<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:30:14"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582810" ref_strand="+" ref_description="SGN-U582810 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|5732076|gb|AAD48975.1|AF162444_7 (e_value=4e-74) contains; (*ATH) AT4G05020.1 (e_value=7e-75)  Symbol: None | NADH dehydrogenase-related, similar to alternative NADH-dehydrogenase (Yarrowia lipolytica) GI:3718005, 64 kDa mitochondrial NADH dehydrogenase (Neurospora crassa) GI:4753821; contains Pfam profile PF00070: Pyridine nucleotide-disulph... ; (*SWP) sp|P40215|NDH1_YEAST (e_value=2e-33) External NADH-ubiquinone oxidoreductase 1, mitochondrial OS=Saccharomyces cerevisiae GN=NDE1; ">
      <seq>agggaaaaaaaaaagaagcctcaaccacgttcccttcttctcattgattcttctccatcttcacgttctctttcaacaactcacaccacgttcgcaacagcaactctctcaggtgaagagaaggttgctaggtgagatcgcgtaagttgaacgcaaaatgcagagagtaacggtgattgagagattttctaaaactttccgtgataatccttccctttctaagctcctcattgttttcactgtcagtggtggaggtcttgtggcatactccgaggcaggaaaatcgaatgacaattcaaatgctggagcattggttgaggccaacaacagaaaaaagaaagttgttgtccttggaactggttgggctggaaccagtttcttgaagaatctgaaggatccttcatatgatgtccaagtaatatctccaagaaattactttgcattcacccctttgcttccaagtgttacatgtggcacggtagaaagtcgcagtgttgttgaaccaattcgtaacattatcagaaagagatatgcagaggcctattactgggaagctgaatgtatcaaaattgatccagaaaacaagaaggtatattgtcgatcaaatctaagcaccaacggaaatgggaaggaagagtttgcagtagattatgactatcttgtcattgccactggagcccgtgtaaatacatttcacattcctggtgttgaagagacacccttcttctgaaggaagtagaagatgctcaaaagatccgtagaactgttattgactgttttgagaagcaagtctgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="14659" stop="17846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14959" g_stop="15070" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15071" i_stop="15221" i_length="151">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15222" g_stop="15355" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="246" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15356" i_stop="16594" i_length="1239">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16595" g_stop="16874" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="526" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16875" i_stop="17132" i_length="258">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17133" g_stop="17339" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="732" r_length="206" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17340" i_stop="17481" i_length="142">
            <donor d_prob="0.993" d_score="0.88"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17482" g_stop="17546" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="733" r_stop="796" r_length="64" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-U582810" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U582810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14959" e_stop="15070"/>
          <exon e_start="15222" e_stop="15355"/>
          <exon e_start="16595" e_stop="16874"/>
          <exon e_start="17133" e_stop="17339"/>
          <exon e_start="17482" e_stop="17546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGAAAAAAAAAAGAAGCCTCAACCACGTTCCCTTCTTCTCATTGATTCTTCTCCATCTTCACGTTCTCTTTCAACAACTCACACCACGTTCGCAACAGCAACTCTCTCAGGTACATATTTTTTTTGATTATTTTGATTTCTATTGCTCCTGAAGTGAATTTAAGGTGATGTTTATGAAAATTTTGTAGCAGTAGTGGTTAAACTGTTTAAGTTTTTGAAGAATTAATGGATGTTTTTTTTTTGTTTAATTTCTATTTACAGGTGAAGAGAAGGTTGCTAGGTGAGATCGCGTAAGTTGAACGCAAAATGCAGAGAGTAACGGTGATTGAGAGATTTTCTAAAACTTTCCGTGATAATCCTTCCCTTTCTAAGCTCCTCATTGTTTTCACTGTCAGGTATCTCTTTCGTTAATTTTGGTATGGTTACACGTTTCAATTTGATGAATTACTAGTTTGTTTTATTTAGTTTTCTGATTTTTAGCTACTGTGAAAAAAAAATACATATAGATGCTTGTTGTTGATGATAGGAAAGCTATGTTGAATTTGTATGTGAAGGAATAAGGTGTTGGTTACTTATGACTCGCAGTTGTAGTATGATCAAGTAGTTTCTAGATATAACTATTTTCAGATCTGCTAACTAAAATTGTAAATGATCGCGATGTTGACGAAATGTTCTATCTGCTAAGGGCATTGATATTTTGTACAGTAATTCGATATGGTTCTACATATTAATTCTTATTTAATAGTTTTATACTCTACTATTTACTCATAATCGTATTACTGGGCATGGATTGCAGAGCAAGAATTCCTCCACCTTTGCTCTGTTTCTACTTCTAGTTTTCAGTTATTGATGATCGAATTAGAAGTAAGAATAGTCGTGCAATCCTAATTCCTATGTACAAGTTTAATGTAACTTAATTATGGGTTTAATTCAATAGTAAAAGCATTTTGAATCAGGATTGCTGGAAGATCAGATGATTAATACTTCATGATCAGGCTACAAAATGTTGTTGTCGTGTAGTTCTTTTCGTATGGGGAATGCTAAATGTTTTACCGTAGAGATCTTAAAGTCAAGATAAGAGACTTGTAAATCAAAGATGAATATAGGATATAGAGTGGGGAAGTGGCAGTGAAATGCAGATAGCTGAGAACTGAGGCTGCAAGGGTATATAAGATGAGATATATGCTAGGCTTAAGCTCCCTCCGTACCGTACTAAAATCAGTAAATATGGCATGTCTCTTTAGTACATCCATTTGAAATCCTTTAGTATAGAAGTGCTAAAAATTGCACTATTTGATTATTCTCTACTTATTTCACCTTATATATGAAATATTTCTAAGCATGTTTTCTTGTCATCTATGCTCGAGTAGAGAATATGTCTTTGGGAGCAATATGATGATGCAATTAGTGCATGTAGAGTAGAAAACTTCATTACTAGTGCTTCATAGGCGTGTTTCATTGTCATTGTTATTTCTTTTTGAACTTGGTATGGCTTCTTGTTTTTTCTCCCAAAAATCACCAAGGGGCGTTATTTTTTTCCATTCTACTACCTTCATGGATACTTTTCTACGCAGCCCATGATGTTATCTGTGCAGTGAGTTAGCTCTATTCTGACCCTTTCATATAAATGATAGTGGTGGAGGTCTTGTGGCATACTCCGAGGCAGGAAAATCGAATGACAATTCAAATGCTGGAGCATTGGTTGAGGCCAACAACAGAAAAAAGAAAGTTGTTGTCCTTGGAACTGGTTGGGCTGGAACCAGTTTCTTGAAGAATCTGAAGGATCCTTCATATGATGTCCAAGTAATATCTCCAAGAAATTACTTTGCATTCACCCCTTTGCTTCCAAGTGTTACATGTGGCACGGTAGAAAGTCGCAGTGTTGTTGAACCAATTCGTAACATTATCAGAAAGGTTGGAAACAGTAATTTTTTTATTATAGCATTTTGTTTGTTTCATTTTGATTCTTCAATAAAAAGCCTATATAAGCACCTTCACATAATTGTTCCATTGGATAAACCCACACTGAAGCACAATTTATTCATTCAACCATGCGGACATTCTACAAATATAATTATTCCATTCGACTTTTCTATCCATATTATGATTATTAAGGCTAAGTTACTGAAATATCACGTTTCCTCTGATATTAAGTTTACATCCTCCTTGCAGAGATATGCAGAGGCCTATTACTGGGAAGCTGAATGTATCAAAATTGATCCAGAAAACAAGAAGGTATATTGTCGATCAAATCTAAGCACCAACGGAAATGGGAAGGAAGAGTTTGCAGTAGATTATGACTATCTTGTCATTGCCACTGGAGCCCGTGTAAATACATTCAACATTCCTGGTGTTGAAGAGAACACCTTCTTCTTGAAGGTAATCCCCGTTATACCATCTGCAAGTTTGTGATACCAAAAGATTAGGAGTTCGACATAATTTATTTAAGATTAGCTTGGTGACACATTTAGCTCATGCAATACATTGGTCTTGACATTTACATTGGATGCTGTTTGTTCAGGAAGTAGAAGATGCTCAAAAGATCCGTAGAACTGTTATTGACTGTTTTGAGAAAGCAAGTCTGCC</genome_strand>
        <mrna_strand>AGGGAAAAAAAAAAGAAGCCTCAACCACGTTCCCTTCTTCTCATTGATTCTTCTCCATCTTCACGTTCTCTTTCAACAACTCACACCACGTTCGCAACAGCAACTCTCTCAG.......................................................................................................................................................GTGAAGAGAAGGTTGCTAGGTGAGATCGCGTAAGTTGAACGCAAAATGCAGAGAGTAACGGTGATTGAGAGATTTTCTAAAACTTTCCGTGATAATCCTTCCCTTTCTAAGCTCCTCATTGTTTTCACTGTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGGAGGTCTTGTGGCATACTCCGAGGCAGGAAAATCGAATGACAATTCAAATGCTGGAGCATTGGTTGAGGCCAACAACAGAAAAAAGAAAGTTGTTGTCCTTGGAACTGGTTGGGCTGGAACCAGTTTCTTGAAGAATCTGAAGGATCCTTCATATGATGTCCAAGTAATATCTCCAAGAAATTACTTTGCATTCACCCCTTTGCTTCCAAGTGTTACATGTGGCACGGTAGAAAGTCGCAGTGTTGTTGAACCAATTCGTAACATTATCAGAAAG..................................................................................................................................................................................................................................................................AGATATGCAGAGGCCTATTACTGGGAAGCTGAATGTATCAAAATTGATCCAGAAAACAAGAAGGTATATTGTCGATCAAATCTAAGCACCAACGGAAATGGGAAGGAAGAGTTTGCAGTAGATTATGACTATCTTGTCATTGCCACTGGAGCCCGTGTAAATACATTTCACATTCCTGGTGTTGAAGAGACACCCTTCTTC-TGAAG..............................................................................................................................................GAAGTAGAAGATGCTCAAAAGATCCGTAGAACTGTTATTGACTGTTTTGAG-AAGCAAGTCTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U576144" ref_strand="+" ref_description="SGN-U576144 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|157327894|emb|CAO16606.1| (e_value=4e-166) unnamed; (*ATH) AT4G21490.1 (e_value=3e-155)  Symbol: None | pyridine nucleotide-disulphide oxidoreductase family protein, similar to GI:3718005 alternative NADH-dehydrogenase {Yarrowia lipolytica}; contains Pfam profile PF00070: Pyridine nucleotide-disulphide oxidoreductase | chr4:11436507-114... ; (*SWP) sp|P32340|NDI1_YEAST (e_value=1e-15) Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial OS=Saccharomyces cerevisiae GN=NDI1; ">
      <seq>tgctgtaccctaaggtcaaagatctggtgaagataacacttcttgaggcaacagatcatattttgaacatgtttgacaaaagaattactgcttttgctgaagaaaaattccacagagatggtattgatgtgaaaacagggtcaatggttgtgaaggtaggagaaaaagaaatttctaccaaggatgttaagcgtggagaaataacttctatgccttatggaatggctgtctggtctactggtattggaactcgtccagtaattatggagtttatgaagcacattggtcagggaagcagacgagtgttagcaaccgatgagtggctgcgtgttgagggacaggagaacgtatatgcacttggtgactgtgcaacaatcaaccagcgcaaagtcatggaagatattgctgctatatttcaaaaagcagacaaagataactctggaacacttacagtcaaagaatttcaggaagtccttaatgacatatgtgaaagatacccgcaggtggagctttacttgaaaaataaaaaaatgagtaatcttgtcgatctcttgaaagaatcgaaaggtaatggtgttaaagagtcgattgaggtggacattgaagaatttaaatctgctctgtcccaagtggatactgatatgaagaatcttccagcaacagctcaggttgcatctcagcaaggtgtctacttagctaaatgctttaatcgtatggaggaatgtgaaaaaaatccggaaggtcctcttcggtttagaggagaaggccgccatcgctttcacccattcaggtaccgacatttgggacagtttgcacctttgggaggagagcaaacagcagcacaacttccaggagattgggtttcaattggtcatagcagtcagtggctatggtattctgtgtatgctagcaaacaagtcagttggcgtacaagggcattggttgtctctgactgggtaagacggttcatatttggaagagactcgagccagatttaaggtgttacgccccagtggatttatcttgaaattccattaggctgttaccaaaagttttttgatgtgaatcctaacggatttgtttgtttaattcttttaccaaacaacttggcattggtcgtttgtgggtttcctgccatcacaattttgcagctacacgaacatagagaacccaattttctataattgcatcataataaaggtgaaatgaacatctataggagggatgttaaattgtaatttgaattattccatatattgctcaggtgttctattttgaataacatccggctaagccttttaatgtcacaatgttcaatggagtataagttttggtatttttcggtgaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="17364" stop="21223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17663" g_stop="17732" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17733" i_stop="18636" i_length="904">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18637" g_stop="18856" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="290" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18857" i_stop="18949" i_length="93">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18950" g_stop="19054" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="395" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19055" i_stop="19484" i_length="430">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19485" g_stop="19757" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="668" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19758" i_stop="19856" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19857" g_stop="19978" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="790" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19979" i_stop="20263" i_length="285">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20264" g_stop="20383" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="791" r_stop="910" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20384" i_stop="20476" i_length="93">
            <donor d_prob="0.872" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20477" g_stop="20909" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="911" r_stop="1344" r_length="434" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1347" polyA_stop="1367"/>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-U576144" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1343</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U576144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17663" e_stop="17732"/>
          <exon e_start="18637" e_stop="18856"/>
          <exon e_start="18950" e_stop="19054"/>
          <exon e_start="19485" e_stop="19757"/>
          <exon e_start="19857" e_stop="19978"/>
          <exon e_start="20264" e_stop="20383"/>
          <exon e_start="20477" e_stop="20909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTGTACCCTAAGGTCAAAGATCTGGTGAAGATAACACTTCTTGAGGCAACAGATCATATTTTGAACATGTAAGACCACACTTCTTTTAAGCATTCCTCTAAAGGATATTTCATATGCATGCTCATACATCATTACTTGAACTACCACCTACTGGAACTTGGAAATATATAGTAGTATATACGTTTACTATCCCGTAAATAGAAGTTCTGGTGGAGTAATACCTCTTTGAGATGCAAGTTTAAGGATGTGATAGAAGTGATTCTTCATGTTTGGCTTTCCAATGATGCCTAGTGATGGATGTTGTCTTCTCTACAGTTTCAGTTTCTGGCTCTTGATTGAGCTTATTGTAAATACAGACTTTGAACCCAAAGGATAGTTTCTTCTCTCGACATTAGGATGTGATACCTGGCATAGGACATTATGCTGTTGAAAGACACGCCAAGCAAAGGACATTTTGGCTGCTAGCCCTTGTTTAACAGTGCTGGGTTTATTGAAAATAATTTTCAGAATGAGCAAAACAGAAAATCATCCAGTTCTGTTCCTTTTCGTCTTCTCTTTTTTCTTTCTTTCTTTTATTTGGAGATAGGTGAAGTAAATCAGGCTGCTTCTCAGTGGTATGCCTTCAAAGAACTGACTAATAATGACATACTAAAATGGGTAATATAACTTTGTAAAGAGGTTGAAACAGAGCAGATTCACCATTTTATTCCAAAATCTAGTAGTTTATGCAGATCTTTTCAGTAGATGCCTTTTTGTTGTTTGGTAGTAAAAATTTTGCAAAAAAAATTGGTGATTTATTAGCTCAGAGACATCTAAAGTCGTAAGTGCTGCTATGTGATTGGTGATGCCTGAGCAGATTCAAGTATTTCTAGTTATACTGCAACCGTTTTAACTTGAGACATGCATCTTCTATTATGAGCTCATTTTTCAATATCACTTGTGTTCTGATATTAATCTGTTTATCATTTATAGGTTTGACAAAAGAATTACTGCTTTTGCTGAAGAAAAATTCCACAGAGATGGTATTGATGTGAAAACAGGGTCAATGGTTGTGAAGGTAGGAGAAAAAGAAATTTCTACCAAGGATGTTAAGCGTGGAGAAATAACTTCTATGCCTTATGGAATGGCTGTCTGGTCTACTGGTATTGGAACTCGTCCAGTAATTATGGAGTTTATGAAGCACATTGGTCAGGTATTTTGTCTTGTTTAGTGGAGCTAATTTAATGCCTCTGTCAAGCTTTTGTTGGTATTTTTGTCAGTTATATGTAATACTATTTGCTAACAGGGAAGCAGACGAGTGTTAGCAACCGATGAGTGGCTGCGTGTTGAGGGACAGGAGAACGTATATGCACTTGGTGACTGTGCAACAATCAACCAGCGCAAAGTCATGGTAATCTCACTCACTTCCTGATCACATTTCTTTCCTTGTACATATTGGGTAGTCATTCTATCCAGCATTCCACTAGAATGTGCTATTTGTGTTCATCTATTATGTTAACCAGTTTGAGTAGATAGTAACATTCAATTTCATCTTCTTTTTTCCCTTGATGGCAATACATTTGAAGCTTAGCTAGGAAATATATACAATCCACACTACACACCGGAATATTTCTCACTTTACTTCATTTGATTAAGAAGTGGTATGGAGCAGACAGTGATTTTCAGGGTACTTGTTTGATATTAGCAGTACTCTTTGGTTAATTAACATAGGGGACAGTCAGCTTCTGACAAAGTAGAACTTCTTTGAACTTTGAATTGACATTAGATATTAAATTGTGCAAATACTGATCTTTGTTTCACAAAATGTTCTCATTGTTCAGGAAGATATTGCTGCTATATTTCAAAAAGCAGACAAAGATAACTCTGGAACACTTACAGTCAAAGAATTTCAGGAAGTCCTTAATGACATATGTGAAAGATACCCGCAGGTGGAGCTTTACTTGAAAAATAAAAAAATGAGTAATCTTGTCGATCTCTTGAAAGAATCGAAAGGTAATGGTGTTAAAGAGTCGATTGAGGTGGACATTGAAGAATTTAAATCTGCTCTGTCCCAAGTGGATACTGATATGAAGAATCTTCCAGCAACAGCTCAGGTATTATGCAGACAAGATTACCTGTGTAGCTTCTATGTGTTTGTACTGGATGGACAAATGTTTAAATATCTTATGTCGTATGTGCAACGACTATTTCAGGTTGCATCTCAGCAAGGTGTCTACTTAGCTAAATGCTTTAATCGTATGGAGGAATGTGAAAAAAATCCGGAAGGTCCTCTTCGGTTTAGAGGAGAAGGCCGCCATCGCTTTCACCCATTCAGGTAGAAGTTGGATTTGTCTGATCATTTTGCACCATCTCTCTATGGGATCATGTTCCTCAGACCAACATGAATGAAGTGGGATAAAGTAACACAATTTTGCTAATGGTCTCATGCAGTATATTAATTTTTGAAACAAGTATGCTTAGAAAGCTTGTCTTGAGTATGCACACAATCATTAATGGGAAGGAAGTATAAACAGGATGAATGGGACAAAAGCTCTGGATTGTGATTTTGGCTTGAAAAAGTTTCTATATTTTTTAACAGCTGTTTAAATGCTTGTTCCAGGTACCGACATTTGGGACAGTTTGCACCTTTGGGAGGAGAGCAAACAGCAGCACAACTTCCAGGAGATTGGGTTTCAATTGGTCATAGCAGTCAGTGGCTATGGTATTCTGTGTATGCTAGGTAATTTATTCCAAGCTTCTGTCTTGTTGCTTCTCCATCAACCTTCATTTGATCTTTTGGATATATCTGATAACCATGTTTTTGATTCTCCAGCAAACAAGTCAGTTGGCGTACAAGGGCATTGGTTGTCTCTGACTGGGTAAGACGGTTCATATTTGGAAGAGACTCGAGCCAGATTTAAGGTGTTACGCCCCAGTGGATTTATCTTGAAATTCCATTAGGCTGTTACCAAAAGTTTTTTGATGTGAATCCTAACGGATTTGTTTGTTTAATTCTTTTACCAAACAACTTGGCATTGGTCGTTTGTGGGTTTCCTGCCATCACAATTTTGCAGCTACACGAACATAGAGAACCCAATTTTCTATAATTGCATCATAATAAAGGTGAAATGAACATCTATAGGAGGGATGTTAAATTGTAATTTGAATTATTCCATATATTGCTCAGGTGTTCTATTTTGAATAACATCCGGCTAAGCC-TTTAATGTCACAATGTTTAATGGAGTATAAGTTTTGGTATTTTTTGG</genome_strand>
