_strand="+" ref_description="SGN-E707387 [FA32DD12]">
      <seq>cgtttagtgaggtgatgaacacttgtttctactcacttcacttcatcgacacccatctccttatctacttttctatcgtcacatactcgacggaatttgtatgctttcttagttactgccaaaattgctcttcgaactatcttcttaacacacagaaccaaagctggacacaatgtccagtagatggtgacaacttttttattgctactagacgtaaagccagcttgcctgggtaacgtatgcactccctcataaaatggtaacgcctcagttgccccaaactcatacatcttacacatccatggctaagcaaaactgtagaagtaaaatttcttctattttctctgatggatttctctttgctggtgcaagtattgtggctttgctagtaatatgggccttttggtccttcatgagcactagtccaaatgccgatcccagttttttaaccacttccgccgaccaaaactccgccttgaaaactcaggtagacccggtttcattaggcttcaatttacggtacgacccgcccgacccgactttctatgacgacccggatttgagttacactatggagaagccgattaagaagtgggacgagaaacgaaggcaatggctgaatttgcatccctctttcatccccggagcagaggaacggattctgatggtttccggttcacagtcgacgccgtgtaagaacccaataggcgaccatttgctgcttagattcttcaagaacaaagtagactactgccgaatccacgggtacgatatttttttacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="74278" stop="75659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74577" g_stop="75359" g_length="783"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="784" r_length="784" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E707387" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74577" e_stop="75359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTAGTGAGGTGATGAACACTTGTTTCTACTCACTTCACTTCACCGACACCCATCTCCTTATCTACTTTTCTATCGTCACATACTCGACGGAATTTGTATGCTTTCTTAGTTACTGCCAAAATTGCTCTTCGAACTATCTTCTTAACACACAGAACCAAAGCTGGACACAATGTCCAGTAGATGGTGACAACTTTTTTATTGCTACTAGACGTAAAGCCAGCTTGCCTGGGTAACGTATGCACTCCCTCATAAAATGGTAACGCCTCAGTTGCCCCAAACTCATACATCTTACACATCCATGGCTAAGCAAAACTGTAGAAGTAAAATTTCTTCTATTTTCTCTGATGGATTTCTCTTTGCTGGTGCAAGTATTGTGGCTTTGCTAGTAATATGGGCCTTTTGGTCCTTCATGAGCACTAGTCCAAATGCCGATCCCAGTTTTTTAACCACTTCCGCCGACCAAAACTCCGCCTTGAAAACTCAGGTAGACCCGGTTTCATTAGGCTTCAATTTACGGTACGACCCGCCCGACCCGACTTTCTATGACGACCCGGATTTGAGTTACACTATGGAGAAGCCGATTAAGAAGTGGGACGAGAAACGAAGGCAATGGCTGAATTTGCATCCCTCTTTCATCCCCGGAGCAGAGGAACGGATTCTGATGGTTTCCGGTTCACAGTCGACGCCGTGTAAGAACCCAATAGGCGACCATTTGCTGCTTAGATTCTTCAAGAACAAAGTAGACTACTGCCGAATCCACGGGTACGATA-TTTTTTACAA</genome_strand>
        <mrna_strand>CGTTTAGTGAGGTGATGAACACTTGTTTCTACTCACTTCACTTCATCGACACCCATCTCCTTATCTACTTTTCTATCGTCACATACTCGACGGAATTTGTATGCTTTCTTAGTTACTGCCAAAATTGCTCTTCGAACTATCTTCTTAACACACAGAACCAAAGCTGGACACAATGTCCAGTAGATGGTGACAACTTTTTTATTGCTACTAGACGTAAAGCCAGCTTGCCTGGGTAACGTATGCACTCCCTCATAAAATGGTAACGCCTCAGTTGCCCCAAACTCATACATCTTACACATCCATGGCTAAGCAAAACTGTAGAAGTAAAATTTCTTCTATTTTCTCTGATGGATTTCTCTTTGCTGGTGCAAGTATTGTGGCTTTGCTAGTAATATGGGCCTTTTGGTCCTTCATGAGCACTAGTCCAAATGCCGATCCCAGTTTTTTAACCACTTCCGCCGACCAAAACTCCGCCTTGAAAACTCAGGTAGACCCGGTTTCATTAGGCTTCAATTTACGGTACGACCCGCCCGACCCGACTTTCTATGACGACCCGGATTTGAGTTACACTATGGAGAAGCCGATTAAGAAGTGGGACGAGAAACGAAGGCAATGGCTGAATTTGCATCCCTCTTTCATCCCCGGAGCAGAGGAACGGATTCTGATGGTTTCCGGTTCACAGTCGACGCCGTGTAAGAACCCAATAGGCGACCATTTGCTGCTTAGATTCTTCAAGAACAAAGTAGACTACTGCCGAATCCACGGGTACGATATTTTTTTACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345837" ref_strand="+" ref_description="SGN-E345837 [cTOF-18-N22]">
      <seq>gtgatgaacacttgtttctactcacttcacttcaccgacacccatctccttatctacttttctatcgtcacatactcgacggaatttgtatgctttcttagttactgccaaaattgctcttcgaactatcttcttaacacacagaaccaaagctggacacaatgtccagtagatggtgacaacttttttattgctactagacgtaaagccagcttgcctgggtaacgtatgcactccctcataaaatggtaacgcctcagttgccccaaactcatacatcttacacatccatggctaagcaaaactgtagaagtaaaatttcttctattttctctgatggatttctctttgctggtgcaagtattgtggctttgctagtaatatgggccttttggtccttcatgagcactagtccaaatgccgatcccagttttttaaccacttccgccgaccaaaactccgccttgaaaactcaggtagacccggtttcattaggcttcaatttacggtacgacccgcccgacccgactttctatgacgaacccggatttgagttacactatggagaagccgattaagaagtgggacgagaaacgaaggcaatggctgaatttgcatccctctttcatccccggagcagaggaacggattctgatggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="74288" stop="75546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74588" g_stop="75246" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E345837" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74588" e_stop="75246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATGAACACTTGTTTCTACTCACTTCACTTCACCGACACCCATCTCCTTATCTACTTTTCTATCGTCACATACTCGACGGAATTTGTATGCTTTCTTAGTTACTGCCAAAATTGCTCTTCGAACTATCTTCTTAACACACAGAACCAAAGCTGGACACAATGTCCAGTAGATGGTGACAACTTTTTTATTGCTACTAGACGTAAAGCCAGCTTGCCTGGGTAACGTATGCACTCCCTCATAAAATGGTAACGCCTCAGTTGCCCCAAACTCATACATCTTACACATCCATGGCTAAGCAAAACTGTAGAAGTAAAATTTCTTCTATTTTCTCTGATGGATTTCTCTTTGCTGGTGCAAGTATTGTGGCTTTGCTAGTAATATGGGCCTTTTGGTCCTTCATGAGCACTAGTCCAAATGCCGATCCCAGTTTTTTAACCACTTCCGCCGACCAAAACTCCGCCTTGAAAACTCAGGTAGACCCGGTTTCATTAGGCTTCAATTTACGGTACGACCCGCCCGACCCGACTTTCTATGACG-ACCCGGATTTGAGTTACACTATGGAGAAGCCGATTAAGAAGTGGGACGAGAAACGAAGGCAATGGCTGAATTTGCATCCCTCTTTCATCCCCGGAGCAGAGGAACGGATTCTGATGGTT</genome_strand>
        <mrna_strand>GTGATGAACACTTGTTTCTACTCACTTCACTTCACCGACACCCATCTCCTTATCTACTTTTCTATCGTCACATACTCGACGGAATTTGTATGCTTTCTTAGTTACTGCCAAAATTGCTCTTCGAACTATCTTCTTAACACACAGAACCAAAGCTGGACACAATGTCCAGTAGATGGTGACAACTTTTTTATTGCTACTAGACGTAAAGCCAGCTTGCCTGGGTAACGTATGCACTCCCTCATAAAATGGTAACGCCTCAGTTGCCCCAAACTCATACATCTTACACATCCATGGCTAAGCAAAACTGTAGAAGTAAAATTTCTTCTATTTTCTCTGATGGATTTCTCTTTGCTGGTGCAAGTATTGTGGCTTTGCTAGTAATATGGGCCTTTTGGTCCTTCATGAGCACTAGTCCAAATGCCGATCCCAGTTTTTTAACCACTTCCGCCGACCAAAACTCCGCCTTGAAAACTCAGGTAGACCCGGTTTCATTAGGCTTCAATTTACGGTACGACCCGCCCGACCCGACTTTCTATGACGAACCCGGATTTGAGTTACACTATGGAGAAGCCGATTAAGAAGTGGGACGAGAAACGAAGGCAATGGCTGAATTTGCATCCCTCTTTCATCCCCGGAGCAGAGGAACGGATTCTGATGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338248" ref_strand="+" ref_description="SGN-E338248 [cTOE-13-O15]">
      <seq>aacacttgtttctactcacttcacttcaccgacacccatctccttatctacttttctatcgtcacatactcgacggaatttgtatgctttcttagttactgccaaaattgctcttcgaactatcttcttaacacacagaaccaaagctggacacaatgtccagtagatggtgacaacttttttattgctactagacgtaaagccagcttgcctgggtaacgtatgcactccctcataaaatggtaacgcctcagttgccccaaactcatacatcttacacatccatggctaagcaaaactgtagaagtaaaatttcttctattttctctgatggatttctctttgctggtgcaagtattgtggctttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="74294" stop="75263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74594" g_stop="74963" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E338248" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74594" e_stop="74963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTTGTTTCTACTCACTTCACTTCACCGACACCCATCTCCTTATCTACTTTTCTATCGTCACATACTCGACGGAATTTGTATGCTTTCTTAGTTACTGCCAAAATTGCTCTTCGAACTATCTTCTTAACACACAGAACCAAAGCTGGACACAATGTCCAGTAGATGGTGACAACTTTTTTATTGCTACTAGACGTAAAGCCAGCTTGCCTGGGTAACGTATGCACTCCCTCATAAAATGGTAACGCCTCAGTTGCCCCAAACTCATACATCTTACACATCCATGGCTAAGCAAAACTGTAGAAGTAAAATTTCTTCTATTTTCTCTGATGGATTTCTCTTTGCTGGTGCAAGTATTGTGGCTTTGCT</genome_strand>
        <mrna_strand>AACACTTGTTTCTACTCACTTCACTTCACCGACACCCATCTCCTTATCTACTTTTCTATCGTCACATACTCGACGGAATTTGTATGCTTTCTTAGTTACTGCCAAAATTGCTCTTCGAACTATCTTCTTAACACACAGAACCAAAGCTGGACACAATGTCCAGTAGATGGTGACAACTTTTTTATTGCTACTAGACGTAAAGCCAGCTTGCCTGGGTAACGTATGCACTCCCTCATAAAATGGTAACGCCTCAGTTGCCCCAAACTCATACATCTTACACATCCATGGCTAAGCAAAACTGTAGAAGTAAAATTTCTTCTATTTTCTCTGATGGATTTCTCTTTGCTGGTGCAAGTATTGTGGCTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E338346" ref_strand="+" ref_description="SGN-E338346 [cTOE-13-F14]">
      <seq>ttgtttctactcacttcacttcaccgacacccatctccttatctacttttctatcgtcacatactcgacggaatttgtatgctttcttagttactgccaaaattgctcttcgaactatcttcttaacacacagaaccaaagctggacacaatgtccagtagatggtgacaacttttttattgctactagacgtaaagccagcttgcctgggtaacgtatgcactccctcataaaatggtaacgcctcagttgccccaaactcatacatcttacacatccatggctaagcaaaactgtagaagtaaaatttcttctattttctctgatggatttctctttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="74299" stop="75239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74599" g_stop="74939" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E338346" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74599" e_stop="74939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTCTACTCACTTCACTTCACCGACACCCATCTCCTTATCTACTTTTCTATCGTCACATACTCGACGGAATTTGTATGCTTTCTTAGTTACTGCCAAAATTGCTCTTCGAACTATCTTCTTAACACACAGAACCAAAGCTGGACACAATGTCCAGTAGATGGTGACAACTTTTTTATTGCTACTAGACGTAAAGCCAGCTTGCCTGGGTAACGTATGCACTCCCTCATAAAATGGTAACGCCTCAGTTGCCCCAAACTCATACATCTTACACATCCATGGCTAAGCAAAACTGTAGAAGTAAAATTTCTTCTATTTTCTCTGATGGATTTCTCTTTGC</genome_strand>
        <mrna_strand>TTGTTTCTACTCACTTCACTTCACCGACACCCATCTCCTTATCTACTTTTCTATCGTCACATACTCGACGGAATTTGTATGCTTTCTTAGTTACTGCCAAAATTGCTCTTCGAACTATCTTCTTAACACACAGAACCAAAGCTGGACACAATGTCCAGTAGATGGTGACAACTTTTTTATTGCTACTAGACGTAAAGCCAGCTTGCCTGGGTAACGTATGCACTCCCTCATAAAATGGTAACGCCTCAGTTGCCCCAAACTCATACATCTTACACATCCATGGCTAAGCAAAACTGTAGAAGTAAAATTTCTTCTATTTTCTCTGATGGATTTCTCTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699358" ref_strand="+" ref_description="SGN-E699358 [FA09DA09]">
      <seq>cgcctcagttgccccaaactcatacatcttacacatccatggctaagcaaaactgtagaagtaaaatttcttctattttctctgatggatttctctttgctggtgcaagtattgtggctttgctagtaatatgggccttttggtccttcatgagcactagtccaaatgccgatcccagttttttaaccacttccgccgaccaaaactccgccttgaaaactcaggtagacccggtttcattaggcttcaatttacggtacgacccgcccgacccgactttctatgacgacccggatttgagttacactatggagaagccgattaagaagtgggacgagaaacgaaggcaatggctgaatttgcatccctctttcatccccggagcagaggaacggattctgatggtttccggttcacagtcgacgccgtgtaagaacccaataggcgaccatttgctgcttagattcttcaagaacaaagtagactactgccgaatccacgggtacgatattttttacaacaacgttttacttcagcctaagatgtggtcgttttgggcgaaaatgccggcgattaaagctgccatgatagctcatcctgaaactgagtggatctggtgggtcgattcagatgctgcgttcaccgacatggacttcaaacttcctttggatcgttacaaagaccataatttcgtacttcatggttgggaaaagttattataccagcaacaaagctggaacagcatcaatgccggagttttcttgattcggaactgtcaatggtccatggacttaatggaaacttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="74540" stop="75946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74840" g_stop="75646" g_length="807"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="807" r_length="807" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E699358" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74840" e_stop="75646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCTCAGTTGCCCCAAACTCATACATCTTACACATCCATGGCTAAGCAAAACTGTAGAAGTAAAATTTCTTCTATTTTCTCTGATGGATTTCTCTTTGCTGGTGCAAGTATTGTGGCTTTGCTAGTAATATGGGCCTTTTGGTCCTTCATGAGCACTAGTCCAAATGCCGATCCCAGTTTTTTAACCACTTCCGCCGACCAAAACTCCGCCTTGAAAACTCAGGTAGACCCGGTTTCATTAGGCTTCAATTTACGGTACGACCCGCCCGACCCGACTTTCTATGACGACCCGGATTTGAGTTACACTATGGAGAAGCCGATTAAGAAGTGGGACGAGAAACGAAGGCAATGGCTGAATTTGCATCCCTCTTTCATCCCCGGAGCAGAGGAACGGATTCTGATGGTTTCCGGTTCACAGTCGACGCCGTGTAAGAACCCAATAGGCGACCATTTGCTGCTTAGATTCTTCAAGAACAAAGTAGACTACTGCCGAATCCACGGGTACGATATTTTTTACAACAACGTTTTACTTCAGCCTAAGATGTGGTCGTTTTGGGCGAAAATGCCGGCGATTAAAGCTGCCATGATAGCTCATCCTGAAACTGAGTGGATCTGGTGGGTCGATTCAGATGCTGCGTTCACCGACATGGACTTCAAACTTCCTTTGGATCGTTACAAAGACCATAATTTCGTACTTCATGGTTGGGAAAAGTTATTATACGAGCAACAAAGCTGGACAAGCATCAATGCCGGAGTTTTCTTGATTCGGAACTGTCAATGGTCCATGGACTTAATGGAAACTTGGG</genome_strand>
        <mrna_strand>CGCCTCAGTTGCCCCAAACTCATACATCTTACACATCCATGGCTAAGCAAAACTGTAGAAGTAAAATTTCTTCTATTTTCTCTGATGGATTTCTCTTTGCTGGTGCAAGTATTGTGGCTTTGCTAGTAATATGGGCCTTTTGGTCCTTCATGAGCACTAGTCCAAATGCCGATCCCAGTTTTTTAACCACTTCCGCCGACCAAAACTCCGCCTTGAAAACTCAGGTAGACCCGGTTTCATTAGGCTTCAATTTACGGTACGACCCGCCCGACCCGACTTTCTATGACGACCCGGATTTGAGTTACACTATGGAGAAGCCGATTAAGAAGTGGGACGAGAAACGAAGGCAATGGCTGAATTTGCATCCCTCTTTCATCCCCGGAGCAGAGGAACGGATTCTGATGGTTTCCGGTTCACAGTCGACGCCGTGTAAGAACCCAATAGGCGACCATTTGCTGCTTAGATTCTTCAAGAACAAAGTAGACTACTGCCGAATCCACGGGTACGATATTTTTTACAACAACGTTTTACTTCAGCCTAAGATGTGGTCGTTTTGGGCGAAAATGCCGGCGATTAAAGCTGCCATGATAGCTCATCCTGAAACTGAGTGGATCTGGTGGGTCGATTCAGATGCTGCGTTCACCGACATGGACTTCAAACTTCCTTTGGATCGTTACAAAGACCATAATTTCGTACTTCATGGTTGGGAAAAGTTATTATACCAGCAACAAAGCTGGAACAGCATCAATGCCGGAGTTTTCTTGATTCGGAACTGTCAATGGTCCATGGACTTAATGGAAACTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E711413" ref_strand="+" ref_description="SGN-E711413 [FB01DG08]">
      <seq>cagtacaaagctggacaagcatcaatgccggagttttcttgattcggaactgtcaatggtccatggacttaatggaaacttgggcgaaaatggggccacagtcaccggaatacgacaagtggggtgaaatcttacatacaactttcaaagacaagatattccaggaatcggatgaccaatccggtctagcatatctacttttgaaggaaaaggaaaaatggggtaacaaaatatacgtagaagggggatattacttcgaggggtattgggtggaaatcgtgggaacgtacgataacatcaccgacaggtatttagcaatagagaaaagtgaagggaggctaagaagaagacacgcagagagggtgagtgagagttatgctagtgtatgggaagaacaccttaaggaagctgggtatgggagatacagttggagaaggccattcatcacacatttcacagggtgtcagccatgtagtggagatcataatcagatgtattctggtgaaacttgttttgatgctatgcagaaagctttgaattttgctgataatcaggtgttgagaaagtatgggtatatgcataaggatgtgcttgattcttcctctgtttttcctgttccttttaactttcctgcctaatacttccgttcttttaagttctctccatacacatgtatgtacctattttgtagtagtttgctttcgttttacttcgtatttttatggtgcaatgttgtaagccagttgcaatatgcagtttaacttatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="75267" stop="76632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75562" g_stop="76332" g_length="771"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="770" r_length="770" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E711413" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75562" e_stop="76332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAACAAAGCTGGACAAGCATCAATGCCGGAGTTTTCTTGATTCGGAACTGTCAATGGTCCATGGACTTAATGGAAACTTGGGCGAAAATGGGGCCACAGTCACCGGAATACGACAAGTGGGGTGAAATCTTACATACAACTTTCAAAGACAAGATATTCCAGGAATCGGATGACCAATCCGGTCTAGCATATCTACTTTTGAAGGAAAAGGAAAAATGGGGTAACAAAATATACGTAGAAGGGGGATATTACTTCGAGGGGTATTGGGTGGAAATCGTGGGAACGTACGATAACATCACCGACAGGTATTTAGCAATAGAGAAAAGTGAAGGGAGGCTAAGAAGAAGACACGCAGAGAGGGTGAGTGAGAGTTATGCTAGTGTATGGGAAGAACACCTTAAGGAAGCTGGGTATGGGAGATACAGTTGGAGAAGGCCATTCATCACACATTTCACAGGGTGTCAGCCATGTAGTGGAGATCATAATCAGATGTATTCTGGTGAAACTTGTTTTGATGCTATGCAGAAAGCTTTGAATTTTGCTGATAATCAGGTGTTGAGAAAGTATGGGTATATGCATAAGGATCTGCTTGATTCTTCCTCTGTTTTTCCTGTTCCTTTTAACTTTCCTGCCTAATACTTCCGTTCTTTTAAGTTCTATGTATACACATGTATGTACCTATTTTGTAGTAGTTTGCTTTCGTTTTACTTCGTATTTTTATGGTGCAATGTTGTAAGCTAGTTGTAATATGGAGTTTAACTTATATAT</genome_strand>
        <mrna_strand>CAG-TACAAAGCTGGACAAGCATCAATGCCGGAGTTTTCTTGATTCGGAACTGTCAATGGTCCATGGACTTAATGGAAACTTGGGCGAAAATGGGGCCACAGTCACCGGAATACGACAAGTGGGGTGAAATCTTACATACAACTTTCAAAGACAAGATATTCCAGGAATCGGATGACCAATCCGGTCTAGCATATCTACTTTTGAAGGAAAAGGAAAAATGGGGTAACAAAATATACGTAGAAGGGGGATATTACTTCGAGGGGTATTGGGTGGAAATCGTGGGAACGTACGATAACATCACCGACAGGTATTTAGCAATAGAGAAAAGTGAAGGGAGGCTAAGAAGAAGACACGCAGAGAGGGTGAGTGAGAGTTATGCTAGTGTATGGGAAGAACACCTTAAGGAAGCTGGGTATGGGAGATACAGTTGGAGAAGGCCATTCATCACACATTTCACAGGGTGTCAGCCATGTAGTGGAGATCATAATCAGATGTATTCTGGTGAAACTTGTTTTGATGCTATGCAGAAAGCTTTGAATTTTGCTGATAATCAGGTGTTGAGAAAGTATGGGTATATGCATAAGGATGTGCTTGATTCTTCCTCTGTTTTTCCTGTTCCTTTTAACTTTCCTGCCTAATACTTCCGTTCTTTTAAGTTCTCTCCATACACATGTATGTACCTATTTTGTAGTAGTTTGCTTTCGTTTTACTTCGTATTTTTATGGTGCAATGTTGTAAGCCAGTTGCAATATGCAGTTTAACTTATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322350" ref_strand="+" ref_description="SGN-E322350 [cTOB-24-B15]">
      <seq>ttgggcgaaaatggggccacagtcaccggaatacgacaagtggggtgaaatcttacatacaactttcaaagacaagatattccaggaatcggatgaccaatccggtctagcatatctacttttgaaggaaaaggaaaaatggggtaacaaaatatacgtagaagggggatattacttcgaggggtattgggtggaaatcgtgggaacgtacgataacatcaccgacaggtatttagcaatagagaaaagtgaagggaggctaagaagaagacacgcagagagggtgagtgagagttatgctagtgtatgggaagaacaccttaaggaagctgggtatgggagatacagttggagaaggccattcatcacacatttcacagggtgtcagccatgtagtggagatcataatcagatgtattctggtgaaacttgttttgatgctatgcagaaagctttgaattttgctgataatcaggtgttgagaaagtatgggtatatgcataaggatctgcttgattcttcctctgtttttcctgttccttttaactttcctgcctaatacttccgttcttttaagttctatgtatacacatgtatgtacctattttgtagtagtttgctttcgttttacttcgtatttttatggtgcaatgttgtaagctangtgtaatatggagtttaacttatatatagtcaccacttgaagaaattatactattcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="75342" stop="76667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75642" g_stop="76371" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E322350" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75642" e_stop="76371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGCGAAAATGGGGCCACAGTCACCGGAATACGACAAGTGGGGTGAAATCTTACATACAACTTTCAAAGACAAGATATTCCAGGAATCGGATGACCAATCCGGTCTAGCATATCTACTTTTGAAGGAAAAGGAAAAATGGGGTAACAAAATATACGTAGAAGGGGGATATTACTTCGAGGGGTATTGGGTGGAAATCGTGGGAACGTACGATAACATCACCGACAGGTATTTAGCAATAGAGAAAAGTGAAGGGAGGCTAAGAAGAAGACACGCAGAGAGGGTGAGTGAGAGTTATGCTAGTGTATGGGAAGAACACCTTAAGGAAGCTGGGTATGGGAGATACAGTTGGAGAAGGCCATTCATCACACATTTCACAGGGTGTCAGCCATGTAGTGGAGATCATAATCAGATGTATTCTGGTGAAACTTGTTTTGATGCTATGCAGAAAGCTTTGAATTTTGCTGATAATCAGGTGTTGAGAAAGTATGGGTATATGCATAAGGATCTGCTTGATTCTTCCTCTGTTTTTCCTGTTCCTTTTAACTTTCCTGCCTAATACTTCCGTTCTTTTAAGTTCTATGTATACACATGTATGTACCTATTTTGTAGTAGTTTGCTTTCGTTTTACTTCGTATTTTTATGGTGCAATGTTGTAAGCTAGTTGTAATATGGAGTTTAACTTATATATAGTCACCACTTGAAGAAATTTATACTATTCAAACAGTGT</genome_strand>
        <mrna_strand>TTGGGCGAAAATGGGGCCACAGTCACCGGAATACGACAAGTGGGGTGAAATCTTACATACAACTTTCAAAGACAAGATATTCCAGGAATCGGATGACCAATCCGGTCTAGCATATCTACTTTTGAAGGAAAAGGAAAAATGGGGTAACAAAATATACGTAGAAGGGGGATATTACTTCGAGGGGTATTGGGTGGAAATCGTGGGAACGTACGATAACATCACCGACAGGTATTTAGCAATAGAGAAAAGTGAAGGGAGGCTAAGAAGAAGACACGCAGAGAGGGTGAGTGAGAGTTATGCTAGTGTATGGGAAGAACACCTTAAGGAAGCTGGGTATGGGAGATACAGTTGGAGAAGGCCATTCATCACACATTTCACAGGGTGTCAGCCATGTAGTGGAGATCATAATCAGATGTATTCTGGTGAAACTTGTTTTGATGCTATGCAGAAAGCTTTGAATTTTGCTGATAATCAGGTGTTGAGAAAGTATGGGTATATGCATAAGGATCTGCTTGATTCTTCCTCTGTTTTTCCTGTTCCTTTTAACTTTCCTGCCTAATACTTCCGTTCTTTTAAGTTCTATGTATACACATGTATGTACCTATTTTGTAGTAGTTTGCTTTCGTTTTACTTCGTATTTTTATGGTGCAATGTTGTAAGCTANGTGTAATATGGAGTTTAACTTATATATAGTCACCACTTGAAGAAA-TTATACTATTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E320100" ref_strand="+" ref_description="SGN-E320100 [cTOB-21-O16]">
      <seq>ttgggcgaaaatggggccacagtcaccggaatacgacaagtggggtgaaatcttacatacaactttcaaagacaagatattccaggaatcggatgaccaatccggtctagcatatctacttttgaaggaaaaggaaaaatggggtaacaaaatatacgtagaagggggatattacttcgaggggtattgggtggaaatcgtgggaacgtacgataacatcaccgacaggtatttagcaatagagaaaagtgaagggaggctaagaagaagacacgcagagagggtgagtgagagttatgctagtgtatgggaagaacaccttaaggaagctgggtatgggagatacagttggagaaggccattcatcacacatttcacagggtgtcagccatgtagtggagatcataatcagatgtattctggtgaaacttgttttgatgctatgcagaaagctttgaattttgctgataatcaggtgttgagaaagtatgggtatatgcataaggatctgcttgattcttcctctgtttttcctgttccttttaactttcctgcctaatacttccgttcttttaaagtctatgtatacacatgtatgtaccctattttgtagtagtttgctttcgttttacttcgtatttttatgtgcaatgttgtaagctangtgtaatatggaggttaacttatatatagtcaccactttgagaatttatactattcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="75342" stop="76667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75642" g_stop="76367" g_length="726"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="725" r_length="725" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E320100" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75642" e_stop="76367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGCGAAAATGGGGCCACAGTCACCGGAATACGACAAGTGGGGTGAAATCTTACATACAACTTTCAAAGACAAGATATTCCAGGAATCGGATGACCAATCCGGTCTAGCATATCTACTTTTGAAGGAAAAGGAAAAATGGGGTAACAAAATATACGTAGAAGGGGGATATTACTTCGAGGGGTATTGGGTGGAAATCGTGGGAACGTACGATAACATCACCGACAGGTATTTAGCAATAGAGAAAAGTGAAGGGAGGCTAAGAAGAAGACACGCAGAGAGGGTGAGTGAGAGTTATGCTAGTGTATGGGAAGAACACCTTAAGGAAGCTGGGTATGGGAGATACAGTTGGAGAAGGCCATTCATCACACATTTCACAGGGTGTCAGCCATGTAGTGGAGATCATAATCAGATGTATTCTGGTGAAACTTGTTTTGATGCTATGCAGAAAGCTTTGAATTTTGCTGATAATCAGGTGTTGAGAAAGTATGGGTATATGCATAAGGATCTGCTTGATTCTTCCTCTGTTTTTCCTGTTCCTTTTAACTTTCCTGCCTAATACTTCCGTTCTTTTAAGTTCTATGTATACACATGTATGTA-CCTATTTTGTAGTAGTTTGCTTTCGTTTTACTTCGTATTTTTATGGTGCAATGTTGTAAGCTAGTTGTAATATGGAGTTTAACTTATATATAGTCACCACTTGAAGAAATTTATACTATTCAAACA</genome_strand>
        <mrna_strand>TTGGGCGAAAATGGGGCCACAGTCACCGGAATACGACAAGTGGGGTGAAATCTTACATACAACTTTCAAAGACAAGATATTCCAGGAATCGGATGACCAATCCGGTCTAGCATATCTACTTTTGAAGGAAAAGGAAAAATGGGGTAACAAAATATACGTAGAAGGGGGATATTACTTCGAGGGGTATTGGGTGGAAATCGTGGGAACGTACGATAACATCACCGACAGGTATTTAGCAATAGAGAAAAGTGAAGGGAGGCTAAGAAGAAGACACGCAGAGAGGGTGAGTGAGAGTTATGCTAGTGTATGGGAAGAACACCTTAAGGAAGCTGGGTATGGGAGATACAGTTGGAGAAGGCCATTCATCACACATTTCACAGGGTGTCAGCCATGTAGTGGAGATCATAATCAGATGTATTCTGGTGAAACTTGTTTTGATGCTATGCAGAAAGCTTTGAATTTTGCTGATAATCAGGTGTTGAGAAAGTATGGGTATATGCATAAGGATCTGCTTGATTCTTCCTCTGTTTTTCCTGTTCCTTTTAACTTTCCTGCCTAATACTTCCGTTCTTTTAAAGTCTATGTATACACATGTATGTACCCTATTTTGTAGTAGTTTGCTTTCGTTTTACTTCGTATTTTTAT-GTGCAATGTTGTAAGCTANGTGTAATATGGAGGTTAACTTATATATAGTCACCACTTTGAG-AATTTATACTATTCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322383" ref_strand="+" ref_description="SGN-E322383 [cTOB-24-B22]">
      <seq>ttgggcgaaaatggggccacagtcaccggaatacgacaagtggggtgaaatcttacatacaactttcaaagacaagatattccaggaatcggatgaccaatccggtctagcatatctacttttgaaggaaaaggaaaaatggggtaacaaaatatacgtagaagggggatattacttcgaggggtattgggtggaaatcgtgggaacgtacgataacatcaccgacaggtatttagcaatagagaaaagtgaagggaggctaagaagaagacacgcagagagggtgagtgagagttatgctagtgtatgggaagaacaccttaaggaagctgggtatgggagatacagttggagaaggccattcatcacacatttcacagggtgtcagccatgtagtggagatcataatcagatgtattctggtgaaacttgttttgatgctatgcagaaagctttgaattttgctgataatcaggtgttgagaaagtatgggtatatgcataaggatctgcttgattcttcctctgtttttcctgttccttttaactttcctgcctaatacttccgttcttttaagttctatgtatacacatgtatgtacctattttgtagtagtttgctttcgttttacttcgtatttttatggtgcaatgttgtaagctagttgtaatatggagtttaacttatatatagtcaccacttgaaagaaattatactattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="75342" stop="76662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75642" g_stop="76362" g_length="721"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="721" r_length="721" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E322383" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75642" e_stop="76362"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGCGAAAATGGGGCCACAGTCACCGGAATACGACAAGTGGGGTGAAATCTTACATACAACTTTCAAAGACAAGATATTCCAGGAATCGGATGACCAATCCGGTCTAGCATATCTACTTTTGAAGGAAAAGGAAAAATGGGGTAACAAAATATACGTAGAAGGGGGATATTACTTCGAGGGGTATTGGGTGGAAATCGTGGGAACGTACGATAACATCACCGACAGGTATTTAGCAATAGAGAAAAGTGAAGGGAGGCTAAGAAGAAGACACGCAGAGAGGGTGAGTGAGAGTTATGCTAGTGTATGGGAAGAACACCTTAAGGAAGCTGGGTATGGGAGATACAGTTGGAGAAGGCCATTCATCACACATTTCACAGGGTGTCAGCCATGTAGTGGAGATCATAATCAGATGTATTCTGGTGAAACTTGTTTTGATGCTATGCAGAAAGCTTTGAATTTTGCTGATAATCAGGTGTTGAGAAAGTATGGGTATATGCATAAGGATCTGCTTGATTCTTCCTCTGTTTTTCCTGTTCCTTTTAACTTTCCTGCCTAATACTTCCGTTCTTTTAAGTTCTATGTATACACATGTATGTACCTATTTTGTAGTAGTTTGCTTTCGTTTTACTTCGTATTTTTATGGTGCAATGTTGTAAGCTAGTTGTAATATGGAGTTTAACTTATATATAGTCACCACTTGAAGAAATTTATACTATTC</genome_strand>
        <mrna_strand>TTGGGCGAAAATGGGGCCACAGTCACCGGAATACGACAAGTGGGGTGAAATCTTACATACAACTTTCAAAGACAAGATATTCCAGGAATCGGATGACCAATCCGGTCTAGCATATCTACTTTTGAAGGAAAAGGAAAAATGGGGTAACAAAATATACGTAGAAGGGGGATATTACTTCGAGGGGTATTGGGTGGAAATCGTGGGAACGTACGATAACATCACCGACAGGTATTTAGCAATAGAGAAAAGTGAAGGGAGGCTAAGAAGAAGACACGCAGAGAGGGTGAGTGAGAGTTATGCTAGTGTATGGGAAGAACACCTTAAGGAAGCTGGGTATGGGAGATACAGTTGGAGAAGGCCATTCATCACACATTTCACAGGGTGTCAGCCATGTAGTGGAGATCATAATCAGATGTATTCTGGTGAAACTTGTTTTGATGCTATGCAGAAAGCTTTGAATTTTGCTGATAATCAGGTGTTGAGAAAGTATGGGTATATGCATAAGGATCTGCTTGATTCTTCCTCTGTTTTTCCTGTTCCTTTTAACTTTCCTGCCTAATACTTCCGTTCTTTTAAGTTCTATGTATACACATGTATGTACCTATTTTGTAGTAGTTTGCTTTCGTTTTACTTCGTATTTTTATGGTGCAATGTTGTAAGCTAGTTGTAATATGGAGTTTAACTTATATATAGTCACCACTTGAAAGAAATTATACTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322311" ref_strand="+" ref_description="SGN-E322311 [cTOB-24-A12]">
      <seq>ttgggcgaaaatggggccacagtcaccggaatacgacaagtggggtgaaatcttacatacaactttcaaagacaagatattccaggaatcggatgaccaatccggtctagcatatctacttttgaaggaaaaggaaaaatggggtaacaaaatatacgtagaagggggatattacttcgaggggtattgggtggaaatcgtgggaacgtacgataacatcaccgacaggtatttagcaatagagaaaagtgaagggaggctaagaagaagacacgcagagagggtgagtgagagttatgctagtgtatgggaagaacaccttaaggaagctgggtatgggagatacagttggagaaggccattcatcacacatttcacagggtgtcagccatgtagtggagatcataatcagatgtattctggtgaaacttgttttgatgctatgcagaaagctttgaattttgctgataatcaggtgttgagaaagtatgggtatatgcataaggatctgcttgattcttcctctggttttcctgttccttttaactttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="75342" stop="76494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75642" g_stop="76194" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E322311" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75642" e_stop="76194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGCGAAAATGGGGCCACAGTCACCGGAATACGACAAGTGGGGTGAAATCTTACATACAACTTTCAAAGACAAGATATTCCAGGAATCGGATGACCAATCCGGTCTAGCATATCTACTTTTGAAGGAAAAGGAAAAATGGGGTAACAAAATATACGTAGAAGGGGGATATTACTTCGAGGGGTATTGGGTGGAAATCGTGGGAACGTACGATAACATCACCGACAGGTATTTAGCAATAGAGAAAAGTGAAGGGAGGCTAAGAAGAAGACACGCAGAGAGGGTGAGTGAGAGTTATGCTAGTGTATGGGAAGAACACCTTAAGGAAGCTGGGTATGGGAGATACAGTTGGAGAAGGCCATTCATCACACATTTCACAGGGTGTCAGCCATGTAGTGGAGATCATAATCAGATGTATTCTGGTGAAACTTGTTTTGATGCTATGCAGAAAGCTTTGAATTTTGCTGATAATCAGGTGTTGAGAAAGTATGGGTATATGCATAAGGATCTGCTTGATTCTTCCTCTGTTTTTCCTGTTCCTTTTAACTTTCCT</genome_strand>
        <mrna_strand>TTGGGCGAAAATGGGGCCACAGTCACCGGAATACGACAAGTGGGGTGAAATCTTACATACAACTTTCAAAGACAAGATATTCCAGGAATCGGATGACCAATCCGGTCTAGCATATCTACTTTTGAAGGAAAAGGAAAAATGGGGTAACAAAATATACGTAGAAGGGGGATATTACTTCGAGGGGTATTGGGTGGAAATCGTGGGAACGTACGATAACATCACCGACAGGTATTTAGCAATAGAGAAAAGTGAAGGGAGGCTAAGAAGAAGACACGCAGAGAGGGTGAGTGAGAGTTATGCTAGTGTATGGGAAGAACACCTTAAGGAAGCTGGGTATGGGAGATACAGTTGGAGAAGGCCATTCATCACACATTTCACAGGGTGTCAGCCATGTAGTGGAGATCATAATCAGATGTATTCTGGTGAAACTTGTTTTGATGCTATGCAGAAAGCTTTGAATTTTGCTGATAATCAGGTGTTGAGAAAGTATGGGTATATGCATAAGGATCTGCTTGATTCTTCCTCTGGTTTTCCTGTTCCTTTTAACTTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322226" ref_strand="+" ref_description="SGN-E322226 [cTOB-24-B12]">
      <seq>ttgggcgaaaatggggccacagtcaccggaatacgacaagtggggtgaaatcttacatacaactttcaaagacaagatattccaggaatcggatgaccaatccggtctagcatatctacttttgaaggaaaaggaaaaatggggtaacaaaatatacgtagaagggggatattacttcgaggggtattgggtggaaatcgtgggaacgtacgataacatcaccgacaggtatttagcaatagagaaaagtgaagggaggctaagaagaagacacgcagagagggtgagtgagagttatgctagtgtatgggaagaacaccttaaggaagctgggtatgggagatacagttggagaaggccattcatcacacatttcacagggtgtcagccatgtagtggagatcataatcagatgtattctggtgaaacttgttttgatgctatgcagaaagctttgaattttgctgataatcaggtggtgagaaagtatgggtatatgcataaggatctgcttgattcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="75342" stop="76463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75642" g_stop="76163" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E322226" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75642" e_stop="76163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGCGAAAATGGGGCCACAGTCACCGGAATACGACAAGTGGGGTGAAATCTTACATACAACTTTCAAAGACAAGATATTCCAGGAATCGGATGACCAATCCGGTCTAGCATATCTACTTTTGAAGGAAAAGGAAAAATGGGGTAACAAAATATACGTAGAAGGGGGATATTACTTCGAGGGGTATTGGGTGGAAATCGTGGGAACGTACGATAACATCACCGACAGGTATTTAGCAATAGAGAAAAGTGAAGGGAGGCTAAGAAGAAGACACGCAGAGAGGGTGAGTGAGAGTTATGCTAGTGTATGGGAAGAACACCTTAAGGAAGCTGGGTATGGGAGATACAGTTGGAGAAGGCCATTCATCACACATTTCACAGGGTGTCAGCCATGTAGTGGAGATCATAATCAGATGTATTCTGGTGAAACTTGTTTTGATGCTATGCAGAAAGCTTTGAATTTTGCTGATAATCAGGTGTTGAGAAAGTATGGGTATATGCATAAGGATCTGCTTGATTCTTC</genome_strand>
        <mrna_strand>TTGGGCGAAAATGGGGCCACAGTCACCGGAATACGACAAGTGGGGTGAAATCTTACATACAACTTTCAAAGACAAGATATTCCAGGAATCGGATGACCAATCCGGTCTAGCATATCTACTTTTGAAGGAAAAGGAAAAATGGGGTAACAAAATATACGTAGAAGGGGGATATTACTTCGAGGGGTATTGGGTGGAAATCGTGGGAACGTACGATAACATCACCGACAGGTATTTAGCAATAGAGAAAAGTGAAGGGAGGCTAAGAAGAAGACACGCAGAGAGGGTGAGTGAGAGTTATGCTAGTGTATGGGAAGAACACCTTAAGGAAGCTGGGTATGGGAGATACAGTTGGAGAAGGCCATTCATCACACATTTCACAGGGTGTCAGCCATGTAGTGGAGATCATAATCAGATGTATTCTGGTGAAACTTGTTTTGATGCTATGCAGAAAGCTTTGAATTTTGCTGATAATCAGGTGGTGAGAAAGTATGGGTATATGCATAAGGATCTGCTTGATTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203195" ref_strand="+" ref_description="SGN-E203195 [cLEB-3-J24](-)">
      <seq>agagaaaagtgaagggaggctaagaagaagacacgcagagagggtgagtgagagttatgctagtgtatgggaagaacaccttaaggaagctgggtatgggagatacagttggagaaggccattcatcacacatttcacagggtgtcagccatgtagtggagatcataatcagatgtattctggtgaaacttgttttgatgctatgcagaaagctttgaattttgctgataatcaggtgttgagaaagtatgggtatatgcataaggatctgcttgattcttcctctgtttttcctgttccttttaactttcctgcctaatacttccgttcttttaagttctatgtatacacatgtatgtacctattttgtagtagtttgctttcgttttacttcgtatttttatggtgcaatgttgtaagctagttgtaatatggagtttaacttatatatagtcaccacttgaagaaatttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="75582" stop="76656"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75882" g_stop="76353" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="473" polyA_stop="489"/>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E203195" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75882" e_stop="76353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAAAGTGAAGGGAGGCTAAGAAGAAGACACGCAGAGAGGGTGAGTGAGAGTTATGCTAGTGTATGGGAAGAACACCTTAAGGAAGCTGGGTATGGGAGATACAGTTGGAGAAGGCCATTCATCACACATTTCACAGGGTGTCAGCCATGTAGTGGAGATCATAATCAGATGTATTCTGGTGAAACTTGTTTTGATGCTATGCAGAAAGCTTTGAATTTTGCTGATAATCAGGTGTTGAGAAAGTATGGGTATATGCATAAGGATCTGCTTGATTCTTCCTCTGTTTTTCCTGTTCCTTTTAACTTTCCTGCCTAATACTTCCGTTCTTTTAAGTTCTATGTATACACATGTATGTACCTATTTTGTAGTAGTTTGCTTTCGTTTTACTTCGTATTTTTATGGTGCAATGTTGTAAGCTAGTTGTAATATGGAGTTTAACTTATATATAGTCACCACTTGAAGAAATTT</genome_strand>
        <mrna_strand>AGAGAAAAGTGAAGGGAGGCTAAGAAGAAGACACGCAGAGAGGGTGAGTGAGAGTTATGCTAGTGTATGGGAAGAACACCTTAAGGAAGCTGGGTATGGGAGATACAGTTGGAGAAGGCCATTCATCACACATTTCACAGGGTGTCAGCCATGTAGTGGAGATCATAATCAGATGTATTCTGGTGAAACTTGTTTTGATGCTATGCAGAAAGCTTTGAATTTTGCTGATAATCAGGTGTTGAGAAAGTATGGGTATATGCATAAGGATCTGCTTGATTCTTCCTCTGTTTTTCCTGTTCCTTTTAACTTTCCTGCCTAATACTTCCGTTCTTTTAAGTTCTATGTATACACATGTATGTACCTATTTTGTAGTAGTTTGCTTTCGTTTTACTTCGTATTTTTATGGTGCAATGTTGTAAGCTAGTTGTAATATGGAGTTTAACTTATATATAGTCACCACTTGAAGAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E226089" ref_strand="+" ref_description="SGN-E226089 [cLEL-31-A5](-)">
      <seq>gttatgctagtgtatgggaagaccaccttaagaagctgggtatgggagatacagttggagaaggccattcatcacacatttcacagggtgtcagccatgtagtggagatcataatcagatgtattctggtgaaacttgttttgatgctatgcagaaagctttgaattttgctgataatcaggtgttgagaaagtatgggtatatgcataaggatctgcttgattcttcctctgtttttcctgttccttttaactttcctgcctaatacttccgttcttttaagttctatgtatacacatgtatgtacctattttgtagtagtttgctttcgttttacttcgtatttttatggtgcaatgttgtaagctagttgtaatatggagtttaacttatatatagtcaccacttgaagaaatttatactaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="75635" stop="76659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75935" g_stop="76358" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="424" polyA_stop="440"/>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E226089" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75935" e_stop="76358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATGCTAGTGTATGGGAAGAACACCTTAAGGAAGCTGGGTATGGGAGATACAGTTGGAGAAGGCCATTCATCACACATTTCACAGGGTGTCAGCCATGTAGTGGAGATCATAATCAGATGTATTCTGGTGAAACTTGTTTTGATGCTATGCAGAAAGCTTTGAATTTTGCTGATAATCAGGTGTTGAGAAAGTATGGGTATATGCATAAGGATCTGCTTGATTCTTCCTCTGTTTTTCCTGTTCCTTTTAACTTTCCTGCCTAATACTTCCGTTCTTTTAAGTTCTATGTATACACATGTATGTACCTATTTTGTAGTAGTTTGCTTTCGTTTTACTTCGTATTTTTATGGTGCAATGTTGTAAGCTAGTTGTAATATGGAGTTTAACTTATATATAGTCACCACTTGAAGAAATTTATACT</genome_strand>
        <mrna_strand>GTTATGCTAGTGTATGGGAAGACCACCTTAA-GAAGCTGGGTATGGGAGATACAGTTGGAGAAGGCCATTCATCACACATTTCACAGGGTGTCAGCCATGTAGTGGAGATCATAATCAGATGTATTCTGGTGAAACTTGTTTTGATGCTATGCAGAAAGCTTTGAATTTTGCTGATAATCAGGTGTTGAGAAAGTATGGGTATATGCATAAGGATCTGCTTGATTCTTCCTCTGTTTTTCCTGTTCCTTTTAACTTTCCTGCCTAATACTTCCGTTCTTTTAAGTTCTATGTATACACATGTATGTACCTATTTTGTAGTAGTTTGCTTTCGTTTTACTTCGTATTTTTATGGTGCAATGTTGTAAGCTAGTTGTAATATGGAGTTTAACTTATATATAGTCACCACTTGAAGAAATTTATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E229477" ref_strand="+" ref_description="SGN-E229477 [cLEL-4-H4](-)">
      <seq>aaggccattcatcacacatttcacagggtgtcagccatgtagtggagatcataatcagatgtattctggtgaaacttgttttgatgctatgcagaaagctttgaattttgctgataatcaggtgttgagaaagtatgggtatatgcataaggatctgcttgattcttcctctgtttttcctgttccttttaactttcctgcctaatacttccgttcttttaagttctatgtatacacatgtatgtacctattttgtagtagtttgctttcgttttacttcgtatttttatggtgcaatgttgtaagctagttgtaatatggagtttaacttatatatagtcaccacttgaagaaatttatactaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="75696" stop="76659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75996" g_stop="76358" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="364" polyA_stop="380"/>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E229477" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75996" e_stop="76358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCCATTCATCACACATTTCACAGGGTGTCAGCCATGTAGTGGAGATCATAATCAGATGTATTCTGGTGAAACTTGTTTTGATGCTATGCAGAAAGCTTTGAATTTTGCTGATAATCAGGTGTTGAGAAAGTATGGGTATATGCATAAGGATCTGCTTGATTCTTCCTCTGTTTTTCCTGTTCCTTTTAACTTTCCTGCCTAATACTTCCGTTCTTTTAAGTTCTATGTATACACATGTATGTACCTATTTTGTAGTAGTTTGCTTTCGTTTTACTTCGTATTTTTATGGTGCAATGTTGTAAGCTAGTTGTAATATGGAGTTTAACTTATATATAGTCACCACTTGAAGAAATTTATACT</genome_strand>
        <mrna_strand>AAGGCCATTCATCACACATTTCACAGGGTGTCAGCCATGTAGTGGAGATCATAATCAGATGTATTCTGGTGAAACTTGTTTTGATGCTATGCAGAAAGCTTTGAATTTTGCTGATAATCAGGTGTTGAGAAAGTATGGGTATATGCATAAGGATCTGCTTGATTCTTCCTCTGTTTTTCCTGTTCCTTTTAACTTTCCTGCCTAATACTTCCGTTCTTTTAAGTTCTATGTATACACATGTATGTACCTATTTTGTAGTAGTTTGCTTTCGTTTTACTTCGTATTTTTATGGTGCAATGTTGTAAGCTAGTTGTAATATGGAGTTTAACTTATATATAGTCACCACTTGAAGAAATTTATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E225993" ref_strand="+" ref_description="SGN-E225993 [cLEL-31-A5](-)">
      <seq>ccattcatcacacatttcacagggtgtcagccatgtagtggagatcataatcagatgtattctggtgaaacttgttttgatgctatgcagaaagctttgaattttgctgataatcaggtgttgagaaagtatgggtatatgcataaggatctgcttgattcttcctctgtttttcctgttccttttaactttcctgcctaatacttccgttcttttaagttctatgtatacacatgtatgtacctattttgtagtagtttgctttcgttttacttcgtatttttatggtgcaatgttgtaagctagttgtaatatggagtttaacttatatatagtcaccacttgaagaaatttatactaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="75700" stop="76659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76000" g_stop="76358" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="360" polyA_stop="376"/>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E225993" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76000" e_stop="76358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTCATCACACATTTCACAGGGTGTCAGCCATGTAGTGGAGATCATAATCAGATGTATTCTGGTGAAACTTGTTTTGATGCTATGCAGAAAGCTTTGAATTTTGCTGATAATCAGGTGTTGAGAAAGTATGGGTATATGCATAAGGATCTGCTTGATTCTTCCTCTGTTTTTCCTGTTCCTTTTAACTTTCCTGCCTAATACTTCCGTTCTTTTAAGTTCTATGTATACACATGTATGTACCTATTTTGTAGTAGTTTGCTTTCGTTTTACTTCGTATTTTTATGGTGCAATGTTGTAAGCTAGTTGTAATATGGAGTTTAACTTATATATAGTCACCACTTGAAGAAATTTATACT</genome_strand>
        <mrna_strand>CCATTCATCACACATTTCACAGGGTGTCAGCCATGTAGTGGAGATCATAATCAGATGTATTCTGGTGAAACTTGTTTTGATGCTATGCAGAAAGCTTTGAATTTTGCTGATAATCAGGTGTTGAGAAAGTATGGGTATATGCATAAGGATCTGCTTGATTCTTCCTCTGTTTTTCCTGTTCCTTTTAACTTTCCTGCCTAATACTTCCGTTCTTTTAAGTTCTATGTATACACATGTATGTACCTATTTTGTAGTAGTTTGCTTTCGTTTTACTTCGTATTTTTATGGTGCAATGTTGTAAGCTAGTTGTAATATGGAGTTTAACTTATATATAGTCACCACTTGAAGAAATTTATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E229601" ref_strand="+" ref_description="SGN-E229601 [cLEL-4-H4](-)">
      <seq>cacaggggtgtcagccatgtagtggagatcattaatcagatgtattctggtgaaacttgttttgatgctatgcagaaagctttgaattttgctgataatcaggtgttgagaaagtatgggtatatgcataaggatctgcttgattcttcctctgtttttcctgttccttttaactttcctgcctaatacttccgttcttttaagttctatgtatacacatgtatgtacctattttgtagtagtttgctttcgttttacttcgtatttttatggtgcaatgttgtaagctagttgtaatatggagtttaacttatatatagtcaccacttgaagaaatttatactaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="75717" stop="76659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76017" g_stop="76358" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="345" polyA_stop="361"/>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E229601" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76017" e_stop="76358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGGG-TGTCAGCCATGTAGTGGAGATCA-TAATCAGATGTATTCTGGTGAAACTTGTTTTGATGCTATGCAGAAAGCTTTGAATTTTGCTGATAATCAGGTGTTGAGAAAGTATGGGTATATGCATAAGGATCTGCTTGATTCTTCCTCTGTTTTTCCTGTTCCTTTTAACTTTCCTGCCTAATACTTCCGTTCTTTTAAGTTCTATGTATACACATGTATGTACCTATTTTGTAGTAGTTTGCTTTCGTTTTACTTCGTATTTTTATGGTGCAATGTTGTAAGCTAGTTGTAATATGGAGTTTAACTTATATATAGTCACCACTTGAAGAAATTTATACT</genome_strand>
        <mrna_strand>CACAGGGGTGTCAGCCATGTAGTGGAGATCATTAATCAGATGTATTCTGGTGAAACTTGTTTTGATGCTATGCAGAAAGCTTTGAATTTTGCTGATAATCAGGTGTTGAGAAAGTATGGGTATATGCATAAGGATCTGCTTGATTCTTCCTCTGTTTTTCCTGTTCCTTTTAACTTTCCTGCCTAATACTTCCGTTCTTTTAAGTTCTATGTATACACATGTATGTACCTATTTTGTAGTAGTTTGCTTTCGTTTTACTTCGTATTTTTATGGTGCAATGTTGTAAGCTAGTTGTAATATGGAGTTTAACTTATATATAGTCACCACTTGAAGAAATTTATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E222197" ref_strand="-" ref_description="SGN-E222197 [cLEL-16-H20](-)">
      <seq>tttttttttttttttttttaaaaaaaacactgtttgaatagtataaatttcttcaagtggtgactatatataagttaaactccatattacaactagcttacaacattgcaccataaaaatacgaagtaaaacgaaagcaaactactacaaaataggtacatacatgtgtatacatagaacttaaaagaacggaagtattaggcaggaaagttaaaaggaacaggaacaacagaggaagaatcaagcagatccttatgcatatacccatactgtctgaacacctgattatcagcaaaattcaaagctttctgcatagcatcaaaacaagtttcaccagaatacatctgattatgatctccactacatggctgacaccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="99666" stop="75719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77010" g_stop="76983" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.821"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76982" i_stop="76370" i_length="613">
            <donor d_prob="0.760" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76369" g_stop="76019" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="379" r_length="351" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E222197" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E222197" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="77010" e_stop="76983"/>
          <exon e_start="76369" e_stop="76019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTTTGTTTTTTATTTAAAAAAAACGTAAGATGAATACATCATTAAGTCAAAAAAATAAAAAAATATAACAATTGTGTCAATTTCAGCAGGACTCAGCTCTACCACGAAAAGGAGTGTTGTGAAACTAAGCATTTCCAAATTCAAATTAGTCGTATTCCAATGTTTGGAATCAAACAGAAAAACGGAAAAAAGAAGAAATTCTAATCGTGAACTCTTCAATCACGATGTGTTGATTTCTTGAACATATCCATGTTACAAAACACAGTACTTCTAATTAATTCTAAATAGAAAAAGACATGTGAAAATGTCCTTTTATCAATACAAGTTGCTTTCAACCCTTGCATTTTTGTCCTCCATGAAATTACACTCACATGTGCAGCTACTTCTCTTTTATAGTTCTTGTGTAAAACGAAAAGTGAAAATGGTACGAAATTCAATTATTTCTATCATTTAAAGCTGATATATCAAACGTTTATTATTTCTATCATTTAAAGCTGATATATCAAACGTTATAAATCGTTTGTACAACGATAAGAATATATATAAGTCACTTTGAGGATATCAACTCCAAATAACAAGGGCTTTTTTCAAATAGAAATAATCTTCTATCCTAACAATATGAAGAAGAAAAAAAAACACTGTTTGAATAGTATAAATTTCTTCAAGTGGTGACTATATATAAGTTAAACTCCATATTACAACTAGCTTACAACATTGCACCATAAAAATACGAAGTAAAACGAAAGCAAACTACTACAAAATAGGTACATACATGTGTATACATAGAACTTAAAAGAACGGAAGTATTAGGCAGGAAAGTTAAAAGGAACAGGAAAAACAGAGGAAGAATCAAGCAGATCCTTATGCATATACCCATACTTTCTCAACACCTGATTATCAGCAAAATTCAAAGCTTTCTGCATAGCATCAAAACAAGTTTCACCAGAATACATCTGATTATGATCTCCACTACATGGCTGACACCCTG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTAAAAAAAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTTTGAATAGTATAAATTTCTTCAAGTGGTGACTATATATAAGTTAAACTCCATATTACAACTAGCTTACAACATTGCACCATAAAAATACGAAGTAAAACGAAAGCAAACTACTACAAAATAGGTACATACATGTGTATACATAGAACTTAAAAGAACGGAAGTATTAGGCAGGAAAGTTAAAAGGAACAGGAACAACAGAGGAAGAATCAAGCAGATCCTTATGCATATACCCATACTGTCTGAACACCTGATTATCAGCAAAATTCAAAGCTTTCTGCATAGCATCAAAACAAGTTTCACCAGAATACATCTGATTATGATCTCCACTACATGGCTGACACCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E226090" ref_strand="+" ref_description="SGN-E226090 [cLEL-31-A7](-)">
      <seq>cataatcagatgtattctggtgaaacttgttttgatgctatgcagaaagctttgaattttgctgataatcaggtgttgagaaagtatgggtatatgcataaggatctgcttgattcttcctctgtttttcctgttccttttaactttcctgcctaatacttccgttcttttaagttctatgtatacacatgtatgtacctattttgtagtagtttgctttcgttttacttcgtatttttatggtgcaatgttgtaagctagttgtaatatggagtttaacttatatatagtcaccacttgaagaaatttatactaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="75745" stop="76659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76045" g_stop="76358" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="315" polyA_stop="331"/>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E226090" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>314</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E226090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76045" e_stop="76358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAATCAGATGTATTCTGGTGAAACTTGTTTTGATGCTATGCAGAAAGCTTTGAATTTTGCTGATAATCAGGTGTTGAGAAAGTATGGGTATATGCATAAGGATCTGCTTGATTCTTCCTCTGTTTTTCCTGTTCCTTTTAACTTTCCTGCCTAATACTTCCGTTCTTTTAAGTTCTATGTATACACATGTATGTACCTATTTTGTAGTAGTTTGCTTTCGTTTTACTTCGTATTTTTATGGTGCAATGTTGTAAGCTAGTTGTAATATGGAGTTTAACTTATATATAGTCACCACTTGAAGAAATTTATACT</genome_strand>
        <mrna_strand>CATAATCAGATGTATTCTGGTGAAACTTGTTTTGATGCTATGCAGAAAGCTTTGAATTTTGCTGATAATCAGGTGTTGAGAAAGTATGGGTATATGCATAAGGATCTGCTTGATTCTTCCTCTGTTTTTCCTGTTCCTTTTAACTTTCCTGCCTAATACTTCCGTTCTTTTAAGTTCTATGTATACACATGTATGTACCTATTTTGTAGTAGTTTGCTTTCGTTTTACTTCGTATTTTTATGGTGCAATGTTGTAAGCTAGTTGTAATATGGAGTTTAACTTATATATAGTCACCACTTGAAGAAATTTATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E225994" ref_strand="+" ref_description="SGN-E225994 [cLEL-31-A7](-)">
      <seq>aatcagatgtattctggtgaaacttgttttgatgctatgcagaaagctttgaattttgctgataatcaggtgttgagaaagtatgggtatatgcataaggatctgcttgattcttcctctgtttttcctgttccttttaactttcctgcctaatacttccgttcttttaagttctatgtatacacatgtatgtacctattttgtagtagtttgctttcgttttacttcgtatttttatggtgcaatgttgtaagctagttgtaatatggagtttaacttatatatagtcaccacttgaagaaatttatactaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="75748" stop="76659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76048" g_stop="76358" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="312" polyA_stop="328"/>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E225994" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>311</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76048" e_stop="76358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAGATGTATTCTGGTGAAACTTGTTTTGATGCTATGCAGAAAGCTTTGAATTTTGCTGATAATCAGGTGTTGAGAAAGTATGGGTATATGCATAAGGATCTGCTTGATTCTTCCTCTGTTTTTCCTGTTCCTTTTAACTTTCCTGCCTAATACTTCCGTTCTTTTAAGTTCTATGTATACACATGTATGTACCTATTTTGTAGTAGTTTGCTTTCGTTTTACTTCGTATTTTTATGGTGCAATGTTGTAAGCTAGTTGTAATATGGAGTTTAACTTATATATAGTCACCACTTGAAGAAATTTATACT</genome_strand>
        <mrna_strand>AATCAGATGTATTCTGGTGAAACTTGTTTTGATGCTATGCAGAAAGCTTTGAATTTTGCTGATAATCAGGTGTTGAGAAAGTATGGGTATATGCATAAGGATCTGCTTGATTCTTCCTCTGTTTTTCCTGTTCCTTTTAACTTTCCTGCCTAATACTTCCGTTCTTTTAAGTTCTATGTATACACATGTATGTACCTATTTTGTAGTAGTTTGCTTTCGTTTTACTTCGTATTTTTATGGTGCAATGTTGTAAGCTAGTTGTAATATGGAGTTTAACTTATATATAGTCACCACTTGAAGAAATTTATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357476" ref_strand="+" ref_description="SGN-E357476 [cTOS-23-O21]">
      <seq>cgtttatcacgcacttcacggggtgtcagccatgtagtgggtaccacgcgacggagtatgtgggtgattcatgttgggtgggaatggaacgagcgttgaactttgcggataatcaggtgctacgtaactttgggttcatgcatgatgacatcaaaagtaattcccctgtctctcccttaaatttcgattttccggctgaagacagtgaagaattcgtgtgaaagaaaaaaaacatgacctcaggtttttactgtaggattaaaaagacacaagtcctgtgaattttggatgttcttttaattcagtatcaatgtatttgatagttattgtaatagtaaacaatgttttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="81049" stop="80098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80749" g_stop="80399" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E357476" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80749" e_stop="80399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTTATCACGCACTTCACGGGGTGTCAGCCATGTAGTGGGGACCACGCGACGGAGTATGTGGGTGATTCATGTTGGGTGGGAATGGAACGAGCGTTGAACTTTGCGGATAATCAGGTGCTACGTAACTTTGGGTTCATGCATGATGACATCAAAAGTAATTCCCCTGTCTCTCCCTTAAATTTCGATTTTCCGGCTGAAGACAGTGAAGAATTCGTGTGAAAGAAAAAAAACATGACCTCAGGTTTTTACTGTAGGATTAAAAAGACACAAGTCCTGTGAATTTTGGATGTTCTTTTAATTCAGTATCAATGTATTTGATAGTTATTGTAATAGTAAACAATGTTTTTTA</genome_strand>
        <mrna_strand>CGTTTATCACGCACTTCACGGGGTGTCAGCCATGTAGTGGGTACCACGCGACGGAGTATGTGGGTGATTCATGTTGGGTGGGAATGGAACGAGCGTTGAACTTTGCGGATAATCAGGTGCTACGTAACTTTGGGTTCATGCATGATGACATCAAAAGTAATTCCCCTGTCTCTCCCTTAAATTTCGATTTTCCGGCTGAAGACAGTGAAGAATTCGTGTGAAAGAAAAAAAACATGACCTCAGGTTTTTACTGTAGGATTAAAAAGACACAAGTCCTGTGAATTTTGGATGTTCTTTTAATTCAGTATCAATGTATTTGATAGTTATTGTAATAGTAAACAATGTTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E624227" ref_strand="+" ref_description="SGN-E624227 [GI|55956975]">
      <seq>atttaaagcacacattgcattccttgtgactttgagactttctcacttctctcactcacataccatattttcagtatctttctttttcatttacacgggccatggcccataacgtgtttcgggccaaacagcaatcgtcttctccgagagacaaatctctgttcgcggcggccatagttgcggttttacttgtctgtgctatttggtcatttactgatcctttgcctaatttatcaggtttgttatatagtcagagtattagttcaccggattattgcccaccgggacgagaagcggttgaccggagttccgacccgctggagaaaacattctacgatgaaccggaactcagttacactattaacaaaccaatcaaaaattgggacgaaaagagagttcagtggctgaagcttcatccttcgttcgccgccggaagagttaaccgtgtgctcctcctctcaggatcacagcccactccatgcaaaaacgctagaggtgatcatttactcttaaggtttttcaaaaacaaagttgattactgtagaatccatggctatgatattttctacggaaacacgttttttcaccctaaaatgcgttcttattgggccaaaataccgcttgttcgggccgccatgctggctcatcctgaatccgagtggattctatggattgattcagatgcaattttcactgatatggatttcaaaattccattacacaaatacaatgactacaacttcatcgtccatggctggcctgatttgatttttaagaagaaaagctgggtcgctataaatgctgggatttttcttatccgaaactgtcaatggtctatggatttcttagatgtttgggctaatatgggcccgaaaagcccagaatacaagcaatggggcaaaatcttacggacaactttcaaggacaaaacgttcccggagtccgacgaccaatcagcactgagctatttaatactgaaaggagaacgaaaatggcggagcaaaattcacgcaatcactgattactctctacacggctactggctaggaatagtaaacagatttgacaaaataacagagaattacacgaagatagagagagatgtaccaaagttacggaggagacacgcggaggcagtcagcgacagctacgcggaggcgagggagccgttgttggcggagggcgctgacggaaagggcggatggaggcggccgtttatcacgcacttcacggggtgtcagccatgtagtggggaccacgcggcggagtatgtgggtgattcatgttgggtgggaatggaacgagcgttgaactttgcggataatcaggtgctacgtaacttcggattcatgcatgatgatatcaaaagtaattcccctgtctctccgttaaatttcgattttccagctgaagacagtgaagaattcgtgtgaaagaaaaacaaaaaaacgaataacctcatgtttttactgtaggattaaaatgaggttacttagacacaagtcctgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="82217" stop="80183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81913" g_stop="80507" g_length="1407"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="1454" r_length="1405" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E624227" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>1407</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E624227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81913" e_stop="80507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCACTCACATACCATAGTTTCAGTATCTTTCCTTTTCATTCACAACGGGCCATGGCCCATAACGTGTTTCGGGCCAAACAGCAATCGTCTTCTCCGAGAGACAAATCTCTGTTCGCGGCCGTCATAGTTGCGGTTCTACTTGTCTGTGCTATTTGGTCATTTACTGATCCTTTGCCTAATTTATCAGGTTTATTATACAATCAGAATATTAGTTCACCCGAATATTGCCCACCGGGACGGGAAGCTGTTGACCGGAGTTCCGACCCGCCGGAGAAAACATTCTACAATGACCCGGAACTCAGTTACACTATTGACAAACCAATAAAAAATTGGGACGAAAAGAGAGTTCAGTGGCTGCAGCTTCATCCTTCGTTCGCCGCCGGAAGAGTTAACCGTGTGCTCCTCCTCTCAGGATCACAGCCCACACCATGCAAAAACCCTAGAGGTGATCATTTACTGTTAAGGTTTTTTAAAAACAAAGTTGACTACTGTAGAATCCATGGCTACGATATTTTCTACGGAAACACGTTTTTTCACCCTAAAATGCGTTCTTATTGGGCGAAAATACCGCTTGTTCGGGCCGCCATGCTGGCTCATCCTGAATCCGAGTGGATTCTATGGGTTGACTCAGATGCAATCTTCACTGACATGGATTTCAAAATTCCATTACACAAATATAATGACTACAACTTCATCGTCCACGGCTGGCCTGATTTGATTTTTAAGAAGAAAAGCTGGGTCGCTATAAATGCTGGGATTTTTCTTATTCGAAACTGTCAATGGTCCATGGATTTCTTAGATGTTTGGGCTAATATGGGCCCGAAAAGCCCAGAATACAAGCAATGGGGCAAAATCTTACGAACAACTTTCAAGGACAAAACGTTCCCGGAGTCCGACGACCAATCCGCACTGAGCTATTTAATACTGAAAGGAGAACAAAAATGGCGGAGCAAAATTCACGCAATTACTGATTACTCTCTACACGGATACTGGCTAGGAATAGTAAACAGATTTGAAAACATAACAGCGAATTACATGAAGATAGAGAGAGATGTACCCAAGTTACGGAGGAGACACGCGGAGGCTGTGAGCCACAGCTACGCGGCCGCGTGGGAGCCCTTGTTGGCGGAGGGCGCTGACGAAAAGGGCGGATGGAGGCGGCCGTTTATCACGCACTTCACGGGGTGTCAGCCATGTAGTGGGGACCACGCGACGGAGTATGTGGGTGATTCATGTTGGGTGGGAATGGAACGAGCGTTGAACTTTGCGGATAATCAGGTGCTACGTAACTTTGGGTTCATGCATGATGACATCAAAAGTAATTCCCCTGTCTCTCCCTTAAATTTCGATTTTCCGGCTGAAGACAGTGAAGAATTCGTGTGAAAGAAAAAAAACATGACCTCAG</genome_strand>
        <mrna_strand>TCTCACTCACATACCATATTTTCAGTATCTTTCTTTTTCATTTAC-ACGGGCCATGGCCCATAACGTGTTTCGGGCCAAACAGCAATCGTCTTCTCCGAGAGACAAATCTCTGTTCGCGGCGGCCATAGTTGCGGTTTTACTTGTCTGTGCTATTTGGTCATTTACTGATCCTTTGCCTAATTTATCAGGTTTGTTATATAGTCAGAGTATTAGTTCACCGGATTATTGCCCACCGGGACGAGAAGCGGTTGACCGGAGTTCCGACCCGCTGGAGAAAACATTCTACGATGAACCGGAACTCAGTTACACTATTAACAAACCAATCAAAAATTGGGACGAAAAGAGAGTTCAGTGGCTGAAGCTTCATCCTTCGTTCGCCGCCGGAAGAGTTAACCGTGTGCTCCTCCTCTCAGGATCACAGCCCACTCCATGCAAAAACGCTAGAGGTGATCATTTACTCTTAAGGTTTTTCAAAAACAAAGTTGATTACTGTAGAATCCATGGCTATGATATTTTCTACGGAAACACGTTTTTTCACCCTAAAATGCGTTCTTATTGGGCCAAAATACCGCTTGTTCGGGCCGCCATGCTGGCTCATCCTGAATCCGAGTGGATTCTATGGATTGATTCAGATGCAATTTTCACTGATATGGATTTCAAAATTCCATTACACAAATACAATGACTACAACTTCATCGTCCATGGCTGGCCTGATTTGATTTTTAAGAAGAAAAGCTGGGTCGCTATAAATGCTGGGATTTTTCTTATCCGAAACTGTCAATGGTCTATGGATTTCTTAGATGTTTGGGCTAATATGGGCCCGAAAAGCCCAGAATACAAGCAATGGGGCAAAATCTTACGGACAACTTTCAAGGACAAAACGTTCCCGGAGTCCGACGACCAATCAGCACTGAGCTATTTAATACTGAAAGGAGAACGAAAATGGCGGAGCAAAATTCACGCAATCACTGATTACTCTCTACACGGCTACTGGCTAGGAATAGTAAACAGATTTGACAAAATAACAGAGAATTACACGAAGATAGAGAGAGATGTACCAAAGTTACGGAGGAGACACGCGGAGGCAGTCAGCGACAGCTACGCGGAGGCGAGGGAGCCGTTGTTGGCGGAGGGCGCTGACGGAAAGGGCGGATGGAGGCGGCCGTTTATCACGCACTTCACGGGGTGTCAGCCATGTAGTGGGGACCACGCGGCGGAGTATGTGGGTGATTCATGTTGGGTGGGAATGGAACGAGCGTTGAACTTTGCGGATAATCAGGTGCTACGTAACTTCGGATTCATGCATGATGATATCAAAAGTAATTCCCCTGTCTCTCCGTTAAATTTCGATTTTCCAGCTGAAGACAGTGAAGAATTCGTGTGAAAGAAAAACAA-AAAAACGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456685" ref_strand="+" ref_description="SGN-E456685 [cSTS-30-A18]">
      <seq>ccgccatgctggctcatcctgaatccgagtggattctatggattgattcagatgcaattttcactgatatggatttcaaaattccattacacaaatacaatgactacaacttcatcgtccatggctggcctgatttgatttttaagaagaaaagctgggtcgctataaatgctgggatttttcttatccgaaactgtcaatggtctatggatttcttagatgtttgggctaatatgggcccgaaaagcccagaatacaagcaatggggcaaaatcttacggacaactttcaaggacaaaacgttcccggagtccgacgaccaatcagcactgagctatttaatactgaaaggagaacgaaaatggcggagcaaaattcacgcaatcactgattactctctacacggctactggctaggaatagtaaacagatttgacaaaataacagagaattacacgaagatagagagagatgtaccgaagttacggaggagacacgcggaggcagtgagcgacagctacgcggaggcgagggagccgttgttggcggagggcgctgacggaaagggcggatggaggcggccgtttatcacgcacttcacggggtgtcagccatgtagtggggaccacgcggcggagtatgtgggtgattcatgttggggtgggaatggaacgagcgttgaactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="81631" stop="80345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81331" g_stop="80645" g_length="687"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="688" r_length="688" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E456685" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81331" e_stop="80645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCCATGCTGGCTCATCCTGAATCCGAGTGGATTCTATGGGTTGACTCAGATGCAATCTTCACTGACATGGATTTCAAAATTCCATTACACAAATATAATGACTACAACTTCATCGTCCACGGCTGGCCTGATTTGATTTTTAAGAAGAAAAGCTGGGTCGCTATAAATGCTGGGATTTTTCTTATTCGAAACTGTCAATGGTCCATGGATTTCTTAGATGTTTGGGCTAATATGGGCCCGAAAAGCCCAGAATACAAGCAATGGGGCAAAATCTTACGAACAACTTTCAAGGACAAAACGTTCCCGGAGTCCGACGACCAATCCGCACTGAGCTATTTAATACTGAAAGGAGAACAAAAATGGCGGAGCAAAATTCACGCAATTACTGATTACTCTCTACACGGATACTGGCTAGGAATAGTAAACAGATTTGAAAACATAACAGCGAATTACATGAAGATAGAGAGAGATGTACCCAAGTTACGGAGGAGACACGCGGAGGCTGTGAGCCACAGCTACGCGGCCGCGTGGGAGCCCTTGTTGGCGGAGGGCGCTGACGAAAAGGGCGGATGGAGGCGGCCGTTTATCACGCACTTCACGGGGTGTCAGCCATGTAGTGGGGACCACGCGACGGAGTATGTGGGTGATTCATGTT-GGGTGGGAATGGAACGAGCGTTGAACTTTG</genome_strand>
        <mrna_strand>CCGCCATGCTGGCTCATCCTGAATCCGAGTGGATTCTATGGATTGATTCAGATGCAATTTTCACTGATATGGATTTCAAAATTCCATTACACAAATACAATGACTACAACTTCATCGTCCATGGCTGGCCTGATTTGATTTTTAAGAAGAAAAGCTGGGTCGCTATAAATGCTGGGATTTTTCTTATCCGAAACTGTCAATGGTCTATGGATTTCTTAGATGTTTGGGCTAATATGGGCCCGAAAAGCCCAGAATACAAGCAATGGGGCAAAATCTTACGGACAACTTTCAAGGACAAAACGTTCCCGGAGTCCGACGACCAATCAGCACTGAGCTATTTAATACTGAAAGGAGAACGAAAATGGCGGAGCAAAATTCACGCAATCACTGATTACTCTCTACACGGCTACTGGCTAGGAATAGTAAACAGATTTGACAAAATAACAGAGAATTACACGAAGATAGAGAGAGATGTACCGAAGTTACGGAGGAGACACGCGGAGGCAGTGAGCGACAGCTACGCGGAGGCGAGGGAGCCGTTGTTGGCGGAGGGCGCTGACGGAAAGGGCGGATGGAGGCGGCCGTTTATCACGCACTTCACGGGGTGTCAGCCATGTAGTGGGGACCACGCGGCGGAGTATGTGGGTGATTCATGTTGGGGTGGGAATGGAACGAGCGTTGAACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E455351" ref_strand="+" ref_description="SGN-E455351 [cSTS-26-E13]">
      <seq>cacataccatattttcagtatctttctttttcatttacacgggccatggcccataacgtgtttcgggccaaacagcaatcgtcttctccgagagacaaatctctgttcgcggcggccatagttgcggttttacttgtctgtgctatttggtcatttactgatcctttgcctaatttatcaggtttgttatatagtcagagtattagttcaccggattattgcccaccgggacgagaagcggttgaccggagttccgacccgctggagaaaacattctacgatgaaccggaactcagttacactattaacaaaccaatcaaaaattgggacgaaaagagagttcagtggctgaagcttcatccttcgttcgccgccggaagagttaaccgtgtgctcctcctctcaggatcacagcccactccatgcaaaaacgctagaggtgatcatttactcttaaggtttttcaaaaacaaagttgattactgtagaatccatggctatgatattttctacggaaacacgttttttcaccctaaaatgcgttcttattgggccaaaataccgcttgttcgggccgccatgctggctcatcctgaatccgagtggattctatggattgattcagatgcaattttcactgatatggatttcaaaattccattacacaaatacaatgactacaacttcatcgtccatggctggcctgatttgattttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="82206" stop="80888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81906" g_stop="81188" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="718" r_length="718" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E455351" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81906" e_stop="81188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATACCATAGTTTCAGTATCTTTCCTTTTCATTCACAACGGGCCATGGCCCATAACGTGTTTCGGGCCAAACAGCAATCGTCTTCTCCGAGAGACAAATCTCTGTTCGCGGCCGTCATAGTTGCGGTTCTACTTGTCTGTGCTATTTGGTCATTTACTGATCCTTTGCCTAATTTATCAGGTTTATTATACAATCAGAATATTAGTTCACCCGAATATTGCCCACCGGGACGGGAAGCTGTTGACCGGAGTTCCGACCCGCCGGAGAAAACATTCTACAATGACCCGGAACTCAGTTACACTATTGACAAACCAATAAAAAATTGGGACGAAAAGAGAGTTCAGTGGCTGCAGCTTCATCCTTCGTTCGCCGCCGGAAGAGTTAACCGTGTGCTCCTCCTCTCAGGATCACAGCCCACACCATGCAAAAACCCTAGAGGTGATCATTTACTGTTAAGGTTTTTTAAAAACAAAGTTGACTACTGTAGAATCCATGGCTACGATATTTTCTACGGAAACACGTTTTTTCACCCTAAAATGCGTTCTTATTGGGCGAAAATACCGCTTGTTCGGGCCGCCATGCTGGCTCATCCTGAATCCGAGTGGATTCTATGGGTTGACTCAGATGCAATCTTCACTGACATGGATTTCAAAATTCCATTACACAAATATAATGACTACAACTTCATCGTCCACGGCTGGCCTGATTTGATTTTTA</genome_strand>
        <mrna_strand>CACATACCATATTTTCAGTATCTTTCTTTTTCATTTAC-ACGGGCCATGGCCCATAACGTGTTTCGGGCCAAACAGCAATCGTCTTCTCCGAGAGACAAATCTCTGTTCGCGGCGGCCATAGTTGCGGTTTTACTTGTCTGTGCTATTTGGTCATTTACTGATCCTTTGCCTAATTTATCAGGTTTGTTATATAGTCAGAGTATTAGTTCACCGGATTATTGCCCACCGGGACGAGAAGCGGTTGACCGGAGTTCCGACCCGCTGGAGAAAACATTCTACGATGAACCGGAACTCAGTTACACTATTAACAAACCAATCAAAAATTGGGACGAAAAGAGAGTTCAGTGGCTGAAGCTTCATCCTTCGTTCGCCGCCGGAAGAGTTAACCGTGTGCTCCTCCTCTCAGGATCACAGCCCACTCCATGCAAAAACGCTAGAGGTGATCATTTACTCTTAAGGTTTTTCAAAAACAAAGTTGATTACTGTAGAATCCATGGCTATGATATTTTCTACGGAAACACGTTTTTTCACCCTAAAATGCGTTCTTATTGGGCCAAAATACCGCTTGTTCGGGCCGCCATGCTGGCTCATCCTGAATCCGAGTGGATTCTATGGATTGATTCAGATGCAATTTTCACTGATATGGATTTCAAAATTCCATTACACAAATACAATGACTACAACTTCATCGTCCATGGCTGGCCTGATTTGATTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E425801" ref_strand="+" ref_description="SGN-E425801 [STM-45-J3]">
      <seq>cacataccatattttcagtatctttctttttcatttacacgggccatggcccataacgtgtttcgggccaaacagcaatcgtcttctccgagagacaaatctctgttcgcggcggccatagttgcggttttacttgtctgtgctatttggtcatttactgatcctttgcctaatttatcaggtttgttatatagtcagagtattagttcaccggattattgcccaccgggacgagaagcggttgaccggagttccgacccgctggagaaaacattctacgatgaaccggaactcagttacactattaacaaaccaatcaaaaattgggacgaaaagagagttcagtggctgaagcttcatccttcgttcgccgccggaagagttaaccgtgtgctcctcctctcaggatcacagcccactccatgcaaaaacgctagaggtgatcatttactcttaagggttttcaaaaacaaagttgattactgtagaatccatggctatgatattttctacggaaacacgtttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="82206" stop="81078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81906" g_stop="81378" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E425801" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81906" e_stop="81378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATACCATAGTTTCAGTATCTTTCCTTTTCATTCACAACGGGCCATGGCCCATAACGTGTTTCGGGCCAAACAGCAATCGTCTTCTCCGAGAGACAAATCTCTGTTCGCGGCCGTCATAGTTGCGGTTCTACTTGTCTGTGCTATTTGGTCATTTACTGATCCTTTGCCTAATTTATCAGGTTTATTATACAATCAGAATATTAGTTCACCCGAATATTGCCCACCGGGACGGGAAGCTGTTGACCGGAGTTCCGACCCGCCGGAGAAAACATTCTACAATGACCCGGAACTCAGTTACACTATTGACAAACCAATAAAAAATTGGGACGAAAAGAGAGTTCAGTGGCTGCAGCTTCATCCTTCGTTCGCCGCCGGAAGAGTTAACCGTGTGCTCCTCCTCTCAGGATCACAGCCCACACCATGCAAAAACCCTAGAGGTGATCATTTACTGTTAAGGTTTTTTAAAAACAAAGTTGACTACTGTAGAATCCATGGCTACGATATTTTCTACGGAAACACGTTTTTT</genome_strand>
        <mrna_strand>CACATACCATATTTTCAGTATCTTTCTTTTTCATTTAC-ACGGGCCATGGCCCATAACGTGTTTCGGGCCAAACAGCAATCGTCTTCTCCGAGAGACAAATCTCTGTTCGCGGCGGCCATAGTTGCGGTTTTACTTGTCTGTGCTATTTGGTCATTTACTGATCCTTTGCCTAATTTATCAGGTTTGTTATATAGTCAGAGTATTAGTTCACCGGATTATTGCCCACCGGGACGAGAAGCGGTTGACCGGAGTTCCGACCCGCTGGAGAAAACATTCTACGATGAACCGGAACTCAGTTACACTATTAACAAACCAATCAAAAATTGGGACGAAAAGAGAGTTCAGTGGCTGAAGCTTCATCCTTCGTTCGCCGCCGGAAGAGTTAACCGTGTGCTCCTCCTCTCAGGATCACAGCCCACTCCATGCAAAAACGCTAGAGGTGATCATTTACTCTTAAGGGTTTTCAAAAACAAAGTTGATTACTGTAGAATCCATGGCTATGATATTTTCTACGGAAACACGTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E619597" ref_strand="+" ref_description="SGN-E619597 [70289]">
      <seq>tattttcttcttatcagtccttttttcttgcatatctgccaataatactcaaccgacggttcaaattttctttatcaaattttgaaaatgagcacaaataagggtaacaaagagagcagaattaagaggtgcataaaagcaccaattagagttttaattaaagcaagagactgttacgtccatagcttgatggattgttctggaaaaattgggtatggcagtgttatgggtgttccacaaatctctgctttgccgagaagtttcagtgtcaattcatctgtatcaagtagcagagacgaagatttcagggagcttgtgcgaattgcttccagaaaaagtctggtaaacaaaatggaaacagagtttctgaggcaaaaatcaattgctaaaaatgttgatttggtgcctcggagtcgatctgttgcaattggacgaatcgatgaagataagccgtgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="90082" stop="89012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89782" g_stop="89312" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E619597" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.028" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E619597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89782" e_stop="89312"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTCTTCTTATCAGTCCTTTTTTCTTGCATATCTGTATTTGCCAATAATACTCAACATTCGACGATTCAAATTCTTGGATATCAAAGTTTGAAAATGAGTACAAACAAGGGAAGCAAAGAGAGTAGACTCACGAGGTGCATAAAAGCACCAATTAGAGTTTTAATTAAAGCAAGAGACTGTTACGTCCATAGCTTGATGGATTGTTCTGGAAAAATTGGGTATGGCAGTGTTATGGGTGTTCCACAAATCTCTGCTTTACCGAGAAGTTTCAGTGTCAATTCATCTGTATCTAGTAGCAGGGACGAAGATTTCAGGGAGCTGGTGCGAATTGCTTCCAGAAAAAGTCTGGTAAACAAAATGGAAACAGAGCTTCTGAGACAAAAATCAATTGCTAGTAAAAATGTTGATGCGGTGCCACGGAGTCGATCTGTTGCAATTGGAAGAATCGATGAAGATAAGCCATGTGA</genome_strand>
        <mrna_strand>TATTTTCTTCTTATCAGTCCTTTTTTCTTGCATATC------TGCCAATAATACTCAAC---CGACGGTTCAAATT-TTCTTTATCAAATTTTGAAAATGAGCACAAATAAGGGTAACAAAGAGAGCAGAATTAAGAGGTGCATAAAAGCACCAATTAGAGTTTTAATTAAAGCAAGAGACTGTTACGTCCATAGCTTGATGGATTGTTCTGGAAAAATTGGGTATGGCAGTGTTATGGGTGTTCCACAAATCTCTGCTTTGCCGAGAAGTTTCAGTGTCAATTCATCTGTATCAAGTAGCAGAGACGAAGATTTCAGGGAGCTTGTGCGAATTGCTTCCAGAAAAAGTCTGGTAAACAAAATGGAAACAGAGTTTCTGAGGCAAAAATCAATTGC---TAAAAATGTTGATTTGGTGCCTCGGAGTCGATCTGTTGCAATTGGACGAATCGATGAAGATAAGCCGTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E269108" ref_strand="+" ref_description="SGN-E269108 [cLEI-16-E5]">
      <seq>tgagctcatatttgcttgtcgattgcgaagttcccaactgtcttagccaaattagtcttcgccggtgaactgtgaaacctccatctaacaatgtcctggtttgctcgatctattgccagcactctcagacttgaagacgacgacgatgacagagacgacgccgtgtcaagcaatcacgatcactctactggcaaacctactacggagaagcaacagaaagatgaggatgattcattgccagtatcaccgtcacgcggcgttaaggatgacttctcagagctcactaaaaccctaacccgtcagttttggggagtggcctctttcctggccccaccgtcccaatccgagcccgacaaatctttactggatccgacttcagaaccagctcgagattcggatgacgaggagtccgattctgcggggatcgcgggtttgcggagtgatattgctgaaattggggggagattcaagagtgggatatctaagctttcgaagaatattcccgtgtcggaaatcaccaaaatggcgtccaacttactgcaactgggaccggaggaggaagaagataagaggtttgattcaggtagaggtgcagttggtgttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="99150" stop="100355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99450" g_stop="100055" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E269108" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99450" e_stop="100055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCTCATATTTGCTTGTCGATTGCGAAGTTCCCAACTGTCTTAGCCAAATTAGTCTTCGCCGGTGAACTGTGAAACCTCCATCTAACAATGTCCTGGTTTGCTCGATCTATTGCCAGCACTCTCAGACTTGAAGACGACGACGATGACAGAGACGACGCCGTGTCAAGCAATCACGATCACTCTACTGGCAAACCTACTACGGAGAAGCAACAGAAAGATGAGGATGATTCATTGCCAGTATCACCGTCACGCGGCGTTAAGGATGACTTCTCAGAGCTCACTAAAACCCTAACCCGTCAGTTTTGGGGAGTGGCCTCTTTCCTGGCCCCACCGTCCCAATCCGAGCCCGACAAATCTTTACTGGATCCGACTTCAGAACCAGCTCGAGATTCGGATGACGAGGAGTCCGATTCTGCGGGGATCGCGGGTTTGCGGAGTGATATTGCTGAAATTGGGGGGAGATTCAAGAGTGGGATATCTAAGCTTTCGAAGAATATTCCCGTGTCGGAAATCACCAAAATGGCGTCCAACTTACTGCAACTGGGACCGGAGGAGGAAGAAGATAAGAGGTTTGATTCAGGTAGAGGTGCAGTTGGTGTTACT</genome_strand>
        <mrna_strand>TGAGCTCATATTTGCTTGTCGATTGCGAAGTTCCCAACTGTCTTAGCCAAATTAGTCTTCGCCGGTGAACTGTGAAACCTCCATCTAACAATGTCCTGGTTTGCTCGATCTATTGCCAGCACTCTCAGACTTGAAGACGACGACGATGACAGAGACGACGCCGTGTCAAGCAATCACGATCACTCTACTGGCAAACCTACTACGGAGAAGCAACAGAAAGATGAGGATGATTCATTGCCAGTATCACCGTCACGCGGCGTTAAGGATGACTTCTCAGAGCTCACTAAAACCCTAACCCGTCAGTTTTGGGGAGTGGCCTCTTTCCTGGCCCCACCGTCCCAATCCGAGCCCGACAAATCTTTACTGGATCCGACTTCAGAACCAGCTCGAGATTCGGATGACGAGGAGTCCGATTCTGCGGGGATCGCGGGTTTGCGGAGTGATATTGCTGAAATTGGGGGGAGATTCAAGAGTGGGATATCTAAGCTTTCGAAGAATATTCCCGTGTCGGAAATCACCAAAATGGCGTCCAACTTACTGCAACTGGGACCGGAGGAGGAAGAAGATAAGAGGTTTGATTCAGGTAGAGGTGCAGTTGGTGTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E366680" ref_strand="+" ref_description="SGN-E366680 [cLPT-17-C17]">
      <seq>tcatatttgcttgtcgattgcgaagttcccagctgtcttagccaaattattcttcgccggcgaactgtgaaacctccaccttacaatgtcctggtttgctcgatctattgccagcactctcatactttaagacaacgacgatgacttagactacgccgtgtcaagcaatcactatcactctactggcaaacctactacggagaagctacagaaagatgatgatgattcattgccagtatcaccgtctctcggcgtttatgatgacttctcatagctcaccaaaaccctatcccgtcagttttggggagtggcctctttcctggccccaccgtcccaatccgagcccgacaaatctttactggatccgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="99155" stop="100125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99455" g_stop="99825" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E366680" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99455" e_stop="99825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATATTTGCTTGTCGATTGCGAAGTTCCCAACTGTCTTAGCCAAATTAGTCTTCGCCGGTGAACTGTGAAACCTCCATCTAACAATGTCCTGGTTTGCTCGATCTATTGCCAGCACTCTCAGACTTGAAGACGACGACGATGACAGAGACGACGCCGTGTCAAGCAATCACGATCACTCTACTGGCAAACCTACTACGGAGAAGCAACAGAAAGATGAGGATGATTCATTGCCAGTATCACCGTCACGCGGCGTTAAGGATGACTTCTCAGAGCTCACTAAAACCCTAACCCGTCAGTTTTGGGGAGTGGCCTCTTTCCTGGCCCCACCGTCCCAATCCGAGCCCGACAAATCTTTACTGGATCCGACTT</genome_strand>
        <mrna_strand>TCATATTTGCTTGTCGATTGCGAAGTTCCCAGCTGTCTTAGCCAAATTATTCTTCGCCGGCGAACTGTGAAACCTCCACCTTACAATGTCCTGGTTTGCTCGATCTATTGCCAGCACTCTCATACTTTAAGACAACGACGATGACTTAGACTACGCCGTGTCAAGCAATCACTATCACTCTACTGGCAAACCTACTACGGAGAAGCTACAGAAAGATGATGATGATTCATTGCCAGTATCACCGTCTCTCGGCGTTTATGATGACTTCTCATAGCTCACCAAAACCCTATCCCGTCAGTTTTGGGGAGTGGCCTCTTTCCTGGCCCCACCGTCCCAATCCGAGCCCGACAAATCTTTACTGGATCCGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280863" ref_strand="+" ref_description="SGN-E280863 [cLEL-6-P24](-)">
      <seq>agatttgtcgggctcggattgggacggtggggccaggaaagaggccactccccaaaactgacgggttagggttttagtgagctctgagaagtcatccttaacgccgcgtgacggtgatactggcaatgaatcatcctcatctttctgttgcttctccgtagtaggtttgccagtagagtgatcgtgattgcttgacacggcgtcgtctctgtcatcgtcgtcgtcttcaagtggtgagagtgctggcaatagatcgaccaaaccaggacattgttagatggaggtttcacagttcaccggcgctcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="100109" stop="99209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99809" g_stop="99512" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E280863" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99809" e_stop="99512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTGTCGGGCTCGGATTGGGACGGTGGGGCCAGGAAAGAGGCCACTCCCCAAAACTGACGGGTTAGGGTTTTAGTGAGCTCTGAGAAGTCATCCTTAACGCCGCGTGACGGTGATACTGGCAATGAATCATCCTCATCTTTCTGTTGCTTCTCCGTAGTAGGTTTGCCAGTAGAGTGATCGTGATTGCTTGACACGGCGTCGTCTCTGTCATCGTCGTCGTCTTCAAGT-CTGAGAGTGCTGGCAATAGATCGAGCAAACCAGGACATTGTTAGATGGAGGTTTCACAGTTCACCG</genome_strand>
        <mrna_strand>AGATTTGTCGGGCTCGGATTGGGACGGTGGGGCCAGGAAAGAGGCCACTCCCCAAAACTGACGGGTTAGGGTTTTAGTGAGCTCTGAGAAGTCATCCTTAACGCCGCGTGACGGTGATACTGGCAATGAATCATCCTCATCTTTCTGTTGCTTCTCCGTAGTAGGTTTGCCAGTAGAGTGATCGTGATTGCTTGACACGGCGTCGTCTCTGTCATCGTCGTCGTCTTCAAGTGGTGAGAGTGCTGGCAATAGATCGACCAAACCAGGACATTGTTAGATGGAGGTTTCACAGTTCACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706377" ref_strand="+" ref_description="SGN-E706377 [FA29DB10]">
      <seq>gaggccgtcccaatccgagcccgacaaatctttactggatccgacttcagaaccagctcgagattcggatgacgaggagtccgattctgcggggatcgcgggtttgcggagtgatattgctgaaattggggggagattcaagagtgggatatctaagctttcgaagaatattcccgtgtcggaaatcaccaaaatggcgtccaacttactgcaactgggaccggaggaggaagaagataagaggtttgattcaggtagaggtgcagttggtgttactgaggaagtagtggcttttgtgagggacattgctatgcatcctgagacatggttggatttccctttgttcgaggatgaagatgacgaagtagattttgacttgtctgatgcacaacaagagcatgcattagctgttgagcgttttgctccaagactggctgctttgaggattgagctctgcccaggctacatgaatgaggctcgcttttgggagatttactttgttcttctgcaccctagactgaataaacaagatgctgaacttctatccacaccccaggtattcaatgccagggcctcattatcgcaagagttacaaaaacgaaccaagccaatagaaggagattggtcaaaggaggagacttttaaatcaactgacgggggtggttctcaacatgaggagatgcttactgtcccttctgctccgctctccgcggatgcggttncagacatgtctagtgtggatgtttcctctttatctgtagtggtcggctctggtaccgatgtgcaccctgtcattagtgaaaatcaaacagttgatagacttgtggctngagaaggacctattaccctaagcaaagatgaaaaatttgcatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="99483" stop="103308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99779" g_stop="100143" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100144" i_stop="101123" i_length="980">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101124" g_stop="101314" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="556" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101315" i_stop="102688" i_length="1374">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102689" g_stop="103008" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="876" r_length="320" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E706377" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99779" e_stop="100143"/>
          <exon e_start="101124" e_stop="101314"/>
          <exon e_start="102689" e_stop="103008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACCGTCCCAATCCGAGCCCGACAAATCTTTACTGGATCCGACTTCAGAACCAGCTCGAGATTCGGATGACGAGGAGTCCGATTCTGCGGGGATCGCGGGTTTGCGGAGTGATATTGCTGAAATTGGGGGGAGATTCAAGAGTGGGATATCTAAGCTTTCGAAGAATATTCCCGTGTCGGAAATCACCAAAATGGCGTCCAACTTACTGCAACTGGGACCGGAGGAGGAAGAAGATAAGAGGTTTGATTCAGGTAGAGGTGCAGTTGGTGTTACTGAGGAAGTAGTGGCTTTTGTGAGGGACATTGCTATGCATCCTGAGACATGGTTGGATTTCCCTTTGTTCGAGGATGAAGATGACGAAGGTGTCTTTTTATTGTTCCTTTTAGATGTTCACCTAATTTTAAGCCTGTACTTTGTGCTTTCATTGCAATTTTTCTTACTCATATCAATACTCACTACTTGTGCAAAACTGATTTTGGTTATTAGAATGCTCTATAATGAATCTTTGACATCGATATAATAGTTTGGACTGCTCAATGCGTAGGTGCCACACAACCTGACTTGAACATGGAAGATTTTCCTCTCTTAGGCGAAGATGATATGAAACTAACTGTTTGATAACAAGCAGATTTCAAAGGTTAAATATACTCTTGGAGATTTGTAGCTTGGAAATAGATCACTCATCAATCCACACTGGCCTTAAAACTGAAAACACTTTAATTACTAGGTAGCAGCTTCAAAGATAGAAAAAAATGGAAGCTTTATTTAGGTTTCAATTTGATTATTGCAGGATTCAAGGTAAAGAATGAAATGCTTGTTTGAATACTTGAAAGTAGAGTGGTAAAGTTTCTAACTTTGTGAATATATCTTTCGGATGTGCAGAGTCAAACAGATGCTTGTTTATGTGTATTTCATGGTGAAACATAAACCTCCGGGTGTTTCCGTGACTGCCCTTTCATATAACGATGACTTTCCTTATCAAAGAAATATATATATCACGATGACTTAGGTCATATATGTACTTGTTCACCCTGAAGTGGATGAGCAAGATGCTGAAATTCTATTAATATATATATATATATTTTATTGTTGTAAGTTTTATTAATACTCCCATTATGATGGTGACATGGAAATATGTCGACTCCCTTTCTCACTTTTATTTTCTTATCTGTGTCCTGTTTTTCTGGTTAATCTCAAAACCCTTACCTAAACTATTGGTTATCATACATGACTGTTACTCTTTCTCACTTATGTGACTGTCAGTACATTATTGTGTAATGTATGCTCTGCGAGACGTATATTTAAAGATGGAATATCTAACATTTCGCTCTATATATTACAGTAGATTTTGACTTGTCTGATGCACAACAAGAGCATGCATTAGCTGTTGAGCGTTTTGCTCCAAGACTGGCTGCTTTGAGGATTGAGCTCTGCCCAGGCTACATGAATGAGGCTCGCTTTTGGGAGATTTACTTTGTTCTTCTGCACCCTAGACTGAATAAACAAGATGCTGAACTTCTATCCACACCCCAGGTAAGGCAGTGCATGTAATGCTATAAATGGTTCCATTTCTCATTTACAATCTATTTAGCACTTTAAATGATGCTCTTTTTATCTCCTTTTATAAATGAAAAAAATGCTTTATCGACAAAAGTAGTAAAAGACAGTCCATGCACAACTTACTGTTTTTTGAATCATTGTCTCTGATAACGATTGGCACTACTTACTGGTTCCTAATGAGTAGAATGTAGTTTAATGGATACGTTGTTGGACCTGGAGAAAGGCTGATTAGGATTTAATGAATGGAAGGTCACTTGCTAAATCTTTCTTTGTTTCGAGTTAGTCAAATCTTCCACACCTTTTTTCTATTTGATATGGTTGGCCATTCACTCATGTAGTTCCCATCAAGGTCATTTTTGTCTGGGCTGGTTATGAAATAAGAATTGAAGTTTTTATAGTAGAAGTGGGACTAATATGTGTACAGCTCTTACTGTGAAGTAGCTCTTGTGTTGTTGTGTTACTATTTATAATGGATGATTAAGTATTAAAGAGCAGAAGGAGAAATATCCTTATGAAAAATGGATAGAGATGGGACTATTCTAAACAGAAAAGTTATTGTGGGTTTGGAAAAAACATTTTCAAATCATAGTTATTTATGGGGTTTAGAGAATTGGCCTGGTCTCATCTGATTCTAGGGTAACAACTCTTATACAGAAGTAATTATTTCTTTCTGGTAATATGTATGGGTCAGAATAGTTTTTTCTCTAGTGAGAAGATTTTATGAAACCAATGCCAGTATTGCTGTAGCTAGTATTTAAACAATCCATCAGAGCTTAGAGATTATTCATTTTCCCATTTCCGACTCATTGCTATTTTTGGGACTTTACTCCTGTACATGTTCAGCATATTGATGTCATATTGACACCTCGCTATTCAGGGGAGCTAGTCAAAACATCTTCCTACCTATCTTTTTGCATCAAATCCTTCTTTTATTGTTTTGCTGCTTATGTTGCTACTTGGAAATTCTTCTTCTCTTCTTTTTAGCAGTTGAAAGCTTCAAGGTTGTATTTTTTTATCATTACTATTGGTATTTTCTGGTGAGCGTCCTATTGACATTTTTGGGCTTCTTGTGAACCCCCTGGACCCCTAATGTGTACCGTAAACATGTATTTTTCAGTAGTTGTGCATTTGGATGAGTAGGGAGGGAAATTATACTCTATCCATCTATATATAATGAGTATGAAACCAATAGTAAAACAGAGTGATTGCGCATATGCTTGGTTAGTTAGCATATGAACAAAGCATGCCTTCTAAAAAGTAGTCTACAGTTCACTAATCCTTTATTTCTTGTACTAGAGAATAGTTATTGGTAACATTTGGTGCTGAAAATGCTAATCCTGTGTGCAGGTATTCAATGCCAGGGCCTCATTATCGCAAGAGTTACAAAAACGAACCAAGCCAATAGAAGGAGATTGGTCAAAGGAGGAGACTTTTAAATCAACTGACGGGGGTGGTTCTCAACATGAGGAGATGCTTACTGTCCCTTCTGCTCCGCTCTCCGCGGATGCGGTTCAAGACATGTCTAGTGTGGATGTTTCCTCTTTATCTGTAGTGGTCGGCTCTGGTACCGATGTGCACCCTGTCATTAGTGAAAATCAAACAGTTGATAGACTTGTGGCTGAAGAAGGACCTATTACCCTAAGCAAAGATGAAAAATTGCAATCTGC</genome_strand>
        <mrna_strand>GAGGCCGTCCCAATCCGAGCCCGACAAATCTTTACTGGATCCGACTTCAGAACCAGCTCGAGATTCGGATGACGAGGAGTCCGATTCTGCGGGGATCGCGGGTTTGCGGAGTGATATTGCTGAAATTGGGGGGAGATTCAAGAGTGGGATATCTAAGCTTTCGAAGAATATTCCCGTGTCGGAAATCACCAAAATGGCGTCCAACTTACTGCAACTGGGACCGGAGGAGGAAGAAGATAAGAGGTTTGATTCAGGTAGAGGTGCAGTTGGTGTTACTGAGGAAGTAGTGGCTTTTGTGAGGGACATTGCTATGCATCCTGAGACATGGTTGGATTTCCCTTTGTTCGAGGATGAAGATGACGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTTTGACTTGTCTGATGCACAACAAGAGCATGCATTAGCTGTTGAGCGTTTTGCTCCAAGACTGGCTGCTTTGAGGATTGAGCTCTGCCCAGGCTACATGAATGAGGCTCGCTTTTGGGAGATTTACTTTGTTCTTCTGCACCCTAGACTGAATAAACAAGATGCTGAACTTCTATCCACACCCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCAATGCCAGGGCCTCATTATCGCAAGAGTTACAAAAACGAACCAAGCCAATAGAAGGAGATTGGTCAAAGGAGGAGACTTTTAAATCAACTGACGGGGGTGGTTCTCAACATGAGGAGATGCTTACTGTCCCTTCTGCTCCGCTCTCCGCGGATGCGGTTNCAGACATGTCTAGTGTGGATGTTTCCTCTTTATCTGTAGTGGTCGGCTCTGGTACCGATGTGCACCCTGTCATTAGTGAAAATCAAACAGTTGATAGACTTGTGGCTNGAGAAGGACCTATTACCCTAAGCAAAGATGAAAAATTTGCATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700217" ref_strand="+" ref_description="SGN-E700217 [FA12CA05]">
      <seq>caagagtgggatatctaagctttcgaagaatattcccgtgtcggaaatcaccaaaatggcgtccaacttactgcaactgggaccggaggaggaagaagataagaggtttgattcaggtagaggtgcagttggtgttactgaggaagtagtggcttttgtgagggacattgctatgcatcctgagacatggttggatttccctttgttcgaggatgaagatgacgaagtagattttgacttgtctgatgcacaacaagagcatgcattagctgttgagcgttttgctccaagactggctgctttgaggattgagctctgcccaggctacatgaatgaggctcgcttttgggagatttactttgttcttctgcaccctagactgaataaacaagatgctgaacttctatccacaccccaggtattcaatgccagggcctcattatcgcaagagttacaaaaacgaaccaagccaatagaaggagattggtcaaaggaggagacttttaaatcaactgacgggggtggttctcaacatgaggagatgcttactgtcccttctgctccgctctccgcggatgcggttcaagacatgtctagtgtggatgtttcctctttatctgtagtggtcggctctggtaccgatgtgcaccctgtcattagtgaaaatcaaacagttgatagacttgtggctgaagaaggacctattaccctaagcaaagatgaaaaattgcaatctgcatcagcgactaagttagaggagagtgacgaagaggatgctgatgattggttgaaggaagaaaacacgggaaatacaggtaccagtaaaaccaccatgtcttttgaggatgatgaggatgtgtctttcagtgatcttgaagaggatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="99617" stop="103456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99917" g_stop="100143" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100144" i_stop="101123" i_length="980">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101124" g_stop="101314" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="418" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101315" i_stop="102688" i_length="1374">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102689" g_stop="103156" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="886" r_length="468" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E700217" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>886</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99917" e_stop="100143"/>
          <exon e_start="101124" e_stop="101314"/>
          <exon e_start="102689" e_stop="103156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAGTGGGATATCTAAGCTTTCGAAGAATATTCCCGTGTCGGAAATCACCAAAATGGCGTCCAACTTACTGCAACTGGGACCGGAGGAGGAAGAAGATAAGAGGTTTGATTCAGGTAGAGGTGCAGTTGGTGTTACTGAGGAAGTAGTGGCTTTTGTGAGGGACATTGCTATGCATCCTGAGACATGGTTGGATTTCCCTTTGTTCGAGGATGAAGATGACGAAGGTGTCTTTTTATTGTTCCTTTTAGATGTTCACCTAATTTTAAGCCTGTACTTTGTGCTTTCATTGCAATTTTTCTTACTCATATCAATACTCACTACTTGTGCAAAACTGATTTTGGTTATTAGAATGCTCTATAATGAATCTTTGACATCGATATAATAGTTTGGACTGCTCAATGCGTAGGTGCCACACAACCTGACTTGAACATGGAAGATTTTCCTCTCTTAGGCGAAGATGATATGAAACTAACTGTTTGATAACAAGCAGATTTCAAAGGTTAAATATACTCTTGGAGATTTGTAGCTTGGAAATAGATCACTCATCAATCCACACTGGCCTTAAAACTGAAAACACTTTAATTACTAGGTAGCAGCTTCAAAGATAGAAAAAAATGGAAGCTTTATTTAGGTTTCAATTTGATTATTGCAGGATTCAAGGTAAAGAATGAAATGCTTGTTTGAATACTTGAAAGTAGAGTGGTAAAGTTTCTAACTTTGTGAATATATCTTTCGGATGTGCAGAGTCAAACAGATGCTTGTTTATGTGTATTTCATGGTGAAACATAAACCTCCGGGTGTTTCCGTGACTGCCCTTTCATATAACGATGACTTTCCTTATCAAAGAAATATATATATCACGATGACTTAGGTCATATATGTACTTGTTCACCCTGAAGTGGATGAGCAAGATGCTGAAATTCTATTAATATATATATATATATTTTATTGTTGTAAGTTTTATTAATACTCCCATTATGATGGTGACATGGAAATATGTCGACTCCCTTTCTCACTTTTATTTTCTTATCTGTGTCCTGTTTTTCTGGTTAATCTCAAAACCCTTACCTAAACTATTGGTTATCATACATGACTGTTACTCTTTCTCACTTATGTGACTGTCAGTACATTATTGTGTAATGTATGCTCTGCGAGACGTATATTTAAAGATGGAATATCTAACATTTCGCTCTATATATTACAGTAGATTTTGACTTGTCTGATGCACAACAAGAGCATGCATTAGCTGTTGAGCGTTTTGCTCCAAGACTGGCTGCTTTGAGGATTGAGCTCTGCCCAGGCTACATGAATGAGGCTCGCTTTTGGGAGATTTACTTTGTTCTTCTGCACCCTAGACTGAATAAACAAGATGCTGAACTTCTATCCACACCCCAGGTAAGGCAGTGCATGTAATGCTATAAATGGTTCCATTTCTCATTTACAATCTATTTAGCACTTTAAATGATGCTCTTTTTATCTCCTTTTATAAATGAAAAAAATGCTTTATCGACAAAAGTAGTAAAAGACAGTCCATGCACAACTTACTGTTTTTTGAATCATTGTCTCTGATAACGATTGGCACTACTTACTGGTTCCTAATGAGTAGAATGTAGTTTAATGGATACGTTGTTGGACCTGGAGAAAGGCTGATTAGGATTTAATGAATGGAAGGTCACTTGCTAAATCTTTCTTTGTTTCGAGTTAGTCAAATCTTCCACACCTTTTTTCTATTTGATATGGTTGGCCATTCACTCATGTAGTTCCCATCAAGGTCATTTTTGTCTGGGCTGGTTATGAAATAAGAATTGAAGTTTTTATAGTAGAAGTGGGACTAATATGTGTACAGCTCTTACTGTGAAGTAGCTCTTGTGTTGTTGTGTTACTATTTATAATGGATGATTAAGTATTAAAGAGCAGAAGGAGAAATATCCTTATGAAAAATGGATAGAGATGGGACTATTCTAAACAGAAAAGTTATTGTGGGTTTGGAAAAAACATTTTCAAATCATAGTTATTTATGGGGTTTAGAGAATTGGCCTGGTCTCATCTGATTCTAGGGTAACAACTCTTATACAGAAGTAATTATTTCTTTCTGGTAATATGTATGGGTCAGAATAGTTTTTTCTCTAGTGAGAAGATTTTATGAAACCAATGCCAGTATTGCTGTAGCTAGTATTTAAACAATCCATCAGAGCTTAGAGATTATTCATTTTCCCATTTCCGACTCATTGCTATTTTTGGGACTTTACTCCTGTACATGTTCAGCATATTGATGTCATATTGACACCTCGCTATTCAGGGGAGCTAGTCAAAACATCTTCCTACCTATCTTTTTGCATCAAATCCTTCTTTTATTGTTTTGCTGCTTATGTTGCTACTTGGAAATTCTTCTTCTCTTCTTTTTAGCAGTTGAAAGCTTCAAGGTTGTATTTTTTTATCATTACTATTGGTATTTTCTGGTGAGCGTCCTATTGACATTTTTGGGCTTCTTGTGAACCCCCTGGACCCCTAATGTGTACCGTAAACATGTATTTTTCAGTAGTTGTGCATTTGGATGAGTAGGGAGGGAAATTATACTCTATCCATCTATATATAATGAGTATGAAACCAATAGTAAAACAGAGTGATTGCGCATATGCTTGGTTAGTTAGCATATGAACAAAGCATGCCTTCTAAAAAGTAGTCTACAGTTCACTAATCCTTTATTTCTTGTACTAGAGAATAGTTATTGGTAACATTTGGTGCTGAAAATGCTAATCCTGTGTGCAGGTATTCAATGCCAGGGCCTCATTATCGCAAGAGTTACAAAAACGAACCAAGCCAATAGAAGGAGATTGGTCAAAGGAGGAGACTTTTAAATCAACTGACGGGGGTGGTTCTCAACATGAGGAGATGCTTACTGTCCCTTCTGCTCCGCTCTCCGCGGATGCGGTTCAAGACATGTCTAGTGTGGATGTTTCCTCTTTATCTGTAGTGGTCGGCTCTGGTACCGATGTGCACCCTGTCATTAGTGAAAATCAAACAGTTGATAGACTTGTGGCTGAAGAAGGACCTATTACCCTAAGCAAAGATGAAAAATTGCAATCTGCATCAGCGACTAAGTTAGAGGAGAGTGACGAAGAGGATGCTGATGATTGGTTGAAGGAAGAAAACACGGAAATTACAGGTACCAGTAAAACCACCATGTCTTTTGAGGATGATGAGGATGTGTCTTTCAGTGATCTTGAAGAGGATGAT</genome_strand>
        <mrna_strand>CAAGAGTGGGATATCTAAGCTTTCGAAGAATATTCCCGTGTCGGAAATCACCAAAATGGCGTCCAACTTACTGCAACTGGGACCGGAGGAGGAAGAAGATAAGAGGTTTGATTCAGGTAGAGGTGCAGTTGGTGTTACTGAGGAAGTAGTGGCTTTTGTGAGGGACATTGCTATGCATCCTGAGACATGGTTGGATTTCCCTTTGTTCGAGGATGAAGATGACGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTTTGACTTGTCTGATGCACAACAAGAGCATGCATTAGCTGTTGAGCGTTTTGCTCCAAGACTGGCTGCTTTGAGGATTGAGCTCTGCCCAGGCTACATGAATGAGGCTCGCTTTTGGGAGATTTACTTTGTTCTTCTGCACCCTAGACTGAATAAACAAGATGCTGAACTTCTATCCACACCCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCAATGCCAGGGCCTCATTATCGCAAGAGTTACAAAAACGAACCAAGCCAATAGAAGGAGATTGGTCAAAGGAGGAGACTTTTAAATCAACTGACGGGGGTGGTTCTCAACATGAGGAGATGCTTACTGTCCCTTCTGCTCCGCTCTCCGCGGATGCGGTTCAAGACATGTCTAGTGTGGATGTTTCCTCTTTATCTGTAGTGGTCGGCTCTGGTACCGATGTGCACCCTGTCATTAGTGAAAATCAAACAGTTGATAGACTTGTGGCTGAAGAAGGACCTATTACCCTAAGCAAAGATGAAAAATTGCAATCTGCATCAGCGACTAAGTTAGAGGAGAGTGACGAAGAGGATGCTGATGATTGGTTGAAGGAAGAAAACACGGGAAATACAGGTACCAGTAAAACCACCATGTCTTTTGAGGATGATGAGGATGTGTCTTTCAGTGATCTTGAAGAGGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E538091" ref_strand="+" ref_description="SGN-E538091 [TUS-57-A16]">
      <seq>tgggaccggaggaggaagaagataagaggtttgattcaggtagaggtgcagttggtgttactgaggaagtagtggcttttgtgagggacattgctatgcatcctgagacatggttggatttccctttgttcgaggatgaagatgacgaagtagattttgacttgtctgatgcacaacaagagcatgcattagctgttgagcgttttgctccaagactggctgctttgaggattgagctctgcccaggctacatgaatgaggctcgcttttgggagatttactttgttcttctgcaccctagactgaataaacaagatgctgaacttctatccacaccccaggtattcaatgccagggcctcattatcgcaagagttacaaaaacgaaccaagccaatagaaggagattggtcaaaggaggagacttttaaatcaactgacgggggtggttctcaacatgaggagatgcttactgtcccttctgctccgctctccgcggatgcggttcaagacatgtctagtgtggatgtttcctctttatctgtagtggtcggctctggtaccgatgtgcaccctgtcattagtgaaaatcaaacagttgatagacttgtggctgaagaaggacctattaccctaagcaaagatgaaaaattgcaatctgcatcagcgactaagttagaggagagtgacgaagaggatgctgatgattggttgaaggaagaaacacggaaattacaggtaccagtaaaaccaccatgtcttttgaggatgatgaggatgtgtctttcagtgatcttgaagaagatgattcagatatgcctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="99694" stop="103470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99994" g_stop="100143" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100144" i_stop="101123" i_length="980">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101124" g_stop="101314" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="341" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101315" i_stop="102688" i_length="1374">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102689" g_stop="103170" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="822" r_length="481" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E538091" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538091" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99994" e_stop="100143"/>
          <exon e_start="101124" e_stop="101314"/>
          <exon e_start="102689" e_stop="103170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGACCGGAGGAGGAAGAAGATAAGAGGTTTGATTCAGGTAGAGGTGCAGTTGGTGTTACTGAGGAAGTAGTGGCTTTTGTGAGGGACATTGCTATGCATCCTGAGACATGGTTGGATTTCCCTTTGTTCGAGGATGAAGATGACGAAGGTGTCTTTTTATTGTTCCTTTTAGATGTTCACCTAATTTTAAGCCTGTACTTTGTGCTTTCATTGCAATTTTTCTTACTCATATCAATACTCACTACTTGTGCAAAACTGATTTTGGTTATTAGAATGCTCTATAATGAATCTTTGACATCGATATAATAGTTTGGACTGCTCAATGCGTAGGTGCCACACAACCTGACTTGAACATGGAAGATTTTCCTCTCTTAGGCGAAGATGATATGAAACTAACTGTTTGATAACAAGCAGATTTCAAAGGTTAAATATACTCTTGGAGATTTGTAGCTTGGAAATAGATCACTCATCAATCCACACTGGCCTTAAAACTGAAAACACTTTAATTACTAGGTAGCAGCTTCAAAGATAGAAAAAAATGGAAGCTTTATTTAGGTTTCAATTTGATTATTGCAGGATTCAAGGTAAAGAATGAAATGCTTGTTTGAATACTTGAAAGTAGAGTGGTAAAGTTTCTAACTTTGTGAATATATCTTTCGGATGTGCAGAGTCAAACAGATGCTTGTTTATGTGTATTTCATGGTGAAACATAAACCTCCGGGTGTTTCCGTGACTGCCCTTTCATATAACGATGACTTTCCTTATCAAAGAAATATATATATCACGATGACTTAGGTCATATATGTACTTGTTCACCCTGAAGTGGATGAGCAAGATGCTGAAATTCTATTAATATATATATATATATTTTATTGTTGTAAGTTTTATTAATACTCCCATTATGATGGTGACATGGAAATATGTCGACTCCCTTTCTCACTTTTATTTTCTTATCTGTGTCCTGTTTTTCTGGTTAATCTCAAAACCCTTACCTAAACTATTGGTTATCATACATGACTGTTACTCTTTCTCACTTATGTGACTGTCAGTACATTATTGTGTAATGTATGCTCTGCGAGACGTATATTTAAAGATGGAATATCTAACATTTCGCTCTATATATTACAGTAGATTTTGACTTGTCTGATGCACAACAAGAGCATGCATTAGCTGTTGAGCGTTTTGCTCCAAGACTGGCTGCTTTGAGGATTGAGCTCTGCCCAGGCTACATGAATGAGGCTCGCTTTTGGGAGATTTACTTTGTTCTTCTGCACCCTAGACTGAATAAACAAGATGCTGAACTTCTATCCACACCCCAGGTAAGGCAGTGCATGTAATGCTATAAATGGTTCCATTTCTCATTTACAATCTATTTAGCACTTTAAATGATGCTCTTTTTATCTCCTTTTATAAATGAAAAAAATGCTTTATCGACAAAAGTAGTAAAAGACAGTCCATGCACAACTTACTGTTTTTTGAATCATTGTCTCTGATAACGATTGGCACTACTTACTGGTTCCTAATGAGTAGAATGTAGTTTAATGGATACGTTGTTGGACCTGGAGAAAGGCTGATTAGGATTTAATGAATGGAAGGTCACTTGCTAAATCTTTCTTTGTTTCGAGTTAGTCAAATCTTCCACACCTTTTTTCTATTTGATATGGTTGGCCATTCACTCATGTAGTTCCCATCAAGGTCATTTTTGTCTGGGCTGGTTATGAAATAAGAATTGAAGTTTTTATAGTAGAAGTGGGACTAATATGTGTACAGCTCTTACTGTGAAGTAGCTCTTGTGTTGTTGTGTTACTATTTATAATGGATGATTAAGTATTAAAGAGCAGAAGGAGAAATATCCTTATGAAAAATGGATAGAGATGGGACTATTCTAAACAGAAAAGTTATTGTGGGTTTGGAAAAAACATTTTCAAATCATAGTTATTTATGGGGTTTAGAGAATTGGCCTGGTCTCATCTGATTCTAGGGTAACAACTCTTATACAGAAGTAATTATTTCTTTCTGGTAATATGTATGGGTCAGAATAGTTTTTTCTCTAGTGAGAAGATTTTATGAAACCAATGCCAGTATTGCTGTAGCTAGTATTTAAACAATCCATCAGAGCTTAGAGATTATTCATTTTCCCATTTCCGACTCATTGCTATTTTTGGGACTTTACTCCTGTACATGTTCAGCATATTGATGTCATATTGACACCTCGCTATTCAGGGGAGCTAGTCAAAACATCTTCCTACCTATCTTTTTGCATCAAATCCTTCTTTTATTGTTTTGCTGCTTATGTTGCTACTTGGAAATTCTTCTTCTCTTCTTTTTAGCAGTTGAAAGCTTCAAGGTTGTATTTTTTTATCATTACTATTGGTATTTTCTGGTGAGCGTCCTATTGACATTTTTGGGCTTCTTGTGAACCCCCTGGACCCCTAATGTGTACCGTAAACATGTATTTTTCAGTAGTTGTGCATTTGGATGAGTAGGGAGGGAAATTATACTCTATCCATCTATATATAATGAGTATGAAACCAATAGTAAAACAGAGTGATTGCGCATATGCTTGGTTAGTTAGCATATGAACAAAGCATGCCTTCTAAAAAGTAGTCTACAGTTCACTAATCCTTTATTTCTTGTACTAGAGAATAGTTATTGGTAACATTTGGTGCTGAAAATGCTAATCCTGTGTGCAGGTATTCAATGCCAGGGCCTCATTATCGCAAGAGTTACAAAAACGAACCAAGCCAATAGAAGGAGATTGGTCAAAGGAGGAGACTTTTAAATCAACTGACGGGGGTGGTTCTCAACATGAGGAGATGCTTACTGTCCCTTCTGCTCCGCTCTCCGCGGATGCGGTTCAAGACATGTCTAGTGTGGATGTTTCCTCTTTATCTGTAGTGGTCGGCTCTGGTACCGATGTGCACCCTGTCATTAGTGAAAATCAAACAGTTGATAGACTTGTGGCTGAAGAAGGACCTATTACCCTAAGCAAAGATGAAAAATTGCAATCTGCATCAGCGACTAAGTTAGAGGAGAGTGACGAAGAGGATGCTGATGATTGGTTGAAGGAAGAAAACACGGAAATTACAGGTACCAGTAAAACCACCATGTCTTTTGAGGATGATGAGGATGTGTCTTTCAGTGATCTTGAAGAGGATGATTCAGATATGCCTGC</genome_strand>
        <mrna_strand>TGGGACCGGAGGAGGAAGAAGATAAGAGGTTTGATTCAGGTAGAGGTGCAGTTGGTGTTACTGAGGAAGTAGTGGCTTTTGTGAGGGACATTGCTATGCATCCTGAGACATGGTTGGATTTCCCTTTGTTCGAGGATGAAGATGACGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTTTGACTTGTCTGATGCACAACAAGAGCATGCATTAGCTGTTGAGCGTTTTGCTCCAAGACTGGCTGCTTTGAGGATTGAGCTCTGCCCAGGCTACATGAATGAGGCTCGCTTTTGGGAGATTTACTTTGTTCTTCTGCACCCTAGACTGAATAAACAAGATGCTGAACTTCTATCCACACCCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCAATGCCAGGGCCTCATTATCGCAAGAGTTACAAAAACGAACCAAGCCAATAGAAGGAGATTGGTCAAAGGAGGAGACTTTTAAATCAACTGACGGGGGTGGTTCTCAACATGAGGAGATGCTTACTGTCCCTTCTGCTCCGCTCTCCGCGGATGCGGTTCAAGACATGTCTAGTGTGGATGTTTCCTCTTTATCTGTAGTGGTCGGCTCTGGTACCGATGTGCACCCTGTCATTAGTGAAAATCAAACAGTTGATAGACTTGTGGCTGAAGAAGGACCTATTACCCTAAGCAAAGATGAAAAATTGCAATCTGCATCAGCGACTAAGTTAGAGGAGAGTGACGAAGAGGATGCTGATGATTGGTTGAAGGAAG-AAACACGGAAATTACAGGTACCAGTAAAACCACCATGTCTTTTGAGGATGATGAGGATGTGTCTTTCAGTGATCTTGAAGAAGATGATTCAGATATGCCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E537491" ref_strand="+" ref_description="SGN-E537491 [TUS-56-B22]">
      <seq>tgggaccggaggaggaagaagataagaggtttgattcaggtagaggtgcagttggtgttactgaggaagtagtggcttttgtgagggacattgctatgcatcctgagacatggttggatttccctttgttcgaggatgaagatgacgaagtagattttgacttgtctgatgcacaacaagagcatgcattagctgttgagcgttttgctccaagactggctgctttgaggattgagctctgcccaggctacatgaatgaggctcgcttttgggagatttactttgttcttctgcaccctagactgaataaacaagatgctgaacttctatccacaccccaggtattcaatgccagggcctcattatcgcaagagttacaaaaacgaaccaagccaatagaaggagattggtcaaaggaggagacttttaaatcaactgacgggggtggttctcaacatgaggagatgcttactgtcccttctgctccgctctccgcggatgcggttcaagacatgtctagtgtggatgtttcctctttatctgtagtggtcggctctggtaccgatgtgcaccctgtcattagtgaaaatcaaacagttgatagacttgtggctgaagaaggacctattaccctaagcaaagatgaaaaattgcaatctgcatcagcgactaagttagaggagagtgacgaagaggatgctgatgattggttgaaggaagaaacacggaaattacaggtaccagtaaaaccaccatgtctttttgagatgatgaggatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="99694" stop="103429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99994" g_stop="100143" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100144" i_stop="101123" i_length="980">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101124" g_stop="101314" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="341" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101315" i_stop="102688" i_length="1374">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102689" g_stop="103129" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="781" r_length="440" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E537491" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99994" e_stop="100143"/>
          <exon e_start="101124" e_stop="101314"/>