        <mrna_strand>TGCTGTACCCTAAGGTCAAAGATCTGGTGAAGATAACACTTCTTGAGGCAACAGATCATATTTTGAACAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGACAAAAGAATTACTGCTTTTGCTGAAGAAAAATTCCACAGAGATGGTATTGATGTGAAAACAGGGTCAATGGTTGTGAAGGTAGGAGAAAAAGAAATTTCTACCAAGGATGTTAAGCGTGGAGAAATAACTTCTATGCCTTATGGAATGGCTGTCTGGTCTACTGGTATTGGAACTCGTCCAGTAATTATGGAGTTTATGAAGCACATTGGTCAG.............................................................................................GGAAGCAGACGAGTGTTAGCAACCGATGAGTGGCTGCGTGTTGAGGGACAGGAGAACGTATATGCACTTGGTGACTGTGCAACAATCAACCAGCGCAAAGTCATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATATTGCTGCTATATTTCAAAAAGCAGACAAAGATAACTCTGGAACACTTACAGTCAAAGAATTTCAGGAAGTCCTTAATGACATATGTGAAAGATACCCGCAGGTGGAGCTTTACTTGAAAAATAAAAAAATGAGTAATCTTGTCGATCTCTTGAAAGAATCGAAAGGTAATGGTGTTAAAGAGTCGATTGAGGTGGACATTGAAGAATTTAAATCTGCTCTGTCCCAAGTGGATACTGATATGAAGAATCTTCCAGCAACAGCTCAG...................................................................................................GTTGCATCTCAGCAAGGTGTCTACTTAGCTAAATGCTTTAATCGTATGGAGGAATGTGAAAAAAATCCGGAAGGTCCTCTTCGGTTTAGAGGAGAAGGCCGCCATCGCTTTCACCCATTCAG.............................................................................................................................................................................................................................................................................................GTACCGACATTTGGGACAGTTTGCACCTTTGGGAGGAGAGCAAACAGCAGCACAACTTCCAGGAGATTGGGTTTCAATTGGTCATAGCAGTCAGTGGCTATGGTATTCTGTGTATGCTAG.............................................................................................CAAACAAGTCAGTTGGCGTACAAGGGCATTGGTTGTCTCTGACTGGGTAAGACGGTTCATATTTGGAAGAGACTCGAGCCAGATTTAAGGTGTTACGCCCCAGTGGATTTATCTTGAAATTCCATTAGGCTGTTACCAAAAGTTTTTTGATGTGAATCCTAACGGATTTGTTTGTTTAATTCTTTTACCAAACAACTTGGCATTGGTCGTTTGTGGGTTTCCTGCCATCACAATTTTGCAGCTACACGAACATAGAGAACCCAATTTTCTATAATTGCATCATAATAAAGGTGAAATGAACATCTATAGGAGGGATGTTAAATTGTAATTTGAATTATTCCATATATTGCTCAGGTGTTCTATTTTGAATAACATCCGGCTAAGCCTTTTAATGTCACAATGTTCAATGGAGTATAAGTTTTGGTATTTTTCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575983" ref_strand="+" ref_description="SGN-U575983 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147827158|emb|CAN66468.1| (e_value=6e-68) hypothetical; (*ATH) AT3G62980.1 (e_value=1e-52) | Symbol: None | transport inhibitor response 1 (TIR1) (FBL1), E3 ubiquitin ligase SCF complex F-box subunit; identical to transport inhibitor response 1 GI:2352492 from (Arabidopsis thaliana) | chr3:23284091-23287350 REVERSE | Aliases: T20O10.80; (*SWP) sp|Q570C0|TIR1_ARATH (e_value=1e-51) Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana GN=TIR1; ">
      <seq>accactctcaagactgagttcagtttttcttgagatggaaatgaacccgagcttgaaaaaaccgagggaatctgtagatttatcgaaaatgtcggagttatctcagtcagcattcccagatgaggtgttggagaaggtgttgtctcttgttcagtctcataaagacagaaattcagcttcattggtgtgcaaagattggtataatgcagagcgttggacaagaactaagctgtttattggaaattgctattcagttactcctgagattgtagcaagaagatttcccaagattaagagtgttacccttaaggggaaaccaagattttctgactttaatttggtacctgagaattggggtgctgatattcaggcttggcttgatgtttttgccaaagtttacccctttcttgaggagttgagattgaaaagaatggctgttactgatgagagtttggagtttttggcaaaatcatttcttggatttaaggctctgtcattgttgagttgtgacggttttagcactgatgggatcggtagcattgctgctcactgcaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="35033" stop="36713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35333" g_stop="35350" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35351" i_stop="35875" i_length="525">
            <donor d_prob="0.812" d_score="0.00"/>
            <acceptor a_prob="0.883" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35876" g_stop="36408" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="551" r_length="533" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-U575983" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U575983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35333" e_stop="35350"/>
          <exon e_start="35876" e_stop="36408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACTCTCAAGACTGAGGTATGAAATAAAAATAAGAAGAAGAAAAAAGCCAACAGCTTTTTCAATTCGTGTTCAAATCCAGTTTGTTTTTTTCTCTTACAACTCACGCTTTTCTTCCTGTTTTTCTTGTAATTGTTCTGAAATTTTACTGATTCTTTTCCTCTTTTTCTTTTGTTTTTTTCTGTGTGTTAGATTGATATAAGCATGGTTTTTTCTGGCCCATTTCTTTTATCTGCTTTTTTTCAGTAGCATTTCAGAAATTTCTCAGCCTTTTTTCTCTTTTAGAGTTTAGACCCATCTCTCTTGCTCTGTTTTCTTGAAGCTCTAAATTGGAGTAGAAGAACTGATTGCAGATGATGTTTTCTTTTTGAAATTCAGGTGACTCAAGATGGTTTTTGTTTTTGTTTTTTACAAATCTTGAAAGCTAGTTTTTCTATGTTTATTCAACTGAGGGGGTTAAAGCTGGAATCTTGCTGTTGAAAATTTTGTCAGCATGTTGAAAAATAGGATAAAGATTTGAACTTTGAGTTGTTTTGATTTCAGTTCAGTTTTTCTTGAGATGGAAATGAATCCGAGCTTGAAAAAACCGAGGGAATCTGTAGATTTATCGAAAATGTCGGAGTTATCTCAGTCAGCATTCCCAGATGAGGTGTTGGAGAAGGTGTTGTCTCTTGTTCAGTCTCATAAAGACAGAAATTCAGCTTCATTGGTGTGCAAAGATTGGTATAATGCAGAGCGTTGGACAAGAACTAAGCTGTTTATTGGAAATTGCTATTCAGTTACTCCTGAGATTGTAGCAAGAAGATTTCCCAAGATTAAGAGTGTTACCCTTAAGGGGAAACCAAGATTTTCTGACTTTAATTTGGTACCTGAGAATTGGGGTGCTGATATTCAGGCTTGGCTTGATGTTTTTGCCAAAGTTTACCCCTTTCTTGAGGAGTTGAGATTGAAAAGAATGGCTGTTACTGATGAGAGTTTGGAGTTTTTGGCAAAATCATTTCTTGGATTTAAGGCTCTGTCATTGTTGAGTTGTGACGGTTTTAGCACTGATGGGATCGGTAGCATTGCTGCTCACT</genome_strand>
        <mrna_strand>ACCACTCTCAAGACTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGTTTTTCTTGAGATGGAAATGAACCCGAGCTTGAAAAAACCGAGGGAATCTGTAGATTTATCGAAAATGTCGGAGTTATCTCAGTCAGCATTCCCAGATGAGGTGTTGGAGAAGGTGTTGTCTCTTGTTCAGTCTCATAAAGACAGAAATTCAGCTTCATTGGTGTGCAAAGATTGGTATAATGCAGAGCGTTGGACAAGAACTAAGCTGTTTATTGGAAATTGCTATTCAGTTACTCCTGAGATTGTAGCAAGAAGATTTCCCAAGATTAAGAGTGTTACCCTTAAGGGGAAACCAAGATTTTCTGACTTTAATTTGGTACCTGAGAATTGGGGTGCTGATATTCAGGCTTGGCTTGATGTTTTTGCCAAAGTTTACCCCTTTCTTGAGGAGTTGAGATTGAAAAGAATGGCTGTTACTGATGAGAGTTTGGAGTTTTTGGCAAAATCATTTCTTGGATTTAAGGCTCTGTCATTGTTGAGTTGTGACGGTTTTAGCACTGATGGGATCGGTAGCATTGCTGCTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U580825" ref_strand="+" ref_description="SGN-U580825 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157327895|emb|CAO16607.1| (e_value=9e-83) unnamed; (*ATH) AT1G12820.1 (e_value=5e-60)  Symbol: None | transport inhibitor response protein, putative, E3 ubiquitin ligase SCF complex F-box subunit; similar to transport inhibitor response 1 GI:2352492 from (Arabidopsis thaliana) | chr1:4368548-4371291 REVERSE | Aliases: F13K23.7, F13K23... ; (*SWP) sp|Q9LPW7|AFB3_ARATH (e_value=4e-59) Protein AUXIN SIGNALING F-BOX 3 OS=Arabidopsis thaliana GN=AFB3; ">
      <seq>gcaatagtgcataactgccccaatttcacccattttcgtctctgtataatgagccctggccagccagattacttgacaaatgaacccatggatgaggcatttggtgcagtggtcaagacttgtaaaaagctccagaggctttctgtttctggacggttgactgacctgacctttgagtatattgggaagtatgccaaaaaccttgagacactttcagttgctttttctggcggcactgactggggtatgcagtgcgtgctcgacggctgttctaagctgaggaagctggagataagggattctccatttggaaatgcagcacttctttctggaatggggaagtatgaatcaatgcggtgtctttggatgtcagcttgcagggtcaccatgaatggttgtagaatacttgcacgagagagacctaggttgaatgtcgaggtaatcaaagatgagcacagcgatgactatgctgataaattatacgtctatcgttctgtagcagggccacgaagggatgccccaccttttgttgtaactctctagtacaaagtaacaggaacttcggtaagctccttcccttactctccctctgtcctatgctcgccaaaatagcgtggagtggatagatgatatgctgataatgcagagctttatttttatctgtaggcatgcactaggatacccttttatttcagctagttttatctgctacaacatgcatgatgttcgtaaaggtggacgagagaaagtaagtgaacaatggattaaaggaatatctctccttatgctgcatttactatgttttacttgaagaagcttgaaattttcaaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="38938" stop="40370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39237" g_stop="40070" g_length="834"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="834" r_length="834" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-U580825" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U580825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39237" e_stop="40070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATAGTGCATAACTGCCCCAATTTCACCCATTTTCGTCTCTGTATAATGAGCCCTGGCCAGCCAGATTACTTGACAAATGAACCCATGGATGAGGCATTTGGTGCAGTGGTCAAGACTTGTAAAAAGCTCCAGAGGCTTTCTGTTTCTGGACGGTTGACTGACCTGACCTTTGAGTATATTGGGAAGTATGCCAAAAACCTTGAGACACTTTCAGTTGCTTTTTCTGGCGGCACTGACTGGGGTATGCAGTGCGTGCTCGACGGCTGTTCTAAGCTGAGGAAGCTGGAGATAAGGGATTCTCCATTTGGAAATGCAGCACTTCTTTCTGGAATGGGGAAGTATGAATCAATGCGGTGTCTTTGGATGTCAGCTTGCAGGGTCACCATGAATGGTTGTAGAATACTTGCACGAGAGAGACCTAGGTTGAATGTCGAGGTAATCAAAGATGAGCACAGCGATGACTATGCTGATAAATTATACGTCTATCGTTCTGTAGCAGGGCCACGAAGGGATGCCCCACCTTTTGTTGTAACTCTCTAGTACAAAGTAACAGGAACTTCGGTAAGCTCCTTCCCTTACTCTCCCTCTGTCCTATGCTCGCCAAAATAGCGTGGAGTGGATAGATGATATGCTGATAATGCAGAGTTTTATTTTTATCTGTAGGCATGCACTAGGATACCCTTTTATTTCAGCTAGTTTTATCTGCTACAACATGCATGATGTTCGTAAAGGTGGACGAGAGAAAGTAAGTGAACAATGGATTAAAGGAATATCTCTCCTTATGCTGCATTTACTATGTTTTACTTGAAGAAGCTTGAAATTTTCAAGGAA</genome_strand>
        <mrna_strand>GCAATAGTGCATAACTGCCCCAATTTCACCCATTTTCGTCTCTGTATAATGAGCCCTGGCCAGCCAGATTACTTGACAAATGAACCCATGGATGAGGCATTTGGTGCAGTGGTCAAGACTTGTAAAAAGCTCCAGAGGCTTTCTGTTTCTGGACGGTTGACTGACCTGACCTTTGAGTATATTGGGAAGTATGCCAAAAACCTTGAGACACTTTCAGTTGCTTTTTCTGGCGGCACTGACTGGGGTATGCAGTGCGTGCTCGACGGCTGTTCTAAGCTGAGGAAGCTGGAGATAAGGGATTCTCCATTTGGAAATGCAGCACTTCTTTCTGGAATGGGGAAGTATGAATCAATGCGGTGTCTTTGGATGTCAGCTTGCAGGGTCACCATGAATGGTTGTAGAATACTTGCACGAGAGAGACCTAGGTTGAATGTCGAGGTAATCAAAGATGAGCACAGCGATGACTATGCTGATAAATTATACGTCTATCGTTCTGTAGCAGGGCCACGAAGGGATGCCCCACCTTTTGTTGTAACTCTCTAGTACAAAGTAACAGGAACTTCGGTAAGCTCCTTCCCTTACTCTCCCTCTGTCCTATGCTCGCCAAAATAGCGTGGAGTGGATAGATGATATGCTGATAATGCAGAGCTTTATTTTTATCTGTAGGCATGCACTAGGATACCCTTTTATTTCAGCTAGTTTTATCTGCTACAACATGCATGATGTTCGTAAAGGTGGACGAGAGAAAGTAAGTGAACAATGGATTAAAGGAATATCTCTCCTTATGCTGCATTTACTATGTTTTACTTGAAGAAGCTTGAAATTTTCAAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U566975" ref_strand="+" ref_description="SGN-U566975 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|157330408|emb|CAO46499.1| (e_value=1e-73) unnamed; (*ATH) AT1G61350.1 (e_value=2e-62) | Symbol: None | armadillo/beta-catenin repeat family protein, armadillo/beta-catenin-like repeats, Pfam:PF00514 | chr1:22637547-22639559 FORWARD | Aliases: T1F9.16, T1F9_16; ">
      <seq>catcccaaatctctatctaattcgccggaatcttcacttctccgaccacatctcgccggagaatggaattcagggaagacgaatgaaatccatcatgtctactctaccggaaaatgcagaaaatccagttgggtcatccgccggaaaatcaagaatccggcgagttaatgagttcatttcttcacttatatctctttcgtattcaatcaaagttttccctgtgaaatggcaatcgatacgaagcaagcttgaagagcttctttcgagtttatctgctattgagaattgtgattccacagaaaactaccctccactctgcagctcccttcaggccattacagctaccctcaagaattgccatgaactttctcggcattgtgttgagttttcttatagtgggaaactgctgatgcagagtgatcttgatatagtttctacaaaattagacaatcatataaagagtatttctgagatttactctcttggtttgcttactcaaagctctgccattattgttccaaagcccaatcttggagcttctcgtgatgatatcaagttttatattagggatttgttgtcaagggtcaagattgggtcttcagagatgaagaaacaagggttgattgctttgaatgaaattattcaagaagatgataggtatgttaaagttgcaattgaaattgataaccttgtttctgtgttagtgagttttcttgatttgcaagaagataatcttcaagaagaagcagctaaggcattatctgtaatagcagggtttcaatcttttagaagttgtttgatttctgctggaataatttcccctttgattagagttttggagtgtgggattgggttgagtaaagaattgccaccaggtgtttgcaaaagctcacagagaactcagataatgcatgggtcatttcagctcatggtggggttactgttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="48677" stop="50225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48977" g_stop="49925" g_length="949"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="948" r_length="948" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-U566975" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>949</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U566975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48977" e_stop="49925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCCAAATCTCTATCTAATTCGCCGGAATCTTCACTTCTCCGACCACATCTCGCCGGAGAATGGAATTCAGGGAAGACGAATGAAATCCATCATGTCTACTCTACCGGAAAATGCAGAAAATCCAGTTGGGTCATCCGCCGGAAAATCAAGAATCCGGCGAGTTAATGAGTTCATTTCTTCACTTATATCTCTTTCGTATTCAATCAAAGTTTTCCCTGTGAAATGGCAATCGATACGAAGCAAGCTTGAAGAGCTTCTTTCGAGTTTATCTGCTATTGAGAATTGTGATTCCACAGAAAACTACCCTCCACTCTGCAGCTCCCTTCAGGCCATTACAGCTACCCTCAAGAATTGCCATGAACTTTCTCGGCATTGTGTTGAGTTTTCTTATAGTGGGAAACTGCTGATGCAGAGTGATCTTGATATAGTTTCTACAAAATTAGACAATCATATAAAGAGTATTTCTGAGATTTACTCTCTTGGTTTGCTTACTCAAAGCTCTGCCATTATTGTTCCAAAGCCCAATCTTGGAGCTTCTCGTGATGATATCAAGTTTTATATTAGGGATTTGTTGTCAAGGGTCAAGATTGGGTCTTCAGAGATGAAGAAACAAGGGTTGATTGCTTTGAATGAAATTATTCAAGAAGATGATAGGTATGTTAAAGTTGCAATTGAAATTGATAACCTTGTTTCTGTGTTAGTGAGTTTTCTTGATTTGCAAGAAGATAATCTTCAAGAAGAAGCAGCTAAGGCATTATCTGTAATAGCAGGGTTTCAATCTTTTAGAAGTTGTTTGATTTCTGCTGGAATAATTTCCCCTTTGATTAGAGTTTTGGAGTGTGGGATTGGGTTGAGTAAAGAATTTGCCACCAGGTGTTTGCAAAAGCTCACAGAGAACTCAGATAATGCATGGTCAATTTCAGCTCATGGTGGGGTTACTGTTTTG</genome_strand>
        <mrna_strand>CATCCCAAATCTCTATCTAATTCGCCGGAATCTTCACTTCTCCGACCACATCTCGCCGGAGAATGGAATTCAGGGAAGACGAATGAAATCCATCATGTCTACTCTACCGGAAAATGCAGAAAATCCAGTTGGGTCATCCGCCGGAAAATCAAGAATCCGGCGAGTTAATGAGTTCATTTCTTCACTTATATCTCTTTCGTATTCAATCAAAGTTTTCCCTGTGAAATGGCAATCGATACGAAGCAAGCTTGAAGAGCTTCTTTCGAGTTTATCTGCTATTGAGAATTGTGATTCCACAGAAAACTACCCTCCACTCTGCAGCTCCCTTCAGGCCATTACAGCTACCCTCAAGAATTGCCATGAACTTTCTCGGCATTGTGTTGAGTTTTCTTATAGTGGGAAACTGCTGATGCAGAGTGATCTTGATATAGTTTCTACAAAATTAGACAATCATATAAAGAGTATTTCTGAGATTTACTCTCTTGGTTTGCTTACTCAAAGCTCTGCCATTATTGTTCCAAAGCCCAATCTTGGAGCTTCTCGTGATGATATCAAGTTTTATATTAGGGATTTGTTGTCAAGGGTCAAGATTGGGTCTTCAGAGATGAAGAAACAAGGGTTGATTGCTTTGAATGAAATTATTCAAGAAGATGATAGGTATGTTAAAGTTGCAATTGAAATTGATAACCTTGTTTCTGTGTTAGTGAGTTTTCTTGATTTGCAAGAAGATAATCTTCAAGAAGAAGCAGCTAAGGCATTATCTGTAATAGCAGGGTTTCAATCTTTTAGAAGTTGTTTGATTTCTGCTGGAATAATTTCCCCTTTGATTAGAGTTTTGGAGTGTGGGATTGGGTTGAGTAAAGAA-TTGCCACCAGGTGTTTGCAAAAGCTCACAGAGAACTCAGATAATGCATGGGTCATTTCAGCTCATGGTGGGGTTACTGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584960" ref_strand="+" ref_description="SGN-U584960 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|125533824|gb|EAY80372.1| (e_value=1e-24) hypothetical; (*ATH) AT1G11430.1 (e_value=7e-25) | Symbol: None | plastid developmental protein DAG, putative, similar to DAG protein, chloroplast precursor (Garden snapdragon) SWISS-PROT:Q38732 | chr1:3847250-3849162 FORWARD | Aliases: T23J18.10, T23J18_10; (*SWP) sp|Q38732|DAG_ANTMA (e_value=1e-24) DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG; ">
      <seq>gcttacgagggtagagtttattgagacttatgtgcagactgctgggaaggtcttcgggagtgtggaagaggctaanaaaaagatttatgccttaagcacaacaacttaccgaggttttcaggtcttgtgttcagaggacacatcgaagaagtttgaaggtctcccaggagttgtgtttgtactgcctgattcctatattgatccagtaaacaaggaatatggaggtgacaagtataataacggagaaatcattgagagaccacctcctccacagtttcaaagacaaggtagcaggcctcgaagaggcccacagtatcaacaaggcaattatcgccctcctcagcagaactatgggccagcacagggtcatccaccacagcagaattatggtgcagcacagggtcctccaccacagcagaattataacgcgccacagggtcctccaccccagcagaactatggcccaccaaggtatcctccaccgcaacagaactatggctcacgacagtatgctccgccacctcaacagaactacagacaaccacaggatctttctccacagcagaattatgagcggccacagaatcctcagccaaaccagagttacggtgtacctcagagtgttccttctcagtggaatcatggccttcagccaaaatttgtacctcaacagatctatgggcctcaaggggctggggatcataggggtcctgcacctcctgatagcaacctagatgcgtgggataattcccaggttggatggggtgattcaatacgttcaccttttcctcgaagagaccagagaggtggtgcacctccagagcaaggaggctttggaggagttcaacattatgggtctcaacaaggtggaagttctgaacaacaaacctttggagatcaaccactgagatatgggccccagtttgggcagaacaatccaaggccaggaggaaatcagaatttcccaccgatagagcagcagggcaacatgcaagggggggagcagaggacttatgcatctagtggtacaatgggaacagatcaagagagatactaaagatatggtgcagtatcatgacgtactgagaaaggattgttaattagcttttgactagctaaaggtgatggttcttgtctgaataattgagaaatgatcatgatcacatcctctagtctcaacaattaccaagaaacttgggctgaagaatgttgtggtaaatagttttccaatgtcttaatatggttatggaaatggggttttgtgaatgataacatggagagacttaggtgtaaaacaagcctcttgtatctgttttcttttgtgcaaggaagaaagtttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="-" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="56277" stop="52253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55977" g_stop="55918" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55917" i_stop="55243" i_length="675">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55242" g_stop="55145" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="158" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55144" i_stop="55060" i_length="85">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55059" g_stop="54994" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="224" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54993" i_stop="54884" i_length="110">
            <donor d_prob="0.827" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54883" g_stop="54063" g_length="821"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="1045" r_length="821" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54062" i_stop="52849" i_length="1214">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52848" g_stop="52553" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1046" r_stop="1341" r_length="296" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="-" ref_id="SGN-U584960" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1341</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U584960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55977" e_stop="55918"/>
          <exon e_start="55242" e_stop="55145"/>
          <exon e_start="55059" e_stop="54994"/>
          <exon e_start="54883" e_stop="54063"/>
          <exon e_start="52848" e_stop="52553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTACGAGGGAAGAGATGATTGAGACTTATGTGCAGACTGCTGCTAAGGTCTTCGGGAGGTGATTTCTATAACCTTTCCCTTAATTGTTTGATCTGTATTCAAAGTCCTTTAACATTTTATGCTTGATATTTGATATGTTCTTCCAATTGAAGAAGGAAAAGGAGATACTGACTTGGTATTAGTGGGTTAGAAAGCTGCAATCATTGGATGATGTAGTTATAATATCTTTGGTGAGCTGAGCTCGCCTTTTAGATAGATTAAATTGGCTTCGAACTGTATGTATTTTGATCATTTTCTATGATACGTCGTTGGTTCTGATGTCAGTTGTTAATATGCAGTCACTAAGACAGTAGAAGAAGTATTACCCCAAATCTTATCTATGATGCTACATAGGACTTGGAAGCTTTATGTTATCAGTTTATGGTGGATATGGGTACTGTCTAGTAGCTCTAAGTAGGTGTATACTTGATTCTGGTGCAATTTTTGGATCTTTCCTATTGTTTCCTGCATGGAAGTCCAGCATTATTATATTCTTTTGGGCATTCTGTGGTTTTCTAAGTGTTGTGATTTTGTGTCATCTACTGATAAGATAAATTATCTCTCTGTTTTGTCACCCATTGATATTGACTTTTACAACTTAATATGCACTTGTTATAGAATCAAGAGTGAGCTTCCTTTCATTGACCTAATACTTTGTTTCTTTGTGGCCTTTGTATTGTTTAACTAATTGCAGTGTGGAAGAGGCTAAGAAAAAGATTTATGCCTTAAGCACAACAACTTACCGAGGTTTTCAGGTCTTGTGTTCAGAGGACACATCGAAGAAGTTTGAAGGTGGGTGTAGATTATGTTGTATATTTCTTTCTGAGCAATGATAAATGCATTGTTTGTCTGATATAGAGGTTGTCTCTGCTATCAGGTCTCCCAGGAGTTGTGTTTGTACTGCCTGATTCCTATATTGATCCAGTAAACAAGGAATATGGAGGTCTGAATGTTATTTTTTATTAGCATTTCAAAACCATGGTTATGCTGTATATGATATAACTTGAATTTTGTTGTGGTTTCCTCCTGCTTCTATCGTGCTATTTACATCAGGTGACAAGTATAATAACGGAGAAATCATTGAGAGACCACCTCCTCCACAGTTTCAAAGACAAGGTAGCAGGCCTCGAAGAGGCCCACAGTATCAACAAGGCAATTATCGCCCTCCTCAGCAGAACTATGGGCCAGCACAGGGTCATCCACCACAGCAGAATTATGGTGCAGCACAGGGTCCTCCACCACAGCAGAATTATAACGCGCCACAGGGTCCTCCACCCCAGCAGAACTATGGCCCACCAAGGTATCCTCCACCGCAACAGAACTATGGCTCACGACAGTATGCTCCGCCACCTCAACAGAACTACAGACAACCACAGGATCTTTCTCCACAGCAGAATTATGAGCGGCCACAGAATCCTCAGCCAAACCAGAGTTACGGTGTACCTCAGAGTGTTCCTTCTCAGTGGAATCATGGCCTTCAGCCAAAATTTGTACCTCAACAGATCTATGGGCCTCAAGGGGCTGGGGATCATAGGGGTCCTGCACCTCCTGATAGCAACCTAGATGCGTGGGATAATTCCCAGGTTGGATGGGGTGATTCAATACGTTCACCTTTTCCTCGAAGAGACCAGAGAGGTGGTGCACCTCCAGAGCAAGGAGGCTTTGGAGGAGTTCAACATTATGGGTCTCAACAAGGTGGAAGTTCTGAACAACAAACCTTTGGAGATCAACCACTGAGATATGGGCCCCAGTTTGGGCAGAACAATCCAAGGCCAGGAGGAAATCAGAATTTCCCACCGATAGAGCAGCAGGGCAACATGCAAGGGGGGGAGCAGAGGACTTATGCATCTAGTGGTACAATGGGAACAGATCAAGTAAGCTGTTGCTTCCCTAACCCTCTTATGCGTTGTTTTACTGTTTATTTCTCTGTGAATGACATGATATGATGTATTTGTATTTAAGAGGGAGATAACTTGGAATATCCTCCCTCCAATTGTCTGTTTTCAACCATTACAACCTTTTAACTATGTGTGTCCTATAACTTTAAGTTGCTCGGAATTGGTTTTGGGTGTCCGATAGGGTGTCGATTTAGAAACAAATTTCTTTAAAGCGGACAACTTTTTTTTTTTGTGTGTGGAGGGGTGATTTTTATGTATATTTCCTATTTAAAATAACCAGAAAAGGTAATATCTATTATTTTATGAGTGGTTCGTGCACCACTTTCTCAGCTATTGTGGTTTTTGTCTTGTAAGGAGGTTAAAGAGCATTGTGGACAAGAGGGATTTAATAGGAACCCTACATAGTTGAGGTTCTAATGGGCGAAAACAGACTACTTTGGGGGTGGCGGCGGCGGGGATTTATGTATTTTCCCTGTTTAAAACCACCAAACAAGGTAATGTCTGTCAGATTCTTTAAAGGTTGATCAGAAAACAATGAGTTCCCAAACCAAAAAACTATTTTGCTGGTTCTCTATTATAGTAATGTCAACCATTTGAAAATTCAAATTTGAGTTACTAAAGACATTCAGAAGACAAAGTATTAATGATATTTATGTATGAAAGACTCAGTTTCAAAAAAAAAGAGAAGAGAATGATATATGTCTGAAAGACATATTCTATCCATAGATACAACAACTTAGATTGCTGATTCCTTTTTAGTTGTTAAAAAAAGTTGTTTCGCGTTTTCTCTTGCCAATATACTGATCTAGTAGTTTGACCAGCCAAAAGTTTGTCGTAGCATCAAAGTTATTCATTTTAGAGCACTTCTGTACATTCAATGGTTCTAGCTTTTTGAACTGGAATTTAATTAGGCTAACCCGGAAGGAAGGGGTCATACAAATTTTCTTGATCAAAAAATAAAAATCAAAACTACAGCACCAAAGTGATTGGCCATACACCCTAGAATTCTCTATTGGAATTTTTTTATTAGTAGAGATTTTTAAAATTGTTGGAATGCTCTTTTCTATATTCTGTAACAACTTGGTGACAGAAATACAATGCTTTCAATAACAACCTCTGCAGTTTATTCAAATGAGTCAACTTGCTATCTCTCCATTTGTTCAACACTTATTCTCTGTTAACGTCTGCAGGAGAGATACTAAAGATATGGTGCAGTATCATGACGTACTGAGAAAGGATTGTTAATTAGCTTTTGACTAGCTAAAGGTGATGGTTCTTGTCTGAATAATTGAGAAATGATCATGATCACATCCTCTAGTCTCAACAATTACCAAGAAACTTGGGCTGAAGAATGTTGTGGTAAATAGTTTTCCAATGTCTTAATATGGTTATGGAAATGGTGTTTTGTGAATGATAACATGGAGAGACTTAGGTGTAAAACAAGCCTCTTGTATCTGTTTCTTTTTGTGCAAGGAAGAAGGTTTCT</genome_strand>
        <mrna_strand>GCTTACGAGGGTAGAGTTTATTGAGACTTATGTGCAGACTGCTGGGAAGGTCTTCGGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGAAGAGGCTAANAAAAAGATTTATGCCTTAAGCACAACAACTTACCGAGGTTTTCAGGTCTTGTGTTCAGAGGACACATCGAAGAAGTTTGAAG.....................................................................................GTCTCCCAGGAGTTGTGTTTGTACTGCCTGATTCCTATATTGATCCAGTAAACAAGGAATATGGAG..............................................................................................................GTGACAAGTATAATAACGGAGAAATCATTGAGAGACCACCTCCTCCACAGTTTCAAAGACAAGGTAGCAGGCCTCGAAGAGGCCCACAGTATCAACAAGGCAATTATCGCCCTCCTCAGCAGAACTATGGGCCAGCACAGGGTCATCCACCACAGCAGAATTATGGTGCAGCACAGGGTCCTCCACCACAGCAGAATTATAACGCGCCACAGGGTCCTCCACCCCAGCAGAACTATGGCCCACCAAGGTATCCTCCACCGCAACAGAACTATGGCTCACGACAGTATGCTCCGCCACCTCAACAGAACTACAGACAACCACAGGATCTTTCTCCACAGCAGAATTATGAGCGGCCACAGAATCCTCAGCCAAACCAGAGTTACGGTGTACCTCAGAGTGTTCCTTCTCAGTGGAATCATGGCCTTCAGCCAAAATTTGTACCTCAACAGATCTATGGGCCTCAAGGGGCTGGGGATCATAGGGGTCCTGCACCTCCTGATAGCAACCTAGATGCGTGGGATAATTCCCAGGTTGGATGGGGTGATTCAATACGTTCACCTTTTCCTCGAAGAGACCAGAGAGGTGGTGCACCTCCAGAGCAAGGAGGCTTTGGAGGAGTTCAACATTATGGGTCTCAACAAGGTGGAAGTTCTGAACAACAAACCTTTGGAGATCAACCACTGAGATATGGGCCCCAGTTTGGGCAGAACAATCCAAGGCCAGGAGGAAATCAGAATTTCCCACCGATAGAGCAGCAGGGCAACATGCAAGGGGGGGAGCAGAGGACTTATGCATCTAGTGGTACAATGGGAACAGATCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGATACTAAAGATATGGTGCAGTATCATGACGTACTGAGAAAGGATTGTTAATTAGCTTTTGACTAGCTAAAGGTGATGGTTCTTGTCTGAATAATTGAGAAATGATCATGATCACATCCTCTAGTCTCAACAATTACCAAGAAACTTGGGCTGAAGAATGTTGTGGTAAATAGTTTTCCAATGTCTTAATATGGTTATGGAAATGGGGTTTTGTGAATGATAACATGGAGAGACTTAGGTGTAAAACAAGCCTCTTGTATCTGTTTTCTTTTGTGCAAGGAAGAAAGTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U598568" ref_strand="+" ref_description="SGN-U598568 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ggggataaaactgaaatttaatcggcacttctcttctccctttctattccctaattcaattctaaaaccctaaaccctagcacagagtttacttactcatttcattctctcctccgtcggcaaccacacatatccaccagcgatggcgctgtatacttcccgtctccggcgagctctccctctttcttcttcaatttttgctcaaactttccatcaaccaaatctcatttctccaattgcatcactctcccaatgtacgtctacccaaagcaatttgtctaagcttaaccgtttcgattttccgtcccaatggagactatttaggtcttctacaatatcgctgtcctcgaggtctcgatcatttgaccgaaatccagctgacgatgaaataggtcccgacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="-" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="56741" stop="55744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56445" g_stop="56044" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="-" ref_id="SGN-U598568" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U598568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56445" e_stop="56044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAATAAAACTGAAATTTAATCGGCACTTCTCTTCTCCCTTTCTATTCCCTAATTCAATTCTAAAACCCTAAACCCTAGCACAGAGTTTACTTCCTCATTTCATTCTCTCCTCCGTCGGCAACCACACATATCCACCAGCGATGGCGCTGTATACTTCCCGTCTCCGGCGAGCTCTCCCTCTTTCTTCTTCAATTTTTGCTCAAACTTTCCATCAACCAAATCTCATTTCTCCAATTGCATCACTCTCCCAATGTACGTCTACCCAAAGCAATTTGTCTAAGCTTAACCGTTTCGATTTTCCGTCCCAATGGAGACTATTTAGGTCTTCTACAATATCGCTGTCCTCGAGGTCTCGATCATTTGACCGAAATCCAGCTGACGATGAAATAGGTCCCGACAC</genome_strand>
        <mrna_strand>GGGGATAAAACTGAAATTTAATCGGCACTTCTCTTCTCCCTTTCTATTCCCTAATTCAATTCTAAAACCCTAAACCCTAGCACAGAGTTTACTTACTCATTTCATTCTCTCCTCCGTCGGCAACCACACATATCCACCAGCGATGGCGCTGTATACTTCCCGTCTCCGGCGAGCTCTCCCTCTTTCTTCTTCAATTTTTGCTCAAACTTTCCATCAACCAAATCTCATTTCTCCAATTGCATCACTCTCCCAATGTACGTCTACCCAAAGCAATTTGTCTAAGCTTAACCGTTTCGATTTTCCGTCCCAATGGAGACTATTTAGGTCTTCTACAATATCGCTGTCCTCGAGGTCTCGATCATTTGACCGAAATCCAGCTGACGATGAAATAGGTCCCGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584262" ref_strand="+" ref_description="SGN-U584262 Tomato 200607#2 [17 ESTs aligned] (*GB) gi|5734438|emb|CAB52688.1| (e_value=5e-158) hexose transporter [Lycopersicon esculentum]; (*ATH) AT1G11260.1 (e_value=3e-119) | Symbol: None | glucose transporter (STP1), nearly identical to glucose transporter GB:P23586 SP:P23586 from (Arabidopsis thaliana) | chr1:3777329-3780337 FORWARD | Aliases: T28P6.9, T28P6_9; (*SWP) sp|Q41144|STC_RICCO (e_value=1e-119) Sugar carrier protein C OS=Ricinus communis GN=STC; ">