          <exon e_start="102689" e_stop="103129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGACCGGAGGAGGAAGAAGATAAGAGGTTTGATTCAGGTAGAGGTGCAGTTGGTGTTACTGAGGAAGTAGTGGCTTTTGTGAGGGACATTGCTATGCATCCTGAGACATGGTTGGATTTCCCTTTGTTCGAGGATGAAGATGACGAAGGTGTCTTTTTATTGTTCCTTTTAGATGTTCACCTAATTTTAAGCCTGTACTTTGTGCTTTCATTGCAATTTTTCTTACTCATATCAATACTCACTACTTGTGCAAAACTGATTTTGGTTATTAGAATGCTCTATAATGAATCTTTGACATCGATATAATAGTTTGGACTGCTCAATGCGTAGGTGCCACACAACCTGACTTGAACATGGAAGATTTTCCTCTCTTAGGCGAAGATGATATGAAACTAACTGTTTGATAACAAGCAGATTTCAAAGGTTAAATATACTCTTGGAGATTTGTAGCTTGGAAATAGATCACTCATCAATCCACACTGGCCTTAAAACTGAAAACACTTTAATTACTAGGTAGCAGCTTCAAAGATAGAAAAAAATGGAAGCTTTATTTAGGTTTCAATTTGATTATTGCAGGATTCAAGGTAAAGAATGAAATGCTTGTTTGAATACTTGAAAGTAGAGTGGTAAAGTTTCTAACTTTGTGAATATATCTTTCGGATGTGCAGAGTCAAACAGATGCTTGTTTATGTGTATTTCATGGTGAAACATAAACCTCCGGGTGTTTCCGTGACTGCCCTTTCATATAACGATGACTTTCCTTATCAAAGAAATATATATATCACGATGACTTAGGTCATATATGTACTTGTTCACCCTGAAGTGGATGAGCAAGATGCTGAAATTCTATTAATATATATATATATATTTTATTGTTGTAAGTTTTATTAATACTCCCATTATGATGGTGACATGGAAATATGTCGACTCCCTTTCTCACTTTTATTTTCTTATCTGTGTCCTGTTTTTCTGGTTAATCTCAAAACCCTTACCTAAACTATTGGTTATCATACATGACTGTTACTCTTTCTCACTTATGTGACTGTCAGTACATTATTGTGTAATGTATGCTCTGCGAGACGTATATTTAAAGATGGAATATCTAACATTTCGCTCTATATATTACAGTAGATTTTGACTTGTCTGATGCACAACAAGAGCATGCATTAGCTGTTGAGCGTTTTGCTCCAAGACTGGCTGCTTTGAGGATTGAGCTCTGCCCAGGCTACATGAATGAGGCTCGCTTTTGGGAGATTTACTTTGTTCTTCTGCACCCTAGACTGAATAAACAAGATGCTGAACTTCTATCCACACCCCAGGTAAGGCAGTGCATGTAATGCTATAAATGGTTCCATTTCTCATTTACAATCTATTTAGCACTTTAAATGATGCTCTTTTTATCTCCTTTTATAAATGAAAAAAATGCTTTATCGACAAAAGTAGTAAAAGACAGTCCATGCACAACTTACTGTTTTTTGAATCATTGTCTCTGATAACGATTGGCACTACTTACTGGTTCCTAATGAGTAGAATGTAGTTTAATGGATACGTTGTTGGACCTGGAGAAAGGCTGATTAGGATTTAATGAATGGAAGGTCACTTGCTAAATCTTTCTTTGTTTCGAGTTAGTCAAATCTTCCACACCTTTTTTCTATTTGATATGGTTGGCCATTCACTCATGTAGTTCCCATCAAGGTCATTTTTGTCTGGGCTGGTTATGAAATAAGAATTGAAGTTTTTATAGTAGAAGTGGGACTAATATGTGTACAGCTCTTACTGTGAAGTAGCTCTTGTGTTGTTGTGTTACTATTTATAATGGATGATTAAGTATTAAAGAGCAGAAGGAGAAATATCCTTATGAAAAATGGATAGAGATGGGACTATTCTAAACAGAAAAGTTATTGTGGGTTTGGAAAAAACATTTTCAAATCATAGTTATTTATGGGGTTTAGAGAATTGGCCTGGTCTCATCTGATTCTAGGGTAACAACTCTTATACAGAAGTAATTATTTCTTTCTGGTAATATGTATGGGTCAGAATAGTTTTTTCTCTAGTGAGAAGATTTTATGAAACCAATGCCAGTATTGCTGTAGCTAGTATTTAAACAATCCATCAGAGCTTAGAGATTATTCATTTTCCCATTTCCGACTCATTGCTATTTTTGGGACTTTACTCCTGTACATGTTCAGCATATTGATGTCATATTGACACCTCGCTATTCAGGGGAGCTAGTCAAAACATCTTCCTACCTATCTTTTTGCATCAAATCCTTCTTTTATTGTTTTGCTGCTTATGTTGCTACTTGGAAATTCTTCTTCTCTTCTTTTTAGCAGTTGAAAGCTTCAAGGTTGTATTTTTTTATCATTACTATTGGTATTTTCTGGTGAGCGTCCTATTGACATTTTTGGGCTTCTTGTGAACCCCCTGGACCCCTAATGTGTACCGTAAACATGTATTTTTCAGTAGTTGTGCATTTGGATGAGTAGGGAGGGAAATTATACTCTATCCATCTATATATAATGAGTATGAAACCAATAGTAAAACAGAGTGATTGCGCATATGCTTGGTTAGTTAGCATATGAACAAAGCATGCCTTCTAAAAAGTAGTCTACAGTTCACTAATCCTTTATTTCTTGTACTAGAGAATAGTTATTGGTAACATTTGGTGCTGAAAATGCTAATCCTGTGTGCAGGTATTCAATGCCAGGGCCTCATTATCGCAAGAGTTACAAAAACGAACCAAGCCAATAGAAGGAGATTGGTCAAAGGAGGAGACTTTTAAATCAACTGACGGGGGTGGTTCTCAACATGAGGAGATGCTTACTGTCCCTTCTGCTCCGCTCTCCGCGGATGCGGTTCAAGACATGTCTAGTGTGGATGTTTCCTCTTTATCTGTAGTGGTCGGCTCTGGTACCGATGTGCACCCTGTCATTAGTGAAAATCAAACAGTTGATAGACTTGTGGCTGAAGAAGGACCTATTACCCTAAGCAAAGATGAAAAATTGCAATCTGCATCAGCGACTAAGTTAGAGGAGAGTGACGAAGAGGATGCTGATGATTGGTTGAAGGAAGAAAACACGGAAATTACAGGTACCAGTAAAACCACCATGTCTTTTGAGGATGATGAGGATGTG</genome_strand>
        <mrna_strand>TGGGACCGGAGGAGGAAGAAGATAAGAGGTTTGATTCAGGTAGAGGTGCAGTTGGTGTTACTGAGGAAGTAGTGGCTTTTGTGAGGGACATTGCTATGCATCCTGAGACATGGTTGGATTTCCCTTTGTTCGAGGATGAAGATGACGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTTTGACTTGTCTGATGCACAACAAGAGCATGCATTAGCTGTTGAGCGTTTTGCTCCAAGACTGGCTGCTTTGAGGATTGAGCTCTGCCCAGGCTACATGAATGAGGCTCGCTTTTGGGAGATTTACTTTGTTCTTCTGCACCCTAGACTGAATAAACAAGATGCTGAACTTCTATCCACACCCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCAATGCCAGGGCCTCATTATCGCAAGAGTTACAAAAACGAACCAAGCCAATAGAAGGAGATTGGTCAAAGGAGGAGACTTTTAAATCAACTGACGGGGGTGGTTCTCAACATGAGGAGATGCTTACTGTCCCTTCTGCTCCGCTCTCCGCGGATGCGGTTCAAGACATGTCTAGTGTGGATGTTTCCTCTTTATCTGTAGTGGTCGGCTCTGGTACCGATGTGCACCCTGTCATTAGTGAAAATCAAACAGTTGATAGACTTGTGGCTGAAGAAGGACCTATTACCCTAAGCAAAGATGAAAAATTGCAATCTGCATCAGCGACTAAGTTAGAGGAGAGTGACGAAGAGGATGCTGATGATTGGTTGAAGGAAG-AAACACGGAAATTACAGGTACCAGTAAAACCACCATGTCTTTTTGAGATGATGAGGATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266313" ref_strand="+" ref_description="SGN-E266313 [cLEI-3-L14]">
      <seq>gggaccggaggaggaagaagataagaggtttgattcaggtagaggtgcagttggtgttactgaggaagtagtggcttttgtgagggacattgctatgcatcctgagacatggttggatttccctttgttcgaggatgaagatgacgaagtagattttgacttgtctgatgcacaacaagagcatgcattagctgttgagcgttttgctccaagactggctgctttgaggattgagctctgcccaggctacatgaatgaggctcgcttttgggagatttactttgttcttctgcaccctagactgaataaacaagatgctgaacttctatccacaccccaggtattcaatgccagggcctcattatcgcaagagttacaaaaacgaaccaagccaatagaaggagattggtcaaaggaggagacttttaaatcaactgacgggggtggttctcaacatgaggagatgcttactgtcccttctgctccgctctccgcggatgcggttcaagacatgtctagnggtgatgtttcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="99695" stop="103182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99995" g_stop="100143" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100144" i_stop="101123" i_length="980">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101124" g_stop="101314" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="340" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101315" i_stop="102688" i_length="1374">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102689" g_stop="102882" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="534" r_length="194" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E266313" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99995" e_stop="100143"/>
          <exon e_start="101124" e_stop="101314"/>
          <exon e_start="102689" e_stop="102882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGACCGGAGGAGGAAGAAGATAAGAGGTTTGATTCAGGTAGAGGTGCAGTTGGTGTTACTGAGGAAGTAGTGGCTTTTGTGAGGGACATTGCTATGCATCCTGAGACATGGTTGGATTTCCCTTTGTTCGAGGATGAAGATGACGAAGGTGTCTTTTTATTGTTCCTTTTAGATGTTCACCTAATTTTAAGCCTGTACTTTGTGCTTTCATTGCAATTTTTCTTACTCATATCAATACTCACTACTTGTGCAAAACTGATTTTGGTTATTAGAATGCTCTATAATGAATCTTTGACATCGATATAATAGTTTGGACTGCTCAATGCGTAGGTGCCACACAACCTGACTTGAACATGGAAGATTTTCCTCTCTTAGGCGAAGATGATATGAAACTAACTGTTTGATAACAAGCAGATTTCAAAGGTTAAATATACTCTTGGAGATTTGTAGCTTGGAAATAGATCACTCATCAATCCACACTGGCCTTAAAACTGAAAACACTTTAATTACTAGGTAGCAGCTTCAAAGATAGAAAAAAATGGAAGCTTTATTTAGGTTTCAATTTGATTATTGCAGGATTCAAGGTAAAGAATGAAATGCTTGTTTGAATACTTGAAAGTAGAGTGGTAAAGTTTCTAACTTTGTGAATATATCTTTCGGATGTGCAGAGTCAAACAGATGCTTGTTTATGTGTATTTCATGGTGAAACATAAACCTCCGGGTGTTTCCGTGACTGCCCTTTCATATAACGATGACTTTCCTTATCAAAGAAATATATATATCACGATGACTTAGGTCATATATGTACTTGTTCACCCTGAAGTGGATGAGCAAGATGCTGAAATTCTATTAATATATATATATATATTTTATTGTTGTAAGTTTTATTAATACTCCCATTATGATGGTGACATGGAAATATGTCGACTCCCTTTCTCACTTTTATTTTCTTATCTGTGTCCTGTTTTTCTGGTTAATCTCAAAACCCTTACCTAAACTATTGGTTATCATACATGACTGTTACTCTTTCTCACTTATGTGACTGTCAGTACATTATTGTGTAATGTATGCTCTGCGAGACGTATATTTAAAGATGGAATATCTAACATTTCGCTCTATATATTACAGTAGATTTTGACTTGTCTGATGCACAACAAGAGCATGCATTAGCTGTTGAGCGTTTTGCTCCAAGACTGGCTGCTTTGAGGATTGAGCTCTGCCCAGGCTACATGAATGAGGCTCGCTTTTGGGAGATTTACTTTGTTCTTCTGCACCCTAGACTGAATAAACAAGATGCTGAACTTCTATCCACACCCCAGGTAAGGCAGTGCATGTAATGCTATAAATGGTTCCATTTCTCATTTACAATCTATTTAGCACTTTAAATGATGCTCTTTTTATCTCCTTTTATAAATGAAAAAAATGCTTTATCGACAAAAGTAGTAAAAGACAGTCCATGCACAACTTACTGTTTTTTGAATCATTGTCTCTGATAACGATTGGCACTACTTACTGGTTCCTAATGAGTAGAATGTAGTTTAATGGATACGTTGTTGGACCTGGAGAAAGGCTGATTAGGATTTAATGAATGGAAGGTCACTTGCTAAATCTTTCTTTGTTTCGAGTTAGTCAAATCTTCCACACCTTTTTTCTATTTGATATGGTTGGCCATTCACTCATGTAGTTCCCATCAAGGTCATTTTTGTCTGGGCTGGTTATGAAATAAGAATTGAAGTTTTTATAGTAGAAGTGGGACTAATATGTGTACAGCTCTTACTGTGAAGTAGCTCTTGTGTTGTTGTGTTACTATTTATAATGGATGATTAAGTATTAAAGAGCAGAAGGAGAAATATCCTTATGAAAAATGGATAGAGATGGGACTATTCTAAACAGAAAAGTTATTGTGGGTTTGGAAAAAACATTTTCAAATCATAGTTATTTATGGGGTTTAGAGAATTGGCCTGGTCTCATCTGATTCTAGGGTAACAACTCTTATACAGAAGTAATTATTTCTTTCTGGTAATATGTATGGGTCAGAATAGTTTTTTCTCTAGTGAGAAGATTTTATGAAACCAATGCCAGTATTGCTGTAGCTAGTATTTAAACAATCCATCAGAGCTTAGAGATTATTCATTTTCCCATTTCCGACTCATTGCTATTTTTGGGACTTTACTCCTGTACATGTTCAGCATATTGATGTCATATTGACACCTCGCTATTCAGGGGAGCTAGTCAAAACATCTTCCTACCTATCTTTTTGCATCAAATCCTTCTTTTATTGTTTTGCTGCTTATGTTGCTACTTGGAAATTCTTCTTCTCTTCTTTTTAGCAGTTGAAAGCTTCAAGGTTGTATTTTTTTATCATTACTATTGGTATTTTCTGGTGAGCGTCCTATTGACATTTTTGGGCTTCTTGTGAACCCCCTGGACCCCTAATGTGTACCGTAAACATGTATTTTTCAGTAGTTGTGCATTTGGATGAGTAGGGAGGGAAATTATACTCTATCCATCTATATATAATGAGTATGAAACCAATAGTAAAACAGAGTGATTGCGCATATGCTTGGTTAGTTAGCATATGAACAAAGCATGCCTTCTAAAAAGTAGTCTACAGTTCACTAATCCTTTATTTCTTGTACTAGAGAATAGTTATTGGTAACATTTGGTGCTGAAAATGCTAATCCTGTGTGCAGGTATTCAATGCCAGGGCCTCATTATCGCAAGAGTTACAAAAACGAACCAAGCCAATAGAAGGAGATTGGTCAAAGGAGGAGACTTTTAAATCAACTGACGGGGGTGGTTCTCAACATGAGGAGATGCTTACTGTCCCTTCTGCTCCGCTCTCCGCGGATGCGGTTCAAGACATGTCTAGTGTGGATGTTTCCTC</genome_strand>
        <mrna_strand>GGGACCGGAGGAGGAAGAAGATAAGAGGTTTGATTCAGGTAGAGGTGCAGTTGGTGTTACTGAGGAAGTAGTGGCTTTTGTGAGGGACATTGCTATGCATCCTGAGACATGGTTGGATTTCCCTTTGTTCGAGGATGAAGATGACGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTTTGACTTGTCTGATGCACAACAAGAGCATGCATTAGCTGTTGAGCGTTTTGCTCCAAGACTGGCTGCTTTGAGGATTGAGCTCTGCCCAGGCTACATGAATGAGGCTCGCTTTTGGGAGATTTACTTTGTTCTTCTGCACCCTAGACTGAATAAACAAGATGCTGAACTTCTATCCACACCCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCAATGCCAGGGCCTCATTATCGCAAGAGTTACAAAAACGAACCAAGCCAATAGAAGGAGATTGGTCAAAGGAGGAGACTTTTAAATCAACTGACGGGGGTGGTTCTCAACATGAGGAGATGCTTACTGTCCCTTCTGCTCCGCTCTCCGCGGATGCGGTTCAAGACATGTCTAGNGGTGATGTTTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E405889" ref_strand="+" ref_description="SGN-E405889 [PPI-1-N12]">
      <seq>tttgattccggtagaggtgcagttggtgttactgaggaagtagtggcttttgtgagggacattgctatgcatcctgagacttggttggatttccctttgtttgatgatgaagacgacgaagtagattttgacttgtctgatgcacaacaagagcatgcattagctgtagagcgtcttgctccaagactggctgctttgaggattgagctctgcccaggttacatgagtgaggctcgcttttgggagatttactttgttcttctgcaccctagactggataaacaagatgctgaacttttatccacaccccaggtagtcaaggccagggcgtcattggcgcaagagttacataaacgaaccaagccaatagaaggagattggtcaaaggaggagacttttaaatcaactgacatgggtggttttcaacaggaggagatgcttgctgtcccgtccgctgctctctctgcggttgtggttcaagacatgtctagtgtggatgttggcacttcatctatagtggctagctgtggtaccgatgtgcaccctgtcattagtgaaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="99723" stop="103238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100023" g_stop="100143" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100144" i_stop="101123" i_length="980">
            <donor d_prob="0.988" d_score="0.92"/>
            <acceptor a_prob="0.963" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101124" g_stop="101314" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="312" r_length="191" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101315" i_stop="102688" i_length="1374">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102689" g_stop="102938" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="562" r_length="250" r_score="0.892"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E405889" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E405889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100023" e_stop="100143"/>
          <exon e_start="101124" e_stop="101314"/>
          <exon e_start="102689" e_stop="102938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATTCAGGTAGAGGTGCAGTTGGTGTTACTGAGGAAGTAGTGGCTTTTGTGAGGGACATTGCTATGCATCCTGAGACATGGTTGGATTTCCCTTTGTTCGAGGATGAAGATGACGAAGGTGTCTTTTTATTGTTCCTTTTAGATGTTCACCTAATTTTAAGCCTGTACTTTGTGCTTTCATTGCAATTTTTCTTACTCATATCAATACTCACTACTTGTGCAAAACTGATTTTGGTTATTAGAATGCTCTATAATGAATCTTTGACATCGATATAATAGTTTGGACTGCTCAATGCGTAGGTGCCACACAACCTGACTTGAACATGGAAGATTTTCCTCTCTTAGGCGAAGATGATATGAAACTAACTGTTTGATAACAAGCAGATTTCAAAGGTTAAATATACTCTTGGAGATTTGTAGCTTGGAAATAGATCACTCATCAATCCACACTGGCCTTAAAACTGAAAACACTTTAATTACTAGGTAGCAGCTTCAAAGATAGAAAAAAATGGAAGCTTTATTTAGGTTTCAATTTGATTATTGCAGGATTCAAGGTAAAGAATGAAATGCTTGTTTGAATACTTGAAAGTAGAGTGGTAAAGTTTCTAACTTTGTGAATATATCTTTCGGATGTGCAGAGTCAAACAGATGCTTGTTTATGTGTATTTCATGGTGAAACATAAACCTCCGGGTGTTTCCGTGACTGCCCTTTCATATAACGATGACTTTCCTTATCAAAGAAATATATATATCACGATGACTTAGGTCATATATGTACTTGTTCACCCTGAAGTGGATGAGCAAGATGCTGAAATTCTATTAATATATATATATATATTTTATTGTTGTAAGTTTTATTAATACTCCCATTATGATGGTGACATGGAAATATGTCGACTCCCTTTCTCACTTTTATTTTCTTATCTGTGTCCTGTTTTTCTGGTTAATCTCAAAACCCTTACCTAAACTATTGGTTATCATACATGACTGTTACTCTTTCTCACTTATGTGACTGTCAGTACATTATTGTGTAATGTATGCTCTGCGAGACGTATATTTAAAGATGGAATATCTAACATTTCGCTCTATATATTACAGTAGATTTTGACTTGTCTGATGCACAACAAGAGCATGCATTAGCTGTTGAGCGTTTTGCTCCAAGACTGGCTGCTTTGAGGATTGAGCTCTGCCCAGGCTACATGAATGAGGCTCGCTTTTGGGAGATTTACTTTGTTCTTCTGCACCCTAGACTGAATAAACAAGATGCTGAACTTCTATCCACACCCCAGGTAAGGCAGTGCATGTAATGCTATAAATGGTTCCATTTCTCATTTACAATCTATTTAGCACTTTAAATGATGCTCTTTTTATCTCCTTTTATAAATGAAAAAAATGCTTTATCGACAAAAGTAGTAAAAGACAGTCCATGCACAACTTACTGTTTTTTGAATCATTGTCTCTGATAACGATTGGCACTACTTACTGGTTCCTAATGAGTAGAATGTAGTTTAATGGATACGTTGTTGGACCTGGAGAAAGGCTGATTAGGATTTAATGAATGGAAGGTCACTTGCTAAATCTTTCTTTGTTTCGAGTTAGTCAAATCTTCCACACCTTTTTTCTATTTGATATGGTTGGCCATTCACTCATGTAGTTCCCATCAAGGTCATTTTTGTCTGGGCTGGTTATGAAATAAGAATTGAAGTTTTTATAGTAGAAGTGGGACTAATATGTGTACAGCTCTTACTGTGAAGTAGCTCTTGTGTTGTTGTGTTACTATTTATAATGGATGATTAAGTATTAAAGAGCAGAAGGAGAAATATCCTTATGAAAAATGGATAGAGATGGGACTATTCTAAACAGAAAAGTTATTGTGGGTTTGGAAAAAACATTTTCAAATCATAGTTATTTATGGGGTTTAGAGAATTGGCCTGGTCTCATCTGATTCTAGGGTAACAACTCTTATACAGAAGTAATTATTTCTTTCTGGTAATATGTATGGGTCAGAATAGTTTTTTCTCTAGTGAGAAGATTTTATGAAACCAATGCCAGTATTGCTGTAGCTAGTATTTAAACAATCCATCAGAGCTTAGAGATTATTCATTTTCCCATTTCCGACTCATTGCTATTTTTGGGACTTTACTCCTGTACATGTTCAGCATATTGATGTCATATTGACACCTCGCTATTCAGGGGAGCTAGTCAAAACATCTTCCTACCTATCTTTTTGCATCAAATCCTTCTTTTATTGTTTTGCTGCTTATGTTGCTACTTGGAAATTCTTCTTCTCTTCTTTTTAGCAGTTGAAAGCTTCAAGGTTGTATTTTTTTATCATTACTATTGGTATTTTCTGGTGAGCGTCCTATTGACATTTTTGGGCTTCTTGTGAACCCCCTGGACCCCTAATGTGTACCGTAAACATGTATTTTTCAGTAGTTGTGCATTTGGATGAGTAGGGAGGGAAATTATACTCTATCCATCTATATATAATGAGTATGAAACCAATAGTAAAACAGAGTGATTGCGCATATGCTTGGTTAGTTAGCATATGAACAAAGCATGCCTTCTAAAAAGTAGTCTACAGTTCACTAATCCTTTATTTCTTGTACTAGAGAATAGTTATTGGTAACATTTGGTGCTGAAAATGCTAATCCTGTGTGCAGGTATTCAATGCCAGGGCCTCATTATCGCAAGAGTTACAAAAACGAACCAAGCCAATAGAAGGAGATTGGTCAAAGGAGGAGACTTTTAAATCAACTGACGGGGGTGGTTCTCAACATGAGGAGATGCTTACTGTCCCTTCTGCTCCGCTCTCCGCGGATGCGGTTCAAGACATGTCTAGTGTGGATGTTTCCTCTTTATCTGTAGTGGTCGGCTCTGGTACCGATGTGCACCCTGTCATTAGTGAAAATC</genome_strand>
        <mrna_strand>TTTGATTCCGGTAGAGGTGCAGTTGGTGTTACTGAGGAAGTAGTGGCTTTTGTGAGGGACATTGCTATGCATCCTGAGACTTGGTTGGATTTCCCTTTGTTTGATGATGAAGACGACGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTTTGACTTGTCTGATGCACAACAAGAGCATGCATTAGCTGTAGAGCGTCTTGCTCCAAGACTGGCTGCTTTGAGGATTGAGCTCTGCCCAGGTTACATGAGTGAGGCTCGCTTTTGGGAGATTTACTTTGTTCTTCTGCACCCTAGACTGGATAAACAAGATGCTGAACTTTTATCCACACCCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTCAAGGCCAGGGCGTCATTGGCGCAAGAGTTACATAAACGAACCAAGCCAATAGAAGGAGATTGGTCAAAGGAGGAGACTTTTAAATCAACTGACATGGGTGGTTTTCAACAGGAGGAGATGCTTGCTGTCCCGTCCGCTGCTCTCTCTGCGGTTGTGGTTCAAGACATGTCTAGTGTGGATGTTGGCACTTCATCTATAGTGGCTAGCTGTGGTACCGATGTGCACCCTGTCATTAGTGAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E709603" ref_strand="+" ref_description="SGN-E709603 [FA52CC01]">
      <seq>agggctatgcatcctgagacatggttggatttccctttgttcgaggatgaagatgacgaagattttgacttgtctgatgcacaacaagagcatgcattagctgttgagcgttttgctccaagactggctgctttgaggattgagctctgcccaggctacatgaatgaggctcgcttttgggagatttactttgttcttctgcaccctagactgaataaacaagatgctgaacttctatccacaccccaggtattcaatgccagggcctcattatcgcaagagttacaaaaacgaaccaagccaatagaaggagattggtcaaaggaggagacttttaaatcaactgacgggggtggttctcaacatgaggagatgcttactgtcccttctgctccgctctccgcggatgcggttcaagacatgtctagtgtggatgtttcctctttatctgtagtggtcggctctggtaccgatgtgcaccctgtcattagtgaaaatcaaacagttgatagacttgtggctgaagaaggacctattaccctaagcaaagatgaaaaattgcaatctgcatcagcgactaagttagaggagagtgacgaagaggatgctgatgattggttgaaggaagaaaacacggaaattacaggtaccagtaaaaccaccatgtcttttgaggatgatgaggatgtgtctttcagtgatcttgaagaggatgattcagatatgcctgcaaaatcaaaaaacgcagcttacagctctgataaggactcacaagattgggtccagttgaggaaaagctccaccgacttgtctagagattccagctccatcaatcagattagttctgttaaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="99786" stop="103595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100083" g_stop="100143" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100144" i_stop="101126" i_length="983">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.630" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101127" g_stop="101314" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="249" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101315" i_stop="102688" i_length="1374">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="102689" g_stop="103295" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="856" r_length="607" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E709603" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100083" e_stop="100143"/>
          <exon e_start="101127" e_stop="101314"/>
          <exon e_start="102689" e_stop="103295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCTATGCATCCTGAGACATGGTTGGATTTCCCTTTGTTCGAGGATGAAGATGACGAAGGTGTCTTTTTATTGTTCCTTTTAGATGTTCACCTAATTTTAAGCCTGTACTTTGTGCTTTCATTGCAATTTTTCTTACTCATATCAATACTCACTACTTGTGCAAAACTGATTTTGGTTATTAGAATGCTCTATAATGAATCTTTGACATCGATATAATAGTTTGGACTGCTCAATGCGTAGGTGCCACACAACCTGACTTGAACATGGAAGATTTTCCTCTCTTAGGCGAAGATGATATGAAACTAACTGTTTGATAACAAGCAGATTTCAAAGGTTAAATATACTCTTGGAGATTTGTAGCTTGGAAATAGATCACTCATCAATCCACACTGGCCTTAAAACTGAAAACACTTTAATTACTAGGTAGCAGCTTCAAAGATAGAAAAAAATGGAAGCTTTATTTAGGTTTCAATTTGATTATTGCAGGATTCAAGGTAAAGAATGAAATGCTTGTTTGAATACTTGAAAGTAGAGTGGTAAAGTTTCTAACTTTGTGAATATATCTTTCGGATGTGCAGAGTCAAACAGATGCTTGTTTATGTGTATTTCATGGTGAAACATAAACCTCCGGGTGTTTCCGTGACTGCCCTTTCATATAACGATGACTTTCCTTATCAAAGAAATATATATATCACGATGACTTAGGTCATATATGTACTTGTTCACCCTGAAGTGGATGAGCAAGATGCTGAAATTCTATTAATATATATATATATATTTTATTGTTGTAAGTTTTATTAATACTCCCATTATGATGGTGACATGGAAATATGTCGACTCCCTTTCTCACTTTTATTTTCTTATCTGTGTCCTGTTTTTCTGGTTAATCTCAAAACCCTTACCTAAACTATTGGTTATCATACATGACTGTTACTCTTTCTCACTTATGTGACTGTCAGTACATTATTGTGTAATGTATGCTCTGCGAGACGTATATTTAAAGATGGAATATCTAACATTTCGCTCTATATATTACAGTAGATTTTGACTTGTCTGATGCACAACAAGAGCATGCATTAGCTGTTGAGCGTTTTGCTCCAAGACTGGCTGCTTTGAGGATTGAGCTCTGCCCAGGCTACATGAATGAGGCTCGCTTTTGGGAGATTTACTTTGTTCTTCTGCACCCTAGACTGAATAAACAAGATGCTGAACTTCTATCCACACCCCAGGTAAGGCAGTGCATGTAATGCTATAAATGGTTCCATTTCTCATTTACAATCTATTTAGCACTTTAAATGATGCTCTTTTTATCTCCTTTTATAAATGAAAAAAATGCTTTATCGACAAAAGTAGTAAAAGACAGTCCATGCACAACTTACTGTTTTTTGAATCATTGTCTCTGATAACGATTGGCACTACTTACTGGTTCCTAATGAGTAGAATGTAGTTTAATGGATACGTTGTTGGACCTGGAGAAAGGCTGATTAGGATTTAATGAATGGAAGGTCACTTGCTAAATCTTTCTTTGTTTCGAGTTAGTCAAATCTTCCACACCTTTTTTCTATTTGATATGGTTGGCCATTCACTCATGTAGTTCCCATCAAGGTCATTTTTGTCTGGGCTGGTTATGAAATAAGAATTGAAGTTTTTATAGTAGAAGTGGGACTAATATGTGTACAGCTCTTACTGTGAAGTAGCTCTTGTGTTGTTGTGTTACTATTTATAATGGATGATTAAGTATTAAAGAGCAGAAGGAGAAATATCCTTATGAAAAATGGATAGAGATGGGACTATTCTAAACAGAAAAGTTATTGTGGGTTTGGAAAAAACATTTTCAAATCATAGTTATTTATGGGGTTTAGAGAATTGGCCTGGTCTCATCTGATTCTAGGGTAACAACTCTTATACAGAAGTAATTATTTCTTTCTGGTAATATGTATGGGTCAGAATAGTTTTTTCTCTAGTGAGAAGATTTTATGAAACCAATGCCAGTATTGCTGTAGCTAGTATTTAAACAATCCATCAGAGCTTAGAGATTATTCATTTTCCCATTTCCGACTCATTGCTATTTTTGGGACTTTACTCCTGTACATGTTCAGCATATTGATGTCATATTGACACCTCGCTATTCAGGGGAGCTAGTCAAAACATCTTCCTACCTATCTTTTTGCATCAAATCCTTCTTTTATTGTTTTGCTGCTTATGTTGCTACTTGGAAATTCTTCTTCTCTTCTTTTTAGCAGTTGAAAGCTTCAAGGTTGTATTTTTTTATCATTACTATTGGTATTTTCTGGTGAGCGTCCTATTGACATTTTTGGGCTTCTTGTGAACCCCCTGGACCCCTAATGTGTACCGTAAACATGTATTTTTCAGTAGTTGTGCATTTGGATGAGTAGGGAGGGAAATTATACTCTATCCATCTATATATAATGAGTATGAAACCAATAGTAAAACAGAGTGATTGCGCATATGCTTGGTTAGTTAGCATATGAACAAAGCATGCCTTCTAAAAAGTAGTCTACAGTTCACTAATCCTTTATTTCTTGTACTAGAGAATAGTTATTGGTAACATTTGGTGCTGAAAATGCTAATCCTGTGTGCAGGTATTCAATGCCAGGGCCTCATTATCGCAAGAGTTACAAAAACGAACCAAGCCAATAGAAGGAGATTGGTCAAAGGAGGAGACTTTTAAATCAACTGACGGGGGTGGTTCTCAACATGAGGAGATGCTTACTGTCCCTTCTGCTCCGCTCTCCGCGGATGCGGTTCAAGACATGTCTAGTGTGGATGTTTCCTCTTTATCTGTAGTGGTCGGCTCTGGTACCGATGTGCACCCTGTCATTAGTGAAAATCAAACAGTTGATAGACTTGTGGCTGAAGAAGGACCTATTACCCTAAGCAAAGATGAAAAATTGCAATCTGCATCAGCGACTAAGTTAGAGGAGAGTGACGAAGAGGATGCTGATGATTGGTTGAAGGAAGAAAACACGGAAATTACAGGTACCAGTAAAACCACCATGTCTTTTGAGGATGATGAGGATGTGTCTTTCAGTGATCTTGAAGAGGATGATTCAGATATGCCTGCAAAATCAAAAAACGCAGCTTACAGCTCTGATAAGGACTCACAAGATTGGGTCCAGTTGAGGAAAAGCTCCACCGACTTGTCTAGAGATTCCAGCTCCATCAATCAGATTAGTTCTGTTAAGGAAA</genome_strand>
        <mrna_strand>AGGGCTATGCATCCTGAGACATGGTTGGATTTCCCTTTGTTCGAGGATGAAGATGACGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGACTTGTCTGATGCACAACAAGAGCATGCATTAGCTGTTGAGCGTTTTGCTCCAAGACTGGCTGCTTTGAGGATTGAGCTCTGCCCAGGCTACATGAATGAGGCTCGCTTTTGGGAGATTTACTTTGTTCTTCTGCACCCTAGACTGAATAAACAAGATGCTGAACTTCTATCCACACCCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCAATGCCAGGGCCTCATTATCGCAAGAGTTACAAAAACGAACCAAGCCAATAGAAGGAGATTGGTCAAAGGAGGAGACTTTTAAATCAACTGACGGGGGTGGTTCTCAACATGAGGAGATGCTTACTGTCCCTTCTGCTCCGCTCTCCGCGGATGCGGTTCAAGACATGTCTAGTGTGGATGTTTCCTCTTTATCTGTAGTGGTCGGCTCTGGTACCGATGTGCACCCTGTCATTAGTGAAAATCAAACAGTTGATAGACTTGTGGCTGAAGAAGGACCTATTACCCTAAGCAAAGATGAAAAATTGCAATCTGCATCAGCGACTAAGTTAGAGGAGAGTGACGAAGAGGATGCTGATGATTGGTTGAAGGAAGAAAACACGGAAATTACAGGTACCAGTAAAACCACCATGTCTTTTGAGGATGATGAGGATGTGTCTTTCAGTGATCTTGAAGAGGATGATTCAGATATGCCTGCAAAATCAAAAAACGCAGCTTACAGCTCTGATAAGGACTCACAAGATTGGGTCCAGTTGAGGAAAAGCTCCACCGACTTGTCTAGAGATTCCAGCTCCATCAATCAGATTAGTTCTGTTAAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E537488" ref_strand="+" ref_description="SGN-E537488 [TUS-56-B22](-)">
      <seq>cccaggtattcaatgccagggcctcattatcgcaagagttacaaaaacgaaccaagccaatagaaggagattggtcaaaggaggagacttttaaatcaactgacgggggtggttctcaacatgaggagatgcttactgtcccttctgctccgctctccgcggatgcggttcaagacatgtctagtgtggatgtttcctctttatctgtagtggtcggctctggtaccgatgtgcaccctgtcattagtgaaaatcaaacagttgatagacttgtggctgaagaaggacctattaccctaagcaaagatgaaaaattgcaatctgcatcagcgactaagttagaggagagtgacgaagaggatgctgatgattggttgaaggaagaaaacacggaaattacaggtaccagtaaaaccaccatgtcttttgaggatgatgaggatgtgtctttcagtgatcttgaagaggatgattcagatatgcctgcaaaatcaaaaaacgcagcttacagctctgataaggactcacaagattgggtccagttgaggaaaagctccaccgacttgtctagagattccagctccatcaatcagattagttctgttaaggaaaatcctgatagcaaagaatcaaatgattggctggatattgatgaccttgaggtggcgtgaacttatgtaagatttaaatatagttgttgttccgctcatttcttgtgaatagctattccccatcctccagtccgtactctccgctgagaactccttaactgtattgtttgtacatagaacgccntaatgaaagacaatncgggttgtaataaataaaaaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="102386" stop="103805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102684" g_stop="103505" g_length="822"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="824" r_length="824" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="826" polyA_stop="837"/>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E537488" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102684" e_stop="103505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGGTATTCAATGCCAGGGCCTCATTATCGCAAGAGTTACAAAAACGAACCAAGCCAATAGAAGGAGATTGGTCAAAGGAGGAGACTTTTAAATCAACTGACGGGGGTGGTTCTCAACATGAGGAGATGCTTACTGTCCCTTCTGCTCCGCTCTCCGCGGATGCGGTTCAAGACATGTCTAGTGTGGATGTTTCCTCTTTATCTGTAGTGGTCGGCTCTGGTACCGATGTGCACCCTGTCATTAGTGAAAATCAAACAGTTGATAGACTTGTGGCTGAAGAAGGACCTATTACCCTAAGCAAAGATGAAAAATTGCAATCTGCATCAGCGACTAAGTTAGAGGAGAGTGACGAAGAGGATGCTGATGATTGGTTGAAGGAAGAAAACACGGAAATTACAGGTACCAGTAAAACCACCATGTCTTTTGAGGATGATGAGGATGTGTCTTTCAGTGATCTTGAAGAGGATGATTCAGATATGCCTGCAAAATCAAAAAACGCAGCTTACAGCTCTGATAAGGACTCACAAGATTGGGTCCAGTTGAGGAAAAGCTCCACCGACTTGTCTAGAGATTCCAGCTCCATCAATCAGATTAGTTCTGTTAAGGAAAATCCTGATAGCAAAGAATCAAATGATTGGCTGGATATTGATGACCTTGAGGTGGCGTGAACTTATGTAAGATTTAAATATAGTTGTTGTTCCGCTCATTTCTTGTGAATAGCTATTCCCCATCCTCCAGTCCGTACTCTCCGCTGAGAACTCCTTAACTGTATTGTTTGTACATAGAACGCC-TAATGAAAGACAAT-CGGGTTGTAATATA</genome_strand>
        <mrna_strand>CCCAGGTATTCAATGCCAGGGCCTCATTATCGCAAGAGTTACAAAAACGAACCAAGCCAATAGAAGGAGATTGGTCAAAGGAGGAGACTTTTAAATCAACTGACGGGGGTGGTTCTCAACATGAGGAGATGCTTACTGTCCCTTCTGCTCCGCTCTCCGCGGATGCGGTTCAAGACATGTCTAGTGTGGATGTTTCCTCTTTATCTGTAGTGGTCGGCTCTGGTACCGATGTGCACCCTGTCATTAGTGAAAATCAAACAGTTGATAGACTTGTGGCTGAAGAAGGACCTATTACCCTAAGCAAAGATGAAAAATTGCAATCTGCATCAGCGACTAAGTTAGAGGAGAGTGACGAAGAGGATGCTGATGATTGGTTGAAGGAAGAAAACACGGAAATTACAGGTACCAGTAAAACCACCATGTCTTTTGAGGATGATGAGGATGTGTCTTTCAGTGATCTTGAAGAGGATGATTCAGATATGCCTGCAAAATCAAAAAACGCAGCTTACAGCTCTGATAAGGACTCACAAGATTGGGTCCAGTTGAGGAAAAGCTCCACCGACTTGTCTAGAGATTCCAGCTCCATCAATCAGATTAGTTCTGTTAAGGAAAATCCTGATAGCAAAGAATCAAATGATTGGCTGGATATTGATGACCTTGAGGTGGCGTGAACTTATGTAAGATTTAAATATAGTTGTTGTTCCGCTCATTTCTTGTGAATAGCTATTCCCCATCCTCCAGTCCGTACTCTCCGCTGAGAACTCCTTAACTGTATTGTTTGTACATAGAACGCCNTAATGAAAGACAATNCGGGTTGTAATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E554281" ref_strand="+" ref_description="SGN-E554281 [cTSC-3-M3]">
      <seq>atgaacactatattacaacccgattgtctttcattaggcgttctatgtacaaacaatacagttaaggagttctcagcggagagtacggactggaggatggggaatagctattcacaagaaatgagcggaacaacaactatatttaaatcttacataagttcacgccacctcaaggtcatcaatatccagccaatcatttgattctttgctatcaggattttccttaacagaactaatctgattgatggagctggaatctctagacaagtcggtggagcttttcctcaactggacccaatcttgtgagtccttatcagagctgtaagctgcgttttttgattttgcaggcatatctgaatcatcctcttcaagatcactgaaagacacatcctcatcatcctcaaaagacatggtggttttactggtacctgtaatttccgtgttttcttccttcaaccaatcatcagcatcctcttcgtcactctcctctaacttagtcgctgatgcagattgcaatttttcatctttgcttagggtaataggtccttcttcagccacaagtctatcaactgtttgattttcactaatgacagggtgcacatcggtaccagagccgaccactacagataaagaggaaacatccacactagacatgtcttgaaccgcatccgcggagagcggagcagaagggacagtaagcatctcctcatgttgagaaccacccccgtcagttgatttaaaagtctcctcctttgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="103813" stop="102456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103513" g_stop="102756" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="758" r_length="758" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E554281" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103513" e_stop="102756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAACACTATATTACAACCCGATTGTCTTTCATTAGGCGTTCTATGTACAAACAATACAGTTAAGGAGTTCTCAGCGGAGAGTACGGACTGGAGGATGGGGAATAGCTATTCACAAGAAATGAGCGGAACAACAACTATATTTAAATCTTACATAAGTTCACGCCACCTCAAGGTCATCAATATCCAGCCAATCATTTGATTCTTTGCTATCAGGATTTTCCTTAACAGAACTAATCTGATTGATGGAGCTGGAATCTCTAGACAAGTCGGTGGAGCTTTTCCTCAACTGGACCCAATCTTGTGAGTCCTTATCAGAGCTGTAAGCTGCGTTTTTTGATTTTGCAGGCATATCTGAATCATCCTCTTCAAGATCACTGAAAGACACATCCTCATCATCCTCAAAAGACATGGTGGTTTTACTGGTACCTGTAATTTCCGTGTTTTCTTCCTTCAACCAATCATCAGCATCCTCTTCGTCACTCTCCTCTAACTTAGTCGCTGATGCAGATTGCAATTTTTCATCTTTGCTTAGGGTAATAGGTCCTTCTTCAGCCACAAGTCTATCAACTGTTTGATTTTCACTAATGACAGGGTGCACATCGGTACCAGAGCCGACCACTACAGATAAAGAGGAAACATCCACACTAGACATGTCTTGAACCGCATCCGCGGAGAGCGGAGCAGAAGGGACAGTAAGCATCTCCTCATGTTGAGAACCACCCCCGTCAGTTGATTTAAAAGTCTCCTCCTTTGACC</genome_strand>
        <mrna_strand>ATGAACACTATATTACAACCCGATTGTCTTTCATTAGGCGTTCTATGTACAAACAATACAGTTAAGGAGTTCTCAGCGGAGAGTACGGACTGGAGGATGGGGAATAGCTATTCACAAGAAATGAGCGGAACAACAACTATATTTAAATCTTACATAAGTTCACGCCACCTCAAGGTCATCAATATCCAGCCAATCATTTGATTCTTTGCTATCAGGATTTTCCTTAACAGAACTAATCTGATTGATGGAGCTGGAATCTCTAGACAAGTCGGTGGAGCTTTTCCTCAACTGGACCCAATCTTGTGAGTCCTTATCAGAGCTGTAAGCTGCGTTTTTTGATTTTGCAGGCATATCTGAATCATCCTCTTCAAGATCACTGAAAGACACATCCTCATCATCCTCAAAAGACATGGTGGTTTTACTGGTACCTGTAATTTCCGTGTTTTCTTCCTTCAACCAATCATCAGCATCCTCTTCGTCACTCTCCTCTAACTTAGTCGCTGATGCAGATTGCAATTTTTCATCTTTGCTTAGGGTAATAGGTCCTTCTTCAGCCACAAGTCTATCAACTGTTTGATTTTCACTAATGACAGGGTGCACATCGGTACCAGAGCCGACCACTACAGATAAAGAGGAAACATCCACACTAGACATGTCTTGAACCGCATCCGCGGAGAGCGGAGCAGAAGGGACAGTAAGCATCTCCTCATGTTGAGAACCACCCCCGTCAGTTGATTTAAAAGTCTCCTCCTTTGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E547999" ref_strand="+" ref_description="SGN-E547999 [TUS-57-A16](-)">
      <seq>atgaggagatgcttactgtcccttctgctccgctctccgcggatgcggttcaagacatgtctagtgtggatgtttcctctttatctgtagtggtcggctctggtaccgatgtgcaccctgtcattagtgaaaatcaaacagttgatagacttgtggctgaagaaggacctattaccctaagcaaagatgaaaaattgcaatctgcatcagcgactaagttagaggagagtgacgaagaggatgctgatgattggttgaaggaagaaaacacggaaattacaggtaccagtaaaaccaccatgtcttttgaggatgatgaggatgtgtctttcagtgatcttgaagaggatgattcagatatgcctgcaaaatcaaaaaacgcagcttacagctctgataaggactcacaagattgggtccagttgaggaaaagctccaccgacttgtctagagattccagctccatcaatcagattagttctgttaaggaaaatcctgatagcaaagaatcaaatgattggctggatattgatgaccttgaggtggcgtgaacttatgtaagatttaaatatagttgttgttccgctcatttcttgtgaatagctattccccatcctccagtccgtactctccgctgagaactccttaactgtattgtttgtacatagaacgcctaatgaaagacaatcgggttgtataaataaaaaaaaaaaaaaaaaaactcgaggggggcccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="102504" stop="106987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102804" g_stop="103500" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="697" r_length="697" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="699" polyA_stop="721"/>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E547999" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102804" e_stop="103500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAGGAGATGCTTACTGTCCCTTCTGCTCCGCTCTCCGCGGATGCGGTTCAAGACATGTCTAGTGTGGATGTTTCCTCTTTATCTGTAGTGGTCGGCTCTGGTACCGATGTGCACCCTGTCATTAGTGAAAATCAAACAGTTGATAGACTTGTGGCTGAAGAAGGACCTATTACCCTAAGCAAAGATGAAAAATTGCAATCTGCATCAGCGACTAAGTTAGAGGAGAGTGACGAAGAGGATGCTGATGATTGGTTGAAGGAAGAAAACACGGAAATTACAGGTACCAGTAAAACCACCATGTCTTTTGAGGATGATGAGGATGTGTCTTTCAGTGATCTTGAAGAGGATGATTCAGATATGCCTGCAAAATCAAAAAACGCAGCTTACAGCTCTGATAAGGACTCACAAGATTGGGTCCAGTTGAGGAAAAGCTCCACCGACTTGTCTAGAGATTCCAGCTCCATCAATCAGATTAGTTCTGTTAAGGAAAATCCTGATAGCAAAGAATCAAATGATTGGCTGGATATTGATGACCTTGAGGTGGCGTGAACTTATGTAAGATTTAAATATAGTTGTTGTTCCGCTCATTTCTTGTGAATAGCTATTCCCCATCCTCCAGTCCGTACTCTCCGCTGAGAACTCCTTAACTGTATTGTTTGTACATAGAACGCCTAATGAAAGACAATCGGGTTGTA</genome_strand>
        <mrna_strand>ATGAGGAGATGCTTACTGTCCCTTCTGCTCCGCTCTCCGCGGATGCGGTTCAAGACATGTCTAGTGTGGATGTTTCCTCTTTATCTGTAGTGGTCGGCTCTGGTACCGATGTGCACCCTGTCATTAGTGAAAATCAAACAGTTGATAGACTTGTGGCTGAAGAAGGACCTATTACCCTAAGCAAAGATGAAAAATTGCAATCTGCATCAGCGACTAAGTTAGAGGAGAGTGACGAAGAGGATGCTGATGATTGGTTGAAGGAAGAAAACACGGAAATTACAGGTACCAGTAAAACCACCATGTCTTTTGAGGATGATGAGGATGTGTCTTTCAGTGATCTTGAAGAGGATGATTCAGATATGCCTGCAAAATCAAAAAACGCAGCTTACAGCTCTGATAAGGACTCACAAGATTGGGTCCAGTTGAGGAAAAGCTCCACCGACTTGTCTAGAGATTCCAGCTCCATCAATCAGATTAGTTCTGTTAAGGAAAATCCTGATAGCAAAGAATCAAATGATTGGCTGGATATTGATGACCTTGAGGTGGCGTGAACTTATGTAAGATTTAAATATAGTTGTTGTTCCGCTCATTTCTTGTGAATAGCTATTCCCCATCCTCCAGTCCGTACTCTCCGCTGAGAACTCCTTAACTGTATTGTTTGTACATAGAACGCCTAATGAAAGACAATCGGGTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E711507" ref_strand="+" ref_description="SGN-E711507 [FB02AG08]">
      <seq>ccgtttagagtggatgtttcctctttatctgtagtggtcggccctggtaccgatgtgcaccctgtcattagtgaaaatcaaacagttgatagacttgtggctgaagaaggacctattaccctaagcaaagatgaaaaattgcaatctgcatcagcgactaagttagaggagagtgacgaagaggatgctgatgattggttgaaggaagaaaacacggaaattacaggtaccagtaaaaccaccatgtcttttgaggatgatgaggatgtgtctttcagtgatcttgaagaggatgattcagatatgcctgcaaaatcaaaaaacgcagcttacagctctgataaggactcacaagattgggtccagttgaggaaaagctccaccgacttgtctagagattccagctccatcaatcagattagttctgttaaggaaaatcctgatagcaaagaatcaaatgattggctggatattgatgaccttgaggtggcgtgaacttatgtaagatttaaatatagttgttgttccgctcatttcttgtgaatagctattccccatcctccagtccgtactctccgctgagaactccttaactgtattgtttgtacatagaacgcctaatgaaagacaatcgggttgtaatatagtgttcatgatattaattgatggtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="102562" stop="103830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102860" g_stop="103530" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="671" r_length="671" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="672" polyA_stop="681"/>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E711507" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102860" e_stop="103530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCTAGTGTGGATGTTTCCTCTTTATCTGTAGTGGTCGGCTCTGGTACCGATGTGCACCCTGTCATTAGTGAAAATCAAACAGTTGATAGACTTGTGGCTGAAGAAGGACCTATTACCCTAAGCAAAGATGAAAAATTGCAATCTGCATCAGCGACTAAGTTAGAGGAGAGTGACGAAGAGGATGCTGATGATTGGTTGAAGGAAGAAAACACGGAAATTACAGGTACCAGTAAAACCACCATGTCTTTTGAGGATGATGAGGATGTGTCTTTCAGTGATCTTGAAGAGGATGATTCAGATATGCCTGCAAAATCAAAAAACGCAGCTTACAGCTCTGATAAGGACTCACAAGATTGGGTCCAGTTGAGGAAAAGCTCCACCGACTTGTCTAGAGATTCCAGCTCCATCAATCAGATTAGTTCTGTTAAGGAAAATCCTGATAGCAAAGAATCAAATGATTGGCTGGATATTGATGACCTTGAGGTGGCGTGAACTTATGTAAGATTTAAATATAGTTGTTGTTCCGCTCATTTCTTGTGAATAGCTATTCCCCATCCTCCAGTCCGTACTCTCCGCTGAGAACTCCTTAACTGTATTGTTTGTACATAGAACGCCTAATGAAAGACAATCGGGTTGTAATATAGTGTTCATGATATTAATTGATGGTA</genome_strand>
        <mrna_strand>CCGTTTAGAGTGGATGTTTCCTCTTTATCTGTAGTGGTCGGCCCTGGTACCGATGTGCACCCTGTCATTAGTGAAAATCAAACAGTTGATAGACTTGTGGCTGAAGAAGGACCTATTACCCTAAGCAAAGATGAAAAATTGCAATCTGCATCAGCGACTAAGTTAGAGGAGAGTGACGAAGAGGATGCTGATGATTGGTTGAAGGAAGAAAACACGGAAATTACAGGTACCAGTAAAACCACCATGTCTTTTGAGGATGATGAGGATGTGTCTTTCAGTGATCTTGAAGAGGATGATTCAGATATGCCTGCAAAATCAAAAAACGCAGCTTACAGCTCTGATAAGGACTCACAAGATTGGGTCCAGTTGAGGAAAAGCTCCACCGACTTGTCTAGAGATTCCAGCTCCATCAATCAGATTAGTTCTGTTAAGGAAAATCCTGATAGCAAAGAATCAAATGATTGGCTGGATATTGATGACCTTGAGGTGGCGTGAACTTATGTAAGATTTAAATATAGTTGTTGTTCCGCTCATTTCTTGTGAATAGCTATTCCCCATCCTCCAGTCCGTACTCTCCGCTGAGAACTCCTTAACTGTATTGTTTGTACATAGAACGCCTAATGAAAGACAATCGGGTTGTAATATAGTGTTCATGATATTAATTGATGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689447" ref_strand="+" ref_description="SGN-E689447 [t3_tus_84_N09]">
      <seq>catggaaaagctccaccgacttgtctagagattccagctccatcaatcagattagttctgttaaggaaaatcctgatagcaaagaatcaaatgattggctggatattgatgaccttgaggtggcgtgaacttatgtaagatttaaatatagttgttgttccgctcatttcttgtgaatagctattccccatcctccagtccgtactctccgctgagaactccttaactgtattgtttgtacatagaacgcctaatgaaagacaatcgggttgtaatatagtgttcatgatattaattgatggtagcttcctgcttgtgtcactacatgagcatatataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="102930" stop="103864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103227" g_stop="103574" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E689447" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103227" e_stop="103574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGAAAAGCTCCACCGACTTGTCTAGAGATTCCAGCTCCATCAATCAGATTAGTTCTGTTAAGGAAAATCCTGATAGCAAAGAATCAAATGATTGGCTGGATATTGATGACCTTGAGGTGGCGTGAACTTATGTAAGATTTAAATATAGTTGTTGTTCCGCTCATTTCTTGTGAATAGCTATTCCCCATCCTCCAGTCCGTACTCTCCGCTGAGAACTCCTTAACTGTATTGTTTGTACATAGAACGCCTAATGAAAGACAATCGGGTTGTAATATAGTGTTCATGATATTAATTGATGGTAGCTTCCTGCTTGTGTCACTACATGAGCATATATACTCGGAGAAG</genome_strand>
        <mrna_strand>CATGGAAAAGCTCCACCGACTTGTCTAGAGATTCCAGCTCCATCAATCAGATTAGTTCTGTTAAGGAAAATCCTGATAGCAAAGAATCAAATGATTGGCTGGATATTGATGACCTTGAGGTGGCGTGAACTTATGTAAGATTTAAATATAGTTGTTGTTCCGCTCATTTCTTGTGAATAGCTATTCCCCATCCTCCAGTCCGTACTCTCCGCTGAGAACTCCTTAACTGTATTGTTTGTACATAGAACGCCTAATGAAAGACAATCGGGTTGTAATATAGTGTTCATGATATTAATTGATGGTAGCTTCCTGCTTGTGTCACTACATGAGCATATATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E688141" ref_strand="+" ref_description="SGN-E688141 [T3_tus_85_N09]">
      <seq>gaaaagctccaccgacttgtctagagattccagctccatcaatcagattagttctgttaaggaaaatcctgatagcaaagaatcaaatgattggctggatattgatgaccttgaggtggcgtgaacttatgtaagatttaaatatagttgttgttccgctcatttcttgtgaatagctattccccatcctccagtccgtactctccgctgagaactccttaactgtattgtttgtacatagaacgcctaatgaaagacaatcgggttgtaatatagtgttcatgatattaattgatggtagcttcctgcttgtgtcactacatgagcatatataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="102931" stop="103864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103231" g_stop="103574" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="344" r_length="344" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E688141" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103231" e_stop="103574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGCTCCACCGACTTGTCTAGAGATTCCAGCTCCATCAATCAGATTAGTTCTGTTAAGGAAAATCCTGATAGCAAAGAATCAAATGATTGGCTGGATATTGATGACCTTGAGGTGGCGTGAACTTATGTAAGATTTAAATATAGTTGTTGTTCCGCTCATTTCTTGTGAATAGCTATTCCCCATCCTCCAGTCCGTACTCTCCGCTGAGAACTCCTTAACTGTATTGTTTGTACATAGAACGCCTAATGAAAGACAATCGGGTTGTAATATAGTGTTCATGATATTAATTGATGGTAGCTTCCTGCTTGTGTCACTACATGAGCATATATACTCGGAGAAG</genome_strand>
        <mrna_strand>GAAAAGCTCCACCGACTTGTCTAGAGATTCCAGCTCCATCAATCAGATTAGTTCTGTTAAGGAAAATCCTGATAGCAAAGAATCAAATGATTGGCTGGATATTGATGACCTTGAGGTGGCGTGAACTTATGTAAGATTTAAATATAGTTGTTGTTCCGCTCATTTCTTGTGAATAGCTATTCCCCATCCTCCAGTCCGTACTCTCCGCTGAGAACTCCTTAACTGTATTGTTTGTACATAGAACGCCTAATGAAAGACAATCGGGTTGTAATATAGTGTTCATGATATTAATTGATGGTAGCTTCCTGCTTGTGTCACTACATGAGCATATATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E335870" ref_strand="+" ref_description="SGN-E335870 [cTOE-6-D2]">
      <seq>aaaagctccaccgacttgtctagagattccagctccatcaatcagattagttctgttaaggaaaatcctgatagcaaagaatcaaatgattggctggatattgatgaccttgaggtggcgtgaacttatgtaagatttaaatatagttgttgttccgctcatttcttgtgaatagctattccccatcctccagtccgtactctccgctgagaactccttaactgtattgtttgtacatagaacgcctaatgaaagacaatcgggttgtaatatagtgttcatgatattaattgatggtagcttcctgcttgtgtcactacatgagcatatataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="+" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="102932" stop="103864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103232" g_stop="103574" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="+" ref_id="SGN-E335870" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103232" e_stop="103574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCTCCACCGACTTGTCTAGAGATTCCAGCTCCATCAATCAGATTAGTTCTGTTAAGGAAAATCCTGATAGCAAAGAATCAAATGATTGGCTGGATATTGATGACCTTGAGGTGGCGTGAACTTATGTAAGATTTAAATATAGTTGTTGTTCCGCTCATTTCTTGTGAATAGCTATTCCCCATCCTCCAGTCCGTACTCTCCGCTGAGAACTCCTTAACTGTATTGTTTGTACATAGAACGCCTAATGAAAGACAATCGGGTTGTAATATAGTGTTCATGATATTAATTGATGGTAGCTTCCTGCTTGTGTCACTACATGAGCATATATACTCGGAGAAG</genome_strand>
        <mrna_strand>AAAAGCTCCACCGACTTGTCTAGAGATTCCAGCTCCATCAATCAGATTAGTTCTGTTAAGGAAAATCCTGATAGCAAAGAATCAAATGATTGGCTGGATATTGATGACCTTGAGGTGGCGTGAACTTATGTAAGATTTAAATATAGTTGTTGTTCCGCTCATTTCTTGTGAATAGCTATTCCCCATCCTCCAGTCCGTACTCTCCGCTGAGAACTCCTTAACTGTATTGTTTGTACATAGAACGCCTAATGAAAGACAATCGGGTTGTAATATAGTGTTCATGATATTAATTGATGGTAGCTTCCTGCTTGTGTCACTACATGAGCATATATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546903" ref_strand="+" ref_description="SGN-E546903 [TUS-70-I4](-)">
      <seq>tgaggagtatggacagacccaaattgctatttgacactatctgcaccttgacagacttgcaatatgtcgtgttccatgcatccatcagttcttttgaatccattgccattcaggaatactatgtgagacacaagaatggatggactttggattcagaaagtgaaagacggaaaatgatccaaaatctgatggctgctactgagaggagagtatctcatgaattgaggctggatgttactactcaaaacagggtaggactgttagcagatgtcacaagagtgtttcgggagaacggattatccataagcaggactgaggttggggtacagggagagcaagcagttggcacattctatgtaaaagatacttcagggcaagatgtgacttcagaaaccttggagatagtaagacgagaaattggaggtactgtcctggtggcaaataaatcctcagagaggccatcttcacaatcaacagatttgtcaaatacaagccctagcagtagcagtggcaagcaagacaacaagcctggtttctcattgggaagcatgttctggtctcagcttgagtggctttccagcaatttcagacctataaaatcctaagattccaagtgctgatcttgaagaccctactgtgtttaggccatgttgattgtaaatatttagcaacttccttctgtaaataattagcaacctccgtctgtaaataattagcaacagtggtaaataattgtagacgcatggtacaatgtacattatctttgcagggtaaaccattggaaattccaaaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="105043" stop="103400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104743" g_stop="104631" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104630" i_stop="104499" i_length="132">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.944" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104498" g_stop="104394" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="218" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104393" i_stop="104273" i_length="121">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104272" g_stop="103693" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="805" r_length="587" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E546903" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104743" e_stop="104631"/>
          <exon e_start="104498" e_stop="104394"/>
          <exon e_start="104272" e_stop="103693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGAGTATGGACAGACCCAAATTGCTATTTGACACTATCTGCACCTTGACAGACTTGCAATATGTCGTGTTCCATGCATCCATCAATTCTTTTGAATCCATTGCCATTCAGGTAATCGTTTACTTTTGCCCTCTTTATCTAACTGCTCCTGCAAAGTCATGGTGGTACAGGTCCAGACAGTACAAAAAAACCCTAAATCTTTGTTTTTAACTATCTACGTGTGCATGGAAAAAAAAAACACAGGAATACTATGTGAGACACAAGAATGGATGGACTTTAGATTCAGAAAGTGAAAGACGGAAAATGATCCAAAATCTGATGGCTGCTACTGAGAGGAGAGTATCTCATGTACGTTTTCAAATGGATTAACTAGAACACCGTTTAGTGTATCTTTATAATCTACTTCCGCCCTCCCTATAACAAAGTGCTCTAATGAGATATATATTAAGTGACTATATGATTTATACAGGAATTGAGACTGGATGTTACTACTCAAAACAGGGTAGGACTGTTAGCAGATGTCACAAGAGTGTTTCGGGAGAACGGATTATCCATAAGCAGGACTGAGGTTGGGGTACAGGGAGAGCAAGCAGTTGGCACATTCTATGTAAAAGATACTTCAGGGCAAGATGTGACTTCAGAAACCTTGGAGGTAGTAAGACGAGAAATTGGAGGTACCGTCCTGGTGGCAAATAAATCCTCAGGGAGGCCATCTTCTCAACCAACAGATTTGTCAAATACAAGCCCTAGCAGTAGCAGTGGCAAGCAAGACAAGAAGCCTGGTTTCTCATTAGGAAGCATGTTCTGGTCTCAGCTTGAGTGGCTTTCCAGCAATTTCAGACCTATAAAATCC------T--AAGTGCTGATCTTGAAGACCCTACTGTGTTTAGGCCATGTTGATTGTAAATATTTAGCAACTTCCTTCTGTAAATAATTAGCAACCTCCGTCTGTAAATAATTAGCAACAGTGGTAAATAATGATAGACGCATGGTACAATGTACATTATCTTTGCAGAGTAAAACCATTGGAAGTTCCAAAATTAAATGGGTGG</genome_strand>
        <mrna_strand>TGAGGAGTATGGACAGACCCAAATTGCTATTTGACACTATCTGCACCTTGACAGACTTGCAATATGTCGTGTTCCATGCATCCATCAGTTCTTTTGAATCCATTGCCATTCAG....................................................................................................................................GAATACTATGTGAGACACAAGAATGGATGGACTTTGGATTCAGAAAGTGAAAGACGGAAAATGATCCAAAATCTGATGGCTGCTACTGAGAGGAGAGTATCTCAT.........................................................................................................................GAATTGAGGCTGGATGTTACTACTCAAAACAGGGTAGGACTGTTAGCAGATGTCACAAGAGTGTTTCGGGAGAACGGATTATCCATAAGCAGGACTGAGGTTGGGGTACAGGGAGAGCAAGCAGTTGGCACATTCTATGTAAAAGATACTTCAGGGCAAGATGTGACTTCAGAAACCTTGGAGATAGTAAGACGAGAAATTGGAGGTACTGTCCTGGTGGCAAATAAATCCTCAGAGAGGCCATCTTCACAATCAACAGATTTGTCAAATACAAGCCCTAGCAGTAGCAGTGGCAAGCAAGACAACAAGCCTGGTTTCTCATTGGGAAGCATGTTCTGGTCTCAGCTTGAGTGGCTTTCCAGCAATTTCAGACCTATAAAATCCTAAGATTCCAAGTGCTGATCTTGAAGACCCTACTGTGTTTAGGCCATGTTGATTGTAAATATTTAGCAACTTCCTTCTGTAAATAATTAGCAACCTCCGTCTGTAAATAATTAGCAACAGTGGTAAATAATTGTAGACGCATGGTACAATGTACATTATCTTTGCAGGGT-AAACCATTGGAAATTCCAAAATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577109" ref_strand="-" ref_description="SGN-E577109 [32850]">
      <seq>acagacttgcaatatgtcgtgttccacgcttccatcagttcttttgaatccattgcctttcaggaatactatgtgagacacaagaatggatggactttggattcagaaagtgagagacggagaatgatccaaaatctgatggctgctactgagaggagagtatctcatgaattgaggctggatgttactactcaaaacagggtaggactgttagcagatgtcacaagagtgtttcgggagaacggattatccataagcaggactgaggttggggtacagggagagcaagcagttggcacattctatgtaaaagatacttcagggcaagctgtgacttcagaaaccttggagatagtaagacgagaaattggaggtactgtcctggtggtaaataaatcctcagagaggccatcttctcaaccaacaaatttgtcaaatacaagcactagcactagcagtagcagtagcaatggcaagcaagacaacaagcctggtttctcattaggaagcatgttttggtctcagcttgagtggctttccagcaatttcagacctataaaatcctaagattccaagtggtgatctgaagaccctactgtgtttaggccatgttgattgtaaatatttagcaacttccatctgtaaataaattagtaacctccgtctgtaaataattagcaacattggtaaataatgatagaggcatggtacaatgtacatatctttgcagagtaaaaccattggaagttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="104993" stop="103409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104693" g_stop="104631" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104630" i_stop="104499" i_length="132">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.944" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104498" g_stop="104394" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="168" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104393" i_stop="104273" i_length="121">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104272" g_stop="103709" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="751" r_length="583" r_score="0.899"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E577109" ref_strand="-">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577109" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="104693" e_stop="104631"/>
          <exon e_start="104498" e_stop="104394"/>