      <seq>aaccacgacgaagccaaagctcgattgaagagaattaggggaattgaagatgtagatgaagagttcaatgatttggttattgctagtgaagcttctaggaaaattgaacatccctggaggaacttgttgcaaaagaaatatagaccacatcttacaatggcaattatgatcccatttttccaacaacttactggaatcaacgtgattatgttttatgcacctgtgttgtttaaaaccattggttttggtactgatgcttcacttatgtctgctgtgatcactggtggaatcaatgtcattgccactattgtttctatttactatgttgataaattaggaagaagattcttgtttcttgaaggtggaattcaaatgctcttttcccaaatagccgtggcaattttgatagcaataaagtttggagtaaatggaactccaggggaattaccaaaatggtatgcaatagtggttgtgatattcatttgtgtatatgttgctggattcgcttggtcatggggtcctcttggatggctcgtacctagtgaaattttcccactggaaattcgatcagctgcacaaagtatcaatgtctcagtgaacatgatcttcacatttgcagtagcacaagttttcttaacaatgttgtgtcatttgaagtttggattgtttctgtttttcgccttctttgtggtgattatgactgtgttcatatacttcttcttgcctgagacgaaaaatattccgatagaagagatggtgattgtgtggaaagaacattggttctggtctaagttcatgactgaagttgattatcctggaactaggaatggaactgctgttgaaatggctaaagggggtgctggttacaaaattgtatgactttagtttgggtttttaaatttttatttgttgtttgtataatgttgtagtggggatgatattgataattattaattagatttgattgaaactgtttctattgtttacttttgcatagaaaaaaatacataactttgttcaatagaaaatttggcaaagcaactgtgtagccctttgtttgttttgttggatgtactatttagtagttctagtcttttagtgtaagatctttattataaaaaattatgttcataagctgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="66690" stop="68518"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66990" g_stop="67376" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67377" i_stop="67466" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67467" g_stop="68220" g_length="754"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="1141" r_length="754" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-U584262" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1141</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U584262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66990" e_stop="67376"/>
          <exon e_start="67467" e_stop="68220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCACGACGAAGCCAAAGCTCGATTGAAGAGAATTAGGGGAATTGAAGATGTAGATGAAGAGTTCAATGATTTGGTTATTGCTAGTGAAGCTTCTAGGAAAATTGAACATCCCTGGAGGAACTTGTTGCAAAAGAAATATAGACCACATCTTACAATGGCAATTATGATCCCATTTTTCCAACAACTTACTGGAATCAACGTGATTATGTTTTATGCACCTGTGTTGTTTAAAACCATTGGTTTTGGTACTGATGCTTCACTTATGTCTGCTGTGATCACTGGTGGAATCAATGTCATTGCCACTATTGTTTCTATTTACTATGTTGATAAATTAGGAAGAAGATTCTTGTTTCTTGAAGGTGGAATTCAAATGCTCTTTTCCCAAGTAAGTCCATTTCTTTTTTCTTGCGAATTCAGAAAATTTAGAGTCTATTTTCTAATTTGAACTTGTTTTTTTTTTTGAATTGATGTACAGATAGCCGTGGCAATTTTGATAGCAATAAAGTTTGGAGTAAATGGAACTCCAGGGGAATTACCAAAATGGTATGCAATAGTGGTTGTGATATTCATTTGTGTATATGTTGCTGGATTCGCTTGGTCATGGGGTCCTCTTGGATGGCTCGTACCTAGTGAAATTTTCCCACTGGAAATTCGATCAGCTGCACAAAGTATCAATGTCTCAGTGAACATGATCTTCACATTTGCAGTAGCACAAGTTTTCTTAACAATGTTGTGTCATTTGAAGTTTGGATTGTTTCTGTTTTTCGCCTTCTTTGTGGTGATTATGACTGTGTTCATATACTTCTTCTTGCCTGAGACGAAAAATATTCCGATAGAAGAGATGGTGATTGTGTGGAAAGAACATTGGTTCTGGTCTAAGTTCATGACTGAAGTTGATTATCCTGGAACTAGGAATGGAACTGCTGTTGAAATGGCTAAAGGGGGTGCTGGTTACAAAATTGTATGACTTTAGTTTGGGTTTTTAAATTTTTATTTGTTGTTTGTATAATGTTGTAGTGGGGATGATATTGATAATTATTAATTAGATTTGATTGAAACTGTTTCTATTGTTTACTTTTGCATAGAAAAAAATACATAACTTTGTTCAATAGAAAATTTGGCAAAGCAACTGTGTAGCCTTTTGTTTGTTTTGTTGGATGTACTATTTAGTAGTTCTAGTCTTTTAGTGTAAGATCTTTATTATAAAAAATTATGTTCATAAGCTGTGC</genome_strand>
        <mrna_strand>AACCACGACGAAGCCAAAGCTCGATTGAAGAGAATTAGGGGAATTGAAGATGTAGATGAAGAGTTCAATGATTTGGTTATTGCTAGTGAAGCTTCTAGGAAAATTGAACATCCCTGGAGGAACTTGTTGCAAAAGAAATATAGACCACATCTTACAATGGCAATTATGATCCCATTTTTCCAACAACTTACTGGAATCAACGTGATTATGTTTTATGCACCTGTGTTGTTTAAAACCATTGGTTTTGGTACTGATGCTTCACTTATGTCTGCTGTGATCACTGGTGGAATCAATGTCATTGCCACTATTGTTTCTATTTACTATGTTGATAAATTAGGAAGAAGATTCTTGTTTCTTGAAGGTGGAATTCAAATGCTCTTTTCCCAA..........................................................................................ATAGCCGTGGCAATTTTGATAGCAATAAAGTTTGGAGTAAATGGAACTCCAGGGGAATTACCAAAATGGTATGCAATAGTGGTTGTGATATTCATTTGTGTATATGTTGCTGGATTCGCTTGGTCATGGGGTCCTCTTGGATGGCTCGTACCTAGTGAAATTTTCCCACTGGAAATTCGATCAGCTGCACAAAGTATCAATGTCTCAGTGAACATGATCTTCACATTTGCAGTAGCACAAGTTTTCTTAACAATGTTGTGTCATTTGAAGTTTGGATTGTTTCTGTTTTTCGCCTTCTTTGTGGTGATTATGACTGTGTTCATATACTTCTTCTTGCCTGAGACGAAAAATATTCCGATAGAAGAGATGGTGATTGTGTGGAAAGAACATTGGTTCTGGTCTAAGTTCATGACTGAAGTTGATTATCCTGGAACTAGGAATGGAACTGCTGTTGAAATGGCTAAAGGGGGTGCTGGTTACAAAATTGTATGACTTTAGTTTGGGTTTTTAAATTTTTATTTGTTGTTTGTATAATGTTGTAGTGGGGATGATATTGATAATTATTAATTAGATTTGATTGAAACTGTTTCTATTGTTTACTTTTGCATAGAAAAAAATACATAACTTTGTTCAATAGAAAATTTGGCAAAGCAACTGTGTAGCCCTTTGTTTGTTTTGTTGGATGTACTATTTAGTAGTTCTAGTCTTTTAGTGTAAGATCTTTATTATAAAAAATTATGTTCATAAGCTGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582470" ref_strand="+" ref_description="SGN-U582470 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|157329494|emb|CAO40467.1| (e_value=1e-99) unnamed; (*ATH) AT4G21450.1 (e_value=1e-93) | Symbol: None | vesicle-associated membrane family protein / VAMP family protein, similar to VAP27 GI:6688926 (Nicotiana plumbaginifolia) | chr4:11426034-11428354 FORWARD | Aliases: F18E5.70, F18E5_70; ">
      <seq>aactttgcccgttgcatttccaaaattcaactccctgctattccaaaaagtgttgtcaacaagctgtcaataaaggagactgcacgacgtcgttctgaaatctccgaattaccggtgaaagttccttagtttccggtatctgatggcgatcgccgacgagaaggacggtaaagtttggggactgtttaagctcccttttcgaaacgcacagtcaacgacgacttcgcgttcgtcttcgcataatactcttcattaccgcagtcaacaacatcaatctctcggaaatacttctctggatgatggatcggttcctcgtagcaacagttccagctccgtttcttcagtagccaggtctttgcttcctgcacgccgtcggttgaaacttgatccttccaataagctttattttccttatgaacctggtaagcaagttcgaagtgctatcaagataaaaaactccagcaagtctcacgtagctttcaagttccaaacaactgcacccaaaagctgtttcatgcgtcctcccggagcaattctcgcccccggtgagagcatcattgcaaccgtattcaagtttgtagagcatccagaaaataatgaaaaaccaatggaccagaagagcagagtgaagttcaagatcatgagcctcaaggtgaaaggaccgatggactatgtacctgagctgtttgaagagcaaaaggatcaagtagccgtagagcaaattctgcgggttatctttctcgatgtggaacgtcctagtccaactttggaaaaattgaagcgccagctggcggaggcagacgctgctcttgaggaacgcaagaagcctgtggaagatacaggtccaaagattattggtgaagggcttgtcatagatgaatggaaggaaagaagagagaggtacctagctcggcagcaagttgaaggcggtgtggaatctgtataacttgcaggtattgtttcgacatcttagctttggctggaaaagataccagccttattgttgtgtgtaattggttgttctattatgtcactaaacacattagtgaacattcacaagagagaatttcaatgtcccaatcacagttacttggtataacctcaaagctgtatataatgtcattccttttaagtaatgagagattttcagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="-" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="79616" stop="74893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79316" g_stop="78904" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78903" i_stop="76901" i_length="2003">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76900" g_stop="76830" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="484" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76829" i_stop="76663" i_length="167">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76662" g_stop="76581" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="566" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76580" i_stop="76442" i_length="139">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76441" g_stop="76323" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="685" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76322" i_stop="75897" i_length="426">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75896" g_stop="75819" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="763" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75818" i_stop="75681" i_length="138">
            <donor d_prob="0.763" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75680" g_stop="75561" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="764" r_stop="883" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75560" i_stop="75463" i_length="98">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.924" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75462" g_stop="75193" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="884" r_stop="1153" r_length="270" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="-" ref_id="SGN-U582470" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1153</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U582470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79316" e_stop="78904"/>
          <exon e_start="76900" e_stop="76830"/>
          <exon e_start="76662" e_stop="76581"/>
          <exon e_start="76441" e_stop="76323"/>
          <exon e_start="75896" e_stop="75819"/>
          <exon e_start="75680" e_stop="75561"/>
          <exon e_start="75462" e_stop="75193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTGCCCGTTGCATTTCCAAAATTCAACTCCCTGCTATTCCAAAAAGTGTTGTCAACAAGCTGTCAATAAAGGAGACTGCACGACGTCGTTCTGAAATCTCCGAATTACCGGTGAAAGTTCCTTAGTTTCCGGTATCTGATGGCGATCGCCGACGAGAAGGACGGTAAAGTTTGGGGACTGTTTAAGCTCCCTTTTCGAAACGCACAGTCAACGACGACTTCGCGTTCGTCTTCGCATAATACTCTTCATTACCGCAGTCAACAACATCAATCTCTCGGAAATACTTCTCTGGATGATGGATCGGTTCCTCGTAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTGCTTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTTGTAAGACTCTATTCTCTCTCCTTATTTTTTGATTATCTGCAAATCTCATTGATATTCCGTTGAAATTAGTGTTTGTGGAACTTAAAACTAGCTTTAATTGGTGGAATTAACAGGTCGTCCATTTCATTTTACTTGTCCATTTCAACGAATTTATTACTTTCTTTCCAATGTTGCCTTTAGTGTTAAATAACTATATAAAGCCAAGTAATATGAAATGAAGGTAGTATAACTTAGTCGTTCATCATTGATTGGTTAATAATTGTTTAGGTAAGGCCTTAGTGATGCATTATATGATAATGCTTATTTTAGATCATGTCGTCTTGCAATAAAGTGTTATCAATTTTTGGTCAAGTTTCTATTCAGCAGTGTTTAGTATGGGAAAGGCCAGCCAACCAGATCCTTTTATTTTTGGAACAGACCGTTGTGTGTTATGATGACCTCTCAATTAAAGCTTGCTCAGAGACATGCTATATTTCATCCCTCGTGCATTTGTATGGAGGATACCACTTGAAATTTGTTGCAGTGAATATCAGTAGAATGATTCTTCTTTCATTTTATATGTCTTAATTTGATTAGACAAGAAATTTAAGAAAGTATGAGAGACTTTTGAATCTAACTTAAAGTGAAGATGTGCAAAATTCATTCTGGCAGTTATAACCATGCCATGTGGGATGTAGGAATTGTAGGGTAACTATAAATATAGAAAGTGATTGTGTTTTTTATGAGACATACCATAAAAAAAACTACTCCCTCCGTTTAAAAAAAAATGATTTCTTTCTTTTTTTGGCAACACTTTAACTTTAACTTTCCACGTGACATGTTTAAAACCACAAGATTAAAGTATATTTTGGTACATTTGACATAAATTTAATTTAGAACCACAAGGTCAAAAAGTTTCTTTCATTTCTTAAACTCCGTTCCAAATCAAACTAGGCCATCCTTTTTGAAACGGAGGGAGTATGACATAAATTGAAAAAGAGGGATTATAACTGAAGATTTTCATTGATCACTTGTCATACGCCTTTTCTTTTTATGTTAGGATCCTCCGCCTGCTCGTGTATATCCTATCAGTGAGGTCGAATTACCAAACCCACTATGCAGAAAATAATTCAATATATCATCTTTAATTAATGAGTCTCACGCAGTGGGTGTTATGCAACACTAGGTGGTGTCTCTTTCCTTTCCTTATGTGAAAGTCTTTTTACTTTTATATTGTTCGACTCTTGCAATATATCAAAGAAACATCATCCGATTCTTGTGAAATTAGATTAGTGATTATAAAATGTAAAGCTAGTCCTCTAAATCATGAGATGAATGATTGTGTATGTGTAGAGTATGTTAATTTGATCGCACATGTGTTTGATATAGTTATGTACACCTAAGATAGCGTAAACAAATTTCTAGAACCTCTTCTGTCAATGCATGTTGCCTATCTCGGACAGGAGTATATACCAGATCCTAGAAGTGTGATTGTAATAACTAACCTACTCTAGTTGTCTCCTAAATAGTTGAAACCGTTTTGGTAGTTAGCGTTACATATCAGTATACTCTTCTCTTGATGTAGCCTGGTTTCAGGAATCTGACTTGTTGAATACAGTATTTTTCTTGAGAAAGCTCATTGGGGTTTTGGTTGGAGGTTTTTGAACTCTTCGTATCTGATCCCATGGCTTTACAAGTTGGTGGTTAGTGTAGTTTATGCATCTGGATATTTTGCAAATGCGCTCTCTAGTGATCAACAAGATTGTATGAACTTCTTTATACTTGTGCTTGTAAAGGACTGCTTCCGAGTTTTACCTTTTTTCAATTATTCTCTACTTTAGTTATGCTAGAATATCACCTGTTGTTGGCTGTCATAGATATAGATGTGCATTACTGACTTCCAAAAGATCAACATTTTATGATTTTTCCTGGAAGATCTGGTTCTTAATAATTAAAGTTCCCCTTTTTTCCGTTGTTATTGAATACGTTTCTCATTTTATTTGATGCCTCTTTCGATTTGCTAGATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAGGTACTCATGATTTCTTGTCTCTTCTCCATACACGGGCACTTCATTCTCCCCTAGCCGTCTTTATAGTTTTTAGCTAGAAACTATTTTGAGAATATATCTTGACATATTTATTTTATATGCATTGTTGTTTTTACATGGTTGGTGATGTTTGCCTGTTCTGCATTTAGTTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCGGTAATATTCATCACTCTTAGTCTATTTCCTTTCACATTCTTCTTGTGAATACCATTTTATGCAAGATGCAATTGTCATGTTGCAATTGAATAATTACATTGTGCAAGTATTTCATTCTGATTTTGTGTCAATGTTATAGTATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAAAACCAATGGACCAGAAGAGCAGAGTGAAGTTCAAGATCATGAGCCTCAAGGTGAAAGGACCGATGGACTATGTACCTGAGCTGGTTAGTAGATTATTTCTTTGCAAGGAAGTTCCTTTCCTTTTTAGCATGTCCTTCAGCACTTCCAGTTTCCGTGATAAAAGAAGCTGGTTTTGAGTCTGTTCTATACTTTTATTACATTAGGTCAATTGTTTCTTTCTGGGGGTTTGGTGGGCTGGGGGCTTCAGTTATCACTTTTTGATGGCGAAGGCATACTTCTGATTTTTGTCAAAGAACATCGGGTTCTCCCTCAGTAGGTTTTTGTTTTCAATGATAATGTGGTGAATTATACCACCAAAATTGGCTCTGTGATGAACTGCATAGTCATTACACTTCAGCAAAGATGTTTTCATCCATGCTGAAAGATGCATTTTTAATTATGTTGAAAACTGCATAGCTTTAGGGGAAACCTGTTCAAATTATCTCTAATCATCGCCTCTATGTTCTTAGTTTGAAGAGCAAAAGGATCAAGTAGCCGTAGAGCAAATTCTGCGGGTTATCTTTCTCGATGTGGAACGTCCTAGTCCAGTAAGTATACATTATAGTGAACATCCATATCATGATGCCATTCTTGTTGGTTTTTCACTTCAGATTATGAAAGAGCATCCTTTATAAGGCAGAGAAAAAAATCATCTAACGAGTTTTTGTTCATTTTGTCTTGTGAAGACTTTGGAAAAATTGAAGCGCCAGCTGGCGGAGGCAGACGCTGCTCTTGAGGAACGCAAGAAGCCTGTGGAAGATACAGGTCCAAAGATTATTGGTGAAGGGCTTGTCATAGATGAATGGGTAACTATCGTTTCAACTTACAATTAGAATCTTGTAATTCCTTTTCCTGACGCTTTAGTGTTTCATAATCCTGTTTTCTTCTCCTTTGTGCTTTATAGAAGGAAAGAAGAGAGAGGTACCTAGCTCGGCAGCAAGTTGAAGGCGGTGTGGAATCTGTATAACTTGCAGGTATTGTTTCGACATCTTAGCTTTGGCTGGAAAAGATACCAGCCTTATTGTTGTGTGTAATTGGTTGTTCTATTATGTCACTAAACACATTAGTGAACATTCACAAGAGAGAATTTCAATGTCCCAATCACAGTTACTTGGTATAACCTCAAAGCTGTATATAATGTCATTCCTTTTAAGTAATGAGAGATTTTCAGTTG</genome_strand>
        <mrna_strand>AACTTTGCCCGTTGCATTTCCAAAATTCAACTCCCTGCTATTCCAAAAAGTGTTGTCAACAAGCTGTCAATAAAGGAGACTGCACGACGTCGTTCTGAAATCTCCGAATTACCGGTGAAAGTTCCTTAGTTTCCGGTATCTGATGGCGATCGCCGACGAGAAGGACGGTAAAGTTTGGGGACTGTTTAAGCTCCCTTTTCGAAACGCACAGTCAACGACGACTTCGCGTTCGTCTTCGCATAATACTCTTCATTACCGCAGTCAACAACATCAATCTCTCGGAAATACTTCTCTGGATGATGGATCGGTTCCTCGTAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTGCTTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAG.......................................................................................................................................................................TTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCG...........................................................................................................................................TATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAAAACCAATGGACCAGAAGAGCAGAGTGAAGTTCAAGATCATGAGCCTCAAGGTGAAAGGACCGATGGACTATGTACCTGAGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAGAGCAAAAGGATCAAGTAGCCGTAGAGCAAATTCTGCGGGTTATCTTTCTCGATGTGGAACGTCCTAGTCCA..........................................................................................................................................ACTTTGGAAAAATTGAAGCGCCAGCTGGCGGAGGCAGACGCTGCTCTTGAGGAACGCAAGAAGCCTGTGGAAGATACAGGTCCAAAGATTATTGGTGAAGGGCTTGTCATAGATGAATGG..................................................................................................AAGGAAAGAAGAGAGAGGTACCTAGCTCGGCAGCAAGTTGAAGGCGGTGTGGAATCTGTATAACTTGCAGGTATTGTTTCGACATCTTAGCTTTGGCTGGAAAAGATACCAGCCTTATTGTTGTGTGTAATTGGTTGTTCTATTATGTCACTAAACACATTAGTGAACATTCACAAGAGAGAATTTCAATGTCCCAATCACAGTTACTTGGTATAACCTCAAAGCTGTATATAATGTCATTCCTTTTAAGTAATGAGAGATTTTCAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596518" ref_strand="+" ref_description="SGN-U596518 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157329494|emb|CAO40467.1| (e_value=7e-19) unnamed; (*ATH) AT4G05060.1 (e_value=1e-16) | Symbol: None | vesicle-associated membrane family protein / VAMP family protein, similar to VAP27 GI:6688926 (Nicotiana plumbaginifolia) | chr4:2590063-2592161 REVERSE | Aliases: C17L7.8; ">
      <seq>gcccgttgcatttccnaaattcaactccctgctattccaaaaagtgttgtcaacaagctgtcaataaaggagactgcacgacgtcgttctgaaatctccgaattaccggtgaaagttccttagtttccggtatctgatggcgatcgccgacgagaaggacggtaaagtttggggactgtttaagctcccttttcgaaacgcacagtcaacgacgacttcgcgttcgtcttcgcataatactcttcattaccgcagtcaacaacatcaatctctcggaaatacttctctggatgatggatcggttcctcgtagcaacagttccagctccgtttcttcagtagccaggtctttgcttcctgcacgccgtcggttgaaacttgatccttccaataagctttattttccttatgaacctggtaagcaagttcgaagtgctatcaagataaaaaactccagcaagtctcacgtagctttcaaggtactcatgatttcttgtctcttctccatacacgggcacttcattctcccctagccgtctttatagtttttagctagaaactattttgagaatatatcttgacatatttattttatatgcattgttgtttttacatggttggtgatgtttgcctgttctgcatttagttccaaacaactgcacccaaaagctgtttcatgcgtcctcccggancaattctcgcccccggtgagagcatcattgcaaccggtaatattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="-" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="79610" stop="76271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79310" g_stop="78904" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78903" i_stop="76901" i_length="2003">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76900" g_stop="76571" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="737" r_length="330" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="-" ref_id="SGN-U596518" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U596518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79310" e_stop="78904"/>
          <exon e_start="76900" e_stop="76571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCGTTGCATTTCCAAAATTCAACTCCCTGCTATTCCAAAAAGTGTTGTCAACAAGCTGTCAATAAAGGAGACTGCACGACGTCGTTCTGAAATCTCCGAATTACCGGTGAAAGTTCCTTAGTTTCCGGTATCTGATGGCGATCGCCGACGAGAAGGACGGTAAAGTTTGGGGACTGTTTAAGCTCCCTTTTCGAAACGCACAGTCAACGACGACTTCGCGTTCGTCTTCGCATAATACTCTTCATTACCGCAGTCAACAACATCAATCTCTCGGAAATACTTCTCTGGATGATGGATCGGTTCCTCGTAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTGCTTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTTGTAAGACTCTATTCTCTCTCCTTATTTTTTGATTATCTGCAAATCTCATTGATATTCCGTTGAAATTAGTGTTTGTGGAACTTAAAACTAGCTTTAATTGGTGGAATTAACAGGTCGTCCATTTCATTTTACTTGTCCATTTCAACGAATTTATTACTTTCTTTCCAATGTTGCCTTTAGTGTTAAATAACTATATAAAGCCAAGTAATATGAAATGAAGGTAGTATAACTTAGTCGTTCATCATTGATTGGTTAATAATTGTTTAGGTAAGGCCTTAGTGATGCATTATATGATAATGCTTATTTTAGATCATGTCGTCTTGCAATAAAGTGTTATCAATTTTTGGTCAAGTTTCTATTCAGCAGTGTTTAGTATGGGAAAGGCCAGCCAACCAGATCCTTTTATTTTTGGAACAGACCGTTGTGTGTTATGATGACCTCTCAATTAAAGCTTGCTCAGAGACATGCTATATTTCATCCCTCGTGCATTTGTATGGAGGATACCACTTGAAATTTGTTGCAGTGAATATCAGTAGAATGATTCTTCTTTCATTTTATATGTCTTAATTTGATTAGACAAGAAATTTAAGAAAGTATGAGAGACTTTTGAATCTAACTTAAAGTGAAGATGTGCAAAATTCATTCTGGCAGTTATAACCATGCCATGTGGGATGTAGGAATTGTAGGGTAACTATAAATATAGAAAGTGATTGTGTTTTTTATGAGACATACCATAAAAAAAACTACTCCCTCCGTTTAAAAAAAAATGATTTCTTTCTTTTTTTGGCAACACTTTAACTTTAACTTTCCACGTGACATGTTTAAAACCACAAGATTAAAGTATATTTTGGTACATTTGACATAAATTTAATTTAGAACCACAAGGTCAAAAAGTTTCTTTCATTTCTTAAACTCCGTTCCAAATCAAACTAGGCCATCCTTTTTGAAACGGAGGGAGTATGACATAAATTGAAAAAGAGGGATTATAACTGAAGATTTTCATTGATCACTTGTCATACGCCTTTTCTTTTTATGTTAGGATCCTCCGCCTGCTCGTGTATATCCTATCAGTGAGGTCGAATTACCAAACCCACTATGCAGAAAATAATTCAATATATCATCTTTAATTAATGAGTCTCACGCAGTGGGTGTTATGCAACACTAGGTGGTGTCTCTTTCCTTTCCTTATGTGAAAGTCTTTTTACTTTTATATTGTTCGACTCTTGCAATATATCAAAGAAACATCATCCGATTCTTGTGAAATTAGATTAGTGATTATAAAATGTAAAGCTAGTCCTCTAAATCATGAGATGAATGATTGTGTATGTGTAGAGTATGTTAATTTGATCGCACATGTGTTTGATATAGTTATGTACACCTAAGATAGCGTAAACAAATTTCTAGAACCTCTTCTGTCAATGCATGTTGCCTATCTCGGACAGGAGTATATACCAGATCCTAGAAGTGTGATTGTAATAACTAACCTACTCTAGTTGTCTCCTAAATAGTTGAAACCGTTTTGGTAGTTAGCGTTACATATCAGTATACTCTTCTCTTGATGTAGCCTGGTTTCAGGAATCTGACTTGTTGAATACAGTATTTTTCTTGAGAAAGCTCATTGGGGTTTTGGTTGGAGGTTTTTGAACTCTTCGTATCTGATCCCATGGCTTTACAAGTTGGTGGTTAGTGTAGTTTATGCATCTGGATATTTTGCAAATGCGCTCTCTAGTGATCAACAAGATTGTATGAACTTCTTTATACTTGTGCTTGTAAAGGACTGCTTCCGAGTTTTACCTTTTTTCAATTATTCTCTACTTTAGTTATGCTAGAATATCACCTGTTGTTGGCTGTCATAGATATAGATGTGCATTACTGACTTCCAAAAGATCAACATTTTATGATTTTTCCTGGAAGATCTGGTTCTTAATAATTAAAGTTCCCCTTTTTTCCGTTGTTATTGAATACGTTTCTCATTTTATTTGATGCCTCTTTCGATTTGCTAGATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAGGTACTCATGATTTCTTGTCTCTTCTCCATACACGGGCACTTCATTCTCCCCTAGCCGTCTTTATAGTTTTTAGCTAGAAACTATTTTGAGAATATATCTTGACATATTTATTTTATATGCATTGTTGTTTTTACATGGTTGGTGATGTTTGCCTGTTCTGCATTTAGTTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCGGTAATATTCA</genome_strand>
        <mrna_strand>GCCCGTTGCATTTCCNAAATTCAACTCCCTGCTATTCCAAAAAGTGTTGTCAACAAGCTGTCAATAAAGGAGACTGCACGACGTCGTTCTGAAATCTCCGAATTACCGGTGAAAGTTCCTTAGTTTCCGGTATCTGATGGCGATCGCCGACGAGAAGGACGGTAAAGTTTGGGGACTGTTTAAGCTCCCTTTTCGAAACGCACAGTCAACGACGACTTCGCGTTCGTCTTCGCATAATACTCTTCATTACCGCAGTCAACAACATCAATCTCTCGGAAATACTTCTCTGGATGATGGATCGGTTCCTCGTAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTGCTTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAGGTACTCATGATTTCTTGTCTCTTCTCCATACACGGGCACTTCATTCTCCCCTAGCCGTCTTTATAGTTTTTAGCTAGAAACTATTTTGAGAATATATCTTGACATATTTATTTTATATGCATTGTTGTTTTTACATGGTTGGTGATGTTTGCCTGTTCTGCATTTAGTTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGANCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCGGTAATATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603644" ref_strand="+" ref_description="SGN-U603644 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ggcgattggcggccaatcggccgaattgatgagttcctctatatatatcgttccattacacttggaaattttacaaaacagaatcgtcttgattaaaaaaaaaaaactagttgttacatgatcagtaaagtgcatcaaggtgtgatgagggtgattcatcaaggggtaaaggatcatcaagcaacaagacaaggtgacggtggaatcaaaactcttaaggactcgtcttggggtgctggtgctggatcatcttcaaggcaaacatggaaattctctgggggtgttgataccaatgctctgataaaagcagcaaaggctaaaaaaattaaacaggcggaaaagtcttttaggactgtcatgttcttgacctgctggggtccttaatctcatcaggggctctgctttgactcatcaaaatgagtcttttgtacaaaatgtcatatatgtatatacacactcatctgagtcttgggtttagggtttttgtatatatatatataaggaaagaccagtgagttttttaaactggctagggcatgtatatttgatagttcacagtgaatgaactacaactagtacagcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="-" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="84997" stop="83829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84687" g_stop="84129" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="585" r_length="559" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="-" ref_id="SGN-U603644" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U603644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84687" e_stop="84129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGAGTTCCTCTATATATATCGTTCCATTACACTTGGAAATTTTACAAAACAGAATCGTCTTGATTAAAAAAAAAAAACTAGTTGTTACATGATCAGTAGAGTGCATCAAGGTGTGATGAGGGTGATTCATCAAGGGGTAAAGGATCATCAAGCAACAAGACAAGGTGACGGTGGAATCAAGACTCTTAAGGACTCGTCTTGTGGTGCTGGTGCTGGATCATCTTCAAGGCAGACATGGAAATTCTCTGGTGGTGTTGATACCAATGCTCTGATAAAAGCAGCAAAGGCTAAGAAGATTAAACAGGCGGAAGAGTCTTTTAGGACTGTCATGTTCTTGACCTGCTGGGGTCCTTAATCTCATCAGTGGCTCTGCTTTGACTCATCAAAATGAGTCTTTTGTACAAAATGTCATATATGTATATACACACTCATCTGAGTCTTGGGTTTAGGGTTTTTGTATATATATATATAAGGAAAGACCAGTGAGTTTTTTAGACTGGCTAGTGCATGTATATTTGATAGTTCACAGTGAATGAACTACAACTAGTACAGCTTT</genome_strand>
        <mrna_strand>TGATGAGTTCCTCTATATATATCGTTCCATTACACTTGGAAATTTTACAAAACAGAATCGTCTTGATTAAAAAAAAAAAACTAGTTGTTACATGATCAGTAAAGTGCATCAAGGTGTGATGAGGGTGATTCATCAAGGGGTAAAGGATCATCAAGCAACAAGACAAGGTGACGGTGGAATCAAAACTCTTAAGGACTCGTCTTGGGGTGCTGGTGCTGGATCATCTTCAAGGCAAACATGGAAATTCTCTGGGGGTGTTGATACCAATGCTCTGATAAAAGCAGCAAAGGCTAAAAAAATTAAACAGGCGGAAAAGTCTTTTAGGACTGTCATGTTCTTGACCTGCTGGGGTCCTTAATCTCATCAGGGGCTCTGCTTTGACTCATCAAAATGAGTCTTTTGTACAAAATGTCATATATGTATATACACACTCATCTGAGTCTTGGGTTTAGGGTTTTTGTATATATATATATAAGGAAAGACCAGTGAGTTTTTTAAACTGGCTAGGGCATGTATATTTGATAGTTCACAGTGAATGAACTACAACTAGTACAGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U572028" ref_strand="+" ref_description="SGN-U572028 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157329491|emb|CAO40464.1| (e_value=1e-64) unnamed; (*ATH) AT4G05090.1 (e_value=2e-65)  Symbol: None | inositol monophosphatase family protein, low similarity to SP:Q42546 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) (DPNPase) {Arabidopsis thaliana}; contains Pfam profile PF00459: Inositol monophosphatase family | chr4:2609140-2611... ; (*SWP) sp|Q9M0Y6|DPNPM_ARATH (e_value=1e-64) Putative PAP-specific phosphatase, mitochondrial OS=Arabidopsis thaliana GN=At4g05090; ">
      <seq>gtccaccactttccaccattactcttcaagcaaacaaatttaacccaggtacatttcgcaaaaatagttgtacattccaggaataacaactaacaactacctgtcttgactccaatttcatagcctttatggatcttctacgttactccgcctcccgctatcctgcagctcatcttcaacttcccttccgtacgccacttcgccggcggttcgtcgccgttaggtcaagtttgagccttccgttcgcggagcagaaagctaagtattatagcgagctcgaagctgctgttgatgttgtcgagcgagcttgtcgtctctgcgttgacgtgaagaagtcactgttctcaagtgatggtaggattcttgagaaaaatgaccagaccccagtcaccattgcagattttggagtgcaggctttagttagcttggagatgaacaaactttttccctccatacctttggtggctgaagaggactctgcattcttgcgttcaaataatctggttggctcagtggttgatgttgtaaaggataaagcaactttaggagatgaagtaacagaagataatattttgaaagcaattgacagagggggaaaggatgcttatgtatttgcgcctgagccagccacttactggattctggatcctattgatggtacacgagggtttgttagaggtagtgaggctctctatgtggttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="86966" stop="90073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87266" g_stop="87488" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87489" i_stop="87621" i_length="133">
            <donor d_prob="0.674" d_score="1.00"/>
            <acceptor a_prob="0.895" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87622" g_stop="87724" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="326" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87725" i_stop="88429" i_length="705">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88430" g_stop="88532" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="429" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88533" i_stop="88851" i_length="319">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.838" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88852" g_stop="89060" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="638" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89061" i_stop="89706" i_length="646">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="89707" g_stop="89766" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="698" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-U572028" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U572028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87266" e_stop="87488"/>
          <exon e_start="87622" e_stop="87724"/>
          <exon e_start="88430" e_stop="88532"/>
          <exon e_start="88852" e_stop="89060"/>
          <exon e_start="89707" e_stop="89766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCACCACTTTCCACCATTACTCTTCAAGCAAACAAATTTAACCCAGGTACATTTCGCAAAAATAGTTGTACATTCCAGGAATAACAACTAACAACTACCTGTCTTGACTCCAATTTCATAGCCTTTATGGATCTTCTACGTTACTCCGCCTCCCGCTATCCTGCAGCTCATCTTCAACTTCCCTTCCGTACGCCACTTCGCCGGCGGTTCGTCGCCGTTAGGTCTCCCATCGCCGACACTTCTCTGCATATTTTTTTTCTTCAGTTGTTGAATTCGTATATTCGACCTCAATTAGTTTGAGACTGAGACACACATTGATTGATTGATATATGAGTGTGCTTTTTCTTCTTCCAGGTCAAGTTTGAGCCTTCCGTTCGCGGAGCAGAAAGCTAAGTATTATAGCGAGCTCGAAGCTGCTGTTGATGTTGTCGAGCGAGCTTGTCGTCTCTGCGTTGACGTAATTTCTCCTTTCACTGCGATTAATTAGATAATTTCTCCTTCAGTTCCAGTATATACGACTGTTTGAGTAGACAAATTATTAACAAAGTTAATTTGAAGTGAATTAGTGATAGTGGATTTAACATAATTTTCAGAATTTAATTTGACGTATTTAGAAGAGTATTGAAGTTATGCAAATATGATTCTCTAAAGTTGTATGGAAACGTTTTGGAAGGTGTCAAATATAAATTGGGACTGGTAGTTCTCATTTTTCTGTTGACTTAATTTGGCAACTACTGTTGGAGCTAATCAACCAAAAATATTCTGAGTTTCAAAGCTACTTTTTGGTTCTACAGTCTTAAAGAGAGTCTTTTGAGTTCAATTGAAAGATATGATGAATTTTAGACTAATGTTCTTGGAATTGGTTACAATGTGGATTCAAAAAGGCATTGCTTACTGCTTTCTGCTATCAATATGAATGCAGGTTTTCCTATCATATAAGTAGTTTCATAGCCAATGCACATTGCTAAACTAATACTATCTTGTTCTGAGGTACTTAAAATTAAAGACTTCTGAAACAAGTTGTCTGCACCTCATCTCAAACAAGGCATAATAGTCACTCAGTTTAGGTCAAACTTGCTCTACTTCTATACATCTGACTCATGAAGTGGCTGAGTTGAACCATTTTATCCACTAAGAATGGTGATCTCTTTATGATTTCTAGGTGAAGAAGTCACTGTTCTCAAGTGATGGTAGGATTCTTGAGAAAAATGACCAGACCCCAGTCACCATTGCAGATTTTGGAGTGCAGGCTTTAGTTAGCTTGGGTAAATTATACTGTATGTTCCTTTTTATTTACTGACTGCAGTTTCAGCTATCTAGTACTTCTCCATCACTCAAGAAAATAAGAAGGGATATTCATGGAAGTAAAATGATTAAGTTTATGAGTATAATTTTTGAAGAAGGATGAAATCACAATGTAGTTTTTGACAATATTGAAAATTATGGATATGATTTTTTGTGCTTATCCATTGGTTCACTTCAGTTCTCTTCTTTTTTTTAAAAAAAGAAAAATTGCCTGATAAAGTTTTTCCTTGGAGCTAAGATGAATTGTTTCTTGACTGGATTACATTCTTATTCTGATAGAGATGAACAAACTTTTTCCCTCCATACCTTTGGTGGCTGAAGAGGACTCTGCATTCTTGCGTTCAAATAATCTGGTTGGCTCAGTGGTTGATGTTGTAAAGGATAAAGCAACTTTAGGAGATGAAGTAACAGAAGATAATATTTTGAAAGCAATTGACAGAGGGGGAAAGGATGCTTATGTATTTGCGCCTGAGCCAGCCACTTACTGGGTGAGTTTCATGCTGTTTCCAAAGATATTCGCTAAGTTCATGTGATAAGAGATTAAAGTACTCCAAAGGCTTCAAGCTAAGGGAAAGTTCCTGAAGGGACTAGAATTCCTGAATTCATGTTGGGTTCGCTCTTTCACATTTTGTATGAAAAACACATTTGTCTAGTTGATGATCATTTGTTCAATTTTATGTTGAATATAGAATTTCCACGTTCTGAAGAATTCCAAAATTTGATTCTCTTTCTAGAATTTTGGTTAATTTAGAATTGTGTCATTAATATCTCCTGAGAAACATTTCAAGAGGTTATCGAACAGGTCATGGTGGGGGGGGGGGGGGGAAGGTTGGATGGATGGTAGAATATATGGAAACAGTTTCCTTCCCTTGGATAACCTTCGTTTAGTTGAAAATACATCTTCTTTTGTACATAAACTTTTACCAGACCAAGGGTAATATTTTTAAGGCCCTATTCACTTCTATCAATATGACATCAGGAAATACTTCCTTGTCTGTCTTTACTCTGTATTTTGTGATTAAAATAAGTTAACTTTTATCGTCCATGCCCTGAACAGCTGACAAAAAGGCATGTTTGCAGTTTATACTTGCATAGTTACTTGGGCTGCACTCATAAATTTCCAACCTCGTACAGATTCTGGATCCTATTGATGGTACACGAGGGTTTGTTAGAGGTAGTGAGGCTCTCTATGTG</genome_strand>