          <exon e_start="104272" e_stop="103709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGACTTGCAATATGTCGTGTTCCATGCATCCATCAATTCTTTTGAATCCATTGCCATTCAGGTAATCGTTTACTTTTGCCCTCTTTATCTAACTGCTCCTGCAAAGTCATGGTGGTACAGGTCCAGACAGTACAAAAAAACCCTAAATCTTTGTTTTTAACTATCTACGTGTGCATGGAAAAAAAAAACACAGGAATACTATGTGAGACACAAGAATGGATGGACTTTAGATTCAGAAAGTGAAAGACGGAAAATGATCCAAAATCTGATGGCTGCTACTGAGAGGAGAGTATCTCATGTACGTTTTCAAATGGATTAACTAGAACACCGTTTAGTGTATCTTTATAATCTACTTCCGCCCTCCCTATAACAAAGTGCTCTAATGAGATATATATTAAGTGACTATATGATTTATACAGGAATTGAGACTGGATGTTACTACTCAAAACAGGGTAGGACTGTTAGCAGATGTCACAAGAGTGTTTCGGGAGAACGGATTATCCATAAGCAGGACTGAGGTTGGGGTACAGGGAGAGCAAGCAGTTGGCACATTCTATGTAAAAGATACTTCAGGGCAAGATGTGACTTCAGAAACCTTGGAGGTAGTAAGACGAGAAATTGGAGGTACCGTCCTGGTGGCAAATAAATCCTCAGGGAGGCCATCTTCTCAACCAACAGATTTGTCAAATACAAG--C---C-CTAGCAGTAGC---AG---TGGCAAGCAAGACAAGAAGCCTGGTTTCTCATTAGGAAGCATGTTCTGGTCTCAGCTTGAGTGGCTTTCCAGCAATTTCAGACCTATAAAATCCTAAG--TGC---TGAT-CT-TGAAGACCCTACTGTGTTTAGGCCATGTTGATTGTAAATATTTAGCAACTTCCTTCTGTAAAT-AATTAGCAACCTCCGTCTGTAAATAATTAGCAACAGTGGTAAATAATGATAGACGCATGGTACAATGTACATTATCTTTGCAGAGTAAAACCATTGGAAGTTCC</genome_strand>
        <mrna_strand>ACAGACTTGCAATATGTCGTGTTCCACGCTTCCATCAGTTCTTTTGAATCCATTGCCTTTCAG....................................................................................................................................GAATACTATGTGAGACACAAGAATGGATGGACTTTGGATTCAGAAAGTGAGAGACGGAGAATGATCCAAAATCTGATGGCTGCTACTGAGAGGAGAGTATCTCAT.........................................................................................................................GAATTGAGGCTGGATGTTACTACTCAAAACAGGGTAGGACTGTTAGCAGATGTCACAAGAGTGTTTCGGGAGAACGGATTATCCATAAGCAGGACTGAGGTTGGGGTACAGGGAGAGCAAGCAGTTGGCACATTCTATGTAAAAGATACTTCAGGGCAAGCTGTGACTTCAGAAACCTTGGAGATAGTAAGACGAGAAATTGGAGGTACTGTCCTGGTGGTAAATAAATCCTCAGAGAGGCCATCTTCTCAACCAACAAATTTGTCAAATACAAGCACTAGCACTAGCAGTAGCAGTAGCAATGGCAAGCAAGACAACAAGCCTGGTTTCTCATTAGGAAGCATGTTTTGGTCTCAGCTTGAGTGGCTTTCCAGCAATTTCAGACCTATAAAATCCTAAGATTCCAAGTGGTGATCTGAAGACCCTACTGTGTTTAGGCCATGTTGATTGTAAATATTTAGCAACTTCCATCTGTAAATAAATTAGTAACCTCCGTCTGTAAATAATTAGCAACATTGGTAAATAATGATAGAGGCATGGTACAATGTACA-TATCTTTGCAGAGTAAAACCATTGGAAGTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249810" ref_strand="+" ref_description="SGN-E249810 [cLEF-57-J16]">
      <seq>agacggtttcatcagttgatggctgctgagagggactacgaacaatgttgttcctgtggttatgactcaagtggagatgatgtagctcacaggcagaagaagggatctaatagcacagaagtgaagatagaaaattgcaaggagaggggctactccattgttactgtgaggagtatggacagacccaaattgctatttgacactatctgcaccttgacagacttgcaatatgtcgtgttccatgcatccatcaattcttttgaatccattgccattcaggaatactatgtgagacacaagaatggatggactttagattcagaaagtgaaagacggaaaatgatccaaaatctgatggctgctactgagaggagagtatctcatgaattgagactggatgttactactcaaaacagggtaggactgttagcagatgtcacaagagtgtttcgggagaacggattatccataagcaggactgaggttggggtacagggagagcaagcagttggcacattctatgtaaaagatacttcagggcaagatgtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="105209" stop="103806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104909" g_stop="104631" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104630" i_stop="104499" i_length="132">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104498" g_stop="104394" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="384" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104393" i_stop="104273" i_length="121">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104272" g_stop="104106" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="551" r_length="167" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E249810" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104909" e_stop="104631"/>
          <exon e_start="104498" e_stop="104394"/>
          <exon e_start="104272" e_stop="104106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACGGCTTCATCAGTTGATGGCTGCTGACAGGGACTACGAACAATGTTGTTCCTGTGGTTATGACTCAAGTGGAGATGATGTAGCTCACAGGCAGAAGAAGGGATCTAATAGCACAGAAGTGAAGATAGAAAATTGCAAGGAGAGGGGCTACTCCATTGTTACTGTGAGGAGTATGGACAGACCCAAATTGCTATTTGACACTATCTGCACCTTGACAGACTTGCAATATGTCGTGTTCCATGCATCCATCAATTCTTTTGAATCCATTGCCATTCAGGTAATCGTTTACTTTTGCCCTCTTTATCTAACTGCTCCTGCAAAGTCATGGTGGTACAGGTCCAGACAGTACAAAAAAACCCTAAATCTTTGTTTTTAACTATCTACGTGTGCATGGAAAAAAAAAACACAGGAATACTATGTGAGACACAAGAATGGATGGACTTTAGATTCAGAAAGTGAAAGACGGAAAATGATCCAAAATCTGATGGCTGCTACTGAGAGGAGAGTATCTCATGTACGTTTTCAAATGGATTAACTAGAACACCGTTTAGTGTATCTTTATAATCTACTTCCGCCCTCCCTATAACAAAGTGCTCTAATGAGATATATATTAAGTGACTATATGATTTATACAGGAATTGAGACTGGATGTTACTACTCAAAACAGGGTAGGACTGTTAGCAGATGTCACAAGAGTGTTTCGGGAGAACGGATTATCCATAAGCAGGACTGAGGTTGGGGTACAGGGAGAGCAAGCAGTTGGCACATTCTATGTAAAAGATACTTCAGGGCAAGATGTGAC</genome_strand>
        <mrna_strand>AGACGGTTTCATCAGTTGATGGCTGCTGAGAGGGACTACGAACAATGTTGTTCCTGTGGTTATGACTCAAGTGGAGATGATGTAGCTCACAGGCAGAAGAAGGGATCTAATAGCACAGAAGTGAAGATAGAAAATTGCAAGGAGAGGGGCTACTCCATTGTTACTGTGAGGAGTATGGACAGACCCAAATTGCTATTTGACACTATCTGCACCTTGACAGACTTGCAATATGTCGTGTTCCATGCATCCATCAATTCTTTTGAATCCATTGCCATTCAG....................................................................................................................................GAATACTATGTGAGACACAAGAATGGATGGACTTTAGATTCAGAAAGTGAAAGACGGAAAATGATCCAAAATCTGATGGCTGCTACTGAGAGGAGAGTATCTCAT.........................................................................................................................GAATTGAGACTGGATGTTACTACTCAAAACAGGGTAGGACTGTTAGCAGATGTCACAAGAGTGTTTCGGGAGAACGGATTATCCATAAGCAGGACTGAGGTTGGGGTACAGGGAGAGCAAGCAGTTGGCACATTCTATGTAAAAGATACTTCAGGGCAAGATGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E740023" ref_strand="+" ref_description="SGN-E740023 [LC19DA11]">
      <seq>ggcaagggttaatgtccgagatatctgctgtgctggctgagttaggatgccatgtctctggtgccgtggcatggacacataacaagcgagcagcctgcattgtttacatggaagatgatctgaagcatgggccaatcatggacccctatagagtggcacaaatacaggcccagctggagaatgttgttgaggcccaccattatgaaggggagcgacggagtgtgaggttggcagcccctgcagctagccagacccataccgaaagacggcttcatcagttgatggctgctgacagggactacgaacaatgttgttcctgtggttatgactcaagtggagatgatgtagctcacaggcagaagaagggatctaatagcacagaagtgaagatagaaaattgcaaggagaggggctactccattgttactgtgaggagtatggacagacccaaattgctatttgacactatctgcaccttgacagacttgcaatatgtcgtgttccatgcatccatcaattcttttgaatccattgccattcaggaatactatgtgagacacaagaatggatggactttagattcagaaagtgaaagacggaaaatgatccaaaatctgatggctgctactgagaggagagtatctcatgaattgagactggatgttactactcaaaacagggtaggactgttagcagatgtcacaagagtgtttcgggagaacggattatccataagcaggactgaggttggggtacagggagagcaagcagttggcacattctatgtaaaagatacttcagggcaagatgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="105472" stop="103807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105172" g_stop="104631" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104630" i_stop="104499" i_length="132">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104498" g_stop="104394" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="647" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104393" i_stop="104273" i_length="121">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104272" g_stop="104107" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="813" r_length="166" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E740023" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105172" e_stop="104631"/>
          <exon e_start="104498" e_stop="104394"/>
          <exon e_start="104272" e_stop="104107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCAGGGTTAATGTCCGAGATATCTGCTGTGCTGGCTGAGTTAGGATGCCATGTCTCTGGTGCCGTGGCATGGACACATAACAAGCGAGCAGCCTGCATTGTTTACATGGAAGATGATCTGAAGCATGGGCCAATCATGGACCCCTATAGAGTGGCACAAATACAGGCCCAGCTGGAGAATGTTGTTGAGGCCCACCATTATGAAGGGGAGCGACGGAGTGTGAGGTTGGCAGCCCCTGCAGCTAGCCAGACCCATACCGAAAGACGGCTTCATCAGTTGATGGCTGCTGACAGGGACTACGAACAATGTTGTTCCTGTGGTTATGACTCAAGTGGAGATGATGTAGCTCACAGGCAGAAGAAGGGATCTAATAGCACAGAAGTGAAGATAGAAAATTGCAAGGAGAGGGGCTACTCCATTGTTACTGTGAGGAGTATGGACAGACCCAAATTGCTATTTGACACTATCTGCACCTTGACAGACTTGCAATATGTCGTGTTCCATGCATCCATCAATTCTTTTGAATCCATTGCCATTCAGGTAATCGTTTACTTTTGCCCTCTTTATCTAACTGCTCCTGCAAAGTCATGGTGGTACAGGTCCAGACAGTACAAAAAAACCCTAAATCTTTGTTTTTAACTATCTACGTGTGCATGGAAAAAAAAAACACAGGAATACTATGTGAGACACAAGAATGGATGGACTTTAGATTCAGAAAGTGAAAGACGGAAAATGATCCAAAATCTGATGGCTGCTACTGAGAGGAGAGTATCTCATGTACGTTTTCAAATGGATTAACTAGAACACCGTTTAGTGTATCTTTATAATCTACTTCCGCCCTCCCTATAACAAAGTGCTCTAATGAGATATATATTAAGTGACTATATGATTTATACAGGAATTGAGACTGGATGTTACTACTCAAAACAGGGTAGGACTGTTAGCAGATGTCACAAGAGTGTTTCGGGAGAACGGATTATCCATAAGCAGGACTGAGGTTGGGGTACAGGGAGAGCAAGCAGTTGGCACATTCTATGTAAAAGATACTTCAGGGCAAGATGTGA</genome_strand>
        <mrna_strand>GGCAAGGGTTAATGTCCGAGATATCTGCTGTGCTGGCTGAGTTAGGATGCCATGTCTCTGGTGCCGTGGCATGGACACATAACAAGCGAGCAGCCTGCATTGTTTACATGGAAGATGATCTGAAGCATGGGCCAATCATGGACCCCTATAGAGTGGCACAAATACAGGCCCAGCTGGAGAATGTTGTTGAGGCCCACCATTATGAAGGGGAGCGACGGAGTGTGAGGTTGGCAGCCCCTGCAGCTAGCCAGACCCATACCGAAAGACGGCTTCATCAGTTGATGGCTGCTGACAGGGACTACGAACAATGTTGTTCCTGTGGTTATGACTCAAGTGGAGATGATGTAGCTCACAGGCAGAAGAAGGGATCTAATAGCACAGAAGTGAAGATAGAAAATTGCAAGGAGAGGGGCTACTCCATTGTTACTGTGAGGAGTATGGACAGACCCAAATTGCTATTTGACACTATCTGCACCTTGACAGACTTGCAATATGTCGTGTTCCATGCATCCATCAATTCTTTTGAATCCATTGCCATTCAG....................................................................................................................................GAATACTATGTGAGACACAAGAATGGATGGACTTTAGATTCAGAAAGTGAAAGACGGAAAATGATCCAAAATCTGATGGCTGCTACTGAGAGGAGAGTATCTCAT.........................................................................................................................GAATTGAGACTGGATGTTACTACTCAAAACAGGGTAGGACTGTTAGCAGATGTCACAAGAGTGTTTCGGGAGAACGGATTATCCATAAGCAGGACTGAGGTTGGGGTACAGGGAGAGCAAGCAGTTGGCACATTCTATGTAAAAGATACTTCAGGGCAAGATGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546904" ref_strand="+" ref_description="SGN-E546904 [TUS-70-I4]">
      <seq>ttttgactctgtctcctaatctccctttatatatatatctctgttttctttcatcaaaatctgaattttacattcaaatttcaagattccacctttctcagaaagcaaaagcaaatggagatttctgtttacaaaccctatggtgatcatgaatttcaatcactaattgaaagaattcaccctcccagggtgtgcattgataatgatacttgccgaaactgtactattgtgaaggttgatagtgcgaacaaacatggtatattgctggagatggtccaagttctgacggatctggacctactgattctaagatcatacatatcctctgatggtggctggttaatggatgttttccacgtaactgaccaacttgggaacaaaatcactgacgaaagcctcatccactacatcgaacaggctatttgtgcaagtagaagagggtccagggaagtccaaacatgtgttggtagaaatgtaaggcccaggcatgtctcaatggagcacacagctatggagatgacagcaatagatagaccagggttaatgtccgagatatctgctgtgctggctgagttaggatgccatgtctctggtgccgtggcatggacacataacaagcgagcagcctgcattgtttacatggaagatgatctgaagcatgggccaatcatggacccctatagagtggcacaaatacaggcccagctggagaatgttgttgaggcccaccatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="107521" stop="104671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107246" g_stop="107146" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.832"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107145" i_stop="106799" i_length="347">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106798" g_stop="106712" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="188" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106711" i_stop="106523" i_length="189">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106522" g_stop="106477" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="234" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106476" i_stop="105793" i_length="684">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105792" g_stop="105678" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="349" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105677" i_stop="105525" i_length="153">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105524" g_stop="105457" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="417" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105456" i_stop="105288" i_length="169">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="105287" g_stop="104971" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="734" r_length="317" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E546904" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107246" e_stop="107146"/>
          <exon e_start="106798" e_stop="106712"/>
          <exon e_start="106522" e_stop="106477"/>
          <exon e_start="105792" e_stop="105678"/>
          <exon e_start="105524" e_stop="105457"/>
          <exon e_start="105287" e_stop="104971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTAATCTCCCTTTATATATATATATATATATATATATCTGTTTTCTTTCATCAAAATCTGAATTTTACATTCAAATTTCAAGATTCCACCTTTCTCAGGTAAATTTTTAGTATCAATTCTTGGTCAAAATCTTGATTTGCATTCAATCTAACTCGCCGTTTTGCTGCGTTTTTTTTTTTTTGCTTTTTCAAGAAAGTAATGGGTTTCTACTTTTAGTAATTTGATTACTACTTCTTTTGAACTACTTGTCGTGTGTTTCTTGAAAATACTGAAAACTTGTATCGATTGACAACCAAGAAATCAGATGATAGTAGTAAAGATTTGTTCTTTTTCAAACTTGTTGATTCAAAAACAGGACAAACAGCTGCTAGCTGTATTATATTTGTATATACTATAAATTAATGTGGATTTTTCTCACATGTTGTTGTACATTTATCAATCACAGAAAGCAAAAGCAAATGGAGATTTCTGTTTACAAACCCTATGGTGATCATGAATTTCAATCACTAATTGAAAGAATTCACCCTCCCAGGTTTAGTTTTAACTTCAATCTTACTGTCTAATTTTTTTTTTATTTATAATTTTGATTGATACACCCACCTTGTTGGATTTCAGTATTGTGTAAGTAACTTTTATACTGCATAGAATTTGAGCCCTTGTTTATATTTTGGCTTCATTACTTAATTTGTTTCTTGTTGTGGCTTTGGCTTTGGCTGTTCAGGGTGTGCATTGATAATGATACTTGCCGAAACTGTACTATTGTGAAGGTAGGAAAAATCGTTATCATTTTCTCTTATTCTATATGTTGATTTCGATAATGACTTGATTTGATTTGTTTTGGTTTAAGTTTTGAGTACCTAACCAGCTAATGGATTCCCTCTTAGACCCCAAACAGTATATACTGGGGCCAACTTACAGAAGTATTAGCCTAAAAAGACCTGCATTACCATCATTTAGTTAGGCGGTAATCAATTTAGTTAGGCGATAATTTTATATATTTTTCTTGCTTTAAGATTAATCCATGTGCTGTTATAGTTGAACAATTTCTTAGAAGATAAATAATTATTCTAAATTCGCACAAGGAATTTCGGAGAAGCTTATGTTTGCCTACTTTCCACTTATAAAATTCAGATTGCAATACTGCAGCTGTTTATTGATTGTTAATTGAAATGCTATTTACACAAAAATACTTTCTTATAGGGTCCACTATCGTTAAGGGATTGGGAATATTCTTAACCAGTTCTGGTGTAACCAAAAAGCTAAACAGAAAATGATTGAGAAAACTGAAATTTAATTTCTGCTCAGTTTCAACTCCGCAAGCTGCAATTTCTTTTGTTGTGCAATATTGATCTGAGATGTTTAAATTGTGCAAACATGACGTGAGAATTCATATAGCTGAATCTTATTTGTCCGGGATTATGACGTAGTTATTGTTATTTTTTGGACCACAGGTTGATAGTGCGAACAAACATGGTATATTGCTGGAGATGGTCCAAGTTCTGACGGATCTGGACCTACTGATTCTAAGATCATACATATCCTCTGATGGTGGCTGGTTAATGGATGGTTAGTTCTCTTCTTTATATATGCCTTTTCTCCCTTACAGCTGGTTTGAATATTATAATCCAATTAAAAAAAAGATGCAAGTAACAACTTTCTGAGCCATAGCTGAGTCATTCACAACTATAGTATTTTGTTTTTTCTTGCATCTTTTTCCAGTTTTCCACGTAACTGACCAACTTGGGAACAAAATCACTGACGAAAGCCTCATCCACTACATCGAACAGGTTAGGGTATGCTTTATTCACTTGAATTATACTACTTCAAGAAACCCATATTGTGGGTTTTAGGATAAAGGGCCTATAAAGTGTGTTGGCAGCTGTTATCCAAAAATAGGTTTTTATTTTTCGTTTTACAAATTAAACATTAAACTAAAAACAACCTTAATGCTTACAGGCTATTTGTGCAAGTAGAAGAGGGTCCAGGGAAGTCCAAACATGTGTTGGTAGAAATGTAAGGCCCAGGCATGTCTCAATGGAGCACACAGCTATGGAGATGACAGCAATAGATAGACCAGGGTTAATGTCCGAGATATCTGCTGTGCTGGCTGAGTTAGGATGCCATGTCTCTGGTGCCGTGGCATGGACACATAACAAGCGAGCAGCCTGCATTGTTTACATGGAAGATGATCTGAAGCATGGGCCAATCATGGACCCCTATAGAGTGGCACAAATACAGGCCCAGCTGGAGAATGTTGTTGAGGCCCACCATTA</genome_strand>
        <mrna_strand>TTTTGACTCTGTCTCCTAATCTCCCTTTATATATATATCTCTGTTTTCTTTCATCAAAATCTGAATTTTACATTCAAATTTCAAGATTCCACCTTTCTCAG...........................................................................................................................................................................................................................................................................................................................................................AAAGCAAAAGCAAATGGAGATTTCTGTTTACAAACCCTATGGTGATCATGAATTTCAATCACTAATTGAAAGAATTCACCCTCCCAG.............................................................................................................................................................................................GGTGTGCATTGATAATGATACTTGCCGAAACTGTACTATTGTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATAGTGCGAACAAACATGGTATATTGCTGGAGATGGTCCAAGTTCTGACGGATCTGGACCTACTGATTCTAAGATCATACATATCCTCTGATGGTGGCTGGTTAATGGATG.........................................................................................................................................................TTTTCCACGTAACTGACCAACTTGGGAACAAAATCACTGACGAAAGCCTCATCCACTACATCGAACAG.........................................................................................................................................................................GCTATTTGTGCAAGTAGAAGAGGGTCCAGGGAAGTCCAAACATGTGTTGGTAGAAATGTAAGGCCCAGGCATGTCTCAATGGAGCACACAGCTATGGAGATGACAGCAATAGATAGACCAGGGTTAATGTCCGAGATATCTGCTGTGCTGGCTGAGTTAGGATGCCATGTCTCTGGTGCCGTGGCATGGACACATAACAAGCGAGCAGCCTGCATTGTTTACATGGAAGATGATCTGAAGCATGGGCCAATCATGGACCCCTATAGAGTGGCACAAATACAGGCCCAGCTGGAGAATGTTGTTGAGGCCCACCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E363392" ref_strand="+" ref_description="SGN-E363392 [cLPP-4-C13]">
      <seq>gttttgactctgtctcctaatctccctttatatatatatctctgttttctttcatcaaaatctgaattttacattcaaatttcaagattccacctttctcagaaagcaaaagcaaatggagatttctgtttacaaaccctatggtgatcatgaatttcaatcactaattgaaagaattcaccctcccagggtgtgcattgataatgatacttgccgaaactgtactattgtgaaggttgatagtgcgaacaaacatggtatattgctggagatggtccaagttctgacggatctggacctactgattctaagatcatacatatcctctgatggtggctggttaatggatgttttccacgtaactgaccaacttgggaacaaaatcactgacgaaagcctcatccactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0030E13-j0fao/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C02HBa0030E13.1" temp_strand="-" temp_description="C02HBa0030E13.1  AC226502.1 htgs_phase:3 submitted_to_sgn_as:C02HBa0030E13 sequenced_by:kribb upload_account_name:korea">
        <position start="107521" stop="105165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107248" g_stop="107146" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.835"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107145" i_stop="106799" i_length="347">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106798" g_stop="106712" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="189" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106711" i_stop="106523" i_length="189">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106522" g_stop="106477" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="235" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="106476" i_stop="105793" i_length="684">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105792" g_stop="105678" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="350" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105677" i_stop="105525" i_length="153">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105524" g_stop="105465" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="410" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0030E13.1" gen_strand="-" ref_id="SGN-E363392" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0030E13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107248" e_stop="107146"/>
          <exon e_start="106798" e_stop="106712"/>
          <exon e_start="106522" e_stop="106477"/>
          <exon e_start="105792" e_stop="105678"/>
          <exon e_start="105524" e_stop="105465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCCTAATCTCCCTTTATATATATATATATATATATATATCTGTTTTCTTTCATCAAAATCTGAATTTTACATTCAAATTTCAAGATTCCACCTTTCTCAGGTAAATTTTTAGTATCAATTCTTGGTCAAAATCTTGATTTGCATTCAATCTAACTCGCCGTTTTGCTGCGTTTTTTTTTTTTTGCTTTTTCAAGAAAGTAATGGGTTTCTACTTTTAGTAATTTGATTACTACTTCTTTTGAACTACTTGTCGTGTGTTTCTTGAAAATACTGAAAACTTGTATCGATTGACAACCAAGAAATCAGATGATAGTAGTAAAGATTTGTTCTTTTTCAAACTTGTTGATTCAAAAACAGGACAAACAGCTGCTAGCTGTATTATATTTGTATATACTATAAATTAATGTGGATTTTTCTCACATGTTGTTGTACATTTATCAATCACAGAAAGCAAAAGCAAATGGAGATTTCTGTTTACAAACCCTATGGTGATCATGAATTTCAATCACTAATTGAAAGAATTCACCCTCCCAGGTTTAGTTTTAACTTCAATCTTACTGTCTAATTTTTTTTTTATTTATAATTTTGATTGATACACCCACCTTGTTGGATTTCAGTATTGTGTAAGTAACTTTTATACTGCATAGAATTTGAGCCCTTGTTTATATTTTGGCTTCATTACTTAATTTGTTTCTTGTTGTGGCTTTGGCTTTGGCTGTTCAGGGTGTGCATTGATAATGATACTTGCCGAAACTGTACTATTGTGAAGGTAGGAAAAATCGTTATCATTTTCTCTTATTCTATATGTTGATTTCGATAATGACTTGATTTGATTTGTTTTGGTTTAAGTTTTGAGTACCTAACCAGCTAATGGATTCCCTCTTAGACCCCAAACAGTATATACTGGGGCCAACTTACAGAAGTATTAGCCTAAAAAGACCTGCATTACCATCATTTAGTTAGGCGGTAATCAATTTAGTTAGGCGATAATTTTATATATTTTTCTTGCTTTAAGATTAATCCATGTGCTGTTATAGTTGAACAATTTCTTAGAAGATAAATAATTATTCTAAATTCGCACAAGGAATTTCGGAGAAGCTTATGTTTGCCTACTTTCCACTTATAAAATTCAGATTGCAATACTGCAGCTGTTTATTGATTGTTAATTGAAATGCTATTTACACAAAAATACTTTCTTATAGGGTCCACTATCGTTAAGGGATTGGGAATATTCTTAACCAGTTCTGGTGTAACCAAAAAGCTAAACAGAAAATGATTGAGAAAACTGAAATTTAATTTCTGCTCAGTTTCAACTCCGCAAGCTGCAATTTCTTTTGTTGTGCAATATTGATCTGAGATGTTTAAATTGTGCAAACATGACGTGAGAATTCATATAGCTGAATCTTATTTGTCCGGGATTATGACGTAGTTATTGTTATTTTTTGGACCACAGGTTGATAGTGCGAACAAACATGGTATATTGCTGGAGATGGTCCAAGTTCTGACGGATCTGGACCTACTGATTCTAAGATCATACATATCCTCTGATGGTGGCTGGTTAATGGATGGTTAGTTCTCTTCTTTATATATGCCTTTTCTCCCTTACAGCTGGTTTGAATATTATAATCCAATTAAAAAAAAGATGCAAGTAACAACTTTCTGAGCCATAGCTGAGTCATTCACAACTATAGTATTTTGTTTTTTCTTGCATCTTTTTCCAGTTTTCCACGTAACTGACCAACTTGGGAACAAAATCACTGACGAAAGCCTCATCCACTACA</genome_strand>
        <mrna_strand>GT-TTTGACTCTGTCTCCTAATCTCCCTTTATATATATATCTCTGTTTTCTTTCATCAAAATCTGAATTTTACATTCAAATTTCAAGATTCCACCTTTCTCAG...........................................................................................................................................................................................................................................................................................................................................................AAAGCAAAAGCAAATGGAGATTTCTGTTTACAAACCCTATGGTGATCATGAATTTCAATCACTAATTGAAAGAATTCACCCTCCCAG.............................................................................................................................................................................................GGTGTGCATTGATAATGATACTTGCCGAAACTGTACTATTGTGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATAGTGCGAACAAACATGGTATATTGCTGGAGATGGTCCAAGTTCTGACGGATCTGGACCTACTGATTCTAAGATCATACATATCCTCTGATGGTGGCTGGTTAATGGATG.........................................................................................................................................................TTTTCCACGTAACTGACCAACTTGGGAACAAAATCACTGACGAAAGCCTCATCCACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>192</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="2962" PGL_stop="1296"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2962" e_stop="2698"/>
            <exon e_start="2611" e_stop="2540"/>
            <exon e_start="2454" e_stop="2062"/>
            <exon e_start="1965" e_stop="1296"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.934" acc_prob="0.140" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.875" e_score="1.000"/>
          <exon-intron don_prob="0.922" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2962" e_stop="2698" e_length="265"/>
          </exon>
          <intron i_serial="1" don_prob="0.934" acc_prob="0.140">
            <gDNA_intron_boundary i_start="2697" i_stop="2612" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2611" e_stop="2540" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="0.952" acc_prob="0.875">
            <gDNA_intron_boundary i_start="2539" i_stop="2455" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2454" e_stop="2062" e_length="393"/>
          </exon>
          <intron i_serial="3" don_prob="0.922" acc_prob="0.993">
            <gDNA_intron_boundary i_start="2061" i_stop="1966" i_length="96"/>
          </intron>
          <exon e_serial="4" e_score="0.985">
            <gDNA_exon_boundary e_start="1965" e_stop="1296" e_length="670"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2962" stop="2698"/>
              <exon start="2611" stop="2540"/>
              <exon start="2454" stop="2078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2961" stop="2698"/>
              <exon start="2611" stop="2540"/>
              <exon start="2454" stop="2364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2185" stop="2062"/>
              <exon start="1965" stop="1296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547080" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGTCACACAATGCATCATTATCTTTTAGAAAGTATTTTCATGTGTATAAAACTAGAGATTCTGTGAAATTTGATAATCTTATATGAGTTATAAGCTATTACACGATTTCTACTTTTTCTAGCTGTCTTCTTGCTTTTGATTTTCCTGTATAGTCAGTTCCTTCTAACGTATGTTTAAATCGATCATCAATGTCATGGTTAGACTAATGGAATGCTGCTTTGGCTCAGTTTTACTCATTTGGCACTGGCCTCTTGGATTTATAAT : AATAATCCTCTGCTGCTGGATTTTGACAACTCTGAGTTGGGTGCTGACTGGTTTTGATTTCTTTTTCCATAC : CTTTGCAGATGACACTTGCTCAGCTTTGAAGGACTTTCAACAGAATCCTCAGAACAATAGCTTGCAAATTATACTTCCCTGTGCAAATCCTGGAACTTCTGACAAAACGTTGGAGCAGATTGGCGCCACGGTTCATAATTTCATTACTCAGGTACTGTTATCTATAATATACAAGAAACAAGGATAGGAGCTTACATATATTCTTAGCATTATCTTTGTGTTTTCGATTTCCAGCTTAATTCTAAGCTGAGAGAGGTACAAGGATTAGGATTAAATGATATCGGGGAAAATAGCGTAGGAACAATTTGTGACCCCTTCTCTGGTGCACCTAATTACAGCTTCACACCTGATCTGTGCCCAAAGGATACTATCCCAATTGAAGATCTGAAATAT : GTTCTGTCAAAAGTCACATGTTATGAAGGAAATTCTTCAGGAAATTGCGCGGGTGAAGGAAGATTCATTCCACAGGCCTCATCTGTGATATTATTCGCTTATACTCAATCTATTCAAGACCTGATAGAAATATTCCCTGATTTGCTGAGCCTAAGTCAATGCTCCAAAGTAAAACAAGCATTCGCCAACATTTTACAGTACCAGTGCAGGCCATTTAGACGTTCAGCACGAGTACTATGGTCATCTATGTTGTCACTCTCCATTCTCATGATACTTTTAGTACTAACATTGATAGTAAAAGCTCACCAAGAAACTGGAAGAAGCTTTGATACATGCTCCATTACTCCTAAAAAAGTTGAAACAATACCAAAAACCTTGCCAGATTGCAGTAATTCTGCAGACAATGTACAGAAAATGTAGATGCTTTGCATTTTTTTTTCTTTTTTTGTAGTTATAGATGGAAGTATACAGTATACCCATTCCCCTGAAGTCGTAAGACGCCAAAAAAATGGGGGTTAAGTTATAGAAAATAGAAATAGAGAATTCTTACTAAACTTGTACTTGATATATTGTTCTTGTCATGTACACGACTTAATAACTGTGTACATATTTGACATGAACAGTGATTGATGGATACTAGAGGCTAACTTTGGCCTTGTAAATTTGCTCA</gDNA_template>
            <first_frame> L  S  H  N  A  S  L  S  F  R  K  Y  F  H  V  Y  K  T  R  D  S  V  K  F  D  N  L  I  *  V  I  S  Y  Y  T  I  S  T  F  S  S  C  L  L  A  F  D  F  P  V  *  S  V  P  S  N  V  C  L  N  R  S  S  M  S  W  L  D  *  W  N  A  A  L  A  Q  F  Y  S  F  G  T  G  L  L  D  L  *   : *  *  S  S  A  A  G  F  *  Q  L  *  V  G  C  *  L  V  L  I  S  F  S  I   : P  L  Q  M  T  L  A  Q  L  *  R  T  F  N  R  I  L  R  T  I  A  C  K  L  Y  F  P  V  Q  I  L  E  L  L  T  K  R  W  S  R  L  A  P  R  F  I  I  S  L  L  R  Y  C  Y  L  *  Y  T  R  N  K  D  R  S  L  H  I  F  L  A  L  S  L  C  F  R  F  P  A  *  F  *  A  E  R  G  T  R  I  R  I  K  *  Y  R  G  K  *  R  R  N  N  L  *  P  L  L  W  C  T  *  L  Q  L  H  T  *  S  V  P  K  G  Y  Y  P  N  *  R  S  E  I   : C  S  V  K  S  H  M  L  *  R  K  F  F  R  K  L  R  G  *  R  K  I  H  S  T  G  L  I  C  D  I  I  R  L  Y  S  I  Y  S  R  P  D  R  N  I  P  *  F  A  E  P  K  S  M  L  Q  S  K  T  S  I  R  Q  H  F  T  V  P  V  Q  A  I  *  T  F  S  T  S  T  M  V  I  Y  V  V  T  L  H  S  H  D  T  F  S  T  N  I  D  S  K  S  S  P  R  N  W  K  K  L  *  Y  M  L  H  Y  S  *  K  S  *  N  N  T  K  N  L  A  R  L  Q  *  F  C  R  Q  C  T  E  N  V  D  A  L  H  F  F  F  F  F  C  S  Y  R  W  K  Y  T  V  Y  P  F  P  *  S  R  K  T  P  K  K  W  G  L  S  Y  R  K  *  K  *  R  I  L  T  K  L  V  L  D  I  L  F  L  S  C  T  R  L  N  N  C  V  H  I  *  H  E  Q  *  L  M  D  T  R  G  *  L  W  P  C  K  F  A   </first_frame>
            <second_frame>  C  H  T  M  H  H  Y  L  L  E  S  I  F  M  C  I  K  L  E  I  L  *  N  L  I  I  L  Y  E  L  *  A  I  T  R  F  L  L  F  L  A  V  F  L  L  L  I  F  L  Y  S  Q  F  L  L  T  Y  V  *  I  D  H  Q  C  H  G  *  T  N  G  M  L  L  W  L  S  F  T  H  L  A  L  A  S  W  I  Y  N  :  N  N  P  L  L  L  D  F  D  N  S  E  L  G  A  D  W  F  *  F  L  F  P  Y  :  L  C  R  *  H  L  L  S  F  E  G  L  S  T  E  S  S  E  Q  *  L  A  N  Y  T  S  L  C  K  S  W  N  F  *  Q  N  V  G  A  D  W  R  H  G  S  *  F  H  Y  S  G  T  V  I  Y  N  I  Q  E  T  R  I  G  A  Y  I  Y  S  *  H  Y  L  C  V  F  D  F  Q  L  N  S  K  L  R  E  V  Q  G  L  G  L  N  D  I  G  E  N  S  V  G  T  I  C  D  P  F  S  G  A  P  N  Y  S  F  T  P  D  L  C  P  K  D  T  I  P  I  E  D  L  K  Y  :  V  L  S  K  V  T  C  Y  E  G  N  S  S  G  N  C  A  G  E  G  R  F  I  P  Q  A  S  S  V  I  L  F  A  Y  T  Q  S  I  Q  D  L  I  E  I  F  P  D  L  L  S  L  S  Q  C  S  K  V  K  Q  A  F  A  N  I  L  Q  Y  Q  C  R  P  F  R  R  S  A  R  V  L  W  S  S  M  L  S  L  S  I  L  M  I  L  L  V  L  T  L  I  V  K  A  H  Q  E  T  G  R  S  F  D  T  C  S  I  T  P  K  K  V  E  T  I  P  K  T  L  P  D  C  S  N  S  A  D  N  V  Q  K  M  *  M  L  C  I  F  F  S  F  F  V  V  I  D  G  S  I  Q  Y  T  H  S  P  E  V  V  R  R  Q  K  N  G  G  *  V  I  E  N  R  N  R  E  F  L  L  N  L  Y  L  I  Y  C  S  C  H  V  H  D  L  I  T  V  Y  I  F  D  M  N  S  D  *  W  I  L  E  A  N  F  G  L  V  N  L  L  </second_frame>
            <third_frame>   V  T  Q  C  I  I  I  F  *  K  V  F  S  C  V  *  N  *  R  F  C  E  I  *  *  S  Y  M  S  Y  K  L  L  H  D  F  Y  F  F  *  L  S  S  C  F  *  F  S  C  I  V  S  S  F  *  R  M  F  K  S  I  I  N  V  M  V  R  L  M  E  C  C  F  G  S  V  L  L  I  W  H  W  P  L  G  F  I  I :   I  I  L  C  C  W  I  L  T  T  L  S  W  V  L  T  G  F  D  F  F  F  H  T :   F  A  D  D  T  C  S  A  L  K  D  F  Q  Q  N  P  Q  N  N  S  L  Q  I  I  L  P  C  A  N  P  G  T  S  D  K  T  L  E  Q  I  G  A  T  V  H  N  F  I  T  Q  V  L  L  S  I  I  Y  K  K  Q  G  *  E  L  T  Y  I  L  S  I  I  F  V  F  S  I  S  S  L  I  L  S  *  E  R  Y  K  D  *  D  *  M  I  S  G  K  I  A  *  E  Q  F  V  T  P  S  L  V  H  L  I  T  A  S  H  L  I  C  A  Q  R  I  L  S  Q  L  K  I  *  N  M :   F  C  Q  K  S  H  V  M  K  E  I  L  Q  E  I  A  R  V  K  E  D  S  F  H  R  P  H  L  *  Y  Y  S  L  I  L  N  L  F  K  T  *  *  K  Y  S  L  I  C  *  A  *  V  N  A  P  K  *  N  K  H  S  P  T  F  Y  S  T  S  A  G  H  L  D  V  Q  H  E  Y  Y  G  H  L  C  C  H  S  P  F  S  *  Y  F  *  Y  *  H  *  *  *  K  L  T  K  K  L  E  E  A  L  I  H  A  P  L  L  L  K  K  L  K  Q  Y  Q  K  P  C  Q  I  A  V  I  L  Q  T  M  Y  R  K  C  R  C  F  A  F  F  F  L  F  L  *  L  *  M  E  V  Y  S  I  P  I  P  L  K  S  *  D  A  K  K  M  G  V  K  L  *  K  I  E  I  E  N  S  Y  *  T  C  T  *  Y  I  V  L  V  M  Y  T  T  *  *  L  C  T  Y  L  T  *  T  V  I  D  G  Y  *  R  L  T  L  A  L  *  I  C  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030E13.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2247" stop="2062"/>
                    <exon start="1965" stop="1546"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>603</number_coding_nucleotides>
                  <number_encoded_amino_acids>201</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HYLCVFDFQLNSKLREVQGLGLNDIGENSVGTICDPFSGAPNYSFTPDLCPKDTIPIEDLKYVLSKVTCYEGNSSGNCAGEGRFIPQASSVILFAYTQSIQDLIEIFPDLLSLSQCSKVKQAFANILQYQCRPFRRSARVLWSSMLSLSILMILLVLTLIVKAHQETGRSFDTCSITPKKVETIPKTLPDCSNSADNVQKM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030E13.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2795" stop="2698"/>
                    <exon start="2611" stop="2540"/>
                    <exon start="2454" stop="2268"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RMFKSIINVMVRLMECCFGSVLLIWHWPLGFIIIILCCWILTTLSWVLTGFDFFFHTFADDTCSALKDFQQNPQNNSLQIILPCANPGTSDKTLEQIGATVHNFITQVLLSIIYKKQG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="4677" PGL_stop="3241"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4677" e_stop="4340"/>
            <exon e_start="4243" e_stop="4056"/>
            <exon e_start="3394" e_stop="3241"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.841" acc_prob="0.980" e_score="0.982"/>
          <exon-intron don_prob="0.758" acc_prob="0.963" e_score="0.973"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="4677" e_stop="4340" e_length="338"/>
          </exon>
          <intron i_serial="1" don_prob="0.841" acc_prob="0.980">
            <gDNA_intron_boundary i_start="4339" i_stop="4244" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="4243" e_stop="4056" e_length="188"/>
          </exon>
          <intron i_serial="2" don_prob="0.758" acc_prob="0.963">
            <gDNA_intron_boundary i_start="4055" i_stop="3395" i_length="661"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="3394" e_stop="3241" e_length="154"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4677" stop="4340"/>
              <exon start="4243" stop="4056"/>
              <exon start="3394" stop="3241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4677" stop="4362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360835" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACACAAGAATAACCAAAAGTTTCTTACTAGCCACAAGCTATCCTAACCTTAATGATCAAGTCAAGGAATGAATTTTTCTCTTCTTTTATACCACTTTTACTTTTTATGTTTTGCCTCAAAAATATTCAACATCATACTATATCATCATCATGCCAAAATTACATGGAAGGGTTCTTCTTCCTTTCATTCTTTTATTAATTTCCACTAATATAATTGCCCAGAAATCTCTTGTATTTGGCTTCATTGATCGCGATCAAATTTCAAAAAGACCTGATCCTCTCAGACATTTTAAGTCATATAATGGGAGTTATAATCTTGGTGACAAGCACTATTGGGCT : TCTGCGGGTTTCACAGGCATACATGGATATGCAATTGCTGGGATTTGGTTGTTAGTTGGTTTGGGTTTTGGAAGTTACATGATTTTTAAGTATTTTCATGCCAATTCAACTACTTCAATGATTGAACATTCGCCTTCGTATTATATTTTGATGTTCTCGCTGGTTGTTCTGTTTACAATTCTTGCCAT : AGTTGCAAGCTGCGTTGCTTTGGCTGCAAACAATGGTTTTGAACATAGAGTAGAAAGGCTTCGCCGAACAATTTTTGATGCTGGTGGTGATACATGTCAATCCATCAGAAGGGTAATAAAGGTTTTGCTAAGTATGCAAACTCTTTTAAGCCCT</gDNA_template>
            <first_frame> T  Q  E  *  P  K  V  S  Y  *  P  Q  A  I  L  T  L  M  I  K  S  R  N  E  F  F  S  S  F  I  P  L  L  L  F  M  F  C  L  K  N  I  Q  H  H  T  I  S  S  S  C  Q  N  Y  M  E  G  F  F  F  L  S  F  F  Y  *  F  P  L  I  *  L  P  R  N  L  L  Y  L  A  S  L  I  A  I  K  F  Q  K  D  L  I  L  S  D  I  L  S  H  I  M  G  V  I  I  L  V  T  S  T  I  G  L :   L  R  V  S  Q  A  Y  M  D  M  Q  L  L  G  F  G  C  *  L  V  W  V  L  E  V  T  *  F  L  S  I  F  M  P  I  Q  L  L  Q  *  L  N  I  R  L  R  I  I  F  *  C  S  R  W  L  F  C  L  Q  F  L  P   : *  L  Q  A  A  L  L  W  L  Q  T  M  V  L  N  I  E  *  K  G  F  A  E  Q  F  L  M  L  V  V  I  H  V  N  P  S  E  G  *  *  R  F  C  *  V  C  K  L  F  *  A   </first_frame>
            <second_frame>  H  K  N  N  Q  K  F  L  T  S  H  K  L  S  *  P  *  *  S  S  Q  G  M  N  F  S  L  L  L  Y  H  F  Y  F  L  C  F  A  S  K  I  F  N  I  I  L  Y  H  H  H  A  K  I  T  W  K  G  S  S  S  F  H  S  F  I  N  F  H  *  Y  N  C  P  E  I  S  C  I  W  L  H  *  S  R  S  N  F  K  K  T  *  S  S  Q  T  F  *  V  I  *  W  E  L  *  S  W  *  Q  A  L  L  G   : F  C  G  F  H  R  H  T  W  I  C  N  C  W  D  L  V  V  S  W  F  G  F  W  K  L  H  D  F  *  V  F  S  C  Q  F  N  Y  F  N  D  *  T  F  A  F  V  L  Y  F  D  V  L  A  G  C  S  V  Y  N  S  C  H  :  S  C  K  L  R  C  F  G  C  K  Q  W  F  *  T  *  S  R  K  A  S  P  N  N  F  *  C  W  W  *  Y  M  S  I  H  Q  K  G  N  K  G  F  A  K  Y  A  N  S  F  K  P  </second_frame>
            <third_frame>   T  R  I  T  K  S  F  L  L  A  T  S  Y  P  N  L  N  D  Q  V  K  E  *  I  F  L  F  F  Y  T  T  F  T  F  Y  V  L  P  Q  K  Y  S  T  S  Y  Y  I  I  I  M  P  K  L  H  G  R  V  L  L  P  F  I  L  L  L  I  S  T  N  I  I  A  Q  K  S  L  V  F  G  F  I  D  R  D  Q  I  S  K  R  P  D  P  L  R  H  F  K  S  Y  N  G  S  Y  N  L  G  D  K  H  Y  W  A  :  S  A  G  F  T  G  I  H  G  Y  A  I  A  G  I  W  L  L  V  G  L  G  F  G  S  Y  M  I  F  K  Y  F  H  A  N  S  T  T  S  M  I  E  H  S  P  S  Y  Y  I  L  M  F  S  L  V  V  L  F  T  I  L  A  I :   V  A  S  C  V  A  L  A  A  N  N  G  F  E  H  R  V  E  R  L  R  R  T  I  F  D  A  G  G  D  T  C  Q  S  I  R  R  V  I  K  V  L  L  S  M  Q  T  L  L  S  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030E13.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4606" stop="4340"/>
                    <exon start="4243" stop="4056"/>
                    <exon start="3394" stop="3241"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFLFFYTTFTFYVLPQKYSTSYYIIIMPKLHGRVLLPFILLLISTNIIAQKSLVFGFIDRDQISKRPDPLRHFKSYNGSYNLGDKHYWASAGFTGIHGYAIAGIWLLVGLGFGSYMIFKYFHANSTTSMIEHSPSYYILMFSLVVLFTILAIVASCVALAANNGFEHRVERLRRTIFDAGGDTCQSIRRVIKVLLSMQTLLSP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="16758" PGL_stop="20990"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16758" e_stop="16917"/>
            <exon e_start="19259" e_stop="19340"/>
            <exon e_start="19464" e_stop="19496"/>
            <exon e_start="19605" e_stop="19726"/>
            <exon e_start="20126" e_stop="20287"/>
            <exon e_start="20607" e_stop="20990"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.879" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.873" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16758" e_stop="16917" e_length="160"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.879">
            <gDNA_intron_boundary i_start="16918" i_stop="19258" i_length="2341"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19259" e_stop="19340" e_length="82"/>
          </exon>
          <intron i_serial="2" don_prob="0.949" acc_prob="0.974">
            <gDNA_intron_boundary i_start="19341" i_stop="19463" i_length="123"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19464" e_stop="19496" e_length="33"/>
          </exon>
          <intron i_serial="3" don_prob="0.957" acc_prob="1.000">
            <gDNA_intron_boundary i_start="19497" i_stop="19604" i_length="108"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19605" e_stop="19726" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.873" acc_prob="0.951">
            <gDNA_intron_boundary i_start="19727" i_stop="20125" i_length="399"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="20126" e_stop="20287" e_length="162"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="20288" i_stop="20606" i_length="319"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="20607" e_stop="20990" e_length="384"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16758" stop="16917"/>
              <exon start="19259" stop="19340"/>
              <exon start="19464" stop="19496"/>
              <exon start="19605" stop="19726"/>
              <exon start="20126" stop="20215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347032" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16763" stop="16917"/>
              <exon start="19259" stop="19340"/>
              <exon start="19464" stop="19496"/>
              <exon start="19605" stop="19724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280074" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16763" stop="16917"/>
              <exon start="19259" stop="19340"/>
              <exon start="19464" stop="19496"/>
              <exon start="19605" stop="19691"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16775" stop="16917"/>
              <exon start="19259" stop="19340"/>
              <exon start="19464" stop="19496"/>
              <exon start="19605" stop="19726"/>
              <exon start="20126" stop="20245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16779" stop="16917"/>
              <exon start="19259" stop="19340"/>
              <exon start="19464" stop="19496"/>
              <exon start="19605" stop="19726"/>
              <exon start="20126" stop="20287"/>
              <exon start="20607" stop="20872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16821" stop="16917"/>
              <exon start="19259" stop="19340"/>
              <exon start="19464" stop="19496"/>
              <exon start="19605" stop="19726"/>
              <exon start="20126" stop="20287"/>
              <exon start="20607" stop="20761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16822" stop="16917"/>
              <exon start="19259" stop="19340"/>
              <exon start="19464" stop="19496"/>
              <exon start="19605" stop="19726"/>
              <exon start="20126" stop="20287"/>
              <exon start="20607" stop="20871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16824" stop="16917"/>
              <exon start="19259" stop="19340"/>
              <exon start="19464" stop="19496"/>
              <exon start="19605" stop="19726"/>
              <exon start="20126" stop="20287"/>
              <exon start="20607" stop="20876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16824" stop="16917"/>
              <exon start="19259" stop="19340"/>
              <exon start="19464" stop="19496"/>
              <exon start="19605" stop="19726"/>
              <exon start="20126" stop="20287"/>
              <exon start="20607" stop="20869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16824" stop="16917"/>
              <exon start="19259" stop="19340"/>
              <exon start="19464" stop="19496"/>
              <exon start="19605" stop="19726"/>
              <exon start="20126" stop="20287"/>
              <exon start="20607" stop="20869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16824" stop="16917"/>
              <exon start="19259" stop="19340"/>
              <exon start="19464" stop="19496"/>
              <exon start="19605" stop="19726"/>
              <exon start="20126" stop="20254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16825" stop="16917"/>
              <exon start="19259" stop="19340"/>
              <exon start="19464" stop="19496"/>
              <exon start="19605" stop="19726"/>
              <exon start="20126" stop="20287"/>
              <exon start="20607" stop="20627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16839" stop="16917"/>
              <exon start="19259" stop="19340"/>
              <exon start="19464" stop="19496"/>
              <exon start="19605" stop="19726"/>
              <exon start="20126" stop="20287"/>
              <exon start="20607" stop="20869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16839" stop="16917"/>
              <exon start="19259" stop="19340"/>
              <exon start="19464" stop="19496"/>
              <exon start="19605" stop="19726"/>
              <exon start="20126" stop="20157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16848" stop="16917"/>
              <exon start="19259" stop="19340"/>
              <exon start="19464" stop="19496"/>
              <exon start="19605" stop="19726"/>
              <exon start="20126" stop="20287"/>
              <exon start="20607" stop="20951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16848" stop="16917"/>
              <exon start="19259" stop="19340"/>
              <exon start="19464" stop="19496"/>
              <exon start="19605" stop="19726"/>
              <exon start="20126" stop="20287"/>
              <exon start="20607" stop="20829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16858" stop="16917"/>
              <exon start="19259" stop="19340"/>
              <exon start="19464" stop="19496"/>
              <exon start="19605" stop="19726"/>
              <exon start="20126" stop="20287"/>
              <exon start="20607" stop="20862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591240" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19606" stop="19726"/>
              <exon start="20126" stop="20287"/>
              <exon start="20607" stop="20654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20607" stop="20990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221803" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAATAAAGGGGGAAGGGGAAAAATACCGAGAGGGTATTTAATTGTGTTGTGTTTGAGAGGGATCTTTCTTCTTTATACTGATATTCAGATCTTTCTCTTTTACGATTCTTCGCATCAGCCATGGGTATCTGGGAAGCTTTTCTCAATTGGCTTCGAAG : CCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA : ACTGGTGGATACAGTGAAGACATGATACCAACT : GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGT : TTATGTTGTTGATGCTGCTGATCCTGATAACCTCAGCATATCAAGTAGTGAACTCCATGACCTGTTGAGCAAGCCATCTCTGAGTGGTATTCCACTGCTGGTGCTGGGAAACAAAATTGACAAGCCTGATTCCCTTTCCAAACAGGCTTTGACTGAGCAGAT : GGGATTGAAATCAATAACTGATAGAGAAGTGTGCTGCTATATGATCTCGTGCAAGAATTCCACCAATATTGACTCAGTCATTGATTGGCTTGTTAAGCACTCGAAATCAAAGAGCTAAAGATGACTTTAACTTTTTCTTTTTTTTTGTAGTGGTGCTGATCTGTATGATAAATTTGCTGAGGCTATTGGTTTTTTCTGCTGGTTTCTCCAGAGTTCTCTTGTACTGTAAATTAAGTTATTTTGTCTATTGAGTGAGTTGTTACATGTTTTTTTTCTTGCCATTTTTCGTCTCAACTCTCTCTAATTGTGTTTGCAATTCCTCTTATACTTTTTACTTGTCTGCTGCACGAGTTTGTGTGAAAGGAACGGATCTTTTTAAGTTTT</gDNA_template>
            <first_frame> T  N  K  G  G  R  G  K  I  P  R  G  Y  L  I  V  L  C  L  R  G  I  F  L  L  Y  T  D  I  Q  I  F  L  F  Y  D  S  S  H  Q  P  W  V  S  G  K  L  F  S  I  G  F  E   : A  S  S  L  S  R  K  W  S  F  H  *  *  D  C  K  M  Q  E  K  H  L  L  *  M  L  L  Q :   L  V  D  T  V  K  T  *  Y  Q  L :   W  D  L  T  C  A  K  *  R  K  E  M  S  L  *  N  C  G  T  L  E  V  N  P  D  S  A  V  C  G  S  V  T  V  V  L  F  L  L  *   : F  M  L  L  M  L  L  I  L  I  T  S  A  Y  Q  V  V  N  S  M  T  C  *  A  S  H  L  *  V  V  F  H  C  W  C  W  E  T  K  L  T  S  L  I  P  F  P  N  R  L  *  L  S  R   : W  D  *  N  Q  *  L  I  E  K  C  A  A  I  *  S  R  A  R  I  P  P  I  L  T  Q  S  L  I  G  L  L  S  T  R  N  Q  R  A  K  D  D  F  N  F  F  F  F  F  V  V  V  L  I  C  M  I  N  L  L  R  L  L  V  F  S  A  G  F  S  R  V  L  L  Y  C  K  L  S  Y  F  V  Y  *  V  S  C  Y  M  F  F  F  L  P  F  F  V  S  T  L  S  N  C  V  C  N  S  S  Y  T  F  Y  L  S  A  A  R  V  C  V  K  G  T  D  L  F  K  F  </first_frame>
            <second_frame>  Q  I  K  G  E  G  E  K  Y  R  E  G  I  *  L  C  C  V  *  E  G  S  F  F  F  I  L  I  F  R  S  F  S  F  T  I  L  R  I  S  H  G  Y  L  G  S  F  S  Q  L  A  S  K  :  P  L  L  *  A  G  N  G  A  F  I  D  R  I  A  K  C  R  K  N  I  S  C  K  C  Y  C   : N  W  W  I  Q  *  R  H  D  T  N   : C  G  I  *  H  A  Q  S  D  E  R  K  C  H  Y  K  I  V  G  P  W  R  S  T  Q  I  P  Q  Y  V  G  A  L  L  S  C  C  F  C  Y  S  :  L  C  C  *  C  C  *  S  *  *  P  Q  H  I  K  *  *  T  P  *  P  V  E  Q  A  I  S  E  W  Y  S  T  A  G  A  G  K  Q  N  *  Q  A  *  F  P  F  Q  T  G  F  D  *  A  D  :  G  I  E  I  N  N  *  *  R  S  V  L  L  Y  D  L  V  Q  E  F  H  Q  Y  *  L  S  H  *  L  A  C  *  A  L  E  I  K  E  L  K  M  T  L  T  F  S  F  F  L  *  W  C  *  S  V  *  *  I  C  *  G  Y  W  F  F  L  L  V  S  P  E  F  S  C  T  V  N  *  V  I  L  S  I  E  *  V  V  T  C  F  F  S  C  H  F  S  S  Q  L  S  L  I  V  F  A  I  P  L  I  L  F  T  C  L  L  H  E  F  V  *  K  E  R  I  F  L  S  F </second_frame>
            <third_frame>   K  *  R  G  K  G  K  N  T  E  R  V  F  N  C  V  V  F  E  R  D  L  S  S  L  Y  *  Y  S  D  L  S  L  L  R  F  F  A  S  A  M  G  I  W  E  A  F  L  N  W  L  R  S :   L  F  F  K  Q  E  M  E  L  S  L  I  G  L  Q  N  A  G  K  T  S  L  V  N  V  I  A  :  T  G  G  Y  S  E  D  M  I  P  T  :  V  G  F  N  M  R  K  V  T  K  G  N  V  T  I  K  L  W  D  L  G  G  Q  P  R  F  R  S  M  W  E  R  Y  C  R  A  V  S  A  I  V :   Y  V  V  D  A  A  D  P  D  N  L  S  I  S  S  S  E  L  H  D  L  L  S  K  P  S  L  S  G  I  P  L  L  V  L  G  N  K  I  D  K  P  D  S  L  S  K  Q  A  L  T  E  Q  M :   G  L  K  S  I  T  D  R  E  V  C  C  Y  M  I  S  C  K  N  S  T  N  I  D  S  V  I  D  W  L  V  K  H  S  K  S  K  S  *  R  *  L  *  L  F  L  F  F  C  S  G  A  D  L  Y  D  K  F  A  E  A  I  G  F  F  C  W  F  L  Q  S  S  L  V  L  *  I  K  L  F  C  L  L  S  E  L  L  H  V  F  F  L  A  I  F  R  L  N  S  L  *  L  C  L  Q  F  L  L  Y  F  L  L  V  C  C  T  S  L  C  E  R  N  G  S  F  *  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030E13.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16841" stop="16917"/>
                    <exon start="19259" stop="19340"/>
                    <exon start="19464" stop="19496"/>
                    <exon start="19605" stop="19726"/>
                    <exon start="20126" stop="20287"/>
                    <exon start="20607" stop="20724"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSDLSLLRFFASAMGIWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSISSSELHDLLSKPSLSGIPLLVLGNKIDKPDSLSKQALTEQMGLKSITDREVCCYMISCKNSTNIDSVIDWLVKHSKSKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="19057" e_stop="19340"/>
            <exon e_start="19464" e_stop="19496"/>
            <exon e_start="19605" e_stop="20098"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.949" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19057" e_stop="19340" e_length="284"/>
          </exon>
          <intron i_serial="1" don_prob="0.949" acc_prob="0.974">
            <gDNA_intron_boundary i_start="19341" i_stop="19463" i_length="123"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19464" e_stop="19496" e_length="33"/>
          </exon>
          <intron i_serial="2" don_prob="0.957" acc_prob="1.000">
            <gDNA_intron_boundary i_start="19497" i_stop="19604" i_length="108"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="19605" e_stop="20098" e_length="494"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19057" stop="19232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19057" stop="19232"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19058" stop="19340"/>
              <exon start="19464" stop="19496"/>
              <exon start="19605" stop="20098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19058" stop="19340"/>
              <exon start="19464" stop="19496"/>
              <exon start="19605" stop="20057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19058" stop="19340"/>
              <exon start="19464" stop="19496"/>
              <exon start="19605" stop="20052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19058" stop="19340"/>
              <exon start="19464" stop="19496"/>
              <exon start="19605" stop="19698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19064" stop="19340"/>
              <exon start="19464" stop="19496"/>
              <exon start="19605" stop="19899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19064" stop="19340"/>
              <exon start="19464" stop="19496"/>
              <exon start="19605" stop="19884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551157" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTAGTGTAAGGTCTTTCAATTATGGTGTTGCGTCTCATTATTACTTCAGAGTTTGGAACTTGACAGTTGAAACTTATTGTCATCTTCTTTCTGAGGTAGACTTAAAAGTATAAAGCATGTCAGAATTCCAATATTTTAAATGCATATGTCTCCTTTGGCTCTTATTAAATGATTCCTCATGTCAAAACTTGCTTGTTCCAGCCTCTTCTTTAAGCAGGAAATGGAGCTTTCATTGATAGGATTGCAAAATGCAGGAAAAACATCTCTTGTAAATGTTATTGCA : ACTGGTGGATACAGTGAAGACATGATACCAACT : GTGGGATTTAACATGCGCAAAGTGACGAAAGGAAATGTCACTATAAAATTGTGGGACCTTGGAGGTCAACCCAGATTCCGCAGTATGTGGGAGCGTTACTGTCGTGCTGTTTCTGCTATAGTGTATGCATCTCCTCTCCAGCTTATATTACTGTATTTGCTTTTACAGATAGATGTGAGATGAATCCATTTATACACTCATTTAGAAGATAACACATGATACTCTTATTACGAATTGAGATGAATCTTCTCCATGGTTTATTAATGAACAGTTTTATTGAATCTCATGGTTTGCCTGTCCTATTTGGTGCTTGACAGATTTATATTTTTATGCCTTCGATAGGTGGAATTCTTGATCTTGATCATTTATGTGTATTTAAAGGAATGATGCTAAATATGTTGCTCCCTTAAGAGTTTTAACAAATTTTAAGGACCTCAACTGTAATTTGATATACATGAATTCTTATTTTATAGCCTCGAGCTAATTTGGTTTCT</gDNA_template>
            <first_frame> F  S  V  R  S  F  N  Y  G  V  A  S  H  Y  Y  F  R  V  W  N  L  T  V  E  T  Y  C  H  L  L  S  E  V  D  L  K  V  *  S  M  S  E  F  Q  Y  F  K  C  I  C  L  L  W  L  L  L  N  D  S  S  C  Q  N  L  L  V  P  A  S  S  L  S  R  K  W  S  F  H  *  *  D  C  K  M  Q  E  K  H  L  L  *  M  L  L  Q :   L  V  D  T  V  K  T  *  Y  Q  L :   W  D  L  T  C  A  K  *  R  K  E  M  S  L  *  N  C  G  T  L  E  V  N  P  D  S  A  V  C  G  S  V  T  V  V  L  F  L  L  *  C  M  H  L  L  S  S  L  Y  Y  C  I  C  F  Y  R  *  M  *  D  E  S  I  Y  T  L  I  *  K  I  T  H  D  T  L  I  T  N  *  D  E  S  S  P  W  F  I  N  E  Q  F  Y  *  I  S  W  F  A  C  P  I  W  C  L  T  D  L  Y  F  Y  A  F  D  R  W  N  S  *  S  *  S  F  M  C  I  *  R  N  D  A  K  Y  V  A  P  L  R  V  L  T  N  F  K  D  L  N  C  N  L  I  Y  M  N  S  Y  F  I  A  S  S  *  F  G  F  </first_frame>
            <second_frame>  L  V  *  G  L  S  I  M  V  L  R  L  I  I  T  S  E  F  G  T  *  Q  L  K  L  I  V  I  F  F  L  R  *  T  *  K  Y  K  A  C  Q  N  S  N  I  L  N  A  Y  V  S  F  G  S  Y  *  M  I  P  H  V  K  T  C  L  F  Q  P  L  L  *  A  G  N  G  A  F  I  D  R  I  A  K  C  R  K  N  I  S  C  K  C  Y  C   : N  W  W  I  Q  *  R  H  D  T  N   : C  G  I  *  H  A  Q  S  D  E  R  K  C  H  Y  K  I  V  G  P  W  R  S  T  Q  I  P  Q  Y  V  G  A  L  L  S  C  C  F  C  Y  S  V  C  I  S  S  P  A  Y  I  T  V  F  A  F  T  D  R  C  E  M  N  P  F  I  H  S  F  R  R  *  H  M  I  L  L  L  R  I  E  M  N  L  L  H  G  L  L  M  N  S  F  I  E  S  H  G  L  P  V  L  F  G  A  *  Q  I  Y  I  F  M  P  S  I  G  G  I  L  D  L  D  H  L  C  V  F  K  G  M  M  L  N  M  L  L  P  *  E  F  *  Q  I  L  R  T  S  T  V  I  *  Y  T  *  I  L  I  L  *  P  R  A  N  L  V  S </second_frame>
            <third_frame>   *  C  K  V  F  Q  L  W  C  C  V  S  L  L  L  Q  S  L  E  L  D  S  *  N  L  L  S  S  S  F  *  G  R  L  K  S  I  K  H  V  R  I  P  I  F  *  M  H  M  S  P  L  A  L  I  K  *  F  L  M  S  K  L  A  C  S  S  L  F  F  K  Q  E  M  E  L  S  L  I  G  L  Q  N  A  G  K  T  S  L  V  N  V  I  A  :  T  G  G  Y  S  E  D  M  I  P  T  :  V  G  F  N  M  R  K  V  T  K  G  N  V  T  I  K  L  W  D  L  G  G  Q  P  R  F  R  S  M  W  E  R  Y  C  R  A  V  S  A  I  V  Y  A  S  P  L  Q  L  I  L  L  Y  L  L  L  Q  I  D  V  R  *  I  H  L  Y  T  H  L  E  D  N  T  *  Y  S  Y  Y  E  L  R  *  I  F  S  M  V  Y  *  *  T  V  L  L  N  L  M  V  C  L  S  Y  L  V  L  D  R  F  I  F  L  C  L  R  *  V  E  F  L  I  L  I  I  Y  V  Y  L  K  E  *  C  *  I  C  C  S  L  K  S  F  N  K  F  *  G  P  Q  L  *  F  D  I  H  E  F  L  F  Y  S  L  E  L  I  W  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030E13.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19230" stop="19340"/>
                    <exon start="19464" stop="19496"/>
                    <exon start="19605" stop="19787"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLMSKLACSSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYASPLQLILLYLLLQIDVR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="18653" e_stop="19029"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18653" e_stop="19029" e_length="377"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18653" stop="19029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243240" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGATTTGGCTGGACATTTTCCACCTAAATCCTTGTAGCTTTTGACTTTTCTAAGTTTCTTGCAAAAAAGTGAATTGTGTTCCATCGGAGTCATTGTTGTAGACAGACTCTTTGCCTGTTCAATGATTGACCACCTCGTATCAGAAAAATCAACTCTATATATGTGGTTGGAACACCTTTTAATATTTTTGAATGGACTAGACACTGACTGATGAAAGTGAAACCATTGATGCTTCCCCTTGACCTTTCATCATATACAAAACTTTTTCCTGAGGTTCAACTGGGTGATTCCAGAAATGACGACCAAAAATAACTTATATTTGACAGATTTTACAATGTCACCATCCATTATTCAGTCTTGTGTCATCCCACCATGC</gDNA_template>
            <first_frame> Q  I  W  L  D  I  F  H  L  N  P  C  S  F  *  L  F  *  V  S  C  K  K  V  N  C  V  P  S  E  S  L  L  *  T  D  S  L  P  V  Q  *  L  T  T  S  Y  Q  K  N  Q  L  Y  I  C  G  W  N  T  F  *  Y  F  *  M  D  *  T  L  T  D  E  S  E  T  I  D  A  S  P  *  P  F  I  I  Y  K  T  F  S  *  G  S  T  G  *  F  Q  K  *  R  P  K  I  T  Y  I  *  Q  I  L  Q  C  H  H  P  L  F  S  L  V  S  S  H  H   </first_frame>
            <second_frame>  R  F  G  W  T  F  S  T  *  I  L  V  A  F  D  F  S  K  F  L  A  K  K  *  I  V  F  H  R  S  H  C  C  R  Q  T  L  C  L  F  N  D  *  P  P  R  I  R  K  I  N  S  I  Y  V  V  G  T  P  F  N  I  F  E  W  T  R  H  *  L  M  K  V  K  P  L  M  L  P  L  D  L  S  S  Y  T  K  L  F  P  E  V  Q  L  G  D  S  R  N  D  D  Q  K  *  L  I  F  D  R  F  Y  N  V  T  I  H  Y  S  V  L  C  H  P  T  M  </second_frame>
            <third_frame>   D  L  A  G  H  F  P  P  K  S  L  *  L  L  T  F  L  S  F  L  Q  K  S  E  L  C  S  I  G  V  I  V  V  D  R  L  F  A  C  S  M  I  D  H  L  V  S  E  K  S  T  L  Y  M  W  L  E  H  L  L  I  F  L  N  G  L  D  T  D  *  *  K  *  N  H  *  C  F  P  L  T  F  H  H  I  Q  N  F  F  L  R  F  N  W  V  I  P  E  M  T  T  K  N  N  L  Y  L  T  D  F  T  M  S  P  S  I  I  Q  S  C  V  I  P  P  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0030E13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="25298" PGL_stop="26442"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25298" e_stop="25744"/>
            <exon e_start="26087" e_stop="26442"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="1.000" e_score="0.950"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="25298" e_stop="25744" e_length="447"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="1.000">
            <gDNA_intron_boundary i_start="25745" i_stop="26086" i_length="342"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="26087" e_stop="26442" e_length="356"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25298" stop="25744"/>
              <exon start="26087" stop="26419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25308" stop="25744"/>
              <exon start="26087" stop="26442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449777" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTACTGCAGATTGAGAAGCTGAAGATGCTACGTCGTACAAGACCCTTGGCAGTTACCTTTTCTGGCATGATTTTATCATCCATGGACGGTGGACATATTGATGGTTGTATATGTATATATGATTACAGTAAAAAGCACTGCAAACCTGACATAGGAATCATAAATGCCATGTTGAAGGTTTATGGCAAGAATGATATGTTCTATAAAGCTAAGGAATTATTTGAGTGGGCTAAGACAGAGAGTCATGGTCGTCAACTTAGCAAGGATGATTTTAGTTCTTCCCTTAGTCCAGATGCATACACATACACCTCGATGCTTGAGTCCTCTGCTTGCTCTCTCCAGTGGGAATACTTTGAGTATGTATACAAGGAGATGGCTTTAGCTGGGCATCTGCTTGATCAAAGCAGACATGCCTACCTCTTGGTGGAAGCATCAAAAGCTGGGAAG : GTGCATTTGCTAGAGCATGCCTTTGATGCAATTCTGGAAGTTGGTCATATACCTCATCCATCATTCTTCTTTGAGATTCTGTGTCAAGCTACATGTCAACATGATCATGAAAGAGCCCTTGCTCTAATTAAATCAATGGTTCATGTTCCATTTCAAGTCAGTAAACAAGAGTGGATTGACCTATTCAACAGCAACAATGGAAGAATTAGCCATTCTAGTTTGAGAGAATTATTGGATGTGATATGCAGCCACAGTTTGGGATCAGACGCGACCATTGTAAACTTGTGCAGGGCATTGAGATCTGTTTGTGGATCTTGCACGTCAAGTATGCTTATAATAGATGAACCTGCTAAATT</gDNA_template>
            <first_frame> L  L  Q  I  E  K  L  K  M  L  R  R  T  R  P  L  A  V  T  F  S  G  M  I  L  S  S  M  D  G  G  H  I  D  G  C  I  C  I  Y  D  Y  S  K  K  H  C  K  P  D  I  G  I  I  N  A  M  L  K  V  Y  G  K  N  D  M  F  Y  K  A  K  E  L  F  E  W  A  K  T  E  S  H  G  R  Q  L  S  K  D  D  F  S  S  S  L  S  P  D  A  Y  T  Y  T  S  M  L  E  S  S  A  C  S  L  Q  W  E  Y  F  E  Y  V  Y  K  E  M  A  L  A  G  H  L  L  D  Q  S  R  H  A  Y  L  L  V  E  A  S  K  A  G  K  :  V  H  L  L  E  H  A  F  D  A  I  L  E  V  G  H  I  P  H  P  S  F  F  F  E  I  L  C  Q  A  T  C  Q  H  D  H  E  R  A  L  A  L  I  K  S  M  V  H  V  P  F  Q  V  S  K  Q  E  W  I  D  L  F  N  S  N  N  G  R  I  S  H  S  S  L  R  E  L  L  D  V  I  C  S  H  S  L  G  S  D  A  T  I  V  N  L  C  R  A  L  R  S  V  C  G  S  C  T  S  S  M  L  I  I  D  E  P  A  K   </first_frame>
            <second_frame>  Y  C  R  L  R  S  *  R  C  Y  V  V  Q  D  P  W  Q  L  P  F  L  A  *  F  Y  H  P  W  T  V  D  I  L  M  V  V  Y  V  Y  M  I  T  V  K  S  T  A  N  L  T  *  E  S  *  M  P  C  *  R  F  M  A  R  M  I  C  S  I  K  L  R  N  Y  L  S  G  L  R  Q  R  V  M  V  V  N  L  A  R  M  I  L  V  L  P  L  V  Q  M  H  T  H  T  P  R  C  L  S  P  L  L  A  L  S  S  G  N  T  L  S  M  Y  T  R  R  W  L  *  L  G  I  C  L  I  K  A  D  M  P  T  S  W  W  K  H  Q  K  L  G  R :   C  I  C  *  S  M  P  L  M  Q  F  W  K  L  V  I  Y  L  I  H  H  S  S  L  R  F  C  V  K  L  H  V  N  M  I  M  K  E  P  L  L  *  L  N  Q  W  F  M  F  H  F  K  S  V  N  K  S  G  L  T  Y  S  T  A  T  M  E  E  L  A  I  L  V  *  E  N  Y  W  M  *  Y  A  A  T  V  W  D  Q  T  R  P  L  *  T  C  A  G  H  *  D  L  F  V  D  L  A  R  Q  V  C  L  *  *  M  N  L  L  N  </second_frame>
            <third_frame>   T  A  D  *  E  A  E  D  A  T  S  Y  K  T  L  G  S  Y  L  F  W  H  D  F  I  I  H  G  R  W  T  Y  *  W  L  Y  M  Y  I  *  L  Q  *  K  A  L  Q  T  *  H  R  N  H  K  C  H  V  E  G  L  W  Q  E  *  Y  V  L  *  S  *  G  I  I  *  V  G  *  D  R  E  S  W  S  S  T  *  Q  G  *  F  *  F  F  P  *  S  R  C  I  H  I  H  L  D  A  *  V  L  C  L  L  S  P  V  G  I  L  *  V  C  I  Q  G  D  G  F  S  W  A  S  A  *  S  K  Q  T  C  L  P  L  G  G  S  I  K  S  W  E   : G  A  F  A  R  A  C  L  *  C  N  S  G  S  W  S  Y  T  S  S  I  I  L  L  *  D  S  V  S  S  Y  M  S  T  *  S  *  K  S  P  C  S  N  *  I  N  G  S  C  S  I  S  S  Q  *  T  R  V  D  *  P  I  Q  Q  Q  Q  W  K  N  *  P  F  *  F  E  R  I  I  G  C  D  M  Q  P  Q  F  G  I  R  R  D  H  C  K  L  V  Q  G  I  E  I  C  L  W  I  L  H  V  K  Y  A  Y  N  R  *  T  C  *  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030E13.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25298" stop="25744"/>
                    <exon start="26087" stop="26440"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>801</number_coding_nucleotides>
                  <number_encoded_amino_acids>267</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLQIEKLKMLRRTRPLAVTFSGMILSSMDGGHIDGCICIYDYSKKHCKPDIGIINAMLKVYGKNDMFYKAKELFEWAKTESHGRQLSKDDFSSSLSPDAYTYTSMLESSACSLQWEYFEYVYKEMALAGHLLDQSRHAYLLVEASKAGKVHLLEHAFDAILEVGHIPHPSFFFEILCQATCQHDHERALALIKSMVHVPFQVSKQEWIDLFNSNNGRISHSSLRELLDVICSHSLGSDATIVNLCRALRSVCGSCTSSMLIIDEPAK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="27653" PGL_stop="28570"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27653" e_stop="28570"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="27653" e_stop="28570" e_length="918"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27653" stop="28433"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27653" stop="28278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27827" stop="28328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28095" stop="28570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E422504" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACGCCACCGTTTTAATTCAGTCCCCCCCTCTCCTTTCACCTTCTTCCCACTTCTCTAAAACCCTAATACAAAGTCTCTGCAATTACTGAAAATGGCATCTCTAGTTTCGAAAATCTCATTGACAAGACTCTTTTCCCGGATCCGTGCCCCATCAATAGCTTACACTCTATGCACAGCTACAGAAACCCGAACGCAGAAGTTGGAGCGGATCGCCGACCAACTTTTGGACCTGAATAAGCTCGAAAAGCATGACTACTCCATCCTCTTCCGGCACAAAATGGGTCTTAACCGATATGGACCTGCTGTTTCAGGTTTGGGCTCTGGATCTTCTTCTTCCGGCCCTGGTGCAGCGGCTGCGGATGCAAAGGTGGAAGAAAAAACCATCTTTGATGTAAAGCTTGACAAGTTTGATGCGGCGGCGAAGATTAAGGTGATTAAGGAAATTAGGTCTTTTACTGATTTGGGTTTAAAGGAAGCTAAGGAGTTGGTAGAAAAAGCGCCAGCAGTGGTGAAAAAGGGTGTAACGAAAGATGAAGCTAATGCCATTATAGAAAAGCTCAAGGCAATAGGTGCTACAGCGGTATTAGAATGAAATTTCCAATTTTGCCTCATGTTCTTATACTTTAAATTGTTATTTTTATGGGGAATAGAAATGGAAATTGTACTCCATTTTGACGAATTTTGGTTGCACATTGTTAGGGACTTCACAACATTGATTTGCTACTCATTTTTATGTGCCCGTTACTGTTTATAGTTCCTGGTTACTGCTACAATAAACTCTTATCTTAGTTCAGTTACTCTGTGCAATAGAGTAGATTGAAATTGTAATAACTTGCTGGGATTGAGCATGTTGATTATTTTGGATTGCAAGATCCATTGTTCTCCCTTTTAACATGGATTTACTTACAAATGGCTTA</gDNA_template>
            <first_frame> N  A  T  V  L  I  Q  S  P  P  L  L  S  P  S  S  H  F  S  K  T  L  I  Q  S  L  C  N  Y  *  K  W  H  L  *  F  R  K  S  H  *  Q  D  S  F  P  G  S  V  P  H  Q  *  L  T  L  Y  A  Q  L  Q  K  P  E  R  R  S  W  S  G  S  P  T  N  F  W  T  *  I  S  S  K  S  M  T  T  P  S  S  S  G  T  K  W  V  L  T  D  M  D  L  L  F  Q  V  W  A  L  D  L  L  L  P  A  L  V  Q  R  L  R  M  Q  R  W  K  K  K  P  S  L  M  *  S  L  T  S  L  M  R  R  R  R  L  R  *  L  R  K  L  G  L  L  L  I  W  V  *  R  K  L  R  S  W  *  K  K  R  Q  Q  W  *  K  R  V  *  R  K  M  K  L  M  P  L  *  K  S  S  R  Q  *  V  L  Q  R  Y  *  N  E  I  S  N  F  A  S  C  S  Y  T  L  N  C  Y  F  Y  G  E  *  K  W  K  L  Y  S  I  L  T  N  F  G  C  T  L  L  G  T  S  Q  H  *  F  A  T  H  F  Y  V  P  V  T  V  Y  S  S  W  L  L  L  Q  *  T  L  I  L  V  Q  L  L  C  A  I  E  *  I  E  I  V  I  T  C  W  D  *  A  C  *  L  F  W  I  A  R  S  I  V  L  P  F  N  M  D  L  L  T  N  G  L </first_frame>
            <second_frame>  T  P  P  F  *  F  S  P  P  L  S  F  H  L  L  P  T  S  L  K  P  *  Y  K  V  S  A  I  T  E  N  G  I  S  S  F  E  N  L  I  D  K  T  L  F  P  D  P  C  P  I  N  S  L  H  S  M  H  S  Y  R  N  P  N  A  E  V  G  A  D  R  R  P  T  F  G  P  E  *  A  R  K  A  *  L  L  H  P  L  P  A  Q  N  G  S  *  P  I  W  T  C  C  F  R  F  G  L  W  I  F  F  F  R  P  W  C  S  G  C  G  C  K  G  G  R  K  N  H  L  *  C  K  A  *  Q  V  *  C  G  G  E  D  *  G  D  *  G  N  *  V  F  Y  *  F  G  F  K  G  S  *  G  V  G  R  K  S  A  S  S  G  E  K  G  C  N  E  R  *  S  *  C  H  Y  R  K  A  Q  G  N  R  C  Y  S  G  I  R  M  K  F  P  I  L  P  H  V  L  I  L  *  I  V  I  F  M  G  N  R  N  G  N  C  T  P  F  *  R  I  L  V  A  H  C  *  G  L  H  N  I  D  L  L  L  I  F  M  C  P  L  L  F  I  V  P  G  Y  C  Y  N  K  L  L  S  *  F  S  Y  S  V  Q  *  S  R  L  K  L  *  *  L  A  G  I  E  H  V  D  Y  F  G  L  Q  D  P  L  F  S  L  L  T  W  I  Y  L  Q  M  A   </second_frame>
            <third_frame>   R  H  R  F  N  S  V  P  P  S  P  F  T  F  F  P  L  L  *  N  P  N  T  K  S  L  Q  L  L  K  M  A  S  L  V  S  K  I  S  L  T  R  L  F  S  R  I  R  A  P  S  I  A  Y  T  L  C  T  A  T  E  T  R  T  Q  K  L  E  R  I  A  D  Q  L  L  D  L  N  K  L  E  K  H  D  Y  S  I  L  F  R  H  K  M  G  L  N  R  Y  G  P  A  V  S  G  L  G  S  G  S  S  S  S  G  P  G  A  A  A  A  D  A  K  V  E  E  K  T  I  F  D  V  K  L  D  K  F  D  A  A  A  K  I  K  V  I  K  E  I  R  S  F  T  D  L  G  L  K  E  A  K  E  L  V  E  K  A  P  A  V  V  K  K  G  V  T  K  D  E  A  N  A  I  I  E  K  L  K  A  I  G  A  T  A  V  L  E  *  N  F  Q  F  C  L  M  F  L  Y  F  K  L  L  F  L  W  G  I  E  M  E  I  V  L  H  F  D  E  F  W  L  H  I  V  R  D  F  T  T  L  I  C  Y  S  F  L  C  A  R  Y  C  L  *  F  L  V  T  A  T  I  N  S  Y  L  S  S  V  T  L  C  N  R  V  D  *  N  C  N  N  L  L  G  L  S  M  L  I  I  L  D  C  K  I  H  C  S  P  F  *  H  G  F  T  Y  K  W  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030E13.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27712" stop="28245"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPNTKSLQLLKMASLVSKISLTRLFSRIRAPSIAYTLCTATETRTQKLERIADQLLDLNKLEKHDYSILFRHKMGLNRYGPAVSGLGSGSSSSGPGAAAADAKVEEKTIFDVKLDKFDAAAKIKVIKEIRSFTDLGLKEAKELVEKAPAVVKKGVTKDEANAIIEKLKAIGATAVLE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="30305" PGL_stop="30871"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30305" e_stop="30871"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="30305" e_stop="30871" e_length="567"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30305" stop="30871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419979" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATAGAACATACGGCATATTATACATTGATAATGCAAAACAACTTTGAATACTACCACAGAAGTTTAATCAATTATAGTAGATTGCTTCTCCTCTTTAAGTTGCACAGTAACTTGATGATCAACATTTTTTTACACTGACATACAAAAACATAAGAGTTCCAAAAGTAGTTGAACAAAATATTAGAACAAACAAGGTCAATATAAAAGTTTCTACTCCCCTGAAAAGTCAAAACCGGAGACCAATCCTAAGGAAACAACTGCAATATTAGAAGCTCCTGGTAAAGCTAGCAAGTTCTTAATCACTTTTGAGATATTGGCTGAAGAGATATTGCATCCATTGTGCCATGGCGCTATAACCAGTTTCTCAAGATTTTTTGCATGCTCAAGCAAGGACTTCAAAAATTCTGAAAGGCGCTCTGTTGCGTCAGCTTTGTGTTGACAACTACAACAGTTTGAAGTAACCTCAACATGCTTCAAATTCTGCAAGGAGCCTTTGAATATGTTTTCATGCAAGGAGAGGGATTTGTCTCCTAACCAATCAAACACTTCTTCTTCCAAGTATTCAT</gDNA_template>
            <first_frame> N  R  T  Y  G  I  L  Y  I  D  N  A  K  Q  L  *  I  L  P  Q  K  F  N  Q  L  *  *  I  A  S  P  L  *  V  A  Q  *  L  D  D  Q  H  F  F  T  L  T  Y  K  N  I  R  V  P  K  V  V  E  Q  N  I  R  T  N  K  V  N  I  K  V  S  T  P  L  K  S  Q  N  R  R  P  I  L  R  K  Q  L  Q  Y  *  K  L  L  V  K  L  A  S  S  *  S  L  L  R  Y  W  L  K  R  Y  C  I  H  C  A  M  A  L  *  P  V  S  Q  D  F  L  H  A  Q  A  R  T  S  K  I  L  K  G  A  L  L  R  Q  L  C  V  D  N  Y  N  S  L  K  *  P  Q  H  A  S  N  S  A  R  S  L  *  I  C  F  H  A  R  R  G  I  C  L  L  T  N  Q  T  L  L  L  P  S  I  H </first_frame>
            <second_frame>  I  E  H  T  A  Y  Y  T  L  I  M  Q  N  N  F  E  Y  Y  H  R  S  L  I  N  Y  S  R  L  L  L  L  F  K  L  H  S  N  L  M  I  N  I  F  L  H  *  H  T  K  T  *  E  F  Q  K  *  L  N  K  I  L  E  Q  T  R  S  I  *  K  F  L  L  P  *  K  V  K  T  G  D  Q  S  *  G  N  N  C  N  I  R  S  S  W  *  S  *  Q  V  L  N  H  F  *  D  I  G  *  R  D  I  A  S  I  V  P  W  R  Y  N  Q  F  L  K  I  F  C  M  L  K  Q  G  L  Q  K  F  *  K  A  L  C  C  V  S  F  V  L  T  T  T  T  V  *  S  N  L  N  M  L  Q  I  L  Q  G  A  F  E  Y  V  F  M  Q  G  E  G  F  V  S  *  P  I  K  H  F  F  F  Q  V  F   </second_frame>
            <third_frame>   *  N  I  R  H  I  I  H  *  *  C  K  T  T  L  N  T  T  T  E  V  *  S  I  I  V  D  C  F  S  S  L  S  C  T  V  T  *  *  S  T  F  F  Y  T  D  I  Q  K  H  K  S  S  K  S  S  *  T  K  Y  *  N  K  Q  G  Q  Y  K  S  F  Y  S  P  E  K  S  K  P  E  T  N  P  K  E  T  T  A  I  L  E  A  P  G  K  A  S  K  F  L  I  T  F  E  I  L  A  E  E  I  L  H  P  L  C  H  G  A  I  T  S  F  S  R  F  F  A  C  S  S  K  D  F  K  N  S  E  R  R  S  V  A  S  A  L  C  *  Q  L  Q  Q  F  E  V  T  S  T  C  F  K  F  C  K  E  P  L  N  M  F  S  C  K  E  R  D  L  S  P  N  Q  S  N  T  S  S  S  K  Y  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030E13.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30490" stop="30744"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKQGQYKSFYSPEKSKPETNPKETTAILEAPGKASKFLITFEILAEEILHPLCHGAITSFSRFFACSSKDFKNSERRSVASALC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="35329" PGL_stop="30808"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35329" e_stop="35169"/>
            <exon e_start="34638" e_stop="33559"/>
            <exon e_start="31669" e_stop="31502"/>
            <exon e_start="30890" e_stop="30808"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.969" e_score="0.988"/>
          <exon-intron don_prob="1.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="35329" e_stop="35169" e_length="161"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.969">
            <gDNA_intron_boundary i_start="35168" i_stop="34639" i_length="530"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34638" e_stop="33559" e_length="1080"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="33558" i_stop="31670" i_length="1889"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31669" e_stop="31502" e_length="168"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.980">
            <gDNA_intron_boundary i_start="31501" i_stop="30891" i_length="611"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="30890" e_stop="30808" e_length="83"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35329" stop="35169"/>
              <exon start="34638" stop="34298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35305" stop="35169"/>
              <exon start="34638" stop="34142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35275" stop="35169"/>
              <exon start="34638" stop="34415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34513" stop="33914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34157" stop="33559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34157" stop="33570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34157" stop="33697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34157" stop="33794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34081" stop="33559"/>
              <exon start="31669" stop="31502"/>
              <exon start="30890" stop="30814"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33765" stop="33559"/>
              <exon start="31669" stop="31502"/>
              <exon start="30890" stop="30808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGGGTGCGTTTGGCGGCAACTATATAAAACAATTTGGGGAGGCTCAATTATCATCACGAGTAAATTTTGGGTTCTAGGGTTTCAAATTTGATCATTCACCATTGTCGACGAAACACGATGGTTTAACTTCTGTTGAGAGGCGATTTATTTGTTCTTCCTG : GTACAGCAGTGGTTAAGCATATAGAGGTCTCTCATTCTTGCAATGAACTCGGAAAGGAAATGTAGTGTGACAACCATGGGCGACCAAGACCAATCTCCTAGCAGTTCTGGTGATGATGGACATTCTAAAGGCCAGATTCTTGAAAACCCACCTCAGGAAAAAGTGAACATTGAGACAGAAAGTGAAGAAACTGGCATTGATTGGATCAGCGAGCTACCTGACGCTCTAATTGTACAAATTCTCTCTCTATTGCCCATACAAGATGCTTTCAGAACATCTGTTCTCTCTAAACGTTGGCAATACCCCTGGACTTCTATAGACAACCTTATTTTTGACAACCGAAATACCAATTGGTCCAATAGAGAGAATGTGATTAATAAGTTCATTTCCTTCACAGACAATGTACTACCTCTCCTTTGCTGCTCTAATATTAAAAAGTTCTGTCTATATTTCCGATTTTGCCTTGTTGCTTCTTATAGTTCCAAAATTGACAAGTGGCTTGAAATTGTTTTGAAGAAAAAAGTGGAGGATCTTGACCTGGAAATATGGTATTATGATCAAAGCCCCTATGTCTTGCCACAAGTTCTCTGCAACAACTCATCCATTGTAAAATTTAATTGCGAGTTTTGCAGAATACCAGAAGAATGTGTACTAAACTGGACATCCCTGAAGAGTTTGACACTAACCTATTTGTTTCTTCGGGACGAACATGTTGAACAAATAGTAACAAATTGTCCTCAGTTGGAATTGTTGAAGCTATGTGAGTTTTGTGGTTTTCATCGCTTACATATAACTTCTCCAAAATGTAGGAGTCTGCAATTGATTGATCATGCCCATCCTGATGGAGATTGGGGTCCATTTGGCGGTGATTGTTCCTTCGAAGTAGTTGCCCCATATATTCAACATCTAAAGATTTCGGGGCATTTTGATAATGTGGAAATAAGACTTGGGGACCTTTCATCTTTAGTCATTGCTGATCTTACTTTCTCTGTTGATATTGTATATGACAATACCGTGGAACTTCTCTTGGCAAGTGTACGTTGTGCTAATGAGCTAATGATCCCATGCTGGTTTATCGAG : ATGATTTATGTGGCGGTGATAGAAAAGAAGAAAGATGTTCCATTTCTGATGCGGAAGTGCAAACGGTTGACGATAAATTCTTGGATTTCAAAAAATGCCATTCTCGGCATAGGTGTTCTCTTAAAGTCAACTCCTTATCTGGAGAATTTGACGATACTTCATGAAGAG : GGAGATTTCTTTGTCTGGGATGAATACTTGGAAGAAGAAGTGTTTGATTGGTTAGGAGACAAATCCCTCTCCTTGCATGAAAA</gDNA_template>
            <first_frame> R  G  A  F  G  G  N  Y  I  K  Q  F  G  E  A  Q  L  S  S  R  V  N  F  G  F  *  G  F  K  F  D  H  S  P  L  S  T  K  H  D  G  L  T  S  V  E  R  R  F  I  C  S  S  W :   Y  S  S  G  *  A  Y  R  G  L  S  F  L  Q  *  T  R  K  G  N  V  V  *  Q  P  W  A  T  K  T  N  L  L  A  V  L  V  M  M  D  I  L  K  A  R  F  L  K  T  H  L  R  K  K  *  T  L  R  Q  K  V  K  K  L  A  L  I  G  S  A  S  Y  L  T  L  *  L  Y  K  F  S  L  Y  C  P  Y  K  M  L  S  E  H  L  F  S  L  N  V  G  N  T  P  G  L  L  *  T  T  L  F  L  T  T  E  I  P  I  G  P  I  E  R  M  *  L  I  S  S  F  P  S  Q  T  M  Y  Y  L  S  F  A  A  L  I  L  K  S  S  V  Y  I  S  D  F  A  L  L  L  L  I  V  P  K  L  T  S  G  L  K  L  F  *  R  K  K  W  R  I  L  T  W  K  Y  G  I  M  I  K  A  P  M  S  C  H  K  F  S  A  T  T  H  P  L  *  N  L  I  A  S  F  A  E  Y  Q  K  N  V  Y  *  T  G  H  P  *  R  V  *  H  *  P  I  C  F  F  G  T  N  M  L  N  K  *  *  Q  I  V  L  S  W  N  C  *  S  Y  V  S  F  V  V  F  I  A  Y  I  *  L  L  Q  N  V  G  V  C  N  *  L  I  M  P  I  L  M  E  I  G  V  H  L  A  V  I  V  P  S  K  *  L  P  H  I  F  N  I  *  R  F  R  G  I  L  I  M  W  K  *  D  L  G  T  F  H  L  *  S  L  L  I  L  L  S  L  L  I  L  Y  M  T  I  P  W  N  F  S  W  Q  V  Y  V  V  L  M  S  *  *  S  H  A  G  L  S  R :   *  F  M  W  R  *  *  K  R  R  K  M  F  H  F  *  C  G  S  A  N  G  *  R  *  I  L  G  F  Q  K  M  P  F  S  A  *  V  F  S  *  S  Q  L  L  I  W  R  I  *  R  Y  F  M  K  R :   E  I  S  L  S  G  M  N  T  W  K  K  K  C  L  I  G  *  E  T  N  P  S  P  C  M  K  </first_frame>
            <second_frame>  G  V  R  L  A  A  T  I  *  N  N  L  G  R  L  N  Y  H  H  E  *  I  L  G  S  R  V  S  N  L  I  I  H  H  C  R  R  N  T  M  V  *  L  L  L  R  G  D  L  F  V  L  P   : G  T  A  V  V  K  H  I  E  V  S  H  S  C  N  E  L  G  K  E  M  *  C  D  N  H  G  R  P  R  P  I  S  *  Q  F  W  *  *  W  T  F  *  R  P  D  S  *  K  P  T  S  G  K  S  E  H  *  D  R  K  *  R  N  W  H  *  L  D  Q  R  A  T  *  R  S  N  C  T  N  S  L  S  I  A  H  T  R  C  F  Q  N  I  C  S  L  *  T  L  A  I  P  L  D  F  Y  R  Q  P  Y  F  *  Q  P  K  Y  Q  L  V  Q  *  R  E  C  D  *  *  V  H  F  L  H  R  Q  C  T  T  S  P  L  L  L  *  Y  *  K  V  L  S  I  F  P  I  L  P  C  C  F  L  *  F  Q  N  *  Q  V  A  *  N  C  F  E  E  K  S  G  G  S  *  P  G  N  M  V  L  *  S  K  P  L  C  L  A  T  S  S  L  Q  Q  L  I  H  C  K  I  *  L  R  V  L  Q  N  T  R  R  M  C  T  K  L  D  I  P  E  E  F  D  T  N  L  F  V  S  S  G  R  T  C  *  T  N  S  N  K  L  S  S  V  G  I  V  E  A  M  *  V  L  W  F  S  S  L  T  Y  N  F  S  K  M  *  E  S  A  I  D  *  S  C  P  S  *  W  R  L  G  S  I  W  R  *  L  F  L  R  S  S  C  P  I  Y  S  T  S  K  D  F  G  A  F  *  *  C  G  N  K  T  W  G  P  F  I  F  S  H  C  *  S  Y  F  L  C  *  Y  C  I  *  Q  Y  R  G  T  S  L  G  K  C  T  L  C  *  *  A  N  D  P  M  L  V  Y  R   : D  D  L  C  G  G  D  R  K  E  E  R  C  S  I  S  D  A  E  V  Q  T  V  D  D  K  F  L  D  F  K  K  C  H  S  R  H  R  C  S  L  K  V  N  S  L  S  G  E  F  D  D  T  S  *  R   : G  R  F  L  C  L  G  *  I  L  G  R  R  S  V  *  L  V  R  R  Q  I  P  L  L  A  *  K </second_frame>
            <third_frame>   G  C  V  W  R  Q  L  Y  K  T  I  W  G  G  S  I  I  I  T  S  K  F  W  V  L  G  F  Q  I  *  S  F  T  I  V  D  E  T  R  W  F  N  F  C  *  E  A  I  Y  L  F  F  L  :  V  Q  Q  W  L  S  I  *  R  S  L  I  L  A  M  N  S  E  R  K  C  S  V  T  T  M  G  D  Q  D  Q  S  P  S  S  S  G  D  D  G  H  S  K  G  Q  I  L  E  N  P  P  Q  E  K  V  N  I  E  T  E  S  E  E  T  G  I  D  W  I  S  E  L  P  D  A  L  I  V  Q  I  L  S  L  L  P  I  Q  D  A  F  R  T  S  V  L  S  K  R  W  Q  Y  P  W  T  S  I  D  N  L  I  F  D  N  R  N  T  N  W  S  N  R  E  N  V  I  N  K  F  I  S  F  T  D  N  V  L  P  L  L  C  C  S  N  I  K  K  F  C  L  Y  F  R  F  C  L  V  A  S  Y  S  S  K  I  D  K  W  L  E  I  V  L  K  K  K  V  E  D  L  D  L  E  I  W  Y  Y  D  Q  S  P  Y  V  L  P  Q  V  L  C  N  N  S  S  I  V  K  F  N  C  E  F  C  R  I  P  E  E  C  V  L  N  W  T  S  L  K  S  L  T  L  T  Y  L  F  L  R  D  E  H  V  E  Q  I  V  T  N  C  P  Q  L  E  L  L  K  L  C  E  F  C  G  F  H  R  L  H  I  T  S  P  K  C  R  S  L  Q  L  I  D  H  A  H  P  D  G  D  W  G  P  F  G  G  D  C  S  F  E  V  V  A  P  Y  I  Q  H  L  K  I  S  G  H  F  D  N  V  E  I  R  L  G  D  L  S  S  L  V  I  A  D  L  T  F  S  V  D  I  V  Y  D  N  T  V  E  L  L  L  A  S  V  R  C  A  N  E  L  M  I  P  C  W  F  I  E  :  M  I  Y  V  A  V  I  E  K  K  K  D  V  P  F  L  M  R  K  C  K  R  L  T  I  N  S  W  I  S  K  N  A  I  L  G  I  G  V  L  L  K  S  T  P  Y  L  E  N  L  T  I  L  H  E  E  :  G  D  F  F  V  W  D  E  Y  L  E  E  E  V  F  D  W  L  G  D  K  S  L  S  L  H  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030E13.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34614" stop="33559"/>
                    <exon start="31669" stop="31502"/>
                    <exon start="30890" stop="30810"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1305</number_coding_nucleotides>
                  <number_encoded_amino_acids>435</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSLILAMNSERKCSVTTMGDQDQSPSSSGDDGHSKGQILENPPQEKVNIETESEETGIDWISELPDALIVQILSLLPIQDAFRTSVLSKRWQYPWTSIDNLIFDNRNTNWSNRENVINKFISFTDNVLPLLCCSNIKKFCLYFRFCLVASYSSKIDKWLEIVLKKKVEDLDLEIWYYDQSPYVLPQVLCNNSSIVKFNCEFCRIPEECVLNWTSLKSLTLTYLFLRDEHVEQIVTNCPQLELLKLCEFCGFHRLHITSPKCRSLQLIDHAHPDGDWGPFGGDCSFEVVAPYIQHLKISGHFDNVEIRLGDLSSLVIADLTFSVDIVYDNTVELLLASVRCANELMIPCWFIEMIYVAVIEKKKDVPFLMRKCKRLTINSWISKNAILGIGVLLKSTPYLENLTILHEEGDFFVWDEYLEEEVFDWLGDKSLSLHE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="37788" PGL_stop="42470"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37788" e_stop="38017"/>
            <exon e_start="38925" e_stop="39013"/>
            <exon e_start="40706" e_stop="40835"/>
            <exon e_start="41605" e_stop="41634"/>
            <exon e_start="42115" e_stop="42470"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37788" e_stop="38017" e_length="230"/>
          </exon>
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              <exon start="40706" stop="40835"/>
              <exon start="41605" stop="41634"/>
              <exon start="42115" stop="42470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304150" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATACAAAGGGCAAAGTAATATCTGGCTTCATCACTTCGGCCGGATTCTATCATCTCAGGCAAATGGCTAGCTCTCTCCGACGACTAGCGACGCATTCCTCTCAAGCCGCCTGGCGATCTTCTGTGACGCCGCTATGTAGACAATTTGCGTCAGAAGCGTTGGTCGAAATCAAGCCCGGAGAGATCGGTATGGTCTCTGGTATTCCAGATGAACATCTTCGTAGAAGG : GTTGTGATTTTCTCTCCTGCTCGGACTGCTAGTCAACAAGGCTCTGGAAAAGTTGGCAGATGGAAAATCAATTTCATGTCTACCCAGAA : ATGGGAGAATCCATTGATGGGGTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATTCAGCTCTTAGTTTTGAGAGTGAAGAAGCTGCAAAAGCATTCGCTGAAAAGCATGGTTGGGAATATACG : GTGAAGAAACGACACACACCATTGTTAAAG : ATCAAGTCATATGCGGACAACTTTAAGTGGAAGGGACCTCCCAAGGCAGCAGAATAATTTATTTTCTACTTCAATTCAAGTACTTGAGGTGCTTGTGGATGTTCTACCTAATGCCCTGCATTCTGTTTTCTTTTTTTTTTTACCTTCTCTAAAGTTGGGCAGATCTCCTTCTTGAAGGATTTAATAAATCAAACTTATGAAAATCCACAAGTACATGCAATGTCTTAAAACCTTTGTGAAGCAATTTCCGGGTGTTTCTGTACTTGTGGGACATTGTGTCGTGTCAAAACACTAGTAGCCTTGTTTTTCTCTCCAAAAGAAATTAGCGTGTCAAAATACTTACGAACTGTGATTGT</gDNA_template>
            <first_frame> K  I  Q  R  A  K  *  Y  L  A  S  S  L  R  P  D  S  I  I  S  G  K  W  L  A  L  S  D  D  *  R  R  I  P  L  K  P  P  G  D  L  L  *  R  R  Y  V  D  N  L  R  Q  K  R  W  S  K  S  S  P  E  R  S  V  W  S  L  V  F  Q  M  N  I  F  V  E  G :   L  *  F  S  L  L  L  G  L  L  V  N  K  A  L  E  K  L  A  D  G  K  S  I  S  C  L  P  R   : N  G  R  I  H  *  W  G  G  H  P  Q  G  I  H  M  P  M  L  V  I  Q  L  L  V  L  R  V  K  K  L  Q  K  H  S  L  K  S  M  V  G  N  I  R :   *  R  N  D  T  H  H  C  *  R :   S  S  H  M  R  T  T  L  S  G  R  D  L  P  R  Q  Q  N  N  L  F  S  T  S  I  Q  V  L  E  V  L  V  D  V  L  P  N  A  L  H  S  V  F  F  F  F  L  P  S  L  K  L  G  R  S  P  S  *  R  I  *  *  I  K  L  M  K  I  H  K  Y  M  Q  C  L  K  T  F  V  K  Q  F  P  G  V  S  V  L  V  G  H  C  V  V  S  K  H  *  *  P  C  F  S  L  Q  K  K  L  A  C  Q  N  T  Y  E  L  *  L  </first_frame>
            <second_frame>  K  Y  K  G  Q  S  N  I  W  L  H  H  F  G  R  I  L  S  S  Q  A  N  G  *  L  S  P  T  T  S  D  A  F  L  S  S  R  L  A  I  F  C  D  A  A  M  *  T  I  C  V  R  S  V  G  R  N  Q  A  R  R  D  R  Y  G  L  W  Y  S  R  *  T  S  S  *  K   : G  C  D  F  L  S  C  S  D  C  *  S  T  R  L  W  K  S  W  Q  M  E  N  Q  F  H  V  Y  P  E  :  M  G  E  S  I  D  G  V  D  I  H  R  G  S  I  C  Q  C  W  *  F  S  S  *  F  *  E  *  R  S  C  K  S  I  R  *  K  A  W  L  G  I  Y   : G  E  E  T  T  H  T  I  V  K   : D  Q  V  I  C  G  Q  L  *  V  E  G  T  S  Q  G  S  R  I  I  Y  F  L  L  Q  F  K  Y  L  R  C  L  W  M  F  Y  L  M  P  C  I  L  F  S  F  F  F  Y  L  L  *  S  W  A  D  L  L  L  E  G  F  N  K  S  N  L  *  K  S  T  S  T  C  N  V  L  K  P  L  *  S  N  F  R  V  F  L  Y  L  W  D  I  V  S  C  Q  N  T  S  S  L  V  F  L  S  K  R  N  *  R  V  K  I  L  T  N  C  D  C </second_frame>
            <third_frame>   N  T  K  G  K  V  I  S  G  F  I  T  S  A  G  F  Y  H  L  R  Q  M  A  S  S  L  R  R  L  A  T  H  S  S  Q  A  A  W  R  S  S  V  T  P  L  C  R  Q  F  A  S  E  A  L  V  E  I  K  P  G  E  I  G  M  V  S  G  I  P  D  E  H  L  R  R  R  :  V  V  I  F  S  P  A  R  T  A  S  Q  Q  G  S  G  K  V  G  R  W  K  I  N  F  M  S  T  Q  K :   W  E  N  P  L  M  G  W  T  S  T  G  D  P  Y  A  N  V  G  D  S  A  L  S  F  E  S  E  E  A  A  K  A  F  A  E  K  H  G  W  E  Y  T  :  V  K  K  R  H  T  P  L  L  K  :  I  K  S  Y  A  D  N  F  K  W  K  G  P  P  K  A  A  E  *  F  I  F  Y  F  N  S  S  T  *  G  A  C  G  C  S  T  *  C  P  A  F  C  F  L  F  F  F  T  F  S  K  V  G  Q  I  S  F  L  K  D  L  I  N  Q  T  Y  E  N  P  Q  V  H  A  M  S  *  N  L  C  E  A  I  S  G  C  F  C  T  C  G  T  L  C  R  V  K  T  L  V  A  L  F  F  S  P  K  E  I  S  V  S  K  Y  L  R  T  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030E13.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37790" stop="38017"/>
                    <exon start="38925" stop="39013"/>
                    <exon start="40706" stop="40835"/>
                    <exon start="41605" stop="41634"/>
                    <exon start="42115" stop="42171"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NTKGKVISGFITSAGFYHLRQMASSLRRLATHSSQAAWRSSVTPLCRQFASEALVEIKPGEIGMVSGIPDEHLRRRVVIFSPARTASQQGSGKVGRWKINFMSTQKWENPLMGWTSTGDPYANVGDSALSFESEEAAKAFAEKHGWEYTVKKRHTPLLKIKSYADNFKWKGPPKAAE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="45564" PGL_stop="42234"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45564" e_stop="45453"/>
            <exon e_start="45343" e_stop="45184"/>
            <exon e_start="44749" e_stop="44677"/>
            <exon e_start="43524" e_stop="43160"/>
            <exon e_start="42257" e_stop="42234"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.958" acc_prob="0.980" e_score="0.973"/>
          <exon-intron don_prob="0.986" acc_prob="0.987" e_score="0.994"/>
          <exon-intron don_prob="0.993" acc_prob="0.604" e_score="0.986"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.962"/>
          <exon-only e_score="0.792"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="45564" e_stop="45453" e_length="112"/>
          </exon>
          <intron i_serial="1" don_prob="0.958" acc_prob="0.980">
            <gDNA_intron_boundary i_start="45452" i_stop="45344" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="45343" e_stop="45184" e_length="160"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.987">
            <gDNA_intron_boundary i_start="45183" i_stop="44750" i_length="434"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="44749" e_stop="44677" e_length="73"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.604">
            <gDNA_intron_boundary i_start="44676" i_stop="43525" i_length="1152"/>
          </intron>
          <exon e_serial="4" e_score="0.962">
            <gDNA_exon_boundary e_start="43524" e_stop="43160" e_length="365"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="43159" i_stop="42258" i_length="902"/>
          </intron>
          <exon e_serial="5" e_score="0.792">
            <gDNA_exon_boundary e_start="42257" e_stop="42234" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45564" stop="45453"/>
              <exon start="45343" stop="45184"/>
              <exon start="44749" stop="44677"/>
              <exon start="43524" stop="43160"/>
              <exon start="42257" stop="42234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45472" stop="45453"/>
              <exon start="45343" stop="45184"/>
              <exon start="44749" stop="44677"/>
              <exon start="43524" stop="43168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589549" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGATCTTTATGAAGGAGCACGGATGGCCAGGGTGTCAGATGTTCCTGGAATAAAGCAGTTGTTACAACCTCTGGAAGAGTCTGGAACATTGATCAGAAGAACTGAGGAAGAG : CTGGTGAAAGCACTGCATTCATTCATTATTGTGGAGAGAGAGGGTCATATTATAGCATGTGCAGCTCTCTTTCCTTACTTTGAAGAAAAATGTGGGGAGGTTGCTGCTATTGCTGTTTCTCCGGATTGTCGTGGCCAAGGACAGGGAGACAAGTTACTCG : ATTACATTGAAAAGAAAGCATCTTCTCTTGGATTGCAAATGCTCTTCCTTCTAACAACTCGCACAGCTGATTG : GTTTGTGAGGCGTGGCTTTTCTGAATGTTCCATTGATCATATACCAGAGCAAAGAAGGAAAAAAATCAATCTCGCCCGTAGATCAAAGTATTACATGAAGAAGCTGCTACCCGATAAAAGTGGTATACGTATCGATTGCACCTTCGCGTAGGAATTGAAGGTTTTTCATCTGTCTGTGTACTAGCTCTGCAACAAGCTCGTATTTAGTCAACCAGAAAATCAACCAATTGTTCCTGACAACTCAAGTCATATATAGGGGGGAGATTAATCTTTGTTGTTATTGCCTGCTATTATCTTTTGCGGTAGGTTTGGAAGAGTATTTTGATCGACGATGTATGCTTATATCTACGTTAATTGATCTTCAA : GTAAAAAAAAAAAGAAAACAGAAT</gDNA_template>