        <mrna_strand>GTCCACCACTTTCCACCATTACTCTTCAAGCAAACAAATTTAACCCAGGTACATTTCGCAAAAATAGTTGTACATTCCAGGAATAACAACTAACAACTACCTGTCTTGACTCCAATTTCATAGCCTTTATGGATCTTCTACGTTACTCCGCCTCCCGCTATCCTGCAGCTCATCTTCAACTTCCCTTCCGTACGCCACTTCGCCGGCGGTTCGTCGCCGTTAG.....................................................................................................................................GTCAAGTTTGAGCCTTCCGTTCGCGGAGCAGAAAGCTAAGTATTATAGCGAGCTCGAAGCTGCTGTTGATGTTGTCGAGCGAGCTTGTCGTCTCTGCGTTGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAAGTCACTGTTCTCAAGTGATGGTAGGATTCTTGAGAAAAATGACCAGACCCCAGTCACCATTGCAGATTTTGGAGTGCAGGCTTTAGTTAGCTTGG...............................................................................................................................................................................................................................................................................................................................AGATGAACAAACTTTTTCCCTCCATACCTTTGGTGGCTGAAGAGGACTCTGCATTCTTGCGTTCAAATAATCTGGTTGGCTCAGTGGTTGATGTTGTAAAGGATAAAGCAACTTTAGGAGATGAAGTAACAGAAGATAATATTTTGAAAGCAATTGACAGAGGGGGAAAGGATGCTTATGTATTTGCGCCTGAGCCAGCCACTTACTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTGGATCCTATTGATGGTACACGAGGGTTTGTTAGAGGTAGTGAGGCTCTCTATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U568173" ref_strand="+" ref_description="SGN-U568173 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157329491|emb|CAO40464.1| (e_value=1e-22) unnamed; (*ATH) AT4G05090.1 (e_value=2e-23)  Symbol: None | inositol monophosphatase family protein, low similarity to SP:Q42546 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) (DPNPase) {Arabidopsis thaliana}; contains Pfam profile PF00459: Inositol monophosphatase family | chr4:2609140-2611... ; (*SWP) sp|Q9M0Y6|DPNPM_ARATH (e_value=1e-22) Putative PAP-specific phosphatase, mitochondrial OS=Arabidopsis thaliana GN=At4g05090; ">
      <seq>gttcagggagaagaaggcgacatctattatcaaggtctgcgaccatgctgttggaatcatatgtgtccatgaagctggagggaaggtgactgactgggaaggaagttcacttgattttgcagcagatcaaactgaacggagactcatctttccttcaggcggtgttcttgtgactaatgggagcttacatagcaagattatcgaaatgatctcttcaaattcatcagttctttgacaggcttttggcattattgtgacaaaatcaatagtcagatactaatgaagatttcctccaattcatcaattgtttaatgacacttgcattcttttgacgaatcacagcatatagaagtatacatatcaatgtctctccattttcttcctcctcgtactcatcagtatctctctgttgtttctcataaatacctgtatcgatcttctttcatctgtatggaaggataatattggtggagaatgattcatgactgcagtctancttataaatcaatgttctttttgtttcttcccttcattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="91873" stop="98739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92172" g_stop="92204" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92205" i_stop="92273" i_length="69">
            <donor d_prob="0.987" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92274" g_stop="92324" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="85" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92325" i_stop="97988" i_length="5664">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97989" g_stop="98439" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="536" r_length="451" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-U568173" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U568173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92172" e_stop="92204"/>
          <exon e_start="92274" e_stop="92324"/>
          <exon e_start="97989" e_stop="98439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAGGG-GAAGAAGGCGACATCTATTATCAAGGTAATACTATCTTCTCGAGATTTTATAAGATTAGTGGAGCAGTATGATGCTCATATATGTTGAATGTAGGTCTGGGACCATGCTGTTGGAATCATATGTGTCCATGAAGCTGGAGGGAAGGTATGCATTTCTCTGTTGGTTTCTTTTTTGACATACCTTCTATACCTCTAATTGCCTGCCAACAGTTGCATCTTACAACCAGTTCTAAGAGAAGTCAGTGCTGCTGATATATCATTTATTTAACTACACAAACAGTTGTCAACTATATTGCATGTTATCAACACGCTTTTCGTTTTTTTTTCCTTAATAAAAAGAATTAAGTCATGTAAAGTACACCCTCTGGTATTGCAAATTCGAAGATATAGCTTTTATCTTTTCCTTTTTAGTCTAGATATAGTATTTTGAAGGCTTATCATCACTGTTTTAAAGGACTTTTCTTTGAAAAGTCAAATTCTGGAGGTTGATTCTCTTGCTTGACTGATTCATGCTTTGATTGGCTTTGAAAAATTATATTATCTGAAGAATTGAGTGAGGGTCCTAAATAGTGATTCATGAAACTTAAAATTCCATGTTAGAGGCTCGTTTTACTTGTGAAGAATCACAAAGTGACAAGAGGCTCGTTTTATAGTTTTATTTCTTGTTACTTTAATTCTTAAACTTTCTCGTATGTTTAAAAAAATGAAAGATGTGGGACACTGCAAGAGATAGCAGCAACTGGAAAAGAATGTGTTTGTTGAATGCCTTGAATCGGACCCGCTACAAACAGAAAGGACGGTATACAATGTTGTTGTATTGGGCCCTTAATTTTCTGTTGATTCTGTATGTTGGGCCCAAGCCTGTTAGGGCGTAGCTTAGCACTATATATAGACGCTATGGGAAACCCTATTCTGTAATTCTGTTTTTGCCTCTCCATAATAAAACTGCTCCCTCTCTTCCCGTGGACGTAGCCAACAAATTGGTGAACCACGTAAATCTGTTGTCTTGTTTTTCGCGTTTATATTTTCTCGTATTATCTCAAATTCCGCACAACAAATTGGTATCAGAGCCTCTCGGTTAATCGGTGTTCTTGGAGAATTCGAGATGTCTGCTTTGAACGTGAAAATCGACAAATTCACAGGGAGGAACAGTTTCAGTTTATGGCAGATCAAGATGCGGGCCTTGTTGAAACAGCAAGGCTTCTGGGCGCCGTTGTCGAAAGACAAGAACGCCGTCGTTACTCCTGAGATGGCGATTCTGGAGGAAAAGGCGCACTCGACGATCATGCTGTGTCTCGCGGATGACGTCATCACGGAGGTCTCGGATGAAGAGACTGCTGCTGGTCTGTGGTTGAAGCTGGAGAGTTTGTACATGACAAAATCTCTAACCAACAAGCTGCTTCTGAAACAACGTCTATTCGGTTTACGAATGGCTGAAGGTACACAACTCAGGGAACACTTAGAGCAATTGAATACTTTGTTATTAGAATTGCGTAATATCGATGTGAAGATCGAGGATGAAGATGCTGCCCTGATTCTGTTAGTATCTCTCCCAATGTCGTTTGAGAATTTTGTTCAATCGTTCATTGTTGGGAAAGATACTGTGTCACTGGAAGAAGTCAGATCAGCCCTTCATAGCAGGGAATTACGGCATAAGGCTAACGGCACAAGTACGGACATACAGCCTTCCGGTCTGTTCACCAGTAGTGGAAAGGGAAGGAAAAACGGCGGAAAGAAAAATAAGCCGATGTCGAAGGGTGCAAAGCCGGATGATGTTTGTAATTACTGCAAGGAGAAGGGACATTGGAAATTTGATTGTCCGAAGAAGAAGAAGCAATCGGAAAAACAATCAGTGTCTGCTGCTGTTGCTGAAGAAGACACCAATTCTGAAGAAGATATTGCCCTAGTTGCGGATGAGCACACTCATCATTCAGATGTGTGGGTTCTTGATTCTGGGGCATCCTATCACATCTGTTCTAGGAGAGAGTGGTTCACGACTTATGAGCAGGTAGACGGAGGCAGCATCTCGATGGCCAACAGTTCTGTCTGCAAGGTGGTTGGGACAGGCTCGATCAAGATAAGGACACATGACGGTAGCTTCTGCACATTGAACGAGGTCAGGCACGTTCCATTGATGACGAAAAATCTGATATCTCTCAGTCTTTTGGACAGCAAGGGATTCAGCTGGTCGGGAAAAGATGGAGTCTTGCGGGTCTGGAAGGGTTCAAATTTGATTCTGAAAGGTGTCATGCGTGGTACTTTGTATTTTCTACAAGGTTCCACGGTTACAGGTTCAGCCCATGTTGCATCGTCAGAATTTCACCAGAAGGATATGACTAAGTTATGGCACATGAGACTTGGTCATATGGGTGAAAGAGGGATGCAAATTCTGTCAAAGGAGGATTTACTTGCTGGTCATAAGGTTAAGAGCCTAGAGTTTTGTGAACATTGTGTTTTTGGAAAACTACATCGCAACAAGTTTCCAAAGGCCATTCATAGAACAAAAGGCACACTTGATTATATCCATTCTGATTGCTGGGGTCCATGCCGTGTTGAGTCTTTGTGAGGCTGCAGATTTTTTGTGTCCATTATTGATGACTACTCAAGGATGACTTGGGTGTACATGATGAAGCATAAAAGTGAAGCCTTCCAGAAGTTCAAGGAGTGGAAAATTTTGATGGAAAATCAAACAGGGAAGAAGATCAAGAGGTTGCGAACTGATAATGGGCTGGAATTTTGTTGGTCTGAATTTGATCAATTCTGTAAGGATGAAGGGATTGCTCGACATCGCACTGTCAGAAATACACCACAGCAGAACGGTGTAGCTGAGCGGATGAATCAAACACTTCTGGAGAGAGCAAGGTGCATGCTCTCTAATGCTGGGCTAGATAGAAGATTCTGGGCAGAAGCGGTTAGTACAGCTTGCTACTTGATTAACCGCGGACCACATACAGGCATACAGTGCAAGACACCTATGGAGATGTGGTCTGGAAAAGCTGCTGATTATTCAAATCTGAAAGCTTTTGGTTGTACGGCTTACTATCACGTCAGTGAAGGTAAGTTAGAACCAAGAGCTAAAAAGGGAGTATTTGTGGGCTACGGAGATGGAGTGAAAGGTTTCAGAATCTGGTCTCCAGCAGAAAAGAGGGTTATTATGAGCAGGAACGTTGTCTTTGATGAAAGTCCTCTGCTTAGAACCATTGTGAAGCCTACAACTACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACTCAGCCGGATGGTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGTTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTATATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGAAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAAAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTTGCAACCTACAGTGACTTTGTCTACTACGGAAGCGGAGTACATGGCCTTGACAGAGGCTGCAAAAGAAGGGATTTGGTTGAAAGGGCTGGTTAGTGATCTTGGTCTGCATCATGATCAGGCTACGGTGTATTGTGACAGTTTGAGCGCAATTTGTCTAGCCAAGGATCAAGTCCATCATGAGAGAACCAAGCATATCGACGTAAGGTATCATTTTCTGAGAAGTGAGAAGAGAATCAAGGTGAAGAAAGTAGGAACTGCTGATAATCCTGCTGATATGTTCACAAAGCCGGTTCCACAGAGCAAGTTTCAACACTGTTTGGACTTGCTCAACATCAGAAGCTGTTAATTGCCCTGTGGGGCAACTCTGAGGAAGAGGGGGAGGCCTGGCACTATCATAGTGCGTCTGAAGAATCTGTTCGGAGAATTCAAGTCAAGGTGGAGATTTGTTGAATGCCTTGAATCGGACCCGCTACAAACAGAAAGGACGGTATACAATGTTGTTGTATTGGGCCCTTAATTTTCTGTTGATTCTGTATGTTGGGCCCAAGCCTGTTAGGGCGTAGCTTAGCACTATATATAGACGCTATGGAAACCCTATTCTGTAATTCTGTTTTTGCCTCTCCATAATAAAACTGCTCCCTCTCTTCCCGTGGACGTAGCCAACAAATTGGTGAACCACGTAAATCTGTTGTCTTGTTTTTCGCGTTTATATTTTCTCGTATTATCTCAAATTCCGCACAACAGTGTTATCCTACATTACACCATCTGCTGCTTTCCACTTATCTGCTAACTGAAAAGTTGTTCACAACTTCATATCCAGGCATTTATATTTTGTGACGGCTGACACTAATTCATGCCTTGTTTTGTATTCACTGGCATCAATTTTCTATTTTTTTATGTTCATCTACATAATTTTTCTGCATGTGACATTGCCACTTGGACCCAAAGCAGAGGCCCACCTTTTAAGAAGCTTTGATCTTTGTCTTTGATTCTACTCCTGTTTATGACTCTGACTTTATCCTATATTCTTCAACTTATGCATTATAGTAATTGAATGTGGATGATTCATTCATAAAAGATGAGCAAGAACTAGATTGCTCAAATTTCCTGGTTATTTACTGTGCACCTTACTTGTCAGGTGACTGACTGGGAAGGAAGTTCACTTGATTTTGCAGCAGATCAAACTGAACGGAGACTCATCTTTCCTTCAGGCGGTGTTCTTGTGACTAATGGGAGCTTACATAGCAAGATTATCGAAATGATCTCTTCAAATTCATCAGTTCTTTGACAGGCTTTTGGCATTATTGTGACAAAATCAATAGTCAGATACTAATGAAGATTTCCTCCAATTCATCAATTGTTTAATGACACTTGCATTCTTTTGACGAATCACAGCATATAGAAGTATACATATCAATGTCTCTCCATTTTCTTCCTCCTCGTACTCATCAGTATCTCTCTGTTGTTTCTCATAAATACCTGTATCGTTCTTCTTTCATCTGTATGGAAGGATAATATTGGTGGAGAATGATTCATGACTGCAGTCTAGCTTATAAATCAATGTTCTTTTTGTTTCTTCCCTTCATTGA</genome_strand>
        <mrna_strand>GTTCAGGGAGAAGAAGGCGACATCTATTATCAAG.....................................................................GTCTGCGACCATGCTGTTGGAATCATATGTGTCCATGAAGCTGGAGGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTGACTGGGAAGGAAGTTCACTTGATTTTGCAGCAGATCAAACTGAACGGAGACTCATCTTTCCTTCAGGCGGTGTTCTTGTGACTAATGGGAGCTTACATAGCAAGATTATCGAAATGATCTCTTCAAATTCATCAGTTCTTTGACAGGCTTTTGGCATTATTGTGACAAAATCAATAGTCAGATACTAATGAAGATTTCCTCCAATTCATCAATTGTTTAATGACACTTGCATTCTTTTGACGAATCACAGCATATAGAAGTATACATATCAATGTCTCTCCATTTTCTTCCTCCTCGTACTCATCAGTATCTCTCTGTTGTTTCTCATAAATACCTGTATCGATCTTCTTTCATCTGTATGGAAGGATAATATTGGTGGAGAATGATTCATGACTGCAGTCTANCTTATAAATCAATGTTCTTTTTGTTTCTTCCCTTCATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603118" ref_strand="+" ref_description="SGN-U603118 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|133711804|gb|ABO36622.1| (e_value=8e-56) copia; (*SWP) sp|P10978|POLX_TOBAC (e_value=2e-23) Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum; ">
      <seq>cctagagttttgtgaacattgtgtttttggaaaactacatcgcaacaagtttccaaaggccattcatagaacaaaaggcacacttgattatatccattctgattgctggggtccatgccgtgttgagtctttgggaggctgcagattttttgtgtccattattgatgactactcaaggatgacttgggtgtacatgatgaagcataaaagtgaagccttccagaagtttaaggagtggaaaattttgatggaaaatcaaacagggaagaagatcaagaggttgcgaactgataatgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="94310" stop="95208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94610" g_stop="94908" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-U603118" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U603118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94610" e_stop="94908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGAGTTTTGTGAACATTGTGTTTTTGGAAAACTACATCGCAACAAGTTTCCAAAGGCCATTCATAGAACAAAAGGCACACTTGATTATATCCATTCTGATTGCTGGGGTCCATGCCGTGTTGAGTCTTTGTGAGGCTGCAGATTTTTTGTGTCCATTATTGATGACTACTCAAGGATGACTTGGGTGTACATGATGAAGCATAAAAGTGAAGCCTTCCAGAAGTTCAAGGAGTGGAAAATTTTGATGGAAAATCAAACAGGGAAGAAGATCAAGAGGTTGCGAACTGATAATGGGC</genome_strand>
        <mrna_strand>CCTAGAGTTTTGTGAACATTGTGTTTTTGGAAAACTACATCGCAACAAGTTTCCAAAGGCCATTCATAGAACAAAAGGCACACTTGATTATATCCATTCTGATTGCTGGGGTCCATGCCGTGTTGAGTCTTTGGGAGGCTGCAGATTTTTTGTGTCCATTATTGATGACTACTCAAGGATGACTTGGGTGTACATGATGAAGCATAAAAGTGAAGCCTTCCAGAAGTTTAAGGAGTGGAAAATTTTGATGGAAAATCAAACAGGGAAGAAGATCAAGAGGTTGCGAACTGATAATGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575023" ref_strand="+" ref_description="SGN-U575023 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|133711804|gb|ABO36622.1| (e_value=0) copia; (*ATH) AT4G23160.1 (e_value=3e-26) | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50; (*SWP) sp|P10978|POLX_TOBAC (e_value=2e-68) Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum; ">
      <seq>ganggnntgctcgacatcgtacagtcagaaatacaccacagcagaacggtgtagctgagcggatgaatcaaacacttctggagagagcaaggtgcatgctctctaatgctgggctagatagaagattctgggcagaagcggttagtacagcttgctacttgattaaccgcggaccacatacaggcatacagtgcaagacacctatggagatgtggtcagaaaaagctgctgattattcaaatctgaaagcttttggttgtatggcctactatcacgtcagtgaaggtaagttagaaccaagagctaaaaagggagtatttgtgggctacggagatggagtgaaaggtttcagaatctggtctccagcagaaaagagggttattatgagcaggaacgttgtctttgatgaaagttctctgcttagaaccattgtgaagcctacaactacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggctgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgatatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgactcagccggatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="94652" stop="96356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94951" g_stop="96056" g_length="1106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1106" r_length="1106" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-U575023" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>1106</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U575023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94951" e_stop="96056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGATTGCTCGACATCGCACTGTCAGAAATACACCACAGCAGAACGGTGTAGCTGAGCGGATGAATCAAACACTTCTGGAGAGAGCAAGGTGCATGCTCTCTAATGCTGGGCTAGATAGAAGATTCTGGGCAGAAGCGGTTAGTACAGCTTGCTACTTGATTAACCGCGGACCACATACAGGCATACAGTGCAAGACACCTATGGAGATGTGGTCTGGAAAAGCTGCTGATTATTCAAATCTGAAAGCTTTTGGTTGTACGGCTTACTATCACGTCAGTGAAGGTAAGTTAGAACCAAGAGCTAAAAAGGGAGTATTTGTGGGCTACGGAGATGGAGTGAAAGGTTTCAGAATCTGGTCTCCAGCAGAAAAGAGGGTTATTATGAGCAGGAACGTTGTCTTTGATGAAAGTCCTCTGCTTAGAACCATTGTGAAGCCTACAACTACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACTCAGCCGGATGGT</genome_strand>
        <mrna_strand>GANGGNNTGCTCGACATCGTACAGTCAGAAATACACCACAGCAGAACGGTGTAGCTGAGCGGATGAATCAAACACTTCTGGAGAGAGCAAGGTGCATGCTCTCTAATGCTGGGCTAGATAGAAGATTCTGGGCAGAAGCGGTTAGTACAGCTTGCTACTTGATTAACCGCGGACCACATACAGGCATACAGTGCAAGACACCTATGGAGATGTGGTCAGAAAAAGCTGCTGATTATTCAAATCTGAAAGCTTTTGGTTGTATGGCCTACTATCACGTCAGTGAAGGTAAGTTAGAACCAAGAGCTAAAAAGGGAGTATTTGTGGGCTACGGAGATGGAGTGAAAGGTTTCAGAATCTGGTCTCCAGCAGAAAAGAGGGTTATTATGAGCAGGAACGTTGTCTTTGATGAAAGTTCTCTGCTTAGAACCATTGTGAAGCCTACAACTACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGCTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGATATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACTCAGCCGGATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U604002" ref_strand="+" ref_description="SGN-U604002 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|133711804|gb|ABO36622.1| (e_value=2e-152) copia; (*ATH) AT4G23160.1 (e_value=1e-36) | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50; (*SWP) sp|P10978|POLX_TOBAC (e_value=4e-86) Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum; ">
      <seq>gggtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="95754" stop="97150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96053" g_stop="96850" g_length="798"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="810" r_length="810" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-U604002" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U604002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96053" e_stop="96850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGTTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTA-----T-C------TAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTATATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGAAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAAAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GGGTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U588563" ref_strand="+" ref_description="SGN-U588563 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gcttgttttatatattataataacagcttttcccccaaaacttgtgtcaatataattgaaaaatacattggtggattcctagcagaagcaaagaaaaaaaaatcaccaggagatgttttctcaacttacttaagcctgggaggcaagagttacttggtacatgtgttggtggaagttagcaagtagccagctaggtgcatacaagctggccagacaccatgtgaaggtaccagacaatggtaacataatatactaaccagttcagatacatatccactggtcctttcaccttgaggctcataattttgagcttcacttcagctcactcttttgatccttcggtttttcatttttatctggatgctctgcaaatttgattactatgacattgacttaagaaaatctgaacaaaatacttgcatgacacaattactcagctacaaatagacaaaaacaacttgaaagagaaggacataaactaagagtgaagaacattaccagcagctatcatcagtgaggacgcatgaagcagttcttggtccagttgtttggaactaatgcactgcagttgacagcaacaagtcagcaaccatgtatgcacattaatgtgtgtacacacgtcaatacatattctcaaaagagtttcaagccagagtgacactaaaagaaagaggagctagaacagagcgaggttgccaaaacggaagagagacatgaaatcatggtaattttgtcaaccttgaaatgtacttgagaccttttttatatagccaagaaaaatccgggggccgcggcgtatggttaaaccttgttgtttggtggacaatggacccgctcctctactcttctacacttaaatactaggcttttgtctgtcggggattcaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="98908" stop="100395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99207" g_stop="100095" g_length="889"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="889" r_length="889" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-U588563" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>889</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U588563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99207" e_stop="100095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTGTTTTATATATTATAATAACAGCTTTTCCCCCAAAACTTGTGTCAATATAATTGAAAAATACATTGGTGGATTCCTAGCAGAAGCAAAGAAAAAAAAATCACCAGGAGATGTTTTCTCAACTTACTTAAGCCTGGGAGGCAAGAGTTACTTGGTACATGTGTTGGTGGAAGTTAGCAAGTAGCCAGCTAGGTGCATACAAGCTGGCCAGACACCATGTGAAGGTACCAGACAATGGTAACATAATATACTAACCAGTTCAGATACATATCCACTGGTCCTTTCACCTTGAGGCTCATAATTTTGAGCTTCACTTCAGCTCACTCTTTTGATCCTTCGGTTTTTCATTTTTATCTGGATGCTCTGCAAATTTGATTACTATGACATTGACTTAAGAAAATCTGAACAAAATACTTGCATGACACAATTACTCAGCTACAAATAGACAAAAACAACTTGAAAGAGAAGGACATAAACTAAGAGTGAAGAACATTACCAGCAGCTATCATCAGTGAGGACGCATGAAGCAGTTCTTGGTCCAGTTGTTTGGAACTAATGCACTGCAGTTGACAGCAACAAGTCAGCAACCATGTATGCACATTAATGTGTGTACACACGTCAATACATATTCTCAAAAGAGTTTCAAGCCAGAGTGACACTAAAAGAAAGAGGAGCTAGAACAGAGCGAGGTTGCCAAAACGGAAGAGAGACATGAAATCATGGTAATTTTGTCAACCTTGAAATGTACTTGAGACCTTTTTTATATAGCCAAGAAAAATCCGGGGGCCGCGGCGTATGGTTAAACCTTGTTGTTTGGTGGACAATGGACCCGCTCCTCTACTCTTCTACACTTAAATACTAGGCTTTTGTCTGTCGTGGATTCAAAC</genome_strand>
        <mrna_strand>GCTTGTTTTATATATTATAATAACAGCTTTTCCCCCAAAACTTGTGTCAATATAATTGAAAAATACATTGGTGGATTCCTAGCAGAAGCAAAGAAAAAAAAATCACCAGGAGATGTTTTCTCAACTTACTTAAGCCTGGGAGGCAAGAGTTACTTGGTACATGTGTTGGTGGAAGTTAGCAAGTAGCCAGCTAGGTGCATACAAGCTGGCCAGACACCATGTGAAGGTACCAGACAATGGTAACATAATATACTAACCAGTTCAGATACATATCCACTGGTCCTTTCACCTTGAGGCTCATAATTTTGAGCTTCACTTCAGCTCACTCTTTTGATCCTTCGGTTTTTCATTTTTATCTGGATGCTCTGCAAATTTGATTACTATGACATTGACTTAAGAAAATCTGAACAAAATACTTGCATGACACAATTACTCAGCTACAAATAGACAAAAACAACTTGAAAGAGAAGGACATAAACTAAGAGTGAAGAACATTACCAGCAGCTATCATCAGTGAGGACGCATGAAGCAGTTCTTGGTCCAGTTGTTTGGAACTAATGCACTGCAGTTGACAGCAACAAGTCAGCAACCATGTATGCACATTAATGTGTGTACACACGTCAATACATATTCTCAAAAGAGTTTCAAGCCAGAGTGACACTAAAAGAAAGAGGAGCTAGAACAGAGCGAGGTTGCCAAAACGGAAGAGAGACATGAAATCATGGTAATTTTGTCAACCTTGAAATGTACTTGAGACCTTTTTTATATAGCCAAGAAAAATCCGGGGGCCGCGGCGTATGGTTAAACCTTGTTGTTTGGTGGACAATGGACCCGCTCCTCTACTCTTCTACACTTAAATACTAGGCTTTTGTCTGTCGGGGATTCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U588564" ref_strand="+" ref_description="SGN-U588564 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157348600|emb|CAO23492.1| (e_value=2e-16) unnamed; (*ATH) AT4G13650.1 (e_value=3e-17) | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr4:7938963-7942894 REVERSE | Aliases: F18A5.40, F18A5_40; (*SWP) sp|P0C7R1|PPR74_ARATH (e_value=9e-13) Pentatricopeptide repeat-containing protein At1g47580, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H50; ">
      <seq>gctagtctccgcgtctgcaatgattgccacaattggataaagtgtgtgtcgaaagttgcaaatcgggccattattgtacgggatgcatacaggtttcatcattttgcagatggtcaatgttcctgcaatgatttctggtaattggaactattgaaggttgagacgacatagtaaacttccagtgtttgagattgatgctctggatacttttatcaatagagtgcattagttccaaacaactggaccaagaactgcttcatgcgtcctcactgatgatagctgctgtaatcaaatttgcagagcatccagataaaaatgaaaaaccgaaggatcaaaagagtgagctgaagtgaagctcaaaattatgagcctcaaggtgaaaggaccagtggatatgtatctgaactggttagtatattatgttaccattgtctggtaccttcacatggtgtctggccagcttgtatgcacctagctggctacttgctaacttccaccaacacatgtaccaagtaactcttgcctcccaggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="-" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="101143" stop="99038"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100846" g_stop="100626" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100625" i_stop="99769" i_length="857">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99768" g_stop="99705" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="285" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99704" i_stop="99587" i_length="118">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99586" g_stop="99338" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="534" r_length="249" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="-" ref_id="SGN-U588564" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U588564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100846" e_stop="100626"/>
          <exon e_start="99768" e_stop="99705"/>
          <exon e_start="99586" e_stop="99338"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATCTCCGCGTCTGCAATGATTGCCACAATTGGATAAAGTGTGTGTCGAAAGTTGCAAATCGGGCCATTATTGTACGGGATGCATACAGGTTTCATCATTTTGCAGATGGTCAATGTTCCTGCAATGATTTCTGGTAATTGGAACTATTGAAGGTTGAGACGACATAGTAAACTTCCAGTGTTTGAGATTGATGCTCTGGATACTTTTATCAATAGAGGTATTAACACTTAATCTTGATGATTATAATGATTATAGCCTTGGTTCAAAAGTCAACTTAACTAAAATCCGTAATATTCATCACTTTTCAATTACCAAAAGTTCCCTATGGTATATTCCAGTTCCCGTTTTCTCAGATCTGACAAAGCTACTGATTTAATTGCTATGATTAAGCGTACCATTTTCCCTGTCAGGAAGCACAATTATAGTTAGGCGTTACTCTGATTTGTAAAAATATAAAAAGAACCTCATGCTAATGCTATCTTCTCGATAAACTCACCAGTACTCTACATTCGTTAGTTATAAAACTATGAAGCATATACTTCTATGTCAATGTTTGCATATATATTATTAGAAGTTGAAACCTCTGGAGTATGTAAGCTTCCTTCTTTTGCAGTCGTCAAAGGATGCCTGGTTTCTCAGACCATGTGTAAGCATATCCCAAGTGATCAATAAGGTTGTTTGCACTTCTCGCTCTTGGTGTAGTGGTAAGAGCAGTATCGAAATGTGTGGATTAGTTGCACATAAGGAGTTTGAATCCACGACAGACAAAAGCCTAGTATTTAAGTGTAGAAGAGTAGAGGAGCGGGTCCATTGTCCACCAAACAACAAGGTTTAACCATACGCCGCGGCCCCCGGATTTTTCTTGGCTATATAAAAAAGGTCTCAAGTACATTTCAAGGTTGACAAAATTACCATGATTTCATGTCTCTCTTCCGTTTTGGCAACCTCGCTCTGTTCTAGCTCCTCTTTCTTTTAGTGTCACTCTGGCTTGAAACTCTTTTGAGAATATGTATTGACGTGTGTACACACATTAATGTGCATACATGGTTGCTGACTTGTTGCTGTCAACTGCAGTGCATTAGTTCCAAACAACTGGACCAAGAACTGCTTCATGCGTCCTCACTGATGATAGCTGCTGGTAATGTTCTTCACTCTTAGTTTATGTCCTTCTCTTTCAAGTTGTTTTTGTCTATTTGTAGCTGAGTAATTGTGTCATGCAAGTATTTTGTTCAGATTTTCTTAAGTCAATGTCATAGTAATCAAATTTGCAGAGCATCCAGATAAAAATGAAAAACCGAAGGATCAAAAGAGTGAGCTGAAGTGAAGCTCAAAATTATGAGCCTCAAGGTGAAAGGACCAGTGGATATGTATCTGAACTGGTTAGTATATTATGTTACCATTGTCTGGTACCTTCACATGGTGTCTGGCCAGCTTGTATGCACCTAGCTGGCTACTTGCTAACTTCCACCAACACATGTACCAAGTAACTCTTGCCTCCCAGGCTT</genome_strand>
        <mrna_strand>GCTAGTCTCCGCGTCTGCAATGATTGCCACAATTGGATAAAGTGTGTGTCGAAAGTTGCAAATCGGGCCATTATTGTACGGGATGCATACAGGTTTCATCATTTTGCAGATGGTCAATGTTCCTGCAATGATTTCTGGTAATTGGAACTATTGAAGGTTGAGACGACATAGTAAACTTCCAGTGTTTGAGATTGATGCTCTGGATACTTTTATCAATAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATTAGTTCCAAACAACTGGACCAAGAACTGCTTCATGCGTCCTCACTGATGATAGCTGCTG......................................................................................................................TAATCAAATTTGCAGAGCATCCAGATAAAAATGAAAAACCGAAGGATCAAAAGAGTGAGCTGAAGTGAAGCTCAAAATTATGAGCCTCAAGGTGAAAGGACCAGTGGATATGTATCTGAACTGGTTAGTATATTATGTTACCATTGTCTGGTACCTTCACATGGTGTCTGGCCAGCTTGTATGCACCTAGCTGGCTACTTGCTAACTTCCACCAACACATGTACCAAGTAACTCTTGCCTCCCAGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U600100" ref_strand="+" ref_description="SGN-U600100 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>aagaacttttttccttgatttcaggatttcttatttgtgcctctaactgttaagctttctttctccaccaaaattgctgcaactatagagatattagtgctggtaggcatctttcagatacttatttcattgtgtacaatgggtttcttcaaaagtcatgttcactagaataatattctggaggagggggagtctatgcgatattttggtgtctgctattcttcaatgtcagtccacatatctgaaactatttgagcagagttcataatacctgaaactatttgatcaggatattgattaaattagttgtcttcgagttgcttatataacatcagattcttgttatacttgaaaaagcttataatccacagttcgttacttgacctctgtgaccacacattatttcagttattgaaatccatctaagatgattatatttgtcattgatctgcttgattagtcttgtgaagcaacaccaaataccaacacacccttcttctgtgaaggaaatttgttttttagcagtattttgttattagcttatgtggaattatcattatcttattcattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="109640" stop="110809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109940" g_stop="110509" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="573" r_length="573" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-U600100" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U600100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109940" e_stop="110509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACTTTTTTCCTTGATTTCAGGATTTCTTATTTGTGTCTCTAACTGTTAAGCTTTC---C-CCACCAAAATTGCTGCAACTATAGAGATACTAGTGCTGGTAGGCATCTTTCAGATACTTATTTCATTGTGTACAATGGGTTTTCTTCAAAAGTCATGTTCACTAGAATAATATTCTGGAGGAGGGGGACTCTATGCGATATTTTAGTGTCTGCTATTCTTCAATGTCAGTCCACATATCTGAAACTATTTGAGTAGAGTTCATAATACCTGAAACTATTTGATCAGGATATTGATTAAATTAGTTGTCTTCGAGTTACTTATATAACATCAGATTCTTGTTATACTTGAAAAAGCTTATAATCCACAGTTCGTTACTTGACTTCTTTGACCACACATTATTTCAGTTATTGAAATCCATCTAAGATGATTATATTTGTCATTGATCTGCTTGATTAGTCTTGTGAAGCACCACAAAACACCAACACACCCTTCTTCTGTGTAGGAAATTTGTTTTTTAGCAGTATTTTGTTATTAGCTTATGTGGAATTATCATTATCTAATTCATTTTC</genome_strand>
        <mrna_strand>AAGAACTTTTTTCCTTGATTTCAGGATTTCTTATTTGTGCCTCTAACTGTTAAGCTTTCTTTCTCCACCAAAATTGCTGCAACTATAGAGATATTAGTGCTGGTAGGCATCTTTCAGATACTTATTTCATTGTGTACAATGGG-TTTCTTCAAAAGTCATGTTCACTAGAATAATATTCTGGAGGAGGGGGAGTCTATGCGATATTTTGGTGTCTGCTATTCTTCAATGTCAGTCCACATATCTGAAACTATTTGAGCAGAGTTCATAATACCTGAAACTATTTGATCAGGATATTGATTAAATTAGTTGTCTTCGAGTTGCTTATATAACATCAGATTCTTGTTATACTTGAAAAAGCTTATAATCCACAGTTCGTTACTTGACCTCTGTGACCACACATTATTTCAGTTATTGAAATCCATCTAAGATGATTATATTTGTCATTGATCTGCTTGATTAGTCTTGTGAAGCAACACCAAATACCAACACACCCTTCTTCTGTGAAGGAAATTTGTTTTTTAGCAGTATTTTGTTATTAGCTTATGTGGAATTATCATTATCTTATTCATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U574375" ref_strand="+" ref_description="SGN-U574375 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157329862|emb|CAO42766.1| (e_value=5e-89) unnamed; (*ATH) AT4G21440.1 (e_value=2e-79) | Symbol: None | myb family transcription factor (MYB102), contains Pfam profile: PF00249 myb-like DNA-binding domain | chr4:11418257-11419771 REVERSE | Aliases: F18E5.60; (*SWP) sp|Q8GWP0|MYB39_ARATH (e_value=7e-47) Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39; ">