            <first_frame> R  S  L  *  R  S  T  D  G  Q  G  V  R  C  S  W  N  K  A  V  V  T  T  S  G  R  V  W  N  I  D  Q  K  N  *  G  R   : A  G  E  S  T  A  F  I  H  Y  C  G  E  R  G  S  Y  Y  S  M  C  S  S  L  S  L  L  *  R  K  M  W  G  G  C  C  Y  C  C  F  S  G  L  S  W  P  R  T  G  R  Q  V  T  R :   L  H  *  K  E  S  I  F  S  W  I  A  N  A  L  P  S  N  N  S  H  S  *  L  :  V  C  E  A  W  L  F  *  M  F  H  *  S  Y  T  R  A  K  K  E  K  N  Q  S  R  P  *  I  K  V  L  H  E  E  A  A  T  R  *  K  W  Y  T  Y  R  L  H  L  R  V  G  I  E  G  F  S  S  V  C  V  L  A  L  Q  Q  A  R  I  *  S  T  R  K  S  T  N  C  S  *  Q  L  K  S  Y  I  G  G  R  L  I  F  V  V  I  A  C  Y  Y  L  L  R  *  V  W  K  S  I  L  I  D  D  V  C  L  Y  L  R  *  L  I  F  K :   *  K  K  K  E  N  R   </first_frame>
            <second_frame>  D  L  Y  E  G  A  R  M  A  R  V  S  D  V  P  G  I  K  Q  L  L  Q  P  L  E  E  S  G  T  L  I  R  R  T  E  E  E  :  L  V  K  A  L  H  S  F  I  I  V  E  R  E  G  H  I  I  A  C  A  A  L  F  P  Y  F  E  E  K  C  G  E  V  A  A  I  A  V  S  P  D  C  R  G  Q  G  Q  G  D  K  L  L   : D  Y  I  E  K  K  A  S  S  L  G  L  Q  M  L  F  L  L  T  T  R  T  A  D  W :   F  V  R  R  G  F  S  E  C  S  I  D  H  I  P  E  Q  R  R  K  K  I  N  L  A  R  R  S  K  Y  Y  M  K  K  L  L  P  D  K  S  G  I  R  I  D  C  T  F  A  *  E  L  K  V  F  H  L  S  V  Y  *  L  C  N  K  L  V  F  S  Q  P  E  N  Q  P  I  V  P  D  N  S  S  H  I  *  G  G  D  *  S  L  L  L  L  P  A  I  I  F  C  G  R  F  G  R  V  F  *  S  T  M  Y  A  Y  I  Y  V  N  *  S  S   : S  K  K  K  K  K  T  E  </second_frame>
            <third_frame>   I  F  M  K  E  H  G  W  P  G  C  Q  M  F  L  E  *  S  S  C  Y  N  L  W  K  S  L  E  H  *  S  E  E  L  R  K  S :   W  *  K  H  C  I  H  S  L  L  W  R  E  R  V  I  L  *  H  V  Q  L  S  F  L  T  L  K  K  N  V  G  R  L  L  L  L  L  F  L  R  I  V  V  A  K  D  R  E  T  S  Y  S  :  I  T  L  K  R  K  H  L  L  L  D  C  K  C  S  S  F  *  Q  L  A  Q  L  I   : G  L  *  G  V  A  F  L  N  V  P  L  I  I  Y  Q  S  K  E  G  K  K  S  I  S  P  V  D  Q  S  I  T  *  R  S  C  Y  P  I  K  V  V  Y  V  S  I  A  P  S  R  R  N  *  R  F  F  I  C  L  C  T  S  S  A  T  S  S  Y  L  V  N  Q  K  I  N  Q  L  F  L  T  T  Q  V  I  Y  R  G  E  I  N  L  C  C  Y  C  L  L  L  S  F  A  V  G  L  E  E  Y  F  D  R  R  C  M  L  I  S  T  L  I  D  L  Q  :  V  K  K  K  R  K  Q  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030E13.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45563" stop="45453"/>
                    <exon start="45343" stop="45184"/>
                    <exon start="44749" stop="44677"/>
                    <exon start="43524" stop="43374"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLYEGARMARVSDVPGIKQLLQPLEESGTLIRRTEEELVKALHSFIIVEREGHIIACAALFPYFEEKCGEVAAIAVSPDCRGQGQGDKLLDYIEKKASSLGLQMLFLLTTRTADWFVRRGFSECSIDHIPEQRRKKINLARRSKYYMKKLLPDKSGIRIDCTFA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030E13.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43366" stop="43160"/>
                    <exon start="42257" stop="42234"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFFICLCTSSATSSYLVNQKINQLFLTTQVIYRGEINLCCYCLLLSFAVGLEEYFDRRCMLISTLIDLQVKKKRKQN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="45472" e_stop="45453"/>
            <exon e_start="45343" e_stop="45184"/>
            <exon e_start="44749" e_stop="44677"/>
            <exon e_start="43524" e_stop="43077"/>
            <exon e_start="42260" e_stop="42235"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.958" acc_prob="0.980" e_score="0.950"/>
          <exon-intron don_prob="0.986" acc_prob="0.987" e_score="0.981"/>
          <exon-intron don_prob="0.993" acc_prob="0.604" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.987"/>
          <exon-only e_score="0.769"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="45472" e_stop="45453" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="0.958" acc_prob="0.980">
            <gDNA_intron_boundary i_start="45452" i_stop="45344" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="45343" e_stop="45184" e_length="160"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.987">
            <gDNA_intron_boundary i_start="45183" i_stop="44750" i_length="434"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44749" e_stop="44677" e_length="73"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.604">
            <gDNA_intron_boundary i_start="44676" i_stop="43525" i_length="1152"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="43524" e_stop="43077" e_length="448"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="43076" i_stop="42261" i_length="816"/>
          </intron>
          <exon e_serial="5" e_score="0.769">
            <gDNA_exon_boundary e_start="42260" e_stop="42235" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45472" stop="45453"/>
              <exon start="45343" stop="45184"/>
              <exon start="44749" stop="44677"/>
              <exon start="43524" stop="43168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589549" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44723" stop="44677"/>
              <exon start="43524" stop="43077"/>
              <exon start="42260" stop="42235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553077" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGAAGAACTGAGGAAGAG : CTGGTGAAAGCACTGCATTCATTCATTATTGTGGAGAGAGAGGGTCATATTATAGCATGTGCAGCTCTCTTTCCTTACTTTGAAGAAAAATGTGGGGAGGTTGCTGCTATTGCTGTTTCTCCGGATTGTCGTGGCCAAGGACAGGGAGACAAGTTACTCG : ATTACATTGAAAAGAAAGCATCTTCTCTTGGATTGCAAATGCTCTTCCTTCTAACAACTCGCACAGCTGATTG : GTTTGTGAGGCGTGGCTTTTCTGAATGTTCCATTGATCATATACCAGAGCAAAGAAGGAAAAAAATCAATCTCGCCCGTAGATCAAAGTATTACATGAAGAAGCTGCTACCCGATAAAAGTGGTATACGTATCGATTGCACCTTCGCGTAGGAATTGAAGGTTTTTCATCTGTCTGTGTACTAGCTCTGCAACAAGCTCGTATTTAGTCAACCAGAAAATCAACCAATTGTTCCTGACAACTCAAGTCATATATAGGGGGGAGATTAATCTTTGTTGTTATTGCCTGCTATTATCTTTTGCGGTAGGTTTGGAAGAGTATTTTGATCGACGATGTATGCTTATATCTACGTTAATTGATCTTCAAATAGCGGACACCCCTTTGTTATCTTTTCTTTGTGGGTTCTTGGTCAAAATGTTTCAAAAAAATAAGTTTTTAAATAATGAGAA : AAGGTAAAAAAAAAAAGAAAACAGAA</gDNA_template>
            <first_frame> S  E  E  L  R  K  S :   W  *  K  H  C  I  H  S  L  L  W  R  E  R  V  I  L  *  H  V  Q  L  S  F  L  T  L  K  K  N  V  G  R  L  L  L  L  L  F  L  R  I  V  V  A  K  D  R  E  T  S  Y  S  :  I  T  L  K  R  K  H  L  L  L  D  C  K  C  S  S  F  *  Q  L  A  Q  L  I   : G  L  *  G  V  A  F  L  N  V  P  L  I  I  Y  Q  S  K  E  G  K  K  S  I  S  P  V  D  Q  S  I  T  *  R  S  C  Y  P  I  K  V  V  Y  V  S  I  A  P  S  R  R  N  *  R  F  F  I  C  L  C  T  S  S  A  T  S  S  Y  L  V  N  Q  K  I  N  Q  L  F  L  T  T  Q  V  I  Y  R  G  E  I  N  L  C  C  Y  C  L  L  L  S  F  A  V  G  L  E  E  Y  F  D  R  R  C  M  L  I  S  T  L  I  D  L  Q  I  A  D  T  P  L  L  S  F  L  C  G  F  L  V  K  M  F  Q  K  N  K  F  L  N  N  E  K :   R  *  K  K  K  E  N  R  </first_frame>
            <second_frame>  Q  K  N  *  G  R   : A  G  E  S  T  A  F  I  H  Y  C  G  E  R  G  S  Y  Y  S  M  C  S  S  L  S  L  L  *  R  K  M  W  G  G  C  C  Y  C  C  F  S  G  L  S  W  P  R  T  G  R  Q  V  T  R :   L  H  *  K  E  S  I  F  S  W  I  A  N  A  L  P  S  N  N  S  H  S  *  L  :  V  C  E  A  W  L  F  *  M  F  H  *  S  Y  T  R  A  K  K  E  K  N  Q  S  R  P  *  I  K  V  L  H  E  E  A  A  T  R  *  K  W  Y  T  Y  R  L  H  L  R  V  G  I  E  G  F  S  S  V  C  V  L  A  L  Q  Q  A  R  I  *  S  T  R  K  S  T  N  C  S  *  Q  L  K  S  Y  I  G  G  R  L  I  F  V  V  I  A  C  Y  Y  L  L  R  *  V  W  K  S  I  L  I  D  D  V  C  L  Y  L  R  *  L  I  F  K  *  R  T  P  L  C  Y  L  F  F  V  G  S  W  S  K  C  F  K  K  I  S  F  *  I  M  R   : K  G  K  K  K  K  K  T  E </second_frame>
            <third_frame>   R  R  T  E  E  E  :  L  V  K  A  L  H  S  F  I  I  V  E  R  E  G  H  I  I  A  C  A  A  L  F  P  Y  F  E  E  K  C  G  E  V  A  A  I  A  V  S  P  D  C  R  G  Q  G  Q  G  D  K  L  L   : D  Y  I  E  K  K  A  S  S  L  G  L  Q  M  L  F  L  L  T  T  R  T  A  D  W :   F  V  R  R  G  F  S  E  C  S  I  D  H  I  P  E  Q  R  R  K  K  I  N  L  A  R  R  S  K  Y  Y  M  K  K  L  L  P  D  K  S  G  I  R  I  D  C  T  F  A  *  E  L  K  V  F  H  L  S  V  Y  *  L  C  N  K  L  V  F  S  Q  P  E  N  Q  P  I  V  P  D  N  S  S  H  I  *  G  G  D  *  S  L  L  L  L  P  A  I  I  F  C  G  R  F  G  R  V  F  *  S  T  M  Y  A  Y  I  Y  V  N  *  S  S  N  S  G  H  P  F  V  I  F  S  L  W  V  L  G  Q  N  V  S  K  K  *  V  F  K  *  *  E  :  K  V  K  K  K  R  K  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030E13.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45470" stop="45453"/>
                    <exon start="45343" stop="45184"/>
                    <exon start="44749" stop="44677"/>
                    <exon start="43524" stop="43374"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>399</number_coding_nucleotides>
                  <number_encoded_amino_acids>133</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRTEEELVKALHSFIIVEREGHIIACAALFPYFEEKCGEVAAIAVSPDCRGQGQGDKLLDYIEKKASSLGLQMLFLLTTRTADWFVRRGFSECSIDHIPEQRRKKINLARRSKYYMKKLLPDKSGIRIDCTFA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030E13.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43366" stop="43077"/>
                    <exon start="42260" stop="42254"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFFICLCTSSATSSYLVNQKINQLFLTTQVIYRGEINLCCYCLLLSFAVGLEEYFDRRCMLISTLIDLQIADTPLLSFLCGFLVKMFQKNKFLNNEKR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="43151" PGL_stop="43514"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43151" e_stop="43514"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="43151" e_stop="43514" e_length="364"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43151" stop="43514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281393" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCCGCTATTTGAAGATCAATTAACGTAGATATAAGCATACATCGTCGATCAAAATACTCTTCCAAACCTACCGCAAAAGATAATAGCAGGCAATAACAACAAAGATTAATCTCCCCCCTATATATGACTTGAGTTGTCAGGAACAATTGGTTGATTTTCTGGTTGACTAAATACGAGCTTGTTGCAGAGCTAGTACACAGACAGATGAAAAACCTTCAATTCCTACGCGAAGGTGCAATCGATACGTATACCACTTTTATCGGGTAGCAGCTTCTTCATGTAATACTTTGATCTACGGGCGAGATTGATTTTTTTCCTTCTTTGCTCTGGTATATGATCAATGGAACATTCAGAAAAGCCACG</gDNA_template>
            <first_frame> V  R  Y  L  K  I  N  *  R  R  Y  K  H  T  S  S  I  K  I  L  F  Q  T  Y  R  K  R  *  *  Q  A  I  T  T  K  I  N  L  P  P  I  Y  D  L  S  C  Q  E  Q  L  V  D  F  L  V  D  *  I  R  A  C  C  R  A  S  T  Q  T  D  E  K  P  S  I  P  T  R  R  C  N  R  Y  V  Y  H  F  Y  R  V  A  A  S  S  C  N  T  L  I  Y  G  R  D  *  F  F  S  F  F  A  L  V  Y  D  Q  W  N  I  Q  K  S  H  </first_frame>
            <second_frame>  S  A  I  *  R  S  I  N  V  D  I  S  I  H  R  R  S  K  Y  S  S  K  P  T  A  K  D  N  S  R  Q  *  Q  Q  R  L  I  S  P  L  Y  M  T  *  V  V  R  N  N  W  L  I  F  W  L  T  K  Y  E  L  V  A  E  L  V  H  R  Q  M  K  N  L  Q  F  L  R  E  G  A  I  D  T  Y  T  T  F  I  G  *  Q  L  L  H  V  I  L  *  S  T  G  E  I  D  F  F  P  S  L  L  W  Y  M  I  N  G  T  F  R  K  A  T </second_frame>
            <third_frame>   P  L  F  E  D  Q  L  T  *  I  *  A  Y  I  V  D  Q  N  T  L  P  N  L  P  Q  K  I  I  A  G  N  N  N  K  D  *  S  P  P  Y  I  *  L  E  L  S  G  T  I  G  *  F  S  G  *  L  N  T  S  L  L  Q  S  *  Y  T  D  R  *  K  T  F  N  S  Y  A  K  V  Q  S  I  R  I  P  L  L  S  G  S  S  F  F  M  *  Y  F  D  L  R  A  R  L  I  F  F  L  L  C  S  G  I  *  S  M  E  H  S  E  K  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0030E13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="49754" PGL_stop="46126"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49754" e_stop="49259"/>
            <exon e_start="49154" e_stop="49067"/>
            <exon e_start="48519" e_stop="48314"/>
            <exon e_start="48144" e_stop="47993"/>
            <exon e_start="47152" e_stop="46732"/>
            <exon e_start="46223" e_stop="46126"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="0.979"/>
          <exon-intron don_prob="0.999" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.973" e_score="0.995"/>
          <exon-intron don_prob="0.458" acc_prob="0.999" e_score="0.987"/>
          <exon-intron don_prob="0.974" acc_prob="0.999" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="49754" e_stop="49259" e_length="496"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="49258" i_stop="49155" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="49154" e_stop="49067" e_length="88"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.972">
            <gDNA_intron_boundary i_start="49066" i_stop="48520" i_length="547"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="48519" e_stop="48314" e_length="206"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.973">
            <gDNA_intron_boundary i_start="48313" i_stop="48145" i_length="169"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="48144" e_stop="47993" e_length="152"/>
          </exon>
          <intron i_serial="4" don_prob="0.458" acc_prob="0.999">
            <gDNA_intron_boundary i_start="47992" i_stop="47153" i_length="840"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="47152" e_stop="46732" e_length="421"/>
          </exon>
          <intron i_serial="5" don_prob="0.974" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46731" i_stop="46224" i_length="508"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="46223" e_stop="46126" e_length="98"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49754" stop="49259"/>
              <exon start="49154" stop="49067"/>
              <exon start="48519" stop="48445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49754" stop="49259"/>
              <exon start="49154" stop="49070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49737" stop="49259"/>
              <exon start="49154" stop="49067"/>
              <exon start="48519" stop="48426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49734" stop="49259"/>
              <exon start="49154" stop="49067"/>
              <exon start="48519" stop="48314"/>
              <exon start="48144" stop="48132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49711" stop="49303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49711" stop="49483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49708" stop="49259"/>
              <exon start="49154" stop="49113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49108" stop="49067"/>
              <exon start="48519" stop="48314"/>
              <exon start="48144" stop="47993"/>
              <exon start="47152" stop="47088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49107" stop="49067"/>
              <exon start="48519" stop="48314"/>
              <exon start="48144" stop="47993"/>
              <exon start="47152" stop="46745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47109" stop="46732"/>
              <exon start="46223" stop="46126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302074" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAGTCAAACATATACGTGGCGAGTCGTTGGTTACCGGTATAAATTCTTCCAACTCCACCTACCCCCAACGCCACCCCATTCACCAGGCAGCTGCCATAGCCCGCTGCCGTCAAAAAGCCCACTACAGTATCGGAGTTCGGCGTGCATTTGCTTGCTCAAACCTGAGCGACCATGGCTGCTTTTTGTGGCAACAGTATTTGGACTCCTCAAGCTCGAAATTGTTTTCAGCGGGGAATAACTTGTTCTAATTCGTTAAAGTTTTTACCTTTTCAATTTAGTTGTTGTAAGAGATTGTGGGGTAGGTCATTGAAGTGCAGGGTTTTGGGCGAAACGGACGATGTGGGATTTGAAGTGAGTAGTGCCATAAAAGACGACCTATTTGTTGGTTTTTTCAGAGAAGCATGGCCTTATTTTCTTGCACATCGAGGAAGCACGTTTGTTGTTTTAATCTCAGCTGAAATTGTTGATAGCCCTCATTTGGATCATCTTCTCATG : GATATCTCCCTTCTTCATGGTCTGGGAATCAAATTTGTTCTTGTGCCAGGAACTCATGTTCAGATTGACCGGCTTCTGACTGAAAGGG : GAAGTGAGGCCAAGTATGTAGGCCGCTACAGAATTACAGACCCTGATTCACTCGAGGCAGCTATGGATACATCCGGAAGAATTCGTCTTATGATAGAGGCAAAGTTGTCACCTGGCCCTTCATTGACTGGTGTCCGCCGACATGGAGATAATAGTCGCTGGCATGATAGTGTTGGTGTTGCCAGTGGTAATTTTCTATCAGCGAAG : AAAAGAGGAGTTGTCGAAGGAATTGATTATTCTTCAACTGGTGAAGTAAAGAAGATAGATGTTTCTCGAATTCGCGAGAGGCTTGATCAGGATTCCATAGTGCTATTGAGCAATCTTGGTTATTCCAGCTCTGGAGAAGTATTAAACTGCAA : CACATACGAAGTTGCAACAGCTTGTGCCTTAGCTCTAGGAGCAGAAAAACTAATTTGTATCATAGACGGCCCAATTCTTGATGAGTCGAGCCGTCTGATTCGTTTCTTAACTCTTCAAGATGCTGATATGCTGGTCCGCAGACGAGCTGAGCAAAGTGAGACTGCTGCTAATTATGTAAAAGCTGTTAGTCAGGAGGACTTCAATCGTTTAGGTTACCATGGTTCCAATGGATCGCTCCCTTCCCAAAATGGCGATGTTTATAGCCAAAGATATAATCCGACATTTCAGAATGGCATTGGTTTTGACAATGGAAATGGGCTTTGGTCTAGTGAACAAGGTTTTGCCATTGGAGGACAAGAGAAACTAAGCCGATCAAATGGTTATCTCTCAGAATTAGCTGCTGCTGCTTTTGTTTGCCGA : GGAGGTGTTCAAAGAGTGCACCTGCTGGATGGCACTATTGGTGGAGTTTTATTAAAGGAATTGTTCCAAAGAGATGGAGTTGGGACAATGGTTGCTAG</gDNA_template>
            <first_frame> P  V  K  H  I  R  G  E  S  L  V  T  G  I  N  S  S  N  S  T  Y  P  Q  R  H  P  I  H  Q  A  A  A  I  A  R  C  R  Q  K  A  H  Y  S  I  G  V  R  R  A  F  A  C  S  N  L  S  D  H  G  C  F  L  W  Q  Q  Y  L  D  S  S  S  S  K  L  F  S  A  G  N  N  L  F  *  F  V  K  V  F  T  F  S  I  *  L  L  *  E  I  V  G  *  V  I  E  V  Q  G  F  G  R  N  G  R  C  G  I  *  S  E  *  C  H  K  R  R  P  I  C  W  F  F  Q  R  S  M  A  L  F  S  C  T  S  R  K  H  V  C  C  F  N  L  S  *  N  C  *  *  P  S  F  G  S  S  S  H   : G  Y  L  P  S  S  W  S  G  N  Q  I  C  S  C  A  R  N  S  C  S  D  *  P  A  S  D  *  K  G :   K  *  G  Q  V  C  R  P  L  Q  N  Y  R  P  *  F  T  R  G  S  Y  G  Y  I  R  K  N  S  S  Y  D  R  G  K  V  V  T  W  P  F  I  D  W  C  P  P  T  W  R  *  *  S  L  A  *  *  C  W  C  C  Q  W  *  F  S  I  S  E   : E  K  R  S  C  R  R  N  *  L  F  F  N  W  *  S  K  E  D  R  C  F  S  N  S  R  E  A  *  S  G  F  H  S  A  I  E  Q  S  W  L  F  Q  L  W  R  S  I  K  L  Q  :  H  I  R  S  C  N  S  L  C  L  S  S  R  S  R  K  T  N  L  Y  H  R  R  P  N  S  *  *  V  E  P  S  D  S  F  L  N  S  S  R  C  *  Y  A  G  P  Q  T  S  *  A  K  *  D  C  C  *  L  C  K  S  C  *  S  G  G  L  Q  S  F  R  L  P  W  F  Q  W  I  A  P  F  P  K  W  R  C  L  *  P  K  I  *  S  D  I  S  E  W  H  W  F  *  Q  W  K  W  A  L  V  *  *  T  R  F  C  H  W  R  T  R  E  T  K  P  I  K  W  L  S  L  R  I  S  C  C  C  F  C  L  P   : R  R  C  S  K  S  A  P  A  G  W  H  Y  W  W  S  F  I  K  G  I  V  P  K  R  W  S  W  D  N  G  C  * </first_frame>
            <second_frame>  Q  S  N  I  Y  V  A  S  R  W  L  P  V  *  I  L  P  T  P  P  T  P  N  A  T  P  F  T  R  Q  L  P  *  P  A  A  V  K  K  P  T  T  V  S  E  F  G  V  H  L  L  A  Q  T  *  A  T  M  A  A  F  C  G  N  S  I  W  T  P  Q  A  R  N  C  F  Q  R  G  I  T  C  S  N  S  L  K  F  L  P  F  Q  F  S  C  C  K  R  L  W  G  R  S  L  K  C  R  V  L  G  E  T  D  D  V  G  F  E  V  S  S  A  I  K  D  D  L  F  V  G  F  F  R  E  A  W  P  Y  F  L  A  H  R  G  S  T  F  V  V  L  I  S  A  E  I  V  D  S  P  H  L  D  H  L  L  M  :  D  I  S  L  L  H  G  L  G  I  K  F  V  L  V  P  G  T  H  V  Q  I  D  R  L  L  T  E  R   : G  S  E  A  K  Y  V  G  R  Y  R  I  T  D  P  D  S  L  E  A  A  M  D  T  S  G  R  I  R  L  M  I  E  A  K  L  S  P  G  P  S  L  T  G  V  R  R  H  G  D  N  S  R  W  H  D  S  V  G  V  A  S  G  N  F  L  S  A  K  :  K  R  G  V  V  E  G  I  D  Y  S  S  T  G  E  V  K  K  I  D  V  S  R  I  R  E  R  L  D  Q  D  S  I  V  L  L  S  N  L  G  Y  S  S  S  G  E  V  L  N  C  N :   T  Y  E  V  A  T  A  C  A  L  A  L  G  A  E  K  L  I  C  I  I  D  G  P  I  L  D  E  S  S  R  L  I  R  F  L  T  L  Q  D  A  D  M  L  V  R  R  R  A  E  Q  S  E  T  A  A  N  Y  V  K  A  V  S  Q  E  D  F  N  R  L  G  Y  H  G  S  N  G  S  L  P  S  Q  N  G  D  V  Y  S  Q  R  Y  N  P  T  F  Q  N  G  I  G  F  D  N  G  N  G  L  W  S  S  E  Q  G  F  A  I  G  G  Q  E  K  L  S  R  S  N  G  Y  L  S  E  L  A  A  A  A  F  V  C  R  :  G  G  V  Q  R  V  H  L  L  D  G  T  I  G  G  V  L  L  K  E  L  F  Q  R  D  G  V  G  T  M  V  A   </second_frame>
            <third_frame>   S  Q  T  Y  T  W  R  V  V  G  Y  R  Y  K  F  F  Q  L  H  L  P  P  T  P  P  H  S  P  G  S  C  H  S  P  L  P  S  K  S  P  L  Q  Y  R  S  S  A  C  I  C  L  L  K  P  E  R  P  W  L  L  F  V  A  T  V  F  G  L  L  K  L  E  I  V  F  S  G  E  *  L  V  L  I  R  *  S  F  Y  L  F  N  L  V  V  V  R  D  C  G  V  G  H  *  S  A  G  F  W  A  K  R  T  M  W  D  L  K  *  V  V  P  *  K  T  T  Y  L  L  V  F  S  E  K  H  G  L  I  F  L  H  I  E  E  A  R  L  L  F  *  S  Q  L  K  L  L  I  A  L  I  W  I  I  F  S  W :   I  S  P  F  F  M  V  W  E  S  N  L  F  L  C  Q  E  L  M  F  R  L  T  G  F  *  L  K  G  :  E  V  R  P  S  M  *  A  A  T  E  L  Q  T  L  I  H  S  R  Q  L  W  I  H  P  E  E  F  V  L  *  *  R  Q  S  C  H  L  A  L  H  *  L  V  S  A  D  M  E  I  I  V  A  G  M  I  V  L  V  L  P  V  V  I  F  Y  Q  R  R :   K  E  E  L  S  K  E  L  I  I  L  Q  L  V  K  *  R  R  *  M  F  L  E  F  A  R  G  L  I  R  I  P  *  C  Y  *  A  I  L  V  I  P  A  L  E  K  Y  *  T  A   : T  H  T  K  L  Q  Q  L  V  P  *  L  *  E  Q  K  N  *  F  V  S  *  T  A  Q  F  L  M  S  R  A  V  *  F  V  S  *  L  F  K  M  L  I  C  W  S  A  D  E  L  S  K  V  R  L  L  L  I  M  *  K  L  L  V  R  R  T  S  I  V  *  V  T  M  V  P  M  D  R  S  L  P  K  M  A  M  F  I  A  K  D  I  I  R  H  F  R  M  A  L  V  L  T  M  E  M  G  F  G  L  V  N  K  V  L  P  L  E  D  K  R  N  *  A  D  Q  M  V  I  S  Q  N  *  L  L  L  L  L  F  A  E :   E  V  F  K  E  C  T  C  W  M  A  L  L  V  E  F  Y  *  R  N  C  S  K  E  M  E  L  G  Q  W  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030E13.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49588" stop="49259"/>
                    <exon start="49154" stop="49067"/>
                    <exon start="48519" stop="48314"/>
                    <exon start="48144" stop="47993"/>
                    <exon start="47152" stop="46732"/>
                    <exon start="46223" stop="46128"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1293</number_coding_nucleotides>
                  <number_encoded_amino_acids>431</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATMAAFCGNSIWTPQARNCFQRGITCSNSLKFLPFQFSCCKRLWGRSLKCRVLGETDDVGFEVSSAIKDDLFVGFFREAWPYFLAHRGSTFVVLISAEIVDSPHLDHLLMDISLLHGLGIKFVLVPGTHVQIDRLLTERGSEAKYVGRYRITDPDSLEAAMDTSGRIRLMIEAKLSPGPSLTGVRRHGDNSRWHDSVGVASGNFLSAKKRGVVEGIDYSSTGEVKKIDVSRIRERLDQDSIVLLSNLGYSSSGEVLNCNTYEVATACALALGAEKLICIIDGPILDESSRLIRFLTLQDADMLVRRRAEQSETAANYVKAVSQEDFNRLGYHGSNGSLPSQNGDVYSQRYNPTFQNGIGFDNGNGLWSSEQGFAIGGQEKLSRSNGYLSELAAAAFVCRGGVQRVHLLDGTIGGVLLKELFQRDGVGTMVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="49409" PGL_stop="49791"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49409" e_stop="49791"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="49409" e_stop="49791" e_length="383"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49409" stop="49791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281191" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCCACATCGTCCGTTTCGCCCAAAACCCTGCACTTCAATGACCTACCCCACAATCTCTTACAACAACTAAATTGAAAAGGTAAAAACTTTAACGAATTAGAACAAGTTATTCCCCGCTGAAAACAATTTCGAGCTTGAGGAGTCCAAATACTGTTGCCACAAAAAGCAGCCATGGTCGCTCAGGTTTGAGCAAGCAAATGCACGCCGAACTCCGATACTGTAGTGGGCTTTTTGACGGCAGCGGGCTATGGCAGCTGCCTGGTGAATGGGGTGGCGTTGGGGGTAGGTGGAGTTGGAAGAATTTATACCGGTAACCAACGACTCGCCACGTATATGTTTGACTGGTGCATATGTTCAATAATAACTTTGGCCGTCAGTCGGC</gDNA_template>
            <first_frame> S  H  I  V  R  F  A  Q  N  P  A  L  Q  *  P  T  P  Q  S  L  T  T  T  K  L  K  R  *  K  L  *  R  I  R  T  S  Y  S  P  L  K  T  I  S  S  L  R  S  P  N  T  V  A  T  K  S  S  H  G  R  S  G  L  S  K  Q  M  H  A  E  L  R  Y  C  S  G  L  F  D  G  S  G  L  W  Q  L  P  G  E  W  G  G  V  G  G  R  W  S  W  K  N  L  Y  R  *  P  T  T  R  H  V  Y  V  *  L  V  H  M  F  N  N  N  F  G  R  Q  S   </first_frame>
            <second_frame>  P  T  S  S  V  S  P  K  T  L  H  F  N  D  L  P  H  N  L  L  Q  Q  L  N  *  K  G  K  N  F  N  E  L  E  Q  V  I  P  R  *  K  Q  F  R  A  *  G  V  Q  I  L  L  P  Q  K  A  A  M  V  A  Q  V  *  A  S  K  C  T  P  N  S  D  T  V  V  G  F  L  T  A  A  G  Y  G  S  C  L  V  N  G  V  A  L  G  V  G  G  V  G  R  I  Y  T  G  N  Q  R  L  A  T  Y  M  F  D  W  C  I  C  S  I  I  T  L  A  V  S  R  </second_frame>
            <third_frame>   P  H  R  P  F  R  P  K  P  C  T  S  M  T  Y  P  T  I  S  Y  N  N  *  I  E  K  V  K  T  L  T  N  *  N  K  L  F  P  A  E  N  N  F  E  L  E  E  S  K  Y  C  C  H  K  K  Q  P  W  S  L  R  F  E  Q  A  N  A  R  R  T  P  I  L  *  W  A  F  *  R  Q  R  A  M  A  A  A  W  *  M  G  W  R  W  G  *  V  E  L  E  E  F  I  P  V  T  N  D  S  P  R  I  C  L  T  G  A  Y  V  Q  *  *  L  W  P  S  V  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030E13.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49502" stop="49723"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIRTSYSPLKTISSLRSPNTVATKSSHGRSGLSKQMHAELRYCSGLFDGSGLWQLPGEWGGVGGRWSWKNLYR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030E13.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49599" stop="49790"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASKCTPNSDTVVGFLTAAGYGSCLVNGVALGVGGVGRIYTGNQRLATYMFDWCICSIITLAVSR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="51470" PGL_stop="52184"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51470" e_stop="52184"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="51470" e_stop="52184" e_length="715"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51470" stop="52184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51470" stop="52052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51470" stop="52016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458612" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51470" stop="51869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51477" stop="52184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51482" stop="52052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51482" stop="51969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588913" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGATACTCTAGATCTTCTACTGTGGTAATGGAGATTCAACACTCCAATTTTGCTATGCTTATTGCCTTCCTTCTCTTTGTAGCCATAGCTCTGAAGCTATGGAAAAAATCCAAAATTCAGTATAAACTCCCTCCAGGTCCTAGAAAACTACCATTTATTGGGAATTTGCATCAATTATCTAGCTCATTGCCTCACCATACTTTTAAGAATTTGTCAAACAAATATGGTCCCATGATGCACCTACAACTTGGTGAAGTTTCAGCTGTTATAGTATCATCACCACAAGTGGCAAAAGAGGTACTGAAGACTCATGACTTAATCTTTGCTAATAGGCCACAACTTCTTTCTGTACAGATTCTAAGCAACAACAGTCCTACCCTTTCATTCTCTCCTTATGGGGCTAATTGGAGACAGCTTAGAAAAGTATGTGTCTTGGAGCTTTTAAGTGCAAAGCGGGTTCAATCATTTGAGTCAATAAGGGAAGAGGAAGTTGATAATCTTATTGAAGCAATTTCATTGATACAGCCACAAGTTCCTATTGATATTAGTGAAATGATATTCTCGATGACGAATAACATAACTGCCAGGGCAGCCTTTGGTAAGAAATGCAAACACAAAGATGAGTTTATTAAAGCTATGAAAACAATTACAGAGCTATCAGGAGGTTTTGATATACCAGATTTATTTCCTTCCTTGAAAATTTTCCACTCATTA</gDNA_template>
            <first_frame> L  I  L  *  I  F  Y  C  G  N  G  D  S  T  L  Q  F  C  Y  A  Y  C  L  P  S  L  C  S  H  S  S  E  A  M  E  K  I  Q  N  S  V  *  T  P  S  R  S  *  K  T  T  I  Y  W  E  F  A  S  I  I  *  L  I  A  S  P  Y  F  *  E  F  V  K  Q  I  W  S  H  D  A  P  T  T  W  *  S  F  S  C  Y  S  I  I  T  T  S  G  K  R  G  T  E  D  S  *  L  N  L  C  *  *  A  T  T  S  F  C  T  D  S  K  Q  Q  Q  S  Y  P  F  I  L  S  L  W  G  *  L  E  T  A  *  K  S  M  C  L  G  A  F  K  C  K  A  G  S  I  I  *  V  N  K  G  R  G  S  *  *  S  Y  *  S  N  F  I  D  T  A  T  S  S  Y  *  Y  *  *  N  D  I  L  D  D  E  *  H  N  C  Q  G  S  L  W  *  E  M  Q  T  Q  R  *  V  Y  *  S  Y  E  N  N  Y  R  A  I  R  R  F  *  Y  T  R  F  I  S  F  L  E  N  F  P  L  I  </first_frame>
            <second_frame>  *  Y  S  R  S  S  T  V  V  M  E  I  Q  H  S  N  F  A  M  L  I  A  F  L  L  F  V  A  I  A  L  K  L  W  K  K  S  K  I  Q  Y  K  L  P  P  G  P  R  K  L  P  F  I  G  N  L  H  Q  L  S  S  S  L  P  H  H  T  F  K  N  L  S  N  K  Y  G  P  M  M  H  L  Q  L  G  E  V  S  A  V  I  V  S  S  P  Q  V  A  K  E  V  L  K  T  H  D  L  I  F  A  N  R  P  Q  L  L  S  V  Q  I  L  S  N  N  S  P  T  L  S  F  S  P  Y  G  A  N  W  R  Q  L  R  K  V  C  V  L  E  L  L  S  A  K  R  V  Q  S  F  E  S  I  R  E  E  E  V  D  N  L  I  E  A  I  S  L  I  Q  P  Q  V  P  I  D  I  S  E  M  I  F  S  M  T  N  N  I  T  A  R  A  A  F  G  K  K  C  K  H  K  D  E  F  I  K  A  M  K  T  I  T  E  L  S  G  G  F  D  I  P  D  L  F  P  S  L  K  I  F  H  S  L </second_frame>
            <third_frame>   D  T  L  D  L  L  L  W  *  W  R  F  N  T  P  I  L  L  C  L  L  P  S  F  S  L  *  P  *  L  *  S  Y  G  K  N  P  K  F  S  I  N  S  L  Q  V  L  E  N  Y  H  L  L  G  I  C  I  N  Y  L  A  H  C  L  T  I  L  L  R  I  C  Q  T  N  M  V  P  *  C  T  Y  N  L  V  K  F  Q  L  L  *  Y  H  H  H  K  W  Q  K  R  Y  *  R  L  M  T  *  S  L  L  I  G  H  N  F  F  L  Y  R  F  *  A  T  T  V  L  P  F  H  S  L  L  M  G  L  I  G  D  S  L  E  K  Y  V  S  W  S  F  *  V  Q  S  G  F  N  H  L  S  Q  *  G  K  R  K  L  I  I  L  L  K  Q  F  H  *  Y  S  H  K  F  L  L  I  L  V  K  *  Y  S  R  *  R  I  T  *  L  P  G  Q  P  L  V  R  N  A  N  T  K  M  S  L  L  K  L  *  K  Q  L  Q  S  Y  Q  E  V  L  I  Y  Q  I  Y  F  L  P  *  K  F  S  T  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030E13.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51474" stop="52184"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSRSSTVVMEIQHSNFAMLIAFLLFVAIALKLWKKSKIQYKLPPGPRKLPFIGNLHQLSSSLPHHTFKNLSNKYGPMMHLQLGEVSAVIVSSPQVAKEVLKTHDLIFANRPQLLSVQILSNNSPTLSFSPYGANWRQLRKVCVLELLSAKRVQSFESIREEEVDNLIEAISLIQPQVPIDISEMIFSMTNNITARAAFGKKCKHKDEFIKAMKTITELSGGFDIPDLFPSLKIFHSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="52317" PGL_stop="53533"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52317" e_stop="52391"/>
            <exon e_start="52730" e_stop="53533"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.981" e_score="0.987"/>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="52317" e_stop="52391" e_length="75"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.981">
            <gDNA_intron_boundary i_start="52392" i_stop="52729" i_length="338"/>
          </intron>
          <exon e_serial="2" e_score="0.932">
            <gDNA_exon_boundary e_start="52730" e_stop="53533" e_length="804"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52317" stop="52391"/>
              <exon start="52730" stop="53362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52317" stop="52391"/>
              <exon start="52730" stop="53183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52317" stop="52391"/>
              <exon start="52730" stop="53143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52968" stop="53533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52992" stop="53362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614135" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTCTACTTAGGGTTCAAGAAAGTGGTGATTTAGAAATCCCCATATCAAGAAACACTCTCAAATCTGTCATTTTG : GAAATGTTCATAGGGGGAACAGACACATCATCGACAGTTTTAGAGTGGGCTATTTCTGAAATGATGAAGAATCCACAAGTGATGGAAAAAGCACAAGCTGAGGTGAGAGAGGTTTTCAAAGGGAAAAGTAAAATTACAGAATCGGAAATTCAAAAGTTAGATTATATAAAAATGGTTATCAAAGAGACACTACGAATGCATCCACCATTACCGTTGTTACTACCAAGAGAAGCTATAGAAAAATGTGAAATTGGTGGCTATGACATACCTGCAAAAACCAAAGTCATCATCAATGCATGGGCAATAGGTAGACATCCACAACACTGGGAAAATGCTGAATGCTTTGAACCAGAAAGATTCCAAGATTTAGACTTGGATTTCGTAGGGACTAATCTTGAGTACATACCATTTGGAGGTGGCAGAAGGATGTGTCCAGGGTCATTATTTGGAATTGCAAATGTTGAACTTCCACTTGCCAAATTACTATTTCATTTCGACTGGGAACTCCCTGATGGAATTGAAGCAAGTGACCTTGACATGACAGAGACTTTTGGTGCAACCGTTGGAAGGAAGAATGATTTGTACTTGGTTGCAAAACCTCATATTTCCAAATCCTAATGCACATGAAATAAGGTTTCTTCTATTCTTTTTTCTCTGTTATTCACTTTAGCAAAATGAAAGCAGCCCACCCAAGTGTCCACATTTCTTAATATGCCCAAACAGAAGAAAAATCTCTTGTCTAGTCTCTGCCTACTGTATGTGCTAAATCAAACTATAATAAGTTGTCTACAGGAAAAATATTGT</gDNA_template>
            <first_frame> V  L  L  R  V  Q  E  S  G  D  L  E  I  P  I  S  R  N  T  L  K  S  V  I  L  :  E  M  F  I  G  G  T  D  T  S  S  T  V  L  E  W  A  I  S  E  M  M  K  N  P  Q  V  M  E  K  A  Q  A  E  V  R  E  V  F  K  G  K  S  K  I  T  E  S  E  I  Q  K  L  D  Y  I  K  M  V  I  K  E  T  L  R  M  H  P  P  L  P  L  L  L  P  R  E  A  I  E  K  C  E  I  G  G  Y  D  I  P  A  K  T  K  V  I  I  N  A  W  A  I  G  R  H  P  Q  H  W  E  N  A  E  C  F  E  P  E  R  F  Q  D  L  D  L  D  F  V  G  T  N  L  E  Y  I  P  F  G  G  G  R  R  M  C  P  G  S  L  F  G  I  A  N  V  E  L  P  L  A  K  L  L  F  H  F  D  W  E  L  P  D  G  I  E  A  S  D  L  D  M  T  E  T  F  G  A  T  V  G  R  K  N  D  L  Y  L  V  A  K  P  H  I  S  K  S  *  C  T  *  N  K  V  S  S  I  L  F  S  L  L  F  T  L  A  K  *  K  Q  P  T  Q  V  S  T  F  L  N  M  P  K  Q  K  K  N  L  L  S  S  L  C  L  L  Y  V  L  N  Q  T  I  I  S  C  L  Q  E  K  Y  C </first_frame>
            <second_frame>  F  Y  L  G  F  K  K  V  V  I  *  K  S  P  Y  Q  E  T  L  S  N  L  S  F  W :   K  C  S  *  G  E  Q  T  H  H  R  Q  F  *  S  G  L  F  L  K  *  *  R  I  H  K  *  W  K  K  H  K  L  R  *  E  R  F  S  K  G  K  V  K  L  Q  N  R  K  F  K  S  *  I  I  *  K  W  L  S  K  R  H  Y  E  C  I  H  H  Y  R  C  Y  Y  Q  E  K  L  *  K  N  V  K  L  V  A  M  T  Y  L  Q  K  P  K  S  S  S  M  H  G  Q  *  V  D  I  H  N  T  G  K  M  L  N  A  L  N  Q  K  D  S  K  I  *  T  W  I  S  *  G  L  I  L  S  T  Y  H  L  E  V  A  E  G  C  V  Q  G  H  Y  L  E  L  Q  M  L  N  F  H  L  P  N  Y  Y  F  I  S  T  G  N  S  L  M  E  L  K  Q  V  T  L  T  *  Q  R  L  L  V  Q  P  L  E  G  R  M  I  C  T  W  L  Q  N  L  I  F  P  N  P  N  A  H  E  I  R  F  L  L  F  F  F  L  C  Y  S  L  *  Q  N  E  S  S  P  P  K  C  P  H  F  L  I  C  P  N  R  R  K  I  S  C  L  V  S  A  Y  C  M  C  *  I  K  L  *  *  V  V  Y  R  K  N  I   </second_frame>
            <third_frame>   S  T  *  G  S  R  K  W  *  F  R  N  P  H  I  K  K  H  S  Q  I  C  H  F   : G  N  V  H  R  G  N  R  H  I  I  D  S  F  R  V  G  Y  F  *  N  D  E  E  S  T  S  D  G  K  S  T  S  *  G  E  R  G  F  Q  R  E  K  *  N  Y  R  I  G  N  S  K  V  R  L  Y  K  N  G  Y  Q  R  D  T  T  N  A  S  T  I  T  V  V  T  T  K  R  S  Y  R  K  M  *  N  W  W  L  *  H  T  C  K  N  Q  S  H  H  Q  C  M  G  N  R  *  T  S  T  T  L  G  K  C  *  M  L  *  T  R  K  I  P  R  F  R  L  G  F  R  R  D  *  S  *  V  H  T  I  W  R  W  Q  K  D  V  S  R  V  I  I  W  N  C  K  C  *  T  S  T  C  Q  I  T  I  S  F  R  L  G  T  P  *  W  N  *  S  K  *  P  *  H  D  R  D  F  W  C  N  R  W  K  E  E  *  F  V  L  G  C  K  T  S  Y  F  Q  I  L  M  H  M  K  *  G  F  F  Y  S  F  F  S  V  I  H  F  S  K  M  K  A  A  H  P  S  V  H  I  S  *  Y  A  Q  T  E  E  K  S  L  V  *  S  L  P  T  V  C  A  K  S  N  Y  N  K  L  S  T  G  K  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030E13.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52317" stop="52391"/>
                    <exon start="52730" stop="53347"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLRVQESGDLEIPISRNTLKSVILEMFIGGTDTSSTVLEWAISEMMKNPQVMEKAQAEVREVFKGKSKITESEIQKLDYIKMVIKETLRMHPPLPLLLPREAIEKCEIGGYDIPAKTKVIINAWAIGRHPQHWENAECFEPERFQDLDLDFVGTNLEYIPFGGGRRMCPGSLFGIANVELPLAKLLFHFDWELPDGIEASDLDMTETFGATVGRKNDLYLVAKPHISKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="52385" e_stop="52927"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52385" e_stop="52927" e_length="543"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52385" stop="52927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203778" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTTTGGTATGTTCTTTCAACCTTATAAAATCCCCTTTTCTAAAACAAGCCGTGTTTTAGTTGTTTGCAAGTAACACTTTTTGGAACATCATATTATGTTTGTGTCAACTCAATCACACAGAAAAATATCTGCTAACTAGAAGGAAATTATACATGAGGACTTTACTATAAAATTGAATGCTTGATATGTCAAAATTATTATATTGATGTATCTATATGTTGCCTACTTATCATGGAGCATAGAGAAGATGTTTTTATCATATTGCCTAATACTACTGAGTGACTAACTTTATCAGCTCAATTCTTGTGAACTAAAAGTTTGTCATATGGCTGTACACATTCAGGAAATGTTCATAGGGGGAACAGACACATCATCGACAGTTTTAGAGTGGGCTATTTCTGAAATGATGAAGAATCCACAAGTGATGGAAAAAGCACAAGCTGAGGTGAGAGAGGTTTTCAAAGGGAAAAGTAAAATTACAGAATCGGAAATTCAAAAGTTAGATTATATAAAAATGGTTATCAAAGAGACACTACGAATG</gDNA_template>
            <first_frame> H  F  G  M  F  F  Q  P  Y  K  I  P  F  S  K  T  S  R  V  L  V  V  C  K  *  H  F  L  E  H  H  I  M  F  V  S  T  Q  S  H  R  K  I  S  A  N  *  K  E  I  I  H  E  D  F  T  I  K  L  N  A  *  Y  V  K  I  I  I  L  M  Y  L  Y  V  A  Y  L  S  W  S  I  E  K  M  F  L  S  Y  C  L  I  L  L  S  D  *  L  Y  Q  L  N  S  C  E  L  K  V  C  H  M  A  V  H  I  Q  E  M  F  I  G  G  T  D  T  S  S  T  V  L  E  W  A  I  S  E  M  M  K  N  P  Q  V  M  E  K  A  Q  A  E  V  R  E  V  F  K  G  K  S  K  I  T  E  S  E  I  Q  K  L  D  Y  I  K  M  V  I  K  E  T  L  R  M </first_frame>
            <second_frame>  I  L  V  C  S  F  N  L  I  K  S  P  F  L  K  Q  A  V  F  *  L  F  A  S  N  T  F  W  N  I  I  L  C  L  C  Q  L  N  H  T  E  K  Y  L  L  T  R  R  K  L  Y  M  R  T  L  L  *  N  *  M  L  D  M  S  K  L  L  Y  *  C  I  Y  M  L  P  T  Y  H  G  A  *  R  R  C  F  Y  H  I  A  *  Y  Y  *  V  T  N  F  I  S  S  I  L  V  N  *  K  F  V  I  W  L  Y  T  F  R  K  C  S  *  G  E  Q  T  H  H  R  Q  F  *  S  G  L  F  L  K  *  *  R  I  H  K  *  W  K  K  H  K  L  R  *  E  R  F  S  K  G  K  V  K  L  Q  N  R  K  F  K  S  *  I  I  *  K  W  L  S  K  R  H  Y  E   </second_frame>
            <third_frame>   F  W  Y  V  L  S  T  L  *  N  P  L  F  *  N  K  P  C  F  S  C  L  Q  V  T  L  F  G  T  S  Y  Y  V  C  V  N  S  I  T  Q  K  N  I  C  *  L  E  G  N  Y  T  *  G  L  Y  Y  K  I  E  C  L  I  C  Q  N  Y  Y  I  D  V  S  I  C  C  L  L  I  M  E  H  R  E  D  V  F  I  I  L  P  N  T  T  E  *  L  T  L  S  A  Q  F  L  *  T  K  S  L  S  Y  G  C  T  H  S  G  N  V  H  R  G  N  R  H  I  I  D  S  F  R  V  G  Y  F  *  N  D  E  E  S  T  S  D  G  K  S  T  S  *  G  E  R  G  F  Q  R  E  K  *  N  Y  R  I  G  N  S  K  V  R  L  Y  K  N  G  Y  Q  R  D  T  T  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030E13.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52673" stop="52927"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYQLNSCELKVCHMAVHIQEMFIGGTDTSSTVLEWAISEMMKNPQVMEKAQAEVREVFKGKSKITESEIQKLDYIKMVIKETLRM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="58031" PGL_stop="54913"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58031" e_stop="57829"/>
            <exon e_start="57680" e_stop="57381"/>
            <exon e_start="57305" e_stop="57154"/>
            <exon e_start="55250" e_stop="54913"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.590" acc_prob="0.731" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="0.993"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58031" e_stop="57829" e_length="203"/>
          </exon>
          <intron i_serial="1" don_prob="0.590" acc_prob="0.731">
            <gDNA_intron_boundary i_start="57828" i_stop="57681" i_length="148"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57680" e_stop="57381" e_length="300"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="57380" i_stop="57306" i_length="75"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="57305" e_stop="57154" e_length="152"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="57153" i_stop="55251" i_length="1903"/>
          </intron>
          <exon e_serial="4" e_score="0.970">
            <gDNA_exon_boundary e_start="55250" e_stop="54913" e_length="338"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58031" stop="57829"/>
              <exon start="57680" stop="57381"/>
              <exon start="57305" stop="57154"/>
              <exon start="55250" stop="55164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58022" stop="57829"/>
              <exon start="57680" stop="57381"/>
              <exon start="57305" stop="57255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58016" stop="57829"/>
              <exon start="57680" stop="57381"/>
              <exon start="57305" stop="57154"/>
              <exon start="55250" stop="55157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E622206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57656" stop="57381"/>
              <exon start="57305" stop="57154"/>
              <exon start="55250" stop="55236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57184" stop="57154"/>
              <exon start="55250" stop="54913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216436" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCCCTTTAGTTTCATTTACCACCAAATTTACTTCATTTTCTGCCACGCTTCCTTACATCATTATTTTCCCCCTGTTACTACTTCTTCTTCTTCCTTCTCTTTAGCTCATATAAACTCCAAAAAATTTACACAACTGAAAACCGTGCGTAGTTTTTCTTCCTTTATTGGTGATTGAATTTTTTGTGTGGATTCTTCTGCATCG : TTTGCGCTCTGCATTATTAATCGATCGACCGGCCGGTGTTTGAGTTTAAGATGGGGAATTGCCAAGCGGCAGAGGCAGCAACTGTAGTGATTCAACATCCAGGCAATAAAATTGAGAGGATTTACTGGTCTATAAGTGCACATGAAGTCATGAGTTCGAATCCTGGCCACTACGTCGCCCTTGTTATCACTTCTCCAACGGGGAGAACACACAACGGTTCGCCCGTCAGGCAGCTTAAGCTTCTCCGCCCCGGAGATACTTTGCTTCTTGGACAAGTTTATCGACTCATCTGCTTCGAAG : ATGTACTAAAAGAGTTTGCTGCAAAGAAGTGCGTGAAACTTGGCAAGTTGCTCAGGGAAAGTGGAGGCCTTGTTCTCGATTCAAAGAAAATCTCCGTCGATTCTTCAGCAGTGAAAAACAAGCCCAAAATGGTGAATGGAATCCCAGCTAAG : ATGGAACATGAAACTTATCAAAATGGAAGCAGTAGCAGCAGTGGGCAAAGAAGTGTGGGAAGGCATCATGGTGGTGTGGGGCAATGGAAACCAGCCTTACAGAGTATTGCAGAGATTGGAACTTGAACTATACCCACCATTAAGCATTACACTTTCCCTACCATGGCTAAACCTTTTCCAAAATAAGAAAGGATAGCAACTCAATTGTCCCTAGCTAATAGTAATTAGTTTAGAAAAGTACCACTTAATTACTACAATGTTTGACGAATTCCCTCTGAAGAATGCATCTACTTAGTAGCTGCTTATTTTCAAGTTCCACGTAATTAAAATATTACCTG</gDNA_template>
            <first_frame> L  P  L  V  S  F  T  T  K  F  T  S  F  S  A  T  L  P  Y  I  I  I  F  P  L  L  L  L  L  L  L  P  S  L  *  L  I  *  T  P  K  N  L  H  N  *  K  P  C  V  V  F  L  P  L  L  V  I  E  F  F  V  W  I  L  L  H  R :   L  R  S  A  L  L  I  D  R  P  A  G  V  *  V  *  D  G  E  L  P  S  G  R  G  S  N  C  S  D  S  T  S  R  Q  *  N  *  E  D  L  L  V  Y  K  C  T  *  S  H  E  F  E  S  W  P  L  R  R  P  C  Y  H  F  S  N  G  E  N  T  Q  R  F  A  R  Q  A  A  *  A  S  P  P  R  R  Y  F  A  S  W  T  S  L  S  T  H  L  L  R  R :   C  T  K  R  V  C  C  K  E  V  R  E  T  W  Q  V  A  Q  G  K  W  R  P  C  S  R  F  K  E  N  L  R  R  F  F  S  S  E  K  Q  A  Q  N  G  E  W  N  P  S  *   : D  G  T  *  N  L  S  K  W  K  Q  *  Q  Q  W  A  K  K  C  G  K  A  S  W  W  C  G  A  M  E  T  S  L  T  E  Y  C  R  D  W  N  L  N  Y  T  H  H  *  A  L  H  F  P  Y  H  G  *  T  F  S  K  I  R  K  D  S  N  S  I  V  P  S  *  *  *  L  V  *  K  S  T  T  *  L  L  Q  C  L  T  N  S  L  *  R  M  H  L  L  S  S  C  L  F  S  S  S  T  *  L  K  Y  Y  L </first_frame>
            <second_frame>  S  L  *  F  H  L  P  P  N  L  L  H  F  L  P  R  F  L  T  S  L  F  S  P  C  Y  Y  F  F  F  F  L  L  F  S  S  Y  K  L  Q  K  I  Y  T  T  E  N  R  A  *  F  F  F  L  Y  W  *  L  N  F  L  C  G  F  F  C  I   : V  C  A  L  H  Y  *  S  I  D  R  P  V  F  E  F  K  M  G  N  C  Q  A  A  E  A  A  T  V  V  I  Q  H  P  G  N  K  I  E  R  I  Y  W  S  I  S  A  H  E  V  M  S  S  N  P  G  H  Y  V  A  L  V  I  T  S  P  T  G  R  T  H  N  G  S  P  V  R  Q  L  K  L  L  R  P  G  D  T  L  L  L  G  Q  V  Y  R  L  I  C  F  E   : D  V  L  K  E  F  A  A  K  K  C  V  K  L  G  K  L  L  R  E  S  G  G  L  V  L  D  S  K  K  I  S  V  D  S  S  A  V  K  N  K  P  K  M  V  N  G  I  P  A  K  :  M  E  H  E  T  Y  Q  N  G  S  S  S  S  S  G  Q  R  S  V  G  R  H  H  G  G  V  G  Q  W  K  P  A  L  Q  S  I  A  E  I  G  T  *  T  I  P  T  I  K  H  Y  T  F  P  T  M  A  K  P  F  P  K  *  E  R  I  A  T  Q  L  S  L  A  N  S  N  *  F  R  K  V  P  L  N  Y  Y  N  V  *  R  I  P  S  E  E  C  I  Y  L  V  A  A  Y  F  Q  V  P  R  N  *  N  I  T   </second_frame>
            <third_frame>   P  F  S  F  I  Y  H  Q  I  Y  F  I  F  C  H  A  S  L  H  H  Y  F  P  P  V  T  T  S  S  S  S  F  S  L  A  H  I  N  S  K  K  F  T  Q  L  K  T  V  R  S  F  S  S  F  I  G  D  *  I  F  C  V  D  S  S  A  S  :  F  A  L  C  I  I  N  R  S  T  G  R  C  L  S  L  R  W  G  I  A  K  R  Q  R  Q  Q  L  *  *  F  N  I  Q  A  I  K  L  R  G  F  T  G  L  *  V  H  M  K  S  *  V  R  I  L  A  T  T  S  P  L  L  S  L  L  Q  R  G  E  H  T  T  V  R  P  S  G  S  L  S  F  S  A  P  E  I  L  C  F  L  D  K  F  I  D  S  S  A  S  K  :  M  Y  *  K  S  L  L  Q  R  S  A  *  N  L  A  S  C  S  G  K  V  E  A  L  F  S  I  Q  R  K  S  P  S  I  L  Q  Q  *  K  T  S  P  K  W  *  M  E  S  Q  L  R :   W  N  M  K  L  I  K  M  E  A  V  A  A  V  G  K  E  V  W  E  G  I  M  V  V  W  G  N  G  N  Q  P  Y  R  V  L  Q  R  L  E  L  E  L  Y  P  P  L  S  I  T  L  S  L  P  W  L  N  L  F  Q  N  K  K  G  *  Q  L  N  C  P  *  L  I  V  I  S  L  E  K  Y  H  L  I  T  T  M  F  D  E  F  P  L  K  N  A  S  T  *  *  L  L  I  F  K  F  H  V  I  K  I  L  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030E13.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57660" stop="57381"/>
                    <exon start="57305" stop="57154"/>
                    <exon start="55250" stop="55125"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIDRPVFEFKMGNCQAAEAATVVIQHPGNKIERIYWSISAHEVMSSNPGHYVALVITSPTGRTHNGSPVRQLKLLRPGDTLLLGQVYRLICFEDVLKEFAAKKCVKLGKLLRESGGLVLDSKKISVDSSAVKNKPKMVNGIPAKMEHETYQNGSSSSSGQRSVGRHHGGVGQWKPALQSIAEIGT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="57810" e_stop="57381"/>
            <exon e_start="57305" e_stop="57154"/>
            <exon e_start="55250" e_stop="54913"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.998"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="57810" e_stop="57381" e_length="430"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="57380" i_stop="57306" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57305" e_stop="57154" e_length="152"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="57153" i_stop="55251" i_length="1903"/>
          </intron>
          <exon e_serial="3" e_score="0.970">
            <gDNA_exon_boundary e_start="55250" e_stop="54913" e_length="338"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57810" stop="57381"/>
              <exon start="57305" stop="57154"/>
              <exon start="55250" stop="55102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57656" stop="57381"/>
              <exon start="57305" stop="57154"/>
              <exon start="55250" stop="55236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57184" stop="57154"/>
              <exon start="55250" stop="54913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216436" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGTTCTCTCTGTTTTCATTCCTTTATTATTACTTGACAAGTCAGTTTTGGAGTAATCAATCATCTTCTTCTATTCATCTTTAACTTAACGCAGAAAATTAAAATTAAAATTTGTGCATTTTGATATAGTTTGCGCTCTGCATTATTAATCGATCGACCGGCCGGTGTTTGAGTTTAAGATGGGGAATTGCCAAGCGGCAGAGGCAGCAACTGTAGTGATTCAACATCCAGGCAATAAAATTGAGAGGATTTACTGGTCTATAAGTGCACATGAAGTCATGAGTTCGAATCCTGGCCACTACGTCGCCCTTGTTATCACTTCTCCAACGGGGAGAACACACAACGGTTCGCCCGTCAGGCAGCTTAAGCTTCTCCGCCCCGGAGATACTTTGCTTCTTGGACAAGTTTATCGACTCATCTGCTTCGAAG : ATGTACTAAAAGAGTTTGCTGCAAAGAAGTGCGTGAAACTTGGCAAGTTGCTCAGGGAAAGTGGAGGCCTTGTTCTCGATTCAAAGAAAATCTCCGTCGATTCTTCAGCAGTGAAAAACAAGCCCAAAATGGTGAATGGAATCCCAGCTAAG : ATGGAACATGAAACTTATCAAAATGGAAGCAGTAGCAGCAGTGGGCAAAGAAGTGTGGGAAGGCATCATGGTGGTGTGGGGCAATGGAAACCAGCCTTACAGAGTATTGCAGAGATTGGAACTTGAACTATACCCACCATTAAGCATTACACTTTCCCTACCATGGCTAAACCTTTTCCAAAATAAGAAAGGATAGCAACTCAATTGTCCCTAGCTAATAGTAATTAGTTTAGAAAAGTACCACTTAATTACTACAATGTTTGACGAATTCCCTCTGAAGAATGCATCTACTTAGTAGCTGCTTATTTTCAAGTTCCACGTAATTAAAATATTACCTG</gDNA_template>
            <first_frame> R  V  L  S  V  F  I  P  L  L  L  L  D  K  S  V  L  E  *  S  I  I  F  F  Y  S  S  L  T  *  R  R  K  L  K  L  K  F  V  H  F  D  I  V  C  A  L  H  Y  *  S  I  D  R  P  V  F  E  F  K  M  G  N  C  Q  A  A  E  A  A  T  V  V  I  Q  H  P  G  N  K  I  E  R  I  Y  W  S  I  S  A  H  E  V  M  S  S  N  P  G  H  Y  V  A  L  V  I  T  S  P  T  G  R  T  H  N  G  S  P  V  R  Q  L  K  L  L  R  P  G  D  T  L  L  L  G  Q  V  Y  R  L  I  C  F  E   : D  V  L  K  E  F  A  A  K  K  C  V  K  L  G  K  L  L  R  E  S  G  G  L  V  L  D  S  K  K  I  S  V  D  S  S  A  V  K  N  K  P  K  M  V  N  G  I  P  A  K  :  M  E  H  E  T  Y  Q  N  G  S  S  S  S  S  G  Q  R  S  V  G  R  H  H  G  G  V  G  Q  W  K  P  A  L  Q  S  I  A  E  I  G  T  *  T  I  P  T  I  K  H  Y  T  F  P  T  M  A  K  P  F  P  K  *  E  R  I  A  T  Q  L  S  L  A  N  S  N  *  F  R  K  V  P  L  N  Y  Y  N  V  *  R  I  P  S  E  E  C  I  Y  L  V  A  A  Y  F  Q  V  P  R  N  *  N  I  T   </first_frame>
            <second_frame>  E  F  S  L  F  S  F  L  Y  Y  Y  L  T  S  Q  F  W  S  N  Q  S  S  S  S  I  H  L  *  L  N  A  E  N  *  N  *  N  L  C  I  L  I  *  F  A  L  C  I  I  N  R  S  T  G  R  C  L  S  L  R  W  G  I  A  K  R  Q  R  Q  Q  L  *  *  F  N  I  Q  A  I  K  L  R  G  F  T  G  L  *  V  H  M  K  S  *  V  R  I  L  A  T  T  S  P  L  L  S  L  L  Q  R  G  E  H  T  T  V  R  P  S  G  S  L  S  F  S  A  P  E  I  L  C  F  L  D  K  F  I  D  S  S  A  S  K  :  M  Y  *  K  S  L  L  Q  R  S  A  *  N  L  A  S  C  S  G  K  V  E  A  L  F  S  I  Q  R  K  S  P  S  I  L  Q  Q  *  K  T  S  P  K  W  *  M  E  S  Q  L  R :   W  N  M  K  L  I  K  M  E  A  V  A  A  V  G  K  E  V  W  E  G  I  M  V  V  W  G  N  G  N  Q  P  Y  R  V  L  Q  R  L  E  L  E  L  Y  P  P  L  S  I  T  L  S  L  P  W  L  N  L  F  Q  N  K  K  G  *  Q  L  N  C  P  *  L  I  V  I  S  L  E  K  Y  H  L  I  T  T  M  F  D  E  F  P  L  K  N  A  S  T  *  *  L  L  I  F  K  F  H  V  I  K  I  L  P  </second_frame>
            <third_frame>   S  S  L  C  F  H  S  F  I  I  T  *  Q  V  S  F  G  V  I  N  H  L  L  L  F  I  F  N  L  T  Q  K  I  K  I  K  I  C  A  F  *  Y  S  L  R  S  A  L  L  I  D  R  P  A  G  V  *  V  *  D  G  E  L  P  S  G  R  G  S  N  C  S  D  S  T  S  R  Q  *  N  *  E  D  L  L  V  Y  K  C  T  *  S  H  E  F  E  S  W  P  L  R  R  P  C  Y  H  F  S  N  G  E  N  T  Q  R  F  A  R  Q  A  A  *  A  S  P  P  R  R  Y  F  A  S  W  T  S  L  S  T  H  L  L  R  R :   C  T  K  R  V  C  C  K  E  V  R  E  T  W  Q  V  A  Q  G  K  W  R  P  C  S  R  F  K  E  N  L  R  R  F  F  S  S  E  K  Q  A  Q  N  G  E  W  N  P  S  *   : D  G  T  *  N  L  S  K  W  K  Q  *  Q  Q  W  A  K  K  C  G  K  A  S  W  W  C  G  A  M  E  T  S  L  T  E  Y  C  R  D  W  N  L  N  Y  T  H  H  *  A  L  H  F  P  Y  H  G  *  T  F  S  K  I  R  K  D  S  N  S  I  V  P  S  *  *  *  L  V  *  K  S  T  T  *  L  L  Q  C  L  T  N  S  L  *  R  M  H  L  L  S  S  C  L  F  S  S  S  T  *  L  K  Y  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030E13.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57660" stop="57381"/>
                    <exon start="57305" stop="57154"/>
                    <exon start="55250" stop="55125"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIDRPVFEFKMGNCQAAEAATVVIQHPGNKIERIYWSISAHEVMSSNPGHYVALVITSPTGRTHNGSPVRQLKLLRPGDTLLLGQVYRLICFEDVLKEFAAKKCVKLGKLLRESGGLVLDSKKISVDSSAVKNKPKMVNGIPAKMEHETYQNGSSSSSGQRSVGRHHGGVGQWKPALQSIAEIGT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="65611" PGL_stop="68104"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65611" e_stop="65844"/>
            <exon e_start="66554" e_stop="66851"/>
            <exon e_start="67674" e_stop="68104"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.774" e_score="0.983"/>
          <exon-intron don_prob="0.981" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="65611" e_stop="65844" e_length="234"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.774">
            <gDNA_intron_boundary i_start="65845" i_stop="66553" i_length="709"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66554" e_stop="66851" e_length="298"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.993">
            <gDNA_intron_boundary i_start="66852" i_stop="67673" i_length="822"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="67674" e_stop="68104" e_length="431"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65611" stop="65844"/>
              <exon start="66554" stop="66851"/>
              <exon start="67674" stop="67992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65683" stop="65844"/>
              <exon start="66554" stop="66851"/>
              <exon start="67674" stop="68104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698476" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAATTGACTGGTAATGGGTCAAGGGAGGATAATGAATTATTGTCTCCTTCCAAGGAAGGGAAAGGAAAGAGATTATGGAAGAAAGTGAAGTACCAGCTTGTGGAGTATCATTCATTGCCTGGGTATTTGAAAGACAACGAATACATTCTGGGTCATTACCGGGCCGAATGGCCATTGAAGCAAGCATTGCTCAGCATCTTCACAATTCACAATGAGACCCTCAATGTTTGGAC : GCATTTGATAGGGTTCTTCCTCTTCCTTGCGCTCACAATTTATACTGCAACCAAAGTTCCCAAGGTTGTAGATCTACATTCCTTACAGAATCTGCCTGATGTGCTAAGGAAGGCTGATTTGCACAAATTACAAGCAGAACTTTTAACTTGTCTTCCTTCTTTGCCGTATATGCCTGATTTGCACAAACTTCGAGATGGTTTGCTACGTTCACCCTCTAATTGGCATATTATTGACCTCCTGCACAACTGTCTGCCTGAGCGATTTTCCCACAGCAACCATACAGATGTTTGTGTACTG : CGGAGTGTAAAAGAAGATGTGGCAAATATATTAGCACCATTGCTGGTGAGACCAATAACTCGCTGGCCATTCTATGCCTTCCTTGGTGGGGCAATGTTTTGTTTGTTAGCAAGCAGCACATGTCATTTACTTTCTTGCCATTCAGAGCGTTTATCATACATCATGTTGAGGCTCGACTATGCTGGTATCGCTGCCCTGATATCAACTTCATTTTACCCTCCGGTCTATTATTCCTTCATGTGTTACCCCTTCTTTTGCAATCTGTACCTGGGATTTATTACCCTCCTGGGAATTGGCACAATCTTGGGTTCCCTACTTCCTGTGTTCCAGACTCCCGAATATCGAGTTATTCGAGCATCTCTATTCTTTGGAATGGGCCTGTCAGGTGCGGTACCTATTCTGCACAAGCTGGTTTTGTTTTGGCACCAACC</gDNA_template>
            <first_frame> E  I  D  W  *  W  V  K  G  G  *  *  I  I  V  S  F  Q  G  R  E  R  K  E  I  M  E  E  S  E  V  P  A  C  G  V  S  F  I  A  W  V  F  E  R  Q  R  I  H  S  G  S  L  P  G  R  M  A  I  E  A  S  I  A  Q  H  L  H  N  S  Q  *  D  P  Q  C  L  D  :  A  F  D  R  V  L  P  L  P  C  A  H  N  L  Y  C  N  Q  S  S  Q  G  C  R  S  T  F  L  T  E  S  A  *  C  A  K  E  G  *  F  A  Q  I  T  S  R  T  F  N  L  S  S  F  F  A  V  Y  A  *  F  A  Q  T  S  R  W  F  A  T  F  T  L  *  L  A  Y  Y  *  P  P  A  Q  L  S  A  *  A  I  F  P  Q  Q  P  Y  R  C  L  C  T   : A  E  C  K  R  R  C  G  K  Y  I  S  T  I  A  G  E  T  N  N  S  L  A  I  L  C  L  P  W  W  G  N  V  L  F  V  S  K  Q  H  M  S  F  T  F  L  P  F  R  A  F  I  I  H  H  V  E  A  R  L  C  W  Y  R  C  P  D  I  N  F  I  L  P  S  G  L  L  F  L  H  V  L  P  L  L  L  Q  S  V  P  G  I  Y  Y  P  P  G  N  W  H  N  L  G  F  P  T  S  C  V  P  D  S  R  I  S  S  Y  S  S  I  S  I  L  W  N  G  P  V  R  C  G  T  Y  S  A  Q  A  G  F  V  L  A  P  T </first_frame>
            <second_frame>  K  L  T  G  N  G  S  R  E  D  N  E  L  L  S  P  S  K  E  G  K  G  K  R  L  W  K  K  V  K  Y  Q  L  V  E  Y  H  S  L  P  G  Y  L  K  D  N  E  Y  I  L  G  H  Y  R  A  E  W  P  L  K  Q  A  L  L  S  I  F  T  I  H  N  E  T  L  N  V  W  T :   H  L  I  G  F  F  L  F  L  A  L  T  I  Y  T  A  T  K  V  P  K  V  V  D  L  H  S  L  Q  N  L  P  D  V  L  R  K  A  D  L  H  K  L  Q  A  E  L  L  T  C  L  P  S  L  P  Y  M  P  D  L  H  K  L  R  D  G  L  L  R  S  P  S  N  W  H  I  I  D  L  L  H  N  C  L  P  E  R  F  S  H  S  N  H  T  D  V  C  V  L  :  R  S  V  K  E  D  V  A  N  I  L  A  P  L  L  V  R  P  I  T  R  W  P  F  Y  A  F  L  G  G  A  M  F  C  L  L  A  S  S  T  C  H  L  L  S  C  H  S  E  R  L  S  Y  I  M  L  R  L  D  Y  A  G  I  A  A  L  I  S  T  S  F  Y  P  P  V  Y  Y  S  F  M  C  Y  P  F  F  C  N  L  Y  L  G  F  I  T  L  L  G  I  G  T  I  L  G  S  L  L  P  V  F  Q  T  P  E  Y  R  V  I  R  A  S  L  F  F  G  M  G  L  S  G  A  V  P  I  L  H  K  L  V  L  F  W  H  Q   </second_frame>
            <third_frame>   N  *  L  V  M  G  Q  G  R  I  M  N  Y  C  L  L  P  R  K  G  K  E  R  D  Y  G  R  K  *  S  T  S  L  W  S  I  I  H  C  L  G  I  *  K  T  T  N  T  F  W  V  I  T  G  P  N  G  H  *  S  K  H  C  S  A  S  S  Q  F  T  M  R  P  S  M  F  G   : R  I  *  *  G  S  S  S  S  L  R  S  Q  F  I  L  Q  P  K  F  P  R  L  *  I  Y  I  P  Y  R  I  C  L  M  C  *  G  R  L  I  C  T  N  Y  K  Q  N  F  *  L  V  F  L  L  C  R  I  C  L  I  C  T  N  F  E  M  V  C  Y  V  H  P  L  I  G  I  L  L  T  S  C  T  T  V  C  L  S  D  F  P  T  A  T  I  Q  M  F  V  Y  C :   G  V  *  K  K  M  W  Q  I  Y  *  H  H  C  W  *  D  Q  *  L  A  G  H  S  M  P  S  L  V  G  Q  C  F  V  C  *  Q  A  A  H  V  I  Y  F  L  A  I  Q  S  V  Y  H  T  S  C  *  G  S  T  M  L  V  S  L  P  *  Y  Q  L  H  F  T  L  R  S  I  I  P  S  C  V  T  P  S  F  A  I  C  T  W  D  L  L  P  S  W  E  L  A  Q  S  W  V  P  Y  F  L  C  S  R  L  P  N  I  E  L  F  E  H  L  Y  S  L  E  W  A  C  Q  V  R  Y  L  F  C  T  S  W  F  C  F  G  T  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030E13.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65612" stop="65844"/>
                    <exon start="66554" stop="66851"/>
                    <exon start="67674" stop="68102"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>960</number_coding_nucleotides>
                  <number_encoded_amino_acids>320</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLTGNGSREDNELLSPSKEGKGKRLWKKVKYQLVEYHSLPGYLKDNEYILGHYRAEWPLKQALLSIFTIHNETLNVWTHLIGFFLFLALTIYTATKVPKVVDLHSLQNLPDVLRKADLHKLQAELLTCLPSLPYMPDLHKLRDGLLRSPSNWHIIDLLHNCLPERFSHSNHTDVCVLRSVKEDVANILAPLLVRPITRWPFYAFLGGAMFCLLASSTCHLLSCHSERLSYIMLRLDYAGIAALISTSFYPPVYYSFMCYPFFCNLYLGFITLLGIGTILGSLLPVFQTPEYRVIRASLFFGMGLSGAVPILHKLVLFWHQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="68189" PGL_stop="68534"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68189" e_stop="68534"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="68189" e_stop="68534" e_length="346"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68189" stop="68534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613543" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAAGATGGATGCCTGGGAAGTTTGACATTGCTGGCCACAGCCACCAACTATTTCATGTACTCGTGGTGGCAGGGGCTTATACGCATTACCGCGCTGGATTGGTTTATCTGAGGTGGCGGGACCTGCAAGGGTGCTAAGATCCACTCAAAAACTGATAAGTCAGTGAGAATTCTTAGTTCAATTGTACGTAAACGTAGAGAAGATGTTTCGTTTGTCCATCTTCGTTAATAAATGTTCCATTTAGAAAGATTGATCCTCTAGACTCTAGTACAGTATATGATCAGTCTCAATATGTACTAGTGTATTATGTTTGGTATGATCTGTATTTAAGTTTTTTAGAGAAT</gDNA_template>
            <first_frame> R  K  M  D  A  W  E  V  *  H  C  W  P  Q  P  P  T  I  S  C  T  R  G  G  R  G  L  Y  A  L  P  R  W  I  G  L  S  E  V  A  G  P  A  R  V  L  R  S  T  Q  K  L  I  S  Q  *  E  F  L  V  Q  L  Y  V  N  V  E  K  M  F  R  L  S  I  F  V  N  K  C  S  I  *  K  D  *  S  S  R  L  *  Y  S  I  *  S  V  S  I  C  T  S  V  L  C  L  V  *  S  V  F  K  F  F  R  E  </first_frame>
            <second_frame>  E  R  W  M  P  G  K  F  D  I  A  G  H  S  H  Q  L  F  H  V  L  V  V  A  G  A  Y  T  H  Y  R  A  G  L  V  Y  L  R  W  R  D  L  Q  G  C  *  D  P  L  K  N  *  *  V  S  E  N  S  *  F  N  C  T  *  T  *  R  R  C  F  V  C  P  S  S  L  I  N  V  P  F  R  K  I  D  P  L  D  S  S  T  V  Y  D  Q  S  Q  Y  V  L  V  Y  Y  V  W  Y  D  L  Y  L  S  F  L  E  N </second_frame>
            <third_frame>   K  D  G  C  L  G  S  L  T  L  L  A  T  A  T  N  Y  F  M  Y  S  W  W  Q  G  L  I  R  I  T  A  L  D  W  F  I  *  G  G  G  T  C  K  G  A  K  I  H  S  K  T  D  K  S  V  R  I  L  S  S  I  V  R  K  R  R  E  D  V  S  F  V  H  L  R  *  *  M  F  H  L  E  R  L  I  L  *  T  L  V  Q  Y  M  I  S  L  N  M  Y  *  C  I  M  F  G  M  I  C  I  *  V  F  *  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0030E13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="74562" PGL_stop="76371"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74562" e_stop="76371"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="74562" e_stop="76371" e_length="1810"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74562" stop="76349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74571" stop="75042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74577" stop="75359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74588" stop="75246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74594" stop="74963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74599" stop="74939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74840" stop="75646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699358" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75562" stop="76332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711413" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75642" stop="76371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75642" stop="76367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75642" stop="76362"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75642" stop="76194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75642" stop="76163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75882" stop="76353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203195" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75935" stop="76358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75996" stop="76358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76000" stop="76358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76017" stop="76358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76045" stop="76358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76048" stop="76358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225994" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGACAATGGCAGCAAGTTTAGTGAGGTGATGAACACTTGTTTCTACTCACTTCACTTCACCGACACCCATCTCCTTATCTACTTTTCTATCGTCACATACTCGACGGAATTTGTATGCTTTCTTAGTTACTGCCAAAATTGCTCTTCGAACTATCTTCTTAACACACAGAACCAAAGCTGGACACAATGTCCAGTAGATGGTGACAACTTTTTTATTGCTACTAGACGTAAAGCCAGCTTGCCTGGGTAACGTATGCACTCCCTCATAAAATGGTAACGCCTCAGTTGCCCCAAACTCATACATCTTACACATCCATGGCTAAGCAAAACTGTAGAAGTAAAATTTCTTCTATTTTCTCTGATGGATTTCTCTTTGCTGGTGCAAGTATTGTGGCTTTGCTAGTAATATGGGCCTTTTGGTCCTTCATGAGCACTAGTCCAAATGCCGATCCCAGTTTTTTAACCACTTCCGCCGACCAAAACTCCGCCTTGAAAACTCAGGTAGACCCGGTTTCATTAGGCTTCAATTTACGGTACGACCCGCCCGACCCGACTTTCTATGACGACCCGGATTTGAGTTACACTATGGAGAAGCCGATTAAGAAGTGGGACGAGAAACGAAGGCAATGGCTGAATTTGCATCCCTCTTTCATCCCCGGAGCAGAGGAACGGATTCTGATGGTTTCCGGTTCACAGTCGACGCCGTGTAAGAACCCAATAGGCGACCATTTGCTGCTTAGATTCTTCAAGAACAAAGTAGACTACTGCCGAATCCACGGGTACGATATTTTTTACAACAACGTTTTACTTCAGCCTAAGATGTGGTCGTTTTGGGCGAAAATGCCGGCGATTAAAGCTGCCATGATAGCTCATCCTGAAACTGAGTGGATCTGGTGGGTCGATTCAGATGCTGCGTTCACCGACATGGACTTCAAACTTCCTTTGGATCGTTACAAAGACCATAATTTCGTACTTCATGGTTGGGAAAAGTTATTATACGAGCAACAAAGCTGGACAAGCATCAATGCCGGAGTTTTCTTGATTCGGAACTGTCAATGGTCCATGGACTTAATGGAAACTTGGGCGAAAATGGGGCCACAGTCACCGGAATACGACAAGTGGGGTGAAATCTTACATACAACTTTCAAAGACAAGATATTCCAGGAATCGGATGACCAATCCGGTCTAGCATATCTACTTTTGAAGGAAAAGGAAAAATGGGGTAACAAAATATACGTAGAAGGGGGATATTACTTCGAGGGGTATTGGGTGGAAATCGTGGGAACGTACGATAACATCACCGACAGGTATTTAGCAATAGAGAAAAGTGAAGGGAGGCTAAGAAGAAGACACGCAGAGAGGGTGAGTGAGAGTTATGCTAGTGTATGGGAAGAACACCTTAAGGAAGCTGGGTATGGGAGATACAGTTGGAGAAGGCCATTCATCACACATTTCACAGGGTGTCAGCCATGTAGTGGAGATCATAATCAGATGTATTCTGGTGAAACTTGTTTTGATGCTATGCAGAAAGCTTTGAATTTTGCTGATAATCAGGTGTTGAGAAAGTATGGGTATATGCATAAGGATCTGCTTGATTCTTCCTCTGTTTTTCCTGTTCCTTTTAACTTTCCTGCCTAATACTTCCGTTCTTTTAAGTTCTATGTATACACATGTATGTACCTATTTTGTAGTAGTTTGCTTTCGTTTTACTTCGTATTTTTATGGTGCAATGTTGTAAGCTAGTTGTAATATGGAGTTTAACTTATATATAGTCACCACTTGAAGAAATTTATACTATTCAAACAGTGT</gDNA_template>
            <first_frame> Q  T  M  A  A  S  L  V  R  *  *  T  L  V  S  T  H  F  T  S  P  T  P  I  S  L  S  T  F  L  S  S  H  T  R  R  N  L  Y  A  F  L  V  T  A  K  I  A  L  R  T  I  F  L  T  H  R  T  K  A  G  H  N  V  Q  *  M  V  T  T  F  L  L  L  L  D  V  K  P  A  C  L  G  N  V  C  T  P  S  *  N  G  N  A  S  V  A  P  N  S  Y  I  L  H  I  H  G  *  A  K  L  *  K  *  N  F  F  Y  F  L  *  W  I  S  L  C  W  C  K  Y  C  G  F  A  S  N  M  G  L  L  V  L  H  E  H  *  S  K  C  R  S  Q  F  F  N  H  F  R  R  P  K  L  R  L  E  N  S  G  R  P  G  F  I  R  L  Q  F  T  V  R  P  A  R  P  D  F  L  *  R  P  G  F  E  L  H  Y  G  E  A  D  *  E  V  G  R  E  T  K  A  M  A  E  F  A  S  L  F  H  P  R  S  R  G  T  D  S  D  G  F  R  F  T  V  D  A  V  *  E  P  N  R  R  P  F  A  A  *  I  L  Q  E  Q  S  R  L  L  P  N  P  R  V  R  Y  F  L  Q  Q  R  F  T  S  A  *  D  V  V  V  L  G  E  N  A  G  D  *  S  C  H  D  S  S  S  *  N  *  V  D  L  V  G  R  F  R  C  C  V  H  R  H  G  L  Q  T  S  F  G  S  L  Q  R  P  *  F  R  T  S  W  L  G  K  V  I  I  R  A  T  K  L  D  K  H  Q  C  R  S  F  L  D  S  E  L  S  M  V  H  G  L  N  G  N  L  G  E  N  G  A  T  V  T  G  I  R  Q  V  G  *  N  L  T  Y  N  F  Q  R  Q  D  I  P  G  I  G  *  P  I  R  S  S  I  S  T  F  E  G  K  G  K  M  G  *  Q  N  I  R  R  R  G  I  L  L  R  G  V  L  G  G  N  R  G  N  V  R  *  H  H  R  Q  V  F  S  N  R  E  K  *  R  E  A  K  K  K  T  R  R  E  G  E  *  E  L  C  *  C  M  G  R  T  P  *  G  S  W  V  W  E  I  Q  L  E  K  A  I  H  H  T  F  H  R  V  S  A  M  *  W  R  S  *  S  D  V  F  W  *  N  L  F  *  C  Y  A  E  S  F  E  F  C  *  *  S  G  V  E  K  V  W  V  Y  A  *  G  S  A  *  F  F  L  C  F  S  C  S  F  *  L  S  C  L  I  L  P  F  F  *  V  L  C  I  H  M  Y  V  P  I  L  *  *  F  A  F  V  L  L  R  I  F  M  V  Q  C  C  K  L  V  V  I  W  S  L  T  Y  I  *  S  P  L  E  E  I  Y  T  I  Q  T  V  </first_frame>
            <second_frame>  R  Q  W  Q  Q  V  *  *  G  D  E  H  L  F  L  L  T  S  L  H  R  H  P  S  P  Y  L  L  F  Y  R  H  I  L  D  G  I  C  M  L  S  *  L  L  P  K  L  L  F  E  L  S  S  *  H  T  E  P  K  L  D  T  M  S  S  R  W  *  Q  L  F  Y  C  Y  *  T  *  S  Q  L  A  W  V  T  Y  A  L  P  H  K  M  V  T  P  Q  L  P  Q  T  H  T  S  Y  T  S  M  A  K  Q  N  C  R  S  K  I  S  S  I  F  S  D  G  F  L  F  A  G  A  S  I  V  A  L  L  V  I  W  A  F  W  S  F  M  S  T  S  P  N  A  D  P  S  F  L  T  T  S  A  D  Q  N  S  A  L  K  T  Q  V  D  P  V  S  L  G  F  N  L  R  Y  D  P  P  D  P  T  F  Y  D  D  P  D  L  S  Y  T  M  E  K  P  I  K  K  W  D  E  K  R  R  Q  W  L  N  L  H  P  S  F  I  P  G  A  E  E  R  I  L  M  V  S  G  S  Q  S  T  P  C  K  N  P  I  G  D  H  L  L  L  R  F  F  K  N  K  V  D  Y  C  R  I  H  G  Y  D  I  F  Y  N  N  V  L  L  Q  P  K  M  W  S  F  W  A  K  M  P  A  I  K  A  A  M  I  A  H  P  E  T  E  W  I  W  W  V  D  S  D  A  A  F  T  D  M  D  F  K  L  P  L  D  R  Y  K  D  H  N  F  V  L  H  G  W  E  K  L  L  Y  E  Q  Q  S  W  T  S  I  N  A  G  V  F  L  I  R  N  C  Q  W  S  M  D  L  M  E  T  W  A  K  M  G  P  Q  S  P  E  Y  D  K  W  G  E  I  L  H  T  T  F  K  D  K  I  F  Q  E  S  D  D  Q  S  G  L  A  Y  L  L  L  K  E  K  E  K  W  G  N  K  I  Y  V  E  G  G  Y  Y  F  E  G  Y  W  V  E  I  V  G  T  Y  D  N  I  T  D  R  Y  L  A  I  E  K  S  E  G  R  L  R  R  R  H  A  E  R  V  S  E  S  Y  A  S  V  W  E  E  H  L  K  E  A  G  Y  G  R  Y  S  W  R  R  P  F  I  T  H  F  T  G  C  Q  P  C  S  G  D  H  N  Q  M  Y  S  G  E  T  C  F  D  A  M  Q  K  A  L  N  F  A  D  N  Q  V  L  R  K  Y  G  Y  M  H  K  D  L  L  D  S  S  S  V  F  P  V  P  F  N  F  P  A  *  Y  F  R  S  F  K  F  Y  V  Y  T  C  M  Y  L  F  C  S  S  L  L  S  F  Y  F  V  F  L  W  C  N  V  V  S  *  L  *  Y  G  V  *  L  I  Y  S  H  H  L  K  K  F  I  L  F  K  Q  C </second_frame>
            <third_frame>   D  N  G  S  K  F  S  E  V  M  N  T  C  F  Y  S  L  H  F  T  D  T  H  L  L  I  Y  F  S  I  V  T  Y  S  T  E  F  V  C  F  L  S  Y  C  Q  N  C  S  S  N  Y  L  L  N  T  Q  N  Q  S  W  T  Q  C  P  V  D  G  D  N  F  F  I  A  T  R  R  K  A  S  L  P  G  *  R  M  H  S  L  I  K  W  *  R  L  S  C  P  K  L  I  H  L  T  H  P  W  L  S  K  T  V  E  V  K  F  L  L  F  S  L  M  D  F  S  L  L  V  Q  V  L  W  L  C  *  *  Y  G  P  F  G  P  S  *  A  L  V  Q  M  P  I  P  V  F  *  P  L  P  P  T  K  T  P  P  *  K  L  R  *  T  R  F  H  *  A  S  I  Y  G  T  T  R  P  T  R  L  S  M  T  T  R  I  *  V  T  L  W  R  S  R  L  R  S  G  T  R  N  E  G  N  G  *  I  C  I  P  L  S  S  P  E  Q  R  N  G  F  *  W  F  P  V  H  S  R  R  R  V  R  T  Q  *  A  T  I  C  C  L  D  S  S  R  T  K  *  T  T  A  E  S  T  G  T  I  F  F  T  T  T  F  Y  F  S  L  R  C  G  R  F  G  R  K  C  R  R  L  K  L  P  *  *  L  I  L  K  L  S  G  S  G  G  S  I  Q  M  L  R  S  P  T  W  T  S  N  F  L  W  I  V  T  K  T  I  I  S  Y  F  M  V  G  K  S  Y  Y  T  S  N  K  A  G  Q  A  S  M  P  E  F  S  *  F  G  T  V  N  G  P  W  T  *  W  K  L  G  R  K  W  G  H  S  H  R  N  T  T  S  G  V  K  S  Y  I  Q  L  S  K  T  R  Y  S  R  N  R  M  T  N  P  V  *  H  I  Y  F  *  R  K  R  K  N  G  V  T  K  Y  T  *  K  G  D  I  T  S  R  G  I  G  W  K  S  W  E  R  T  I  T  S  P  T  G  I  *  Q  *  R  K  V  K  G  G  *  E  E  D  T  Q  R  G  *  V  R  V  M  L  V  Y  G  K  N  T  L  R  K  L  G  M  G  D  T  V  G  E  G  H  S  S  H  I  S  Q  G  V  S  H  V  V  E  I  I  I  R  C  I  L  V  K  L  V  L  M  L  C  R  K  L  *  I  L  L  I  I  R  C  *  E  S  M  G  I  C  I  R  I  C  L  I  L  P  L  F  F  L  F  L  L  T  F  L  P  N  T  S  V  L  L  S  S  M  Y  T  H  V  C  T  Y  F  V  V  V  C  F  R  F  T  S  Y  F  Y  G  A  M  L  *  A  S  C  N  M  E  F  N  L  Y  I  V  T  T  *  R  N  L  Y  Y  S  N  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030E13.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74794" stop="76200"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1404</number_coding_nucleotides>
                  <number_encoded_amino_acids>468</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQLAWVTYALPHKMVTPQLPQTHTSYTSMAKQNCRSKISSIFSDGFLFAGASIVALLVIWAFWSFMSTSPNADPSFLTTSADQNSALKTQVDPVSLGFNLRYDPPDPTFYDDPDLSYTMEKPIKKWDEKRRQWLNLHPSFIPGAEERILMVSGSQSTPCKNPIGDHLLLRFFKNKVDYCRIHGYDIFYNNVLLQPKMWSFWAKMPAIKAAMIAHPETEWIWWVDSDAAFTDMDFKLPLDRYKDHNFVLHGWEKLLYEQQSWTSINAGVFLIRNCQWSMDLMETWAKMGPQSPEYDKWGEILHTTFKDKIFQESDDQSGLAYLLLKEKEKWGNKIYVEGGYYFEGYWVEIVGTYDNITDRYLAIEKSEGRLRRRHAERVSESYASVWEEHLKEAGYGRYSWRRPFITHFTGCQPCSGDHNQMYSGETCFDAMQKALNFADNQVLRKYGYMHKDLLDSSSVFPVPFNFPA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030E13.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74564" stop="74812"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DNGSKFSEVMNTCFYSLHFTDTHLLIYFSIVTYSTEFVCFLSYCQNCSSNYLLNTQNQSWTQCPVDGDNFFIATRRKASLPG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="74996" PGL_stop="74569"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74996" e_stop="74569"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="74996" e_stop="74569" e_length="428"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74996" stop="74569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277322" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGCTCATGAAGGACCAAAAGGCCCATATTACTAGCAAAGCCACAATACTTGCACCAGCAAAGAGAAATCCATCAGAGAAAATAGAAGAAATTTTACTTCTACAGTTTTGCTTAGCCATGGATGTGTAAGATGTATGAGTTTGGGGCAACTGAGGCGTTACCATTTTATGAGGGAGTGCATACGTTACCCAGGCAAGCTGGCTTTACGTCTAGTAGCAATAAAAAAGTTGTCACCATCTACTGGACATTGTGTCCAGCTTTGGTTCTGTGTGTTAAGAAGATAGTTCGAAGAGCAATTTTGGCAGTAACTAAGAAAGCATACAAATTCCGTCGAGTATGTGACGATAGAAAAGTAGATAAGGAGATGGGTGTCGGTGAAGTGAAGTGAGTAGAAACAAGTGTTCATCACCTCACTAAACTTGCTGCCA</gDNA_template>
            <first_frame> V  L  M  K  D  Q  K  A  H  I  T  S  K  A  T  I  L  A  P  A  K  R  N  P  S  E  K  I  E  E  I  L  L  L  Q  F  C  L  A  M  D  V  *  D  V  *  V  W  G  N  *  G  V  T  I  L  *  G  S  A  Y  V  T  Q  A  S  W  L  Y  V  *  *  Q  *  K  S  C  H  H  L  L  D  I  V  S  S  F  G  S  V  C  *  E  D  S  S  K  S  N  F  G  S  N  *  E  S  I  Q  I  P  S  S  M  *  R  *  K  S  R  *  G  D  G  C  R  *  S  E  V  S  R  N  K  C  S  S  P  H  *  T  C  C   </first_frame>
            <second_frame>  C  S  *  R  T  K  R  P  I  L  L  A  K  P  Q  Y  L  H  Q  Q  R  E  I  H  Q  R  K  *  K  K  F  Y  F  Y  S  F  A  *  P  W  M  C  K  M  Y  E  F  G  A  T  E  A  L  P  F  Y  E  G  V  H  T  L  P  R  Q  A  G  F  T  S  S  S  N  K  K  V  V  T  I  Y  W  T  L  C  P  A  L  V  L  C  V  K  K  I  V  R  R  A  I  L  A  V  T  K  K  A  Y  K  F  R  R  V  C  D  D  R  K  V  D  K  E  M  G  V  G  E  V  K  *  V  E  T  S  V  H  H  L  T  K  L  A  A  </second_frame>
            <third_frame>   A  H  E  G  P  K  G  P  Y  Y  *  Q  S  H  N  T  C  T  S  K  E  K  S  I  R  E  N  R  R  N  F  T  S  T  V  L  L  S  H  G  C  V  R  C  M  S  L  G  Q  L  R  R  Y  H  F  M  R  E  C  I  R  Y  P  G  K  L  A  L  R  L  V  A  I  K  K  L  S  P  S  T  G  H  C  V  Q  L  W  F  C  V  L  R  R  *  F  E  E  Q  F  W  Q  *  L  R  K  H  T  N  S  V  E  Y  V  T  I  E  K  *  I  R  R  W  V  S  V  K  *  S  E  *  K  Q  V  F  I  T  S  L  N  L  L  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030E13.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74881" stop="74609"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PWMCKMYEFGATEALPFYEGVHTLPRQAGFTSSSNKKVVTIYWTLCPALVLCVKKIVRRAILAVTKKAYKFRRVCDDRKVDKEMGVGEVK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030E13.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74961" stop="74713"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSHNTCTSKEKSIRENRRNFTSTVLLSHGCVRCMSLGQLRRYHFMRECIRYPGKLALRLVAIKKLSPSTGHCVQLWFCVLRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="77010" PGL_stop="76019"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77010" e_stop="76983"/>
            <exon e_start="76369" e_stop="76019"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.760" acc_prob="0.000" e_score="0.821"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.821">
            <gDNA_exon_boundary e_start="77010" e_stop="76983" e_length="28"/>
          </exon>
          <intron i_serial="1" don_prob="0.760" acc_prob="0.000">
            <gDNA_intron_boundary i_start="76982" i_stop="76370" i_length="613"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="76369" e_stop="76019" e_length="351"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77010" stop="76983"/>
              <exon start="76369" stop="76019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222197" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGCTTTTGTTTTTTATTTAAAAAAAAC : ACTGTTTGAATAGTATAAATTTCTTCAAGTGGTGACTATATATAAGTTAAACTCCATATTACAACTAGCTTACAACATTGCACCATAAAAATACGAAGTAAAACGAAAGCAAACTACTACAAAATAGGTACATACATGTGTATACATAGAACTTAAAAGAACGGAAGTATTAGGCAGGAAAGTTAAAAGGAACAGGAAAAACAGAGGAAGAATCAAGCAGATCCTTATGCATATACCCATACTTTCTCAACACCTGATTATCAGCAAAATTCAAAGCTTTCTGCATAGCATCAAAACAAGTTTCACCAGAATACATCTGATTATGATCTCCACTACATGGCTGACACCCTG</gDNA_template>
            <first_frame> *  L  L  F  F  I  *  K  K   : H  C  L  N  S  I  N  F  F  K  W  *  L  Y  I  S  *  T  P  Y  Y  N  *  L  T  T  L  H  H  K  N  T  K  *  N  E  S  K  L  L  Q  N  R  Y  I  H  V  Y  T  *  N  L  K  E  R  K  Y  *  A  G  K  L  K  G  T  G  K  T  E  E  E  S  S  R  S  L  C  I  Y  P  Y  F  L  N  T  *  L  S  A  K  F  K  A  F  C  I  A  S  K  Q  V  S  P  E  Y  I  *  L  *  S  P  L  H  G  *  H  P  </first_frame>
            <second_frame>  S  F  C  F  L  F  K  K  N  :  T  V  *  I  V  *  I  S  S  S  G  D  Y  I  *  V  K  L  H  I  T  T  S  L  Q  H  C  T  I  K  I  R  S  K  T  K  A  N  Y  Y  K  I  G  T  Y  M  C  I  H  R  T  *  K  N  G  S  I  R  Q  E  S  *  K  E  Q  E  K  Q  R  K  N  Q  A  D  P  Y  A  Y  T  H  T  F  S  T  P  D  Y  Q  Q  N  S  K  L  S  A  *  H  Q  N  K  F  H  Q  N  T  S  D  Y  D  L  H  Y  M  A  D  T  L </second_frame>
            <third_frame>   A  F  V  F  Y  L  K  K  T :   L  F  E  *  Y  K  F  L  Q  V  V  T  I  Y  K  L  N  S  I  L  Q  L  A  Y  N  I  A  P  *  K  Y  E  V  K  R  K  Q  T  T  T  K  *  V  H  T  C  V  Y  I  E  L  K  R  T  E  V  L  G  R  K  V  K  R  N  R  K  N  R  G  R  I  K  Q  I  L  M  H  I  P  I  L  S  Q  H  L  I  I  S  K  I  Q  S  F  L  H  S  I  K  T  S  F  T  R  I  H  L  I  M  I  S  T  T  W  L  T  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030E13.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76242" stop="76021"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VHTCVYIELKRTEVLGRKVKRNRKNRGRIKQILMHIPILSQHLIISKIQSFLHSIKTSFTRIHLIMISTTWLTP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="81913" PGL_stop="80399"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81913" e_stop="80399"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="81913" e_stop="80399" e_length="1515"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81913" stop="80507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81906" stop="81188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81906" stop="81378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81331" stop="80645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80749" stop="80399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357476" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCACTCACATACCATAGTTTCAGTATCTTTCCTTTTCATTCACAACGGGCCATGGCCCATAACGTGTTTCGGGCCAAACAGCAATCGTCTTCTCCGAGAGACAAATCTCTGTTCGCGGCCGTCATAGTTGCGGTTCTACTTGTCTGTGCTATTTGGTCATTTACTGATCCTTTGCCTAATTTATCAGGTTTATTATACAATCAGAATATTAGTTCACCCGAATATTGCCCACCGGGACGGGAAGCTGTTGACCGGAGTTCCGACCCGCCGGAGAAAACATTCTACAATGACCCGGAACTCAGTTACACTATTGACAAACCAATAAAAAATTGGGACGAAAAGAGAGTTCAGTGGCTGCAGCTTCATCCTTCGTTCGCCGCCGGAAGAGTTAACCGTGTGCTCCTCCTCTCAGGATCACAGCCCACACCATGCAAAAACCCTAGAGGTGATCATTTACTGTTAAGGTTTTTTAAAAACAAAGTTGACTACTGTAGAATCCATGGCTACGATATTTTCTACGGAAACACGTTTTTTCACCCTAAAATGCGTTCTTATTGGGCGAAAATACCGCTTGTTCGGGCCGCCATGCTGGCTCATCCTGAATCCGAGTGGATTCTATGGGTTGACTCAGATGCAATCTTCACTGACATGGATTTCAAAATTCCATTACACAAATATAATGACTACAACTTCATCGTCCACGGCTGGCCTGATTTGATTTTTAAGAAGAAAAGCTGGGTCGCTATAAATGCTGGGATTTTTCTTATTCGAAACTGTCAATGGTCCATGGATTTCTTAGATGTTTGGGCTAATATGGGCCCGAAAAGCCCAGAATACAAGCAATGGGGCAAAATCTTACGAACAACTTTCAAGGACAAAACGTTCCCGGAGTCCGACGACCAATCCGCACTGAGCTATTTAATACTGAAAGGAGAACAAAAATGGCGGAGCAAAATTCACGCAATTACTGATTACTCTCTACACGGATACTGGCTAGGAATAGTAAACAGATTTGAAAACATAACAGCGAATTACATGAAGATAGAGAGAGATGTACCCAAGTTACGGAGGAGACACGCGGAGGCTGTGAGCCACAGCTACGCGGCCGCGTGGGAGCCCTTGTTGGCGGAGGGCGCTGACGAAAAGGGCGGATGGAGGCGGCCGTTTATCACGCACTTCACGGGGTGTCAGCCATGTAGTGGGGACCACGCGACGGAGTATGTGGGTGATTCATGTTGGGTGGGAATGGAACGAGCGTTGAACTTTGCGGATAATCAGGTGCTACGTAACTTTGGGTTCATGCATGATGACATCAAAAGTAATTCCCCTGTCTCTCCCTTAAATTTCGATTTTCCGGCTGAAGACAGTGAAGAATTCGTGTGAAAGAAAAAAAACATGACCTCAGGTTTTTACTGTAGGATTAAAAAGACACAAGTCCTGTGAATTTTGGATGTTCTTTTAATTCAGTATCAATGTATTTGATAGTTATTGTAATAGTAAACAATGTTTTTTA</gDNA_template>
            <first_frame> S  H  S  H  T  I  V  S  V  S  F  L  F  I  H  N  G  P  W  P  I  T  C  F  G  P  N  S  N  R  L  L  R  E  T  N  L  C  S  R  P  S  *  L  R  F  Y  L  S  V  L  F  G  H  L  L  I  L  C  L  I  Y  Q  V  Y  Y  T  I  R  I  L  V  H  P  N  I  A  H  R  D  G  K  L  L  T  G  V  P  T  R  R  R  K  H  S  T  M  T  R  N  S  V  T  L  L  T  N  Q  *  K  I  G  T  K  R  E  F  S  G  C  S  F  I  L  R  S  P  P  E  E  L  T  V  C  S  S  S  Q  D  H  S  P  H  H  A  K  T  L  E  V  I  I  Y  C  *  G  F  L  K  T  K  L  T  T  V  E  S  M  A  T  I  F  S  T  E  T  R  F  F  T  L  K  C  V  L  I  G  R  K  Y  R  L  F  G  P  P  C  W  L  I  L  N  P  S  G  F  Y  G  L  T  Q  M  Q  S  S  L  T  W  I  S  K  F  H  Y  T  N  I  M  T  T  T  S  S  S  T  A  G  L  I  *  F  L  R  R  K  A  G  S  L  *  M  L  G  F  F  L  F  E  T  V  N  G  P  W  I  S  *  M  F  G  L  I  W  A  R  K  A  Q  N  T  S  N  G  A  K  S  Y  E  Q  L  S  R  T  K  R  S  R  S  P  T  T  N  P  H  *  A  I  *  Y  *  K  E  N  K  N  G  G  A  K  F  T  Q  L  L  I  T  L  Y  T  D  T  G  *  E  *  *  T  D  L  K  T  *  Q  R  I  T  *  R  *  R  E  M  Y  P  S  Y  G  G  D  T  R  R  L  *  A  T  A  T  R  P  R  G  S  P  C  W  R  R  A  L  T  K  R  A  D  G  G  G  R  L  S  R  T  S  R  G  V  S  H  V  V  G  T  T  R  R  S  M  W  V  I  H  V  G  W  E  W  N  E  R  *  T  L  R  I  I  R  C  Y  V  T  L  G  S  C  M  M  T  S  K  V  I  P  L  S  L  P  *  I  S  I  F  R  L  K  T  V  K  N  S  C  E  R  K  K  T  *  P  Q  V  F  T  V  G  L  K  R  H  K  S  C  E  F  W  M  F  F  *  F  S  I  N  V  F  D  S  Y  C  N  S  K  Q  C  F  L </first_frame>
            <second_frame>  L  T  H  I  P  *  F  Q  Y  L  S  F  S  F  T  T  G  H  G  P  *  R  V  S  G  Q  T  A  I  V  F  S  E  R  Q  I  S  V  R  G  R  H  S  C  G  S  T  C  L  C  Y  L  V  I  Y  *  S  F  A  *  F  I  R  F  I  I  Q  S  E  Y  *  F  T  R  I  L  P  T  G  T  G  S  C  *  P  E  F  R  P  A  G  E  N  I  L  Q  *  P  G  T  Q  L  H  Y  *  Q  T  N  K  K  L  G  R  K  E  S  S  V  A  A  A  S  S  F  V  R  R  R  K  S  *  P  C  A  P  P  L  R  I  T  A  H  T  M  Q  K  P  *  R  *  S  F  T  V  K  V  F  *  K  Q  S  *  L  L  *  N  P  W  L  R  Y  F  L  R  K  H  V  F  S  P  *  N  A  F  L  L  G  E  N  T  A  C  S  G  R  H  A  G  S  S  *  I  R  V  D  S  M  G  *  L  R  C  N  L  H  *  H  G  F  Q  N  S  I  T  Q  I  *  *  L  Q  L  H  R  P  R  L  A  *  F  D  F  *  E  E  K  L  G  R  Y  K  C  W  D  F  S  Y  S  K  L  S  M  V  H  G  F  L  R  C  L  G  *  Y  G  P  E  K  P  R  I  Q  A  M  G  Q  N  L  T  N  N  F  Q  G  Q  N  V  P  G  V  R  R  P  I  R  T  E  L  F  N  T  E  R  R  T  K  M  A  E  Q  N  S  R  N  Y  *  L  L  S  T  R  I  L  A  R  N  S  K  Q  I  *  K  H  N  S  E  L  H  E  D  R  E  R  C  T  Q  V  T  E  E  T  R  G  G  C  E  P  Q  L  R  G  R  V  G  A  L  V  G  G  G  R  *  R  K  G  R  M  E  A  A  V  Y  H  A  L  H  G  V  S  A  M  *  W  G  P  R  D  G  V  C  G  *  F  M  L  G  G  N  G  T  S  V  E  L  C  G  *  S  G  A  T  *  L  W  V  H  A  *  *  H  Q  K  *  F  P  C  L  S  L  K  F  R  F  S  G  *  R  Q  *  R  I  R  V  K  E  K  K  H  D  L  R  F  L  L  *  D  *  K  D  T  S  P  V  N  F  G  C  S  F  N  S  V  S  M  Y  L  I  V  I  V  I  V  N  N  V  F   </second_frame>
            <third_frame>   S  L  T  Y  H  S  F  S  I  F  P  F  H  S  Q  R  A  M  A  H  N  V  F  R  A  K  Q  Q  S  S  S  P  R  D  K  S  L  F  A  A  V  I  V  A  V  L  L  V  C  A  I  W  S  F  T  D  P  L  P  N  L  S  G  L  L  Y  N  Q  N  I  S  S  P  E  Y  C  P  P  G  R  E  A  V  D  R  S  S  D  P  P  E  K  T  F  Y  N  D  P  E  L  S  Y  T  I  D  K  P  I  K  N  W  D  E  K  R  V  Q  W  L  Q  L  H  P  S  F  A  A  G  R  V  N  R  V  L  L  L  S  G  S  Q  P  T  P  C  K  N  P  R  G  D  H  L  L  L  R  F  F  K  N  K  V  D  Y  C  R  I  H  G  Y  D  I  F  Y  G  N  T  F  F  H  P  K  M  R  S  Y  W  A  K  I  P  L  V  R  A  A  M  L  A  H  P  E  S  E  W  I  L  W  V  D  S  D  A  I  F  T  D  M  D  F  K  I  P  L  H  K  Y  N  D  Y  N  F  I  V  H  G  W  P  D  L  I  F  K  K  K  S  W  V  A  I  N  A  G  I  F  L  I  R  N  C  Q  W  S  M  D  F  L  D  V  W  A  N  M  G  P  K  S  P  E  Y  K  Q  W  G  K  I  L  R  T  T  F  K  D  K  T  F  P  E  S  D  D  Q  S  A  L  S  Y  L  I  L  K  G  E  Q  K  W  R  S  K  I  H  A  I  T  D  Y  S  L  H  G  Y  W  L  G  I  V  N  R  F  E  N  I  T  A  N  Y  M  K  I  E  R  D  V  P  K  L  R  R  R  H  A  E  A  V  S  H  S  Y  A  A  A  W  E  P  L  L  A  E  G  A  D  E  K  G  G  W  R  R  P  F  I  T  H  F  T  G  C  Q  P  C  S  G  D  H  A  T  E  Y  V  G  D  S  C  W  V  G  M  E  R  A  L  N  F  A  D  N  Q  V  L  R  N  F  G  F  M  H  D  D  I  K  S  N  S  P  V  S  P  L  N  F  D  F  P  A  E  D  S  E  E  F  V  *  K  K  K  N  M  T  S  G  F  Y  C  R  I  K  K  T  Q  V  L  *  I  L  D  V  L  L  I  Q  Y  Q  C  I  *  *  L  L  *  *  *  T  M  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030E13.1" strand="-"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81911" stop="80529"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1380</number_coding_nucleotides>
                  <number_encoded_amino_acids>460</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLTYHSFSIFPFHSQRAMAHNVFRAKQQSSSPRDKSLFAAVIVAVLLVCAIWSFTDPLPNLSGLLYNQNISSPEYCPPGREAVDRSSDPPEKTFYNDPELSYTIDKPIKNWDEKRVQWLQLHPSFAAGRVNRVLLLSGSQPTPCKNPRGDHLLLRFFKNKVDYCRIHGYDIFYGNTFFHPKMRSYWAKIPLVRAAMLAHPESEWILWVDSDAIFTDMDFKIPLHKYNDYNFIVHGWPDLIFKKKSWVAINAGIFLIRNCQWSMDFLDVWANMGPKSPEYKQWGKILRTTFKDKTFPESDDQSALSYLILKGEQKWRSKIHAITDYSLHGYWLGIVNRFENITANYMKIERDVPKLRRRHAEAVSHSYAAAWEPLLAEGADEKGGWRRPFITHFTGCQPCSGDHATEYVGDSCWVGMERALNFADNQVLRNFGFMHDDIKSNSPVSPLNFDFPAEDSEEFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="89782" PGL_stop="89312"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89782" e_stop="89312"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.921"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="89782" e_stop="89312" e_length="471"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89782" stop="89312"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619597" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTTTCTTCTTATCAGTCCTTTTTTCTTGCATATCTGTATTTGCCAATAATACTCAACATTCGACGATTCAAATTCTTGGATATCAAAGTTTGAAAATGAGTACAAACAAGGGAAGCAAAGAGAGTAGACTCACGAGGTGCATAAAAGCACCAATTAGAGTTTTAATTAAAGCAAGAGACTGTTACGTCCATAGCTTGATGGATTGTTCTGGAAAAATTGGGTATGGCAGTGTTATGGGTGTTCCACAAATCTCTGCTTTACCGAGAAGTTTCAGTGTCAATTCATCTGTATCTAGTAGCAGGGACGAAGATTTCAGGGAGCTGGTGCGAATTGCTTCCAGAAAAAGTCTGGTAAACAAAATGGAAACAGAGCTTCTGAGACAAAAATCAATTGCTAGTAAAAATGTTGATGCGGTGCCACGGAGTCGATCTGTTGCAATTGGAAGAATCGATGAAGATAAGCCATGTGA</gDNA_template>
            <first_frame> Y  F  L  L  I  S  P  F  F  L  H  I  C  I  C  Q  *  Y  S  T  F  D  D  S  N  S  W  I  S  K  F  E  N  E  Y  K  Q  G  K  Q  R  E  *  T  H  E  V  H  K  S  T  N  *  S  F  N  *  S  K  R  L  L  R  P  *  L  D  G  L  F  W  K  N  W  V  W  Q  C  Y  G  C  S  T  N  L  C  F  T  E  K  F  Q  C  Q  F  I  C  I  *  *  Q  G  R  R  F  Q  G  A  G  A  N  C  F  Q  K  K  S  G  K  Q  N  G  N  R  A  S  E  T  K  I  N  C  *  *  K  C  *  C  G  A  T  E  S  I  C  C  N  W  K  N  R  *  R  *  A  M  * </first_frame>
            <second_frame>  I  F  F  L  S  V  L  F  S  C  I  S  V  F  A  N  N  T  Q  H  S  T  I  Q  I  L  G  Y  Q  S  L  K  M  S  T  N  K  G  S  K  E  S  R  L  T  R  C  I  K  A  P  I  R  V  L  I  K  A  R  D  C  Y  V  H  S  L  M  D  C  S  G  K  I  G  Y  G  S  V  M  G  V  P  Q  I  S  A  L  P  R  S  F  S  V  N  S  S  V  S  S  S  R  D  E  D  F  R  E  L  V  R  I  A  S  R  K  S  L  V  N  K  M  E  T  E  L  L  R  Q  K  S  I  A  S  K  N  V  D  A  V  P  R  S  R  S  V  A  I  G  R  I  D  E  D  K  P  C   </second_frame>
            <third_frame>   F  S  S  Y  Q  S  F  F  L  A  Y  L  Y  L  P  I  I  L  N  I  R  R  F  K  F  L  D  I  K  V  *  K  *  V  Q  T  R  E  A  K  R  V  D  S  R  G  A  *  K  H  Q  L  E  F  *  L  K  Q  E  T  V  T  S  I  A  *  W  I  V  L  E  K  L  G  M  A  V  L  W  V  F  H  K  S  L  L  Y  R  E  V  S  V  S  I  H  L  Y  L  V  A  G  T  K  I  S  G  S  W  C  E  L  L  P  E  K  V  W  *  T  K  W  K  Q  S  F  *  D  K  N  Q  L  L  V  K  M  L  M  R  C  H  G  V  D  L  L  Q  L  E  E  S  M  K  I  S  H  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030E13.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89781" stop="89314"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFFLSVLFSCISVFANNTQHSTIQILGYQSLKMSTNKGSKESRLTRCIKAPIRVLIKARDCYVHSLMDCSGKIGYGSVMGVPQISALPRSFSVNSSVSSSRDEDFRELVRIASRKSLVNKMETELLRQKSIASKNVDAVPRSRSVAIGRIDEDKPC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="99450" PGL_stop="103574"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99450" e_stop="100143"/>
            <exon e_start="101124" e_stop="101314"/>
            <exon e_start="102689" e_stop="103574"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99450" e_stop="100143" e_length="694"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.963">
            <gDNA_intron_boundary i_start="100144" i_stop="101123" i_length="980"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101124" e_stop="101314" e_length="191"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="101315" i_stop="102688" i_length="1374"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="102689" e_stop="103574" e_length="886"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99450" stop="100055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99455" stop="99825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99779" stop="100143"/>
              <exon start="101124" stop="101314"/>
              <exon start="102689" stop="103008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99917" stop="100143"/>
              <exon start="101124" stop="101314"/>
              <exon start="102689" stop="103156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99994" stop="100143"/>
              <exon start="101124" stop="101314"/>
              <exon start="102689" stop="103170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538091" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99994" stop="100143"/>
              <exon start="101124" stop="101314"/>
              <exon start="102689" stop="103129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99995" stop="100143"/>
              <exon start="101124" stop="101314"/>
              <exon start="102689" stop="102882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100023" stop="100143"/>
              <exon start="101124" stop="101314"/>
              <exon start="102689" stop="102938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102804" stop="103500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102860" stop="103530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103227" stop="103574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103231" stop="103574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103232" stop="103574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335870" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAGCTCATATTTGCTTGTCGATTGCGAAGTTCCCAACTGTCTTAGCCAAATTAGTCTTCGCCGGTGAACTGTGAAACCTCCATCTAACAATGTCCTGGTTTGCTCGATCTATTGCCAGCACTCTCAGACTTGAAGACGACGACGATGACAGAGACGACGCCGTGTCAAGCAATCACGATCACTCTACTGGCAAACCTACTACGGAGAAGCAACAGAAAGATGAGGATGATTCATTGCCAGTATCACCGTCACGCGGCGTTAAGGATGACTTCTCAGAGCTCACTAAAACCCTAACCCGTCAGTTTTGGGGAGTGGCCTCTTTCCTGGCCCCACCGTCCCAATCCGAGCCCGACAAATCTTTACTGGATCCGACTTCAGAACCAGCTCGAGATTCGGATGACGAGGAGTCCGATTCTGCGGGGATCGCGGGTTTGCGGAGTGATATTGCTGAAATTGGGGGGAGATTCAAGAGTGGGATATCTAAGCTTTCGAAGAATATTCCCGTGTCGGAAATCACCAAAATGGCGTCCAACTTACTGCAACTGGGACCGGAGGAGGAAGAAGATAAGAGGTTTGATTCAGGTAGAGGTGCAGTTGGTGTTACTGAGGAAGTAGTGGCTTTTGTGAGGGACATTGCTATGCATCCTGAGACATGGTTGGATTTCCCTTTGTTCGAGGATGAAGATGACGAAG : TAGATTTTGACTTGTCTGATGCACAACAAGAGCATGCATTAGCTGTTGAGCGTTTTGCTCCAAGACTGGCTGCTTTGAGGATTGAGCTCTGCCCAGGCTACATGAATGAGGCTCGCTTTTGGGAGATTTACTTTGTTCTTCTGCACCCTAGACTGAATAAACAAGATGCTGAACTTCTATCCACACCCCAG : GTATTCAATGCCAGGGCCTCATTATCGCAAGAGTTACAAAAACGAACCAAGCCAATAGAAGGAGATTGGTCAAAGGAGGAGACTTTTAAATCAACTGACGGGGGTGGTTCTCAACATGAGGAGATGCTTACTGTCCCTTCTGCTCCGCTCTCCGCGGATGCGGTTCAAGACATGTCTAGTGTGGATGTTTCCTCTTTATCTGTAGTGGTCGGCTCTGGTACCGATGTGCACCCTGTCATTAGTGAAAATCAAACAGTTGATAGACTTGTGGCTGAAGAAGGACCTATTACCCTAAGCAAAGATGAAAAATTGCAATCTGCATCAGCGACTAAGTTAGAGGAGAGTGACGAAGAGGATGCTGATGATTGGTTGAAGGAAGAAAACACGGAAATTACAGGTACCAGTAAAACCACCATGTCTTTTGAGGATGATGAGGATGTGTCTTTCAGTGATCTTGAAGAGGATGATTCAGATATGCCTGCAAAATCAAAAAACGCAGCTTACAGCTCTGATAAGGACTCACAAGATTGGGTCCAGTTGAGGAAAAGCTCCACCGACTTGTCTAGAGATTCCAGCTCCATCAATCAGATTAGTTCTGTTAAGGAAAATCCTGATAGCAAAGAATCAAATGATTGGCTGGATATTGATGACCTTGAGGTGGCGTGAACTTATGTAAGATTTAAATATAGTTGTTGTTCCGCTCATTTCTTGTGAATAGCTATTCCCCATCCTCCAGTCCGTACTCTCCGCTGAGAACTCCTTAACTGTATTGTTTGTACATAGAACGCCTAATGAAAGACAATCGGGTTGTAATATAGTGTTCATGATATTAATTGATGGTAGCTTCCTGCTTGTGTCACTACATGAGCATATATACTCGGAGAAG</gDNA_template>
            <first_frame> *  A  H  I  C  L  S  I  A  K  F  P  T  V  L  A  K  L  V  F  A  G  E  L  *  N  L  H  L  T  M  S  W  F  A  R  S  I  A  S  T  L  R  L  E  D  D  D  D  D  R  D  D  A  V  S  S  N  H  D  H  S  T  G  K  P  T  T  E  K  Q  Q  K  D  E  D  D  S  L  P  V  S  P  S  R  G  V  K  D  D  F  S  E  L  T  K  T  L  T  R  Q  F  W  G  V  A  S  F  L  A  P  P  S  Q  S  E  P  D  K  S  L  L  D  P  T  S  E  P  A  R  D  S  D  D  E  E  S  D  S  A  G  I  A  G  L  R  S  D  I  A  E  I  G  G  R  F  K  S  G  I  S  K  L  S  K  N  I  P  V  S  E  I  T  K  M  A  S  N  L  L  Q  L  G  P  E  E  E  E  D  K  R  F  D  S  G  R  G  A  V  G  V  T  E  E  V  V  A  F  V  R  D  I  A  M  H  P  E  T  W  L  D  F  P  L  F  E  D  E  D  D  E   : V  D  F  D  L  S  D  A  Q  Q  E  H  A  L  A  V  E  R  F  A  P  R  L  A  A  L  R  I  E  L  C  P  G  Y  M  N  E  A  R  F  W  E  I  Y  F  V  L  L  H  P  R  L  N  K  Q  D  A  E  L  L  S  T  P  Q  :  V  F  N  A  R  A  S  L  S  Q  E  L  Q  K  R  T  K  P  I  E  G  D  W  S  K  E  E  T  F  K  S  T  D  G  G  G  S  Q  H  E  E  M  L  T  V  P  S  A  P  L  S  A  D  A  V  Q  D  M  S  S  V  D  V  S  S  L  S  V  V  V  G  S  G  T  D  V  H  P  V  I  S  E  N  Q  T  V  D  R  L  V  A  E  E  G  P  I  T  L  S  K  D  E  K  L  Q  S  A  S  A  T  K  L  E  E  S  D  E  E  D  A  D  D  W  L  K  E  E  N  T  E  I  T  G  T  S  K  T  T  M  S  F  E  D  D  E  D  V  S  F  S  D  L  E  E  D  D  S  D  M  P  A  K  S  K  N  A  A  Y  S  S  D  K  D  S  Q  D  W  V  Q  L  R  K  S  S  T  D  L  S  R  D  S  S  S  I  N  Q  I  S  S  V  K  E  N  P  D  S  K  E  S  N  D  W  L  D  I  D  D  L  E  V  A  *  T  Y  V  R  F  K  Y  S  C  C  S  A  H  F  L  *  I  A  I  P  H  P  P  V  R  T  L  R  *  E  L  L  N  C  I  V  C  T  *  N  A  *  *  K  T  I  G  L  *  Y  S  V  H  D  I  N  *  W  *  L  P  A  C  V  T  T  *  A  Y  I  L  G  E  </first_frame>
            <second_frame>  E  L  I  F  A  C  R  L  R  S  S  Q  L  S  *  P  N  *  S  S  P  V  N  C  E  T  S  I  *  Q  C  P  G  L  L  D  L  L  P  A  L  S  D  L  K  T  T  T  M  T  E  T  T  P  C  Q  A  I  T  I  T  L  L  A  N  L  L  R  R  S  N  R  K  M  R  M  I  H  C  Q  Y  H  R  H  A  A  L  R  M  T  S  Q  S  S  L  K  P  *  P  V  S  F  G  E  W  P  L  S  W  P  H  R  P  N  P  S  P  T  N  L  Y  W  I  R  L  Q  N  Q  L  E  I  R  M  T  R  S  P  I  L  R  G  S  R  V  C  G  V  I  L  L  K  L  G  G  D  S  R  V  G  Y  L  S  F  R  R  I  F  P  C  R  K  S  P  K  W  R  P  T  Y  C  N  W  D  R  R  R  K  K  I  R  G  L  I  Q  V  E  V  Q  L  V  L  L  R  K  *  W  L  L  *  G  T  L  L  C  I  L  R  H  G  W  I  S  L  C  S  R  M  K  M  T  K  :  *  I  L  T  C  L  M  H  N  K  S  M  H  *  L  L  S  V  L  L  Q  D  W  L  L  *  G  L  S  S  A  Q  A  T  *  M  R  L  A  F  G  R  F  T  L  F  F  C  T  L  D  *  I  N  K  M  L  N  F  Y  P  H  P  R :   Y  S  M  P  G  P  H  Y  R  K  S  Y  K  N  E  P  S  Q  *  K  E  I  G  Q  R  R  R  L  L  N  Q  L  T  G  V  V  L  N  M  R  R  C  L  L  S  L  L  L  R  S  P  R  M  R  F  K  T  C  L  V  W  M  F  P  L  Y  L  *  W  S  A  L  V  P  M  C  T  L  S  L  V  K  I  K  Q  L  I  D  L  W  L  K  K  D  L  L  P  *  A  K  M  K  N  C  N  L  H  Q  R  L  S  *  R  R  V  T  K  R  M  L  M  I  G  *  R  K  K  T  R  K  L  Q  V  P  V  K  P  P  C  L  L  R  M  M  R  M  C  L  S  V  I  L  K  R  M  I  Q  I  C  L  Q  N  Q  K  T  Q  L  T  A  L  I  R  T  H  K  I  G  S  S  *  G  K  A  P  P  T  C  L  E  I  P  A  P  S  I  R  L  V  L  L  R  K  I  L  I  A  K  N  Q  M  I  G  W  I  L  M  T  L  R  W  R  E  L  M  *  D  L  N  I  V  V  V  P  L  I  S  C  E  *  L  F  P  I  L  Q  S  V  L  S  A  E  N  S  L  T  V  L  F  V  H  R  T  P  N  E  R  Q  S  G  C  N  I  V  F  M  I  L  I  D  G  S  F  L  L  V  S  L  H  E  H  I  Y  S  E  K </second_frame>
            <third_frame>   S  S  Y  L  L  V  D  C  E  V  P  N  C  L  S  Q  I  S  L  R  R  *  T  V  K  P  P  S  N  N  V  L  V  C  S  I  Y  C  Q  H  S  Q  T  *  R  R  R  R  *  Q  R  R  R  R  V  K  Q  S  R  S  L  Y  W  Q  T  Y  Y  G  E  A  T  E  R  *  G  *  F  I  A  S  I  T  V  T  R  R  *  G  *  L  L  R  A  H  *  N  P  N  P  S  V  L  G  S  G  L  F  P  G  P  T  V  P  I  R  A  R  Q  I  F  T  G  S  D  F  R  T  S  S  R  F  G  *  R  G  V  R  F  C  G  D  R  G  F  A  E  *  Y  C  *  N  W  G  E  I  Q  E  W  D  I  *  A  F  E  E  Y  S  R  V  G  N  H  Q  N  G  V  Q  L  T  A  T  G  T  G  G  G  R  R  *  E  V  *  F  R  *  R  C  S  W  C  Y  *  G  S  S  G  F  C  E  G  H  C  Y  A  S  *  D  M  V  G  F  P  F  V  R  G  *  R  *  R  S :   R  F  *  L  V  *  C  T  T  R  A  C  I  S  C  *  A  F  C  S  K  T  G  C  F  E  D  *  A  L  P  R  L  H  E  *  G  S  L  L  G  D  L  L  C  S  S  A  P  *  T  E  *  T  R  C  *  T  S  I  H  T  P   : G  I  Q  C  Q  G  L  I  I  A  R  V  T  K  T  N  Q  A  N  R  R  R  L  V  K  G  G  D  F  *  I  N  *  R  G  W  F  S  T  *  G  D  A  Y  C  P  F  C  S  A  L  R  G  C  G  S  R  H  V  *  C  G  C  F  L  F  I  C  S  G  R  L  W  Y  R  C  A  P  C  H  *  *  K  S  N  S  *  *  T  C  G  *  R  R  T  Y  Y  P  K  Q  R  *  K  I  A  I  C  I  S  D  *  V  R  G  E  *  R  R  G  C  *  *  L  V  E  G  R  K  H  G  N  Y  R  Y  Q  *  N  H  H  V  F  *  G  *  *  G  C  V  F  Q  *  S  *  R  G  *  F  R  Y  A  C  K  I  K  K  R  S  L  Q  L  *  *  G  L  T  R  L  G  P  V  E  E  K  L  H  R  L  V  *  R  F  Q  L  H  Q  S  D  *  F  C  *  G  K  S  *  *  Q  R  I  K  *  L  A  G  Y  *  *  P  *  G  G  V  N  L  C  K  I  *  I  *  L  L  F  R  S  F  L  V  N  S  Y  S  P  S  S  S  P  Y  S  P  L  R  T  P  *  L  Y  C  L  Y  I  E  R  L  M  K  D  N  R  V  V  I  *  C  S  *  Y  *  L  M  V  A  S  C  L  C  H  Y  M  S  I  Y  T  R  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030E13.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99525" stop="100143"/>
                    <exon start="101124" stop="101314"/>
                    <exon start="102689" stop="103354"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1473</number_coding_nucleotides>
                  <number_encoded_amino_acids>491</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLHLTMSWFARSIASTLRLEDDDDDRDDAVSSNHDHSTGKPTTEKQQKDEDDSLPVSPSRGVKDDFSELTKTLTRQFWGVASFLAPPSQSEPDKSLLDPTSEPARDSDDEESDSAGIAGLRSDIAEIGGRFKSGISKLSKNIPVSEITKMASNLLQLGPEEEEDKRFDSGRGAVGVTEEVVAFVRDIAMHPETWLDFPLFEDEDDEVDFDLSDAQQEHALAVERFAPRLAALRIELCPGYMNEARFWEIYFVLLHPRLNKQDAELLSTPQVFNARASLSQELQKRTKPIEGDWSKEETFKSTDGGGSQHEEMLTVPSAPLSADAVQDMSSVDVSSLSVVVGSGTDVHPVISENQTVDRLVAEEGPITLSKDEKLQSASATKLEESDEEDADDWLKEENTEITGTSKTTMSFEDDEDVSFSDLEEDDSDMPAKSKNAAYSSDKDSQDWVQLRKSSTDLSRDSSSINQISSVKENPDSKESNDWLDIDDLEVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="102684" e_stop="103574"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="102684" e_stop="103574" e_length="891"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102684" stop="103505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102804" stop="103500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102860" stop="103530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103227" stop="103574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103231" stop="103574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103232" stop="103574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335870" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCAGGTATTCAATGCCAGGGCCTCATTATCGCAAGAGTTACAAAAACGAACCAAGCCAATAGAAGGAGATTGGTCAAAGGAGGAGACTTTTAAATCAACTGACGGGGGTGGTTCTCAACATGAGGAGATGCTTACTGTCCCTTCTGCTCCGCTCTCCGCGGATGCGGTTCAAGACATGTCTAGTGTGGATGTTTCCTCTTTATCTGTAGTGGTCGGCTCTGGTACCGATGTGCACCCTGTCATTAGTGAAAATCAAACAGTTGATAGACTTGTGGCTGAAGAAGGACCTATTACCCTAAGCAAAGATGAAAAATTGCAATCTGCATCAGCGACTAAGTTAGAGGAGAGTGACGAAGAGGATGCTGATGATTGGTTGAAGGAAGAAAACACGGAAATTACAGGTACCAGTAAAACCACCATGTCTTTTGAGGATGATGAGGATGTGTCTTTCAGTGATCTTGAAGAGGATGATTCAGATATGCCTGCAAAATCAAAAAACGCAGCTTACAGCTCTGATAAGGACTCACAAGATTGGGTCCAGTTGAGGAAAAGCTCCACCGACTTGTCTAGAGATTCCAGCTCCATCAATCAGATTAGTTCTGTTAAGGAAAATCCTGATAGCAAAGAATCAAATGATTGGCTGGATATTGATGACCTTGAGGTGGCGTGAACTTATGTAAGATTTAAATATAGTTGTTGTTCCGCTCATTTCTTGTGAATAGCTATTCCCCATCCTCCAGTCCGTACTCTCCGCTGAGAACTCCTTAACTGTATTGTTTGTACATAGAACGCCTAATGAAAGACAATCGGGTTGTAATATAGTGTTCATGATATTAATTGATGGTAGCTTCCTGCTTGTGTCACTACATGAGCATATATACTCGGAGAAG</gDNA_template>
            <first_frame> C  R  Y  S  M  P  G  P  H  Y  R  K  S  Y  K  N  E  P  S  Q  *  K  E  I  G  Q  R  R  R  L  L  N  Q  L  T  G  V  V  L  N  M  R  R  C  L  L  S  L  L  L  R  S  P  R  M  R  F  K  T  C  L  V  W  M  F  P  L  Y  L  *  W  S  A  L  V  P  M  C  T  L  S  L  V  K  I  K  Q  L  I  D  L  W  L  K  K  D  L  L  P  *  A  K  M  K  N  C  N  L  H  Q  R  L  S  *  R  R  V  T  K  R  M  L  M  I  G  *  R  K  K  T  R  K  L  Q  V  P  V  K  P  P  C  L  L  R  M  M  R  M  C  L  S  V  I  L  K  R  M  I  Q  I  C  L  Q  N  Q  K  T  Q  L  T  A  L  I  R  T  H  K  I  G  S  S  *  G  K  A  P  P  T  C  L  E  I  P  A  P  S  I  R  L  V  L  L  R  K  I  L  I  A  K  N  Q  M  I  G  W  I  L  M  T  L  R  W  R  E  L  M  *  D  L  N  I  V  V  V  P  L  I  S  C  E  *  L  F  P  I  L  Q  S  V  L  S  A  E  N  S  L  T  V  L  F  V  H  R  T  P  N  E  R  Q  S  G  C  N  I  V  F  M  I  L  I  D  G  S  F  L  L  V  S  L  H  E  H  I  Y  S  E  K </first_frame>
            <second_frame>  A  G  I  Q  C  Q  G  L  I  I  A  R  V  T  K  T  N  Q  A  N  R  R  R  L  V  K  G  G  D  F  *  I  N  *  R  G  W  F  S  T  *  G  D  A  Y  C  P  F  C  S  A  L  R  G  C  G  S  R  H  V  *  C  G  C  F  L  F  I  C  S  G  R  L  W  Y  R  C  A  P  C  H  *  *  K  S  N  S  *  *  T  C  G  *  R  R  T  Y  Y  P  K  Q  R  *  K  I  A  I  C  I  S  D  *  V  R  G  E  *  R  R  G  C  *  *  L  V  E  G  R  K  H  G  N  Y  R  Y  Q  *  N  H  H  V  F  *  G  *  *  G  C  V  F  Q  *  S  *  R  G  *  F  R  Y  A  C  K  I  K  K  R  S  L  Q  L  *  *  G  L  T  R  L  G  P  V  E  E  K  L  H  R  L  V  *  R  F  Q  L  H  Q  S  D  *  F  C  *  G  K  S  *  *  Q  R  I  K  *  L  A  G  Y  *  *  P  *  G  G  V  N  L  C  K  I  *  I  *  L  L  F  R  S  F  L  V  N  S  Y  S  P  S  S  S  P  Y  S  P  L  R  T  P  *  L  Y  C  L  Y  I  E  R  L  M  K  D  N  R  V  V  I  *  C  S  *  Y  *  L  M  V  A  S  C  L  C  H  Y  M  S  I  Y  T  R  R   </second_frame>
            <third_frame>   Q  V  F  N  A  R  A  S  L  S  Q  E  L  Q  K  R  T  K  P  I  E  G  D  W  S  K  E  E  T  F  K  S  T  D  G  G  G  S  Q  H  E  E  M  L  T  V  P  S  A  P  L  S  A  D  A  V  Q  D  M  S  S  V  D  V  S  S  L  S  V  V  V  G  S  G  T  D  V  H  P  V  I  S  E  N  Q  T  V  D  R  L  V  A  E  E  G  P  I  T  L  S  K  D  E  K  L  Q  S  A  S  A  T  K  L  E  E  S  D  E  E  D  A  D  D  W  L  K  E  E  N  T  E  I  T  G  T  S  K  T  T  M  S  F  E  D  D  E  D  V  S  F  S  D  L  E  E  D  D  S  D  M  P  A  K  S  K  N  A  A  Y  S  S  D  K  D  S  Q  D  W  V  Q  L  R  K  S  S  T  D  L  S  R  D  S  S  S  I  N  Q  I  S  S  V  K  E  N  P  D  S  K  E  S  N  D  W  L  D  I  D  D  L  E  V  A  *  T  Y  V  R  F  K  Y  S  C  C  S  A  H  F  L  *  I  A  I  P  H  P  P  V  R  T  L  R  *  E  L  L  N  C  I  V  C  T  *  N  A  *  *  K  T  I  G  L  *  Y  S  V  H  D  I  N  *  W  *  L  P  A  C  V  T  T  *  A  Y  I  L  G  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030E13.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102686" stop="103354"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>666</number_coding_nucleotides>
                  <number_encoded_amino_acids>222</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QVFNARASLSQELQKRTKPIEGDWSKEETFKSTDGGGSQHEEMLTVPSAPLSADAVQDMSSVDVSSLSVVVGSGTDVHPVISENQTVDRLVAEEGPITLSKDEKLQSASATKLEESDEEDADDWLKEENTEITGTSKTTMSFEDDEDVSFSDLEEDDSDMPAKSKNAAYSSDKDSQDWVQLRKSSTDLSRDSSSINQISSVKENPDSKESNDWLDIDDLEVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="100083" e_stop="100143"/>
            <exon e_start="101127" e_stop="101314"/>
            <exon e_start="102689" e_stop="103574"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.630" e_score="0.967"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="100083" e_stop="100143" e_length="61"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.630">
            <gDNA_intron_boundary i_start="100144" i_stop="101126" i_length="983"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101127" e_stop="101314" e_length="188"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="101315" i_stop="102688" i_length="1374"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="102689" e_stop="103574" e_length="886"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100083" stop="100143"/>
              <exon start="101127" stop="101314"/>
              <exon start="102689" stop="103295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102804" stop="103500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102860" stop="103530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103227" stop="103574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103231" stop="103574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688141" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103232" stop="103574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335870" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTGCTATGCATCCTGAGACATGGTTGGATTTCCCTTTGTTCGAGGATGAAGATGACGAAG : ATTTTGACTTGTCTGATGCACAACAAGAGCATGCATTAGCTGTTGAGCGTTTTGCTCCAAGACTGGCTGCTTTGAGGATTGAGCTCTGCCCAGGCTACATGAATGAGGCTCGCTTTTGGGAGATTTACTTTGTTCTTCTGCACCCTAGACTGAATAAACAAGATGCTGAACTTCTATCCACACCCCAG : GTATTCAATGCCAGGGCCTCATTATCGCAAGAGTTACAAAAACGAACCAAGCCAATAGAAGGAGATTGGTCAAAGGAGGAGACTTTTAAATCAACTGACGGGGGTGGTTCTCAACATGAGGAGATGCTTACTGTCCCTTCTGCTCCGCTCTCCGCGGATGCGGTTCAAGACATGTCTAGTGTGGATGTTTCCTCTTTATCTGTAGTGGTCGGCTCTGGTACCGATGTGCACCCTGTCATTAGTGAAAATCAAACAGTTGATAGACTTGTGGCTGAAGAAGGACCTATTACCCTAAGCAAAGATGAAAAATTGCAATCTGCATCAGCGACTAAGTTAGAGGAGAGTGACGAAGAGGATGCTGATGATTGGTTGAAGGAAGAAAACACGGAAATTACAGGTACCAGTAAAACCACCATGTCTTTTGAGGATGATGAGGATGTGTCTTTCAGTGATCTTGAAGAGGATGATTCAGATATGCCTGCAAAATCAAAAAACGCAGCTTACAGCTCTGATAAGGACTCACAAGATTGGGTCCAGTTGAGGAAAAGCTCCACCGACTTGTCTAGAGATTCCAGCTCCATCAATCAGATTAGTTCTGTTAAGGAAAATCCTGATAGCAAAGAATCAAATGATTGGCTGGATATTGATGACCTTGAGGTGGCGTGAACTTATGTAAGATTTAAATATAGTTGTTGTTCCGCTCATTTCTTGTGAATAGCTATTCCCCATCCTCCAGTCCGTACTCTCCGCTGAGAACTCCTTAACTGTATTGTTTGTACATAGAACGCCTAATGAAAGACAATCGGGTTGTAATATAGTGTTCATGATATTAATTGATGGTAGCTTCCTGCTTGTGTCACTACATGAGCATATATACTCGGAGAAG</gDNA_template>
            <first_frame> I  A  M  H  P  E  T  W  L  D  F  P  L  F  E  D  E  D  D  E   : D  F  D  L  S  D  A  Q  Q  E  H  A  L  A  V  E  R  F  A  P  R  L  A  A  L  R  I  E  L  C  P  G  Y  M  N  E  A  R  F  W  E  I  Y  F  V  L  L  H  P  R  L  N  K  Q  D  A  E  L  L  S  T  P  Q  :  V  F  N  A  R  A  S  L  S  Q  E  L  Q  K  R  T  K  P  I  E  G  D  W  S  K  E  E  T  F  K  S  T  D  G  G  G  S  Q  H  E  E  M  L  T  V  P  S  A  P  L  S  A  D  A  V  Q  D  M  S  S  V  D  V  S  S  L  S  V  V  V  G  S  G  T  D  V  H  P  V  I  S  E  N  Q  T  V  D  R  L  V  A  E  E  G  P  I  T  L  S  K  D  E  K  L  Q  S  A  S  A  T  K  L  E  E  S  D  E  E  D  A  D  D  W  L  K  E  E  N  T  E  I  T  G  T  S  K  T  T  M  S  F  E  D  D  E  D  V  S  F  S  D  L  E  E  D  D  S  D  M  P  A  K  S  K  N  A  A  Y  S  S  D  K  D  S  Q  D  W  V  Q  L  R  K  S  S  T  D  L  S  R  D  S  S  S  I  N  Q  I  S  S  V  K  E  N  P  D  S  K  E  S  N  D  W  L  D  I  D  D  L  E  V  A  *  T  Y  V  R  F  K  Y  S  C  C  S  A  H  F  L  *  I  A  I  P  H  P  P  V  R  T  L  R  *  E  L  L  N  C  I  V  C  T  *  N  A  *  *  K  T  I  G  L  *  Y  S  V  H  D  I  N  *  W  *  L  P  A  C  V  T  T  *  A  Y  I  L  G  E  </first_frame>
            <second_frame>  L  L  C  I  L  R  H  G  W  I  S  L  C  S  R  M  K  M  T  K  :  I  L  T  C  L  M  H  N  K  S  M  H  *  L  L  S  V  L  L  Q  D  W  L  L  *  G  L  S  S  A  Q  A  T  *  M  R  L  A  F  G  R  F  T  L  F  F  C  T  L  D  *  I  N  K  M  L  N  F  Y  P  H  P  R :   Y  S  M  P  G  P  H  Y  R  K  S  Y  K  N  E  P  S  Q  *  K  E  I  G  Q  R  R  R  L  L  N  Q  L  T  G  V  V  L  N  M  R  R  C  L  L  S  L  L  L  R  S  P  R  M  R  F  K  T  C  L  V  W  M  F  P  L  Y  L  *  W  S  A  L  V  P  M  C  T  L  S  L  V  K  I  K  Q  L  I  D  L  W  L  K  K  D  L  L  P  *  A  K  M  K  N  C  N  L  H  Q  R  L  S  *  R  R  V  T  K  R  M  L  M  I  G  *  R  K  K  T  R  K  L  Q  V  P  V  K  P  P  C  L  L  R  M  M  R  M  C  L  S  V  I  L  K  R  M  I  Q  I  C  L  Q  N  Q  K  T  Q  L  T  A  L  I  R  T  H  K  I  G  S  S  *  G  K  A  P  P  T  C  L  E  I  P  A  P  S  I  R  L  V  L  L  R  K  I  L  I  A  K  N  Q  M  I  G  W  I  L  M  T  L  R  W  R  E  L  M  *  D  L  N  I  V  V  V  P  L  I  S  C  E  *  L  F  P  I  L  Q  S  V  L  S  A  E  N  S  L  T  V  L  F  V  H  R  T  P  N  E  R  Q  S  G  C  N  I  V  F  M  I  L  I  D  G  S  F  L  L  V  S  L  H  E  H  I  Y  S  E  K </second_frame>
            <third_frame>   C  Y  A  S  *  D  M  V  G  F  P  F  V  R  G  *  R  *  R  R :   F  *  L  V  *  C  T  T  R  A  C  I  S  C  *  A  F  C  S  K  T  G  C  F  E  D  *  A  L  P  R  L  H  E  *  G  S  L  L  G  D  L  L  C  S  S  A  P  *  T  E  *  T  R  C  *  T  S  I  H  T  P   : G  I  Q  C  Q  G  L  I  I  A  R  V  T  K  T  N  Q  A  N  R  R  R  L  V  K  G  G  D  F  *  I  N  *  R  G  W  F  S  T  *  G  D  A  Y  C  P  F  C  S  A  L  R  G  C  G  S  R  H  V  *  C  G  C  F  L  F  I  C  S  G  R  L  W  Y  R  C  A  P  C  H  *  *  K  S  N  S  *  *  T  C  G  *  R  R  T  Y  Y  P  K  Q  R  *  K  I  A  I  C  I  S  D  *  V  R  G  E  *  R  R  G  C  *  *  L  V  E  G  R  K  H  G  N  Y  R  Y  Q  *  N  H  H  V  F  *  G  *  *  G  C  V  F  Q  *  S  *  R  G  *  F  R  Y  A  C  K  I  K  K  R  S  L  Q  L  *  *  G  L  T  R  L  G  P  V  E  E  K  L  H  R  L  V  *  R  F  Q  L  H  Q  S  D  *  F  C  *  G  K  S  *  *  Q  R  I  K  *  L  A  G  Y  *  *  P  *  G  G  V  N  L  C  K  I  *  I  *  L  L  F  R  S  F  L  V  N  S  Y  S  P  S  S  S  P  Y  S  P  L  R  T  P  *  L  Y  C  L  Y  I  E  R  L  M  K  D  N  R  V  V  I  *  C  S  *  Y  *  L  M  V  A  S  C  L  C  H  Y  M  S  I  Y  T  R  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030E13.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100083" stop="100143"/>
                    <exon start="101127" stop="101314"/>
                    <exon start="102689" stop="103354"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>912</number_coding_nucleotides>
                  <number_encoded_amino_acids>304</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IAMHPETWLDFPLFEDEDDEDFDLSDAQQEHALAVERFAPRLAALRIELCPGYMNEARFWEIYFVLLHPRLNKQDAELLSTPQVFNARASLSQELQKRTKPIEGDWSKEETFKSTDGGGSQHEEMLTVPSAPLSADAVQDMSSVDVSSLSVVVGSGTDVHPVISENQTVDRLVAEEGPITLSKDEKLQSASATKLEESDEEDADDWLKEENTEITGTSKTTMSFEDDEDVSFSDLEEDDSDMPAKSKNAAYSSDKDSQDWVQLRKSSTDLSRDSSSINQISSVKENPDSKESNDWLDIDDLEVA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="99809" PGL_stop="99512"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99809" e_stop="99512"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="99809" e_stop="99512" e_length="298"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99809" stop="99512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280863" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATTTGTCGGGCTCGGATTGGGACGGTGGGGCCAGGAAAGAGGCCACTCCCCAAAACTGACGGGTTAGGGTTTTAGTGAGCTCTGAGAAGTCATCCTTAACGCCGCGTGACGGTGATACTGGCAATGAATCATCCTCATCTTTCTGTTGCTTCTCCGTAGTAGGTTTGCCAGTAGAGTGATCGTGATTGCTTGACACGGCGTCGTCTCTGTCATCGTCGTCGTCTTCAAGTCTGAGAGTGCTGGCAATAGATCGAGCAAACCAGGACATTGTTAGATGGAGGTTTCACAGTTCACCG</gDNA_template>
            <first_frame> R  F  V  G  L  G  L  G  R  W  G  Q  E  R  G  H  S  P  K  L  T  G  *  G  F  S  E  L  *  E  V  I  L  N  A  A  *  R  *  Y  W  Q  *  I  I  L  I  F  L  L  L  L  R  S  R  F  A  S  R  V  I  V  I  A  *  H  G  V  V  S  V  I  V  V  V  F  K  S  E  S  A  G  N  R  S  S  K  P  G  H  C  *  M  E  V  S  Q  F  T  </first_frame>
            <second_frame>  D  L  S  G  S  D  W  D  G  G  A  R  K  E  A  T  P  Q  N  *  R  V  R  V  L  V  S  S  E  K  S  S  L  T  P  R  D  G  D  T  G  N  E  S  S  S  S  F  C  C  F  S  V  V  G  L  P  V  E  *  S  *  L  L  D  T  A  S  S  L  S  S  S  S  S  S  S  L  R  V  L  A  I  D  R  A  N  Q  D  I  V  R  W  R  F  H  S  S  P </second_frame>
            <third_frame>   I  C  R  A  R  I  G  T  V  G  P  G  K  R  P  L  P  K  T  D  G  L  G  F  *  *  A  L  R  S  H  P  *  R  R  V  T  V  I  L  A  M  N  H  P  H  L  S  V  A  S  P  *  *  V  C  Q  *  S  D  R  D  C  L  T  R  R  R  L  C  H  R  R  R  L  Q  V  *  E  C  W  Q  *  I  E  Q  T  R  T  L  L  D  G  G  F  T  V  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0030E13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="-" PGL_start="103513" PGL_stop="102756"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103513" e_stop="102756"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="103513" e_stop="102756" e_length="758"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103513" stop="102756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554281" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGAACACTATATTACAACCCGATTGTCTTTCATTAGGCGTTCTATGTACAAACAATACAGTTAAGGAGTTCTCAGCGGAGAGTACGGACTGGAGGATGGGGAATAGCTATTCACAAGAAATGAGCGGAACAACAACTATATTTAAATCTTACATAAGTTCACGCCACCTCAAGGTCATCAATATCCAGCCAATCATTTGATTCTTTGCTATCAGGATTTTCCTTAACAGAACTAATCTGATTGATGGAGCTGGAATCTCTAGACAAGTCGGTGGAGCTTTTCCTCAACTGGACCCAATCTTGTGAGTCCTTATCAGAGCTGTAAGCTGCGTTTTTTGATTTTGCAGGCATATCTGAATCATCCTCTTCAAGATCACTGAAAGACACATCCTCATCATCCTCAAAAGACATGGTGGTTTTACTGGTACCTGTAATTTCCGTGTTTTCTTCCTTCAACCAATCATCAGCATCCTCTTCGTCACTCTCCTCTAACTTAGTCGCTGATGCAGATTGCAATTTTTCATCTTTGCTTAGGGTAATAGGTCCTTCTTCAGCCACAAGTCTATCAACTGTTTGATTTTCACTAATGACAGGGTGCACATCGGTACCAGAGCCGACCACTACAGATAAAGAGGAAACATCCACACTAGACATGTCTTGAACCGCATCCGCGGAGAGCGGAGCAGAAGGGACAGTAAGCATCTCCTCATGTTGAGAACCACCCCCGTCAGTTGATTTAAAAGTCTCCTCCTTTGACC</gDNA_template>
            <first_frame> M  N  T  I  L  Q  P  D  C  L  S  L  G  V  L  C  T  N  N  T  V  K  E  F  S  A  E  S  T  D  W  R  M  G  N  S  Y  S  Q  E  M  S  G  T  T  T  I  F  K  S  Y  I  S  S  R  H  L  K  V  I  N  I  Q  P  I  I  *  F  F  A  I  R  I  F  L  N  R  T  N  L  I  D  G  A  G  I  S  R  Q  V  G  G  A  F  P  Q  L  D  P  I  L  *  V  L  I  R  A  V  S  C  V  F  *  F  C  R  H  I  *  I  I  L  F  K  I  T  E  R  H  I  L  I  I  L  K  R  H  G  G  F  T  G  T  C  N  F  R  V  F  F  L  Q  P  I  I  S  I  L  F  V  T  L  L  *  L  S  R  *  C  R  L  Q  F  F  I  F  A  *  G  N  R  S  F  F  S  H  K  S  I  N  C  L  I  F  T  N  D  R  V  H  I  G  T  R  A  D  H  Y  R  *  R  G  N  I  H  T  R  H  V  L  N  R  I  R  G  E  R  S  R  R  D  S  K  H  L  L  M  L  R  T  T  P  V  S  *  F  K  S  L  L  L  *   </first_frame>
            <second_frame>  *  T  L  Y  Y  N  P  I  V  F  H  *  A  F  Y  V  Q  T  I  Q  L  R  S  S  Q  R  R  V  R  T  G  G  W  G  I  A  I  H  K  K  *  A  E  Q  Q  L  Y  L  N  L  T  *  V  H  A  T  S  R  S  S  I  S  S  Q  S  F  D  S  L  L  S  G  F  S  L  T  E  L  I  *  L  M  E  L  E  S  L  D  K  S  V  E  L  F  L  N  W  T  Q  S  C  E  S  L  S  E  L  *  A  A  F  F  D  F  A  G  I  S  E  S  S  S  S  R  S  L  K  D  T  S  S  S  S  S  K  D  M  V  V  L  L  V  P  V  I  S  V  F  S  S  F  N  Q  S  S  A  S  S  S  S  L  S  S  N  L  V  A  D  A  D  C  N  F  S  S  L  L  R  V  I  G  P  S  S  A  T  S  L  S  T  V  *  F  S  L  M  T  G  C  T  S  V  P  E  P  T  T  T  D  K  E  E  T  S  T  L  D  M  S  *  T  A  S  A  E  S  G  A  E  G  T  V  S  I  S  S  C  *  E  P  P  P  S  V  D  L  K  V  S  S  F  D  </second_frame>
            <third_frame>   E  H  Y  I  T  T  R  L  S  F  I  R  R  S  M  Y  K  Q  Y  S  *  G  V  L  S  G  E  Y  G  L  E  D  G  E  *  L  F  T  R  N  E  R  N  N  N  Y  I  *  I  L  H  K  F  T  P  P  Q  G  H  Q  Y  P  A  N  H  L  I  L  C  Y  Q  D  F  P  *  Q  N  *  S  D  *  W  S  W  N  L  *  T  S  R  W  S  F  S  S  T  G  P  N  L  V  S  P  Y  Q  S  C  K  L  R  F  L  I  L  Q  A  Y  L  N  H  P  L  Q  D  H  *  K  T  H  P  H  H  P  Q  K  T  W  W  F  Y  W  Y  L  *  F  P  C  F  L  P  S  T  N  H  Q  H  P  L  R  H  S  P  L  T  *  S  L  M  Q  I  A  I  F  H  L  C  L  G  *  *  V  L  L  Q  P  Q  V  Y  Q  L  F  D  F  H  *  *  Q  G  A  H  R  Y  Q  S  R  P  L  Q  I  K  R  K  H  P  H  *  T  C  L  E  P  H  P  R  R  A  E  Q  K  G  Q  *  A  S  P  H  V  E  N  H  P  R  Q  L  I  *  K  S  P  P  L  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030E13.1" strand="-"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103188" stop="102937"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AAFFDFAGISESSSSRSLKDTSSSSSKDMVVLLVPVISVFSSFNQSSASSSSLSSNLVADADCNFSSLLRVIGPSSATSLSTV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030E13.1" strand="-"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103513" stop="103313"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MNTILQPDCLSLGVLCTNNTVKEFSAESTDWRMGNSYSQEMSGTTTIFKSYISSRHLKVINIQPII*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="26" PGL_strand="-" PGL_start="107248" PGL_stop="103693"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107248" e_stop="107146"/>
            <exon e_start="106798" e_stop="106712"/>
            <exon e_start="106522" e_stop="106477"/>
            <exon e_start="105792" e_stop="105678"/>
            <exon e_start="105524" e_stop="105457"/>
            <exon e_start="105287" e_stop="104631"/>
            <exon e_start="104498" e_stop="104394"/>
            <exon e_start="104272" e_stop="103693"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.908" e_score="0.835"/>
          <exon-intron don_prob="0.999" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.944" e_score="0.996"/>
          <exon-intron don_prob="0.988" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.835">
            <gDNA_exon_boundary e_start="107248" e_stop="107146" e_length="103"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.908">
            <gDNA_intron_boundary i_start="107145" i_stop="106799" i_length="347"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="106798" e_stop="106712" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.947">
            <gDNA_intron_boundary i_start="106711" i_stop="106523" i_length="189"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="106522" e_stop="106477" e_length="46"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="106476" i_stop="105793" i_length="684"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="105792" e_stop="105678" e_length="115"/>
          </exon>
          <intron i_serial="4" don_prob="0.972" acc_prob="0.984">
            <gDNA_intron_boundary i_start="105677" i_stop="105525" i_length="153"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="105524" e_stop="105457" e_length="68"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="105456" i_stop="105288" i_length="169"/>
          </intron>
          <exon e_serial="6" e_score="0.996">
            <gDNA_exon_boundary e_start="105287" e_stop="104631" e_length="657"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.944">
            <gDNA_intron_boundary i_start="104630" i_stop="104499" i_length="132"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="104498" e_stop="104394" e_length="105"/>
          </exon>
          <intron i_serial="7" don_prob="0.988" acc_prob="0.995">
            <gDNA_intron_boundary i_start="104393" i_stop="104273" i_length="121"/>
          </intron>
          <exon e_serial="8" e_score="0.938">
            <gDNA_exon_boundary e_start="104272" e_stop="103693" e_length="580"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107248" stop="107146"/>
              <exon start="106798" stop="106712"/>
              <exon start="106522" stop="106477"/>
              <exon start="105792" stop="105678"/>
              <exon start="105524" stop="105465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107246" stop="107146"/>
              <exon start="106798" stop="106712"/>
              <exon start="106522" stop="106477"/>
              <exon start="105792" stop="105678"/>
              <exon start="105524" stop="105457"/>
              <exon start="105287" stop="104971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105172" stop="104631"/>
              <exon start="104498" stop="104394"/>
              <exon start="104272" stop="104107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104909" stop="104631"/>
              <exon start="104498" stop="104394"/>
              <exon start="104272" stop="104106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104743" stop="104631"/>
              <exon start="104498" stop="104394"/>
              <exon start="104272" stop="103693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104693" stop="104631"/>
              <exon start="104498" stop="104394"/>
              <exon start="104272" stop="103709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577109" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="26" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCTCCTAATCTCCCTTTATATATATATATATATATATATATCTGTTTTCTTTCATCAAAATCTGAATTTTACATTCAAATTTCAAGATTCCACCTTTCTCAG : AAAGCAAAAGCAAATGGAGATTTCTGTTTACAAACCCTATGGTGATCATGAATTTCAATCACTAATTGAAAGAATTCACCCTCCCAG : GGTGTGCATTGATAATGATACTTGCCGAAACTGTACTATTGTGAAG : GTTGATAGTGCGAACAAACATGGTATATTGCTGGAGATGGTCCAAGTTCTGACGGATCTGGACCTACTGATTCTAAGATCATACATATCCTCTGATGGTGGCTGGTTAATGGATG : TTTTCCACGTAACTGACCAACTTGGGAACAAAATCACTGACGAAAGCCTCATCCACTACATCGAACAG : GCTATTTGTGCAAGTAGAAGAGGGTCCAGGGAAGTCCAAACATGTGTTGGTAGAAATGTAAGGCCCAGGCATGTCTCAATGGAGCACACAGCTATGGAGATGACAGCAATAGATAGACCAGGGTTAATGTCCGAGATATCTGCTGTGCTGGCTGAGTTAGGATGCCATGTCTCTGGTGCCGTGGCATGGACACATAACAAGCGAGCAGCCTGCATTGTTTACATGGAAGATGATCTGAAGCATGGGCCAATCATGGACCCCTATAGAGTGGCACAAATACAGGCCCAGCTGGAGAATGTTGTTGAGGCCCACCATTATGAAGGGGAGCGACGGAGTGTGAGGTTGGCAGCCCCTGCAGCTAGCCAGACCCATACCGAAAGACGGCTTCATCAGTTGATGGCTGCTGACAGGGACTACGAACAATGTTGTTCCTGTGGTTATGACTCAAGTGGAGATGATGTAGCTCACAGGCAGAAGAAGGGATCTAATAGCACAGAAGTGAAGATAGAAAATTGCAAGGAGAGGGGCTACTCCATTGTTACTGTGAGGAGTATGGACAGACCCAAATTGCTATTTGACACTATCTGCACCTTGACAGACTTGCAATATGTCGTGTTCCATGCATCCATCAATTCTTTTGAATCCATTGCCATTCAG : GAATACTATGTGAGACACAAGAATGGATGGACTTTAGATTCAGAAAGTGAAAGACGGAAAATGATCCAAAATCTGATGGCTGCTACTGAGAGGAGAGTATCTCAT : GAATTGAGACTGGATGTTACTACTCAAAACAGGGTAGGACTGTTAGCAGATGTCACAAGAGTGTTTCGGGAGAACGGATTATCCATAAGCAGGACTGAGGTTGGGGTACAGGGAGAGCAAGCAGTTGGCACATTCTATGTAAAAGATACTTCAGGGCAAGATGTGACTTCAGAAACCTTGGAGGTAGTAAGACGAGAAATTGGAGGTACCGTCCTGGTGGCAAATAAATCCTCAGGGAGGCCATCTTCTCAACCAACAGATTTGTCAAATACAAGCCCTAGCAGTAGCAGTGGCAAGCAAGACAAGAAGCCTGGTTTCTCATTAGGAAGCATGTTCTGGTCTCAGCTTGAGTGGCTTTCCAGCAATTTCAGACCTATAAAATCCTAAGTGCTGATCTTGAAGACCCTACTGTGTTTAGGCCATGTTGATTGTAAATATTTAGCAACTTCCTTCTGTAAATAATTAGCAACCTCCGTCTGTAAATAATTAGCAACAGTGGTAAATAATGATAGACGCATGGTACAATGTACATTATCTTTGCAGAGTAAAACCATTGGAAGTTCCAAAATTAAATGGGTGG</gDNA_template>
            <first_frame> V  S  *  S  P  F  I  Y  I  Y  I  Y  I  Y  L  F  S  F  I  K  I  *  I  L  H  S  N  F  K  I  P  P  F  S   : E  S  K  S  K  W  R  F  L  F  T  N  P  M  V  I  M  N  F  N  H  *  L  K  E  F  T  L  P   : G  C  A  L  I  M  I  L  A  E  T  V  L  L  *  R :   L  I  V  R  T  N  M  V  Y  C  W  R  W  S  K  F  *  R  I  W  T  Y  *  F  *  D  H  T  Y  P  L  M  V  A  G  *  W  M  :  F  S  T  *  L  T  N  L  G  T  K  S  L  T  K  A  S  S  T  T  S  N  R :   L  F  V  Q  V  E  E  G  P  G  K  S  K  H  V  L  V  E  M  *  G  P  G  M  S  Q  W  S  T  Q  L  W  R  *  Q  Q  *  I  D  Q  G  *  C  P  R  Y  L  L  C  W  L  S  *  D  A  M  S  L  V  P  W  H  G  H  I  T  S  E  Q  P  A  L  F  T  W  K  M  I  *  S  M  G  Q  S  W  T  P  I  E  W  H  K  Y  R  P  S  W  R  M  L  L  R  P  T  I  M  K  G  S  D  G  V  *  G  W  Q  P  L  Q  L  A  R  P  I  P  K  D  G  F  I  S  *  W  L  L  T  G  T  T  N  N  V  V  P  V  V  M  T  Q  V  E  M  M  *  L  T  G  R  R  R  D  L  I  A  Q  K  *  R  *  K  I  A  R  R  G  A  T  P  L  L  L  *  G  V  W  T  D  P  N  C  Y  L  T  L  S  A  P  *  Q  T  C  N  M  S  C  S  M  H  P  S  I  L  L  N  P  L  P  F  R :   N  T  M  *  D  T  R  M  D  G  L  *  I  Q  K  V  K  D  G  K  *  S  K  I  *  W  L  L  L  R  G  E  Y  L  M :   N  *  D  W  M  L  L  L  K  T  G  *  D  C  *  Q  M  S  Q  E  C  F  G  R  T  D  Y  P  *  A  G  L  R  L  G  Y  R  E  S  K  Q  L  A  H  S  M  *  K  I  L  Q  G  K  M  *  L  Q  K  P  W  R  *  *  D  E  K  L  E  V  P  S  W  W  Q  I  N  P  Q  G  G  H  L  L  N  Q  Q  I  C  Q  I  Q  A  L  A  V  A  V  A  S  K  T  R  S  L  V  S  H  *  E  A  C  S  G  L  S  L  S  G  F  P  A  I  S  D  L  *  N  P  K  C  *  S  *  R  P  Y  C  V  *  A  M  L  I  V  N  I  *  Q  L  P  S  V  N  N  *  Q  P  P  S  V  N  N  *  Q  Q  W  *  I  M  I  D  A  W  Y  N  V  H  Y  L  C  R  V  K  P  L  E  V  P  K  L  N  G  W </first_frame>
            <second_frame>  S  P  N  L  P  L  Y  I  Y  I  Y  I  Y  I  C  F  L  S  S  K  S  E  F  Y  I  Q  I  S  R  F  H  L  S  Q  :  K  A  K  A  N  G  D  F  C  L  Q  T  L  W  *  S  *  I  S  I  T  N  *  K  N  S  P  S  Q  :  G  V  H  *  *  *  Y  L  P  K  L  Y  Y  C  E   : G  *  *  C  E  Q  T  W  Y  I  A  G  D  G  P  S  S  D  G  S  G  P  T  D  S  K  I  I  H  I  L  *  W  W  L  V  N  G  C :   F  P  R  N  *  P  T  W  E  Q  N  H  *  R  K  P  H  P  L  H  R  T   : G  Y  L  C  K  *  K  R  V  Q  G  S  P  N  M  C  W  *  K  C  K  A  Q  A  C  L  N  G  A  H  S  Y  G  D  D  S  N  R  *  T  R  V  N  V  R  D  I  C  C  A  G  *  V  R  M  P  C  L  W  C  R  G  M  D  T  *  Q  A  S  S  L  H  C  L  H  G  R  *  S  E  A  W  A  N  H  G  P  L  *  S  G  T  N  T  G  P  A  G  E  C  C  *  G  P  P  L  *  R  G  A  T  E  C  E  V  G  S  P  C  S  *  P  D  P  Y  R  K  T  A  S  S  V  D  G  C  *  Q  G  L  R  T  M  L  F  L  W  L  *  L  K  W  R  *  C  S  S  Q  A  E  E  G  I  *  *  H  R  S  E  D  R  K  L  Q  G  E  G  L  L  H  C  Y  C  E  E  Y  G  Q  T  Q  I  A  I  *  H  Y  L  H  L  D  R  L  A  I  C  R  V  P  C  I  H  Q  F  F  *  I  H  C  H  S   : G  I  L  C  E  T  Q  E  W  M  D  F  R  F  R  K  *  K  T  E  N  D  P  K  S  D  G  C  Y  *  E  E  S  I  S   : *  I  E  T  G  C  Y  Y  S  K  Q  G  R  T  V  S  R  C  H  K  S  V  S  G  E  R  I  I  H  K  Q  D  *  G  W  G  T  G  R  A  S  S  W  H  I  L  C  K  R  Y  F  R  A  R  C  D  F  R  N  L  G  G  S  K  T  R  N  W  R  Y  R  P  G  G  K  *  I  L  R  E  A  I  F  S  T  N  R  F  V  K  Y  K  P  *  Q  *  Q  W  Q  A  R  Q  E  A  W  F  L  I  R  K  H  V  L  V  S  A  *  V  A  F  Q  Q  F  Q  T  Y  K  I  L  S  A  D  L  E  D  P  T  V  F  R  P  C  *  L  *  I  F  S  N  F  L  L  *  I  I  S  N  L  R  L  *  I  I  S  N  S  G  K  *  *  *  T  H  G  T  M  Y  I  I  F  A  E  *  N  H  W  K  F  Q  N  *  M  G   </second_frame>
            <third_frame>   L  L  I  S  L  Y  I  Y  I  Y  I  Y  I  S  V  F  F  H  Q  N  L  N  F  T  F  K  F  Q  D  S  T  F  L  R :   K  Q  K  Q  M  E  I  S  V  Y  K  P  Y  G  D  H  E  F  Q  S  L  I  E  R  I  H  P  P  R :   V  C  I  D  N  D  T  C  R  N  C  T  I  V  K  :  V  D  S  A  N  K  H  G  I  L  L  E  M  V  Q  V  L  T  D  L  D  L  L  I  L  R  S  Y  I  S  S  D  G  G  W  L  M  D   : V  F  H  V  T  D  Q  L  G  N  K  I  T  D  E  S  L  I  H  Y  I  E  Q  :  A  I  C  A  S  R  R  G  S  R  E  V  Q  T  C  V  G  R  N  V  R  P  R  H  V  S  M  E  H  T  A  M  E  M  T  A  I  D  R  P  G  L  M  S  E  I  S  A  V  L  A  E  L  G  C  H  V  S  G  A  V  A  W  T  H  N  K  R  A  A  C  I  V  Y  M  E  D  D  L  K  H  G  P  I  M  D  P  Y  R  V  A  Q  I  Q  A  Q  L  E  N  V  V  E  A  H  H  Y  E  G  E  R  R  S  V  R  L  A  A  P  A  A  S  Q  T  H  T  E  R  R  L  H  Q  L  M  A  A  D  R  D  Y  E  Q  C  C  S  C  G  Y  D  S  S  G  D  D  V  A  H  R  Q  K  K  G  S  N  S  T  E  V  K  I  E  N  C  K  E  R  G  Y  S  I  V  T  V  R  S  M  D  R  P  K  L  L  F  D  T  I  C  T  L  T  D  L  Q  Y  V  V  F  H  A  S  I  N  S  F  E  S  I  A  I  Q  :  E  Y  Y  V  R  H  K  N  G  W  T  L  D  S  E  S  E  R  R  K  M  I  Q  N  L  M  A  A  T  E  R  R  V  S  H  :  E  L  R  L  D  V  T  T  Q  N  R  V  G  L  L  A  D  V  T  R  V  F  R  E  N  G  L  S  I  S  R  T  E  V  G  V  Q  G  E  Q  A  V  G  T  F  Y  V  K  D  T  S  G  Q  D  V  T  S  E  T  L  E  V  V  R  R  E  I  G  G  T  V  L  V  A  N  K  S  S  G  R  P  S  S  Q  P  T  D  L  S  N  T  S  P  S  S  S  S  G  K  Q  D  K  K  P  G  F  S  L  G  S  M  F  W  S  Q  L  E  W  L  S  S  N  F  R  P  I  K  S  *  V  L  I  L  K  T  L  L  C  L  G  H  V  D  C  K  Y  L  A  T  S  F  C  K  *  L  A  T  S  V  C  K  *  L  A  T  V  V  N  N  D  R  R  M  V  Q  C  T  L  S  L  Q  S  K  T  I  G  S  S  K  I  K  W  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0030E13.1" strand="-"/>
                <serials PGL_serial="26" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107246" stop="107146"/>
                    <exon start="106798" stop="106712"/>
                    <exon start="106522" stop="106477"/>
                    <exon start="105792" stop="105678"/>
                    <exon start="105524" stop="105457"/>
                    <exon start="105287" stop="104631"/>
                    <exon start="104498" stop="104394"/>
                    <exon start="104272" stop="103886"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1563</number_coding_nucleotides>
                  <number_encoded_amino_acids>521</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLISLYIYIYIYISVFFHQNLNFTFKFQDSTFLRKQKQMEISVYKPYGDHEFQSLIERIHPPRVCIDNDTCRNCTIVKVDSANKHGILLEMVQVLTDLDLLILRSYISSDGGWLMDVFHVTDQLGNKITDESLIHYIEQAICASRRGSREVQTCVGRNVRPRHVSMEHTAMEMTAIDRPGLMSEISAVLAELGCHVSGAVAWTHNKRAACIVYMEDDLKHGPIMDPYRVAQIQAQLENVVEAHHYEGERRSVRLAAPAASQTHTERRLHQLMAADRDYEQCCSCGYDSSGDDVAHRQKKGSNSTEVKIENCKERGYSIVTVRSMDRPKLLFDTICTLTDLQYVVFHASINSFESIAIQEYYVRHKNGWTLDSESERRKMIQNLMAATERRVSHELRLDVTTQNRVGLLADVTRVFRENGLSISRTEVGVQGEQAVGTFYVKDTSGQDVTSETLEVVRREIGGTVLVANKSSGRPSSQPTDLSNTSPSSSSGKQDKKPGFSLGSMFWSQLEWLSSNFRPIKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 265 chains have been computed
$ 
$ memory statistics:
$ 701744 bytes spliced alignments in total
$ 192 spliced alignments have been stored
$ 3654 bytes was the average size of a spliced alignment
$ 38328 bytes predicted gene locations in total
$ 26 predicted gene locations have been stored
$ 1474 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 291 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:21:43
-->