      <seq>ttgattacattcaaaaacatggatatggtaattggaggactcttccaaagaatgctgggcttcaaagatgtggaaaaagttgtaggcttcgttggactaattatctaaggccagatattaaaagaggaagattttcatttgaagaagaggagactatcattcaactccacagtattttaggcaacaagtggtctgctattgctgcacgtttacctggtagaactgataatgaaatcaagaactattggaatacgcatatcaggaaaaggcttttgagaatggggattgatccagtgacacacagtccacgtcttgatcttcttgatctttcttccattttaaaccattcaatttacaataattcatctcatcatcaaatgaacctttcaagattgttaggccatgtgcaacctttggttaatcctgaactcttgagattagctacttctcttatatcatcccaacgccaaaacacaaacaactttttaatcccaaataatcttcaagaaaatcaaataatttgccaaaaccaattgccacaaatggtccaaaataaccaaattcaagatttttcaactataagtacaaccccatgtgttccattttctagtcaagaagctcaactcatgcagccaccaattacaacaaaaatagaggatttctcatcagatcttgaaaactttggtaactcccaaaataattgtcaagttattaatgatgatgagtggcaattaagcaatggtgtaacggatgattattttcctttacaaaactatgggtactatgatcctttaacgtccgatgaaaacaacaacaattttaatctccagtcagttgttttgttgaatttattgaccccttcatcaagtcctacgccattgaattcaaattcaactttcttcaacaatagcagcagcccaacttctgaagatgaaagagatagcttctgcagcaacatgttgaactttgataatattcccaaatatttgggatactaactaaagaatttatgtaatttttacgcttttttttttttaaaggaaccaaacaaacagttcgaaaagaggtgttttattttttttttttacctctgagcttttggacatgttgttgtttcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0031A21-8P2Gw/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C02HBa0031A21.2" temp_strand="+" temp_description="C02HBa0031A21.2  AC215365.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0031A21 sequenced_by:kribb upload_account_name:korea">
        <position start="122635" stop="124600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122935" g_stop="122991" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122992" i_stop="123088" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="123089" g_stop="123218" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="187" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="123219" i_stop="123371" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123372" g_stop="124300" g_length="929"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="1120" r_length="933" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0031A21.2" gen_strand="+" ref_id="SGN-U574375" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>1116</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0031A21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U574375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122935" e_stop="122991"/>
          <exon e_start="123089" e_stop="123218"/>
          <exon e_start="123372" e_stop="124300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTACATTCAAAAACATGGATATGGTAATTGGAGGACTCTTCCAAAGAATGCTGGTATTTATTTTTCTTCTTACTATACTATTTTCTTGTATTAATTTATACTTTTTTTTAAGTTGTATTATTAATGCTTTAATGTGTGTGTATATTTTAGGGCTTCAAAGATGTGGAAAAAGTTGTAGGCTTCGTTGGACTAATTATCTAAGGCCAGATATTAAAAGAGGAAGATTTTCATTTGAAGAAGAGGAGACTATCATTCAACTCCACAGTATTTTAGGCAACAAGTAAGTTTATTTATTTTATTTATTATTAATGGGGTCGTAATAATATAGTACTCATTTTTTCTCCATAGGTTTGGACTTTTTTATCAATGTATTTTGTCATGTTCCTTAGAGATTGAAACTAATTTGTCATGTGTTTCTTTTTTTTTGATTCAGGTGGTCTGCTATTGCTGCACGTTTACCTGGTAGAACTGATAATGAAATCAAGAACTATTGGAATACGCATATCAGGAAAAGGCTTTTGAGAATGGGGATTGATCCAGTGACACACAGTCCACGTCTTGATCTTCTTGATCTTTCTTCCATTTTAAACCATTCAATTTACAATAATTCATCTCATCATCAAATGAACCTTTCAAGATTGTTAGGCCATGTGCAACCTTTGGTTAATCCTGAACTCTTGAGATTAGCTACTTCTCTTATATCATCCCAACGCCAAAACACAAACAACTTTTTAATCCCAAATAATCTTCAAGAAAATCAAATAATTTGCCAAAACCAATTGCCACAAATGGTCCAAAATAACCAAATTCAAGATTTTTCAACTATAAGTACAACCCCATGTGTTCCATTTTCTAGTCATGAAGCTCAACTCATGCAGCCACCAATTACAACAAAAATAGAGGATTTCTCATCAGATCTTGAAAACTTTGGTAACTCACAAAATAATTGTCAAGTTATTAATGATGATGAGTGGCAATTAAGCAATGGTGTAACGGATGATTATTTTCCTTTACAAAACTATGGGTACTATGATCCTCTAACGTCCGATGAAAACAACAACAATTTTAATCTCCAGTCAGTTGTTTTGTCGAATTTATCGACACCTTCATCAAGTCCTACGCCATTGAATTCAAATTCAACTTACTTCAACAATAGCAGCAGCACAACTACTGAAGATGAAAGAGATAGCTACTGCAGCAACATGTTGAACTTTGATAATATT-CCAAATATCTGGGATACT-ACTAATGAATTTATGTAATTTTTACGCTTTTTTTTTTTTAAAGGAA-CAAACAAACAGTTCG-AAAGAGGTGTTTTATTTTTTTTTTTTACCTCTGAGCTTTTGGACATGTTGTTGTTTCCTG</genome_strand>
        <mrna_strand>TTGATTACATTCAAAAACATGGATATGGTAATTGGAGGACTCTTCCAAAGAATGCTG.................................................................................................GGCTTCAAAGATGTGGAAAAAGTTGTAGGCTTCGTTGGACTAATTATCTAAGGCCAGATATTAAAAGAGGAAGATTTTCATTTGAAGAAGAGGAGACTATCATTCAACTCCACAGTATTTTAGGCAACAA.........................................................................................................................................................GTGGTCTGCTATTGCTGCACGTTTACCTGGTAGAACTGATAATGAAATCAAGAACTATTGGAATACGCATATCAGGAAAAGGCTTTTGAGAATGGGGATTGATCCAGTGACACACAGTCCACGTCTTGATCTTCTTGATCTTTCTTCCATTTTAAACCATTCAATTTACAATAATTCATCTCATCATCAAATGAACCTTTCAAGATTGTTAGGCCATGTGCAACCTTTGGTTAATCCTGAACTCTTGAGATTAGCTACTTCTCTTATATCATCCCAACGCCAAAACACAAACAACTTTTTAATCCCAAATAATCTTCAAGAAAATCAAATAATTTGCCAAAACCAATTGCCACAAATGGTCCAAAATAACCAAATTCAAGATTTTTCAACTATAAGTACAACCCCATGTGTTCCATTTTCTAGTCAAGAAGCTCAACTCATGCAGCCACCAATTACAACAAAAATAGAGGATTTCTCATCAGATCTTGAAAACTTTGGTAACTCCCAAAATAATTGTCAAGTTATTAATGATGATGAGTGGCAATTAAGCAATGGTGTAACGGATGATTATTTTCCTTTACAAAACTATGGGTACTATGATCCTTTAACGTCCGATGAAAACAACAACAATTTTAATCTCCAGTCAGTTGTTTTGTTGAATTTATTGACCCCTTCATCAAGTCCTACGCCATTGAATTCAAATTCAACTTTCTTCAACAATAGCAGCAGCCCAACTTCTGAAGATGAAAGAGATAGCTTCTGCAGCAACATGTTGAACTTTGATAATATTCCCAAATATTTGGGATACTAACTAAAGAATTTATGTAATTTTTACGCTTTTTTTTTTTTAAAGGAACCAAACAAACAGTTCGAAAAGAGGTGTTTTATTTTTTTTTTTTACCTCTGAGCTTTTGGACATGTTGTTGTTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>20</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="14959" PGL_stop="17546"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14959" e_stop="15070"/>
            <exon e_start="15222" e_stop="15355"/>
            <exon e_start="16595" e_stop="16874"/>
            <exon e_start="17133" e_stop="17339"/>
            <exon e_start="17482" e_stop="17546"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.988" e_score="0.971"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14959" e_stop="15070" e_length="112"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15071" i_stop="15221" i_length="151"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15222" e_stop="15355" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.916">
            <gDNA_intron_boundary i_start="15356" i_stop="16594" i_length="1239"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16595" e_stop="16874" e_length="280"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.974">
            <gDNA_intron_boundary i_start="16875" i_stop="17132" i_length="258"/>
          </intron>
          <exon e_serial="4" e_score="0.971">
            <gDNA_exon_boundary e_start="17133" e_stop="17339" e_length="207"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.988">
            <gDNA_intron_boundary i_start="17340" i_stop="17481" i_length="142"/>
          </intron>
          <exon e_serial="5" e_score="0.985">
            <gDNA_exon_boundary e_start="17482" e_stop="17546" e_length="65"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14959" stop="15070"/>
              <exon start="15222" stop="15355"/>
              <exon start="16595" stop="16874"/>
              <exon start="17133" stop="17339"/>
              <exon start="17482" stop="17546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582810" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGGAAAAAAAAAAGAAGCCTCAACCACGTTCCCTTCTTCTCATTGATTCTTCTCCATCTTCACGTTCTCTTTCAACAACTCACACCACGTTCGCAACAGCAACTCTCTCAG : GTGAAGAGAAGGTTGCTAGGTGAGATCGCGTAAGTTGAACGCAAAATGCAGAGAGTAACGGTGATTGAGAGATTTTCTAAAACTTTCCGTGATAATCCTTCCCTTTCTAAGCTCCTCATTGTTTTCACTGTCAG : TGGTGGAGGTCTTGTGGCATACTCCGAGGCAGGAAAATCGAATGACAATTCAAATGCTGGAGCATTGGTTGAGGCCAACAACAGAAAAAAGAAAGTTGTTGTCCTTGGAACTGGTTGGGCTGGAACCAGTTTCTTGAAGAATCTGAAGGATCCTTCATATGATGTCCAAGTAATATCTCCAAGAAATTACTTTGCATTCACCCCTTTGCTTCCAAGTGTTACATGTGGCACGGTAGAAAGTCGCAGTGTTGTTGAACCAATTCGTAACATTATCAGAAAG : AGATATGCAGAGGCCTATTACTGGGAAGCTGAATGTATCAAAATTGATCCAGAAAACAAGAAGGTATATTGTCGATCAAATCTAAGCACCAACGGAAATGGGAAGGAAGAGTTTGCAGTAGATTATGACTATCTTGTCATTGCCACTGGAGCCCGTGTAAATACATTCAACATTCCTGGTGTTGAAGAGAACACCTTCTTCTTGAAG : GAAGTAGAAGATGCTCAAAAGATCCGTAGAACTGTTATTGACTGTTTTGAGAAAGCAAGTCTGCC</gDNA_template>
            <first_frame> R  E  K  K  K  K  P  Q  P  R  S  L  L  L  I  D  S  S  P  S  S  R  S  L  S  T  T  H  T  T  F  A  T  A  T  L  S   : G  E  E  K  V  A  R  *  D  R  V  S  *  T  Q  N  A  E  S  N  G  D  *  E  I  F  *  N  F  P  *  *  S  F  P  F  *  A  P  H  C  F  H  C  Q  :  W  W  R  S  C  G  I  L  R  G  R  K  I  E  *  Q  F  K  C  W  S  I  G  *  G  Q  Q  Q  K  K  E  S  C  C  P  W  N  W  L  G  W  N  Q  F  L  E  E  S  E  G  S  F  I  *  C  P  S  N  I  S  K  K  L  L  C  I  H  P  F  A  S  K  C  Y  M  W  H  G  R  K  S  Q  C  C  *  T  N  S  *  H  Y  Q  K   : E  I  C  R  G  L  L  L  G  S  *  M  Y  Q  N  *  S  R  K  Q  E  G  I  L  S  I  K  S  K  H  Q  R  K  W  E  G  R  V  C  S  R  L  *  L  S  C  H  C  H  W  S  P  C  K  Y  I  Q  H  S  W  C  *  R  E  H  L  L  L  E   : G  S  R  R  C  S  K  D  P  *  N  C  Y  *  L  F  *  E  S  K  S  A </first_frame>
            <second_frame>  G  K  K  K  R  S  L  N  H  V  P  F  F  S  L  I  L  L  H  L  H  V  L  F  Q  Q  L  T  P  R  S  Q  Q  Q  L  S  Q  :  V  K  R  R  L  L  G  E  I  A  *  V  E  R  K  M  Q  R  V  T  V  I  E  R  F  S  K  T  F  R  D  N  P  S  L  S  K  L  L  I  V  F  T  V  S :   G  G  G  L  V  A  Y  S  E  A  G  K  S  N  D  N  S  N  A  G  A  L  V  E  A  N  N  R  K  K  K  V  V  V  L  G  T  G  W  A  G  T  S  F  L  K  N  L  K  D  P  S  Y  D  V  Q  V  I  S  P  R  N  Y  F  A  F  T  P  L  L  P  S  V  T  C  G  T  V  E  S  R  S  V  V  E  P  I  R  N  I  I  R  K  :  R  Y  A  E  A  Y  Y  W  E  A  E  C  I  K  I  D  P  E  N  K  K  V  Y  C  R  S  N  L  S  T  N  G  N  G  K  E  E  F  A  V  D  Y  D  Y  L  V  I  A  T  G  A  R  V  N  T  F  N  I  P  G  V  E  E  N  T  F  F  L  K  :  E  V  E  D  A  Q  K  I  R  R  T  V  I  D  C  F  E  K  A  S  L   </second_frame>
            <third_frame>   G  K  K  K  E  A  S  T  T  F  P  S  S  H  *  F  F  S  I  F  T  F  S  F  N  N  S  H  H  V  R  N  S  N  S  L  R :   *  R  E  G  C  *  V  R  S  R  K  L  N  A  K  C  R  E  *  R  *  L  R  D  F  L  K  L  S  V  I  I  L  P  F  L  S  S  S  L  F  S  L  S   : V  V  E  V  L  W  H  T  P  R  Q  E  N  R  M  T  I  Q  M  L  E  H  W  L  R  P  T  T  E  K  R  K  L  L  S  L  E  L  V  G  L  E  P  V  S  *  R  I  *  R  I  L  H  M  M  S  K  *  Y  L  Q  E  I  T  L  H  S  P  L  C  F  Q  V  L  H  V  A  R  *  K  V  A  V  L  L  N  Q  F  V  T  L  S  E  R :   D  M  Q  R  P  I  T  G  K  L  N  V  S  K  L  I  Q  K  T  R  R  Y  I  V  D  Q  I  *  A  P  T  E  M  G  R  K  S  L  Q  *  I  M  T  I  L  S  L  P  L  E  P  V  *  I  H  S  T  F  L  V  L  K  R  T  P  S  S  *  R :   K  *  K  M  L  K  R  S  V  E  L  L  L  T  V  L  R  K  Q  V  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15255" stop="15355"/>
                    <exon start="16595" stop="16874"/>
                    <exon start="17133" stop="17339"/>
                    <exon start="17482" stop="17544"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>651</number_coding_nucleotides>
                  <number_encoded_amino_acids>217</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VERKMQRVTVIERFSKTFRDNPSLSKLLIVFTVSGGGLVAYSEAGKSNDNSNAGALVEANNRKKKVVVLGTGWAGTSFLKNLKDPSYDVQVISPRNYFAFTPLLPSVTCGTVESRSVVEPIRNIIRKRYAEAYYWEAECIKIDPENKKVYCRSNLSTNGNGKEEFAVDYDYLVIATGARVNTFNIPGVEENTFFLKEVEDAQKIRRTVIDCFEKASL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="17663" PGL_stop="20909"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17663" e_stop="17732"/>
            <exon e_start="18637" e_stop="18856"/>
            <exon e_start="18950" e_stop="19054"/>
            <exon e_start="19485" e_stop="19757"/>
            <exon e_start="19857" e_stop="19978"/>
            <exon e_start="20264" e_stop="20383"/>
            <exon e_start="20477" e_stop="20909"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="0.986"/>
          <exon-intron don_prob="0.951" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.872" acc_prob="0.905" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="17663" e_stop="17732" e_length="70"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="17733" i_stop="18636" i_length="904"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18637" e_stop="18856" e_length="220"/>
          </exon>
          <intron i_serial="2" don_prob="0.951" acc_prob="0.999">
            <gDNA_intron_boundary i_start="18857" i_stop="18949" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18950" e_stop="19054" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="19055" i_stop="19484" i_length="430"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19485" e_stop="19757" e_length="273"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.933">
            <gDNA_intron_boundary i_start="19758" i_stop="19856" i_length="99"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19857" e_stop="19978" e_length="122"/>
          </exon>
          <intron i_serial="5" don_prob="0.977" acc_prob="0.998">
            <gDNA_intron_boundary i_start="19979" i_stop="20263" i_length="285"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="20264" e_stop="20383" e_length="120"/>
          </exon>
          <intron i_serial="6" don_prob="0.872" acc_prob="0.905">
            <gDNA_intron_boundary i_start="20384" i_stop="20476" i_length="93"/>
          </intron>
          <exon e_serial="7" e_score="0.991">
            <gDNA_exon_boundary e_start="20477" e_stop="20909" e_length="433"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17663" stop="17732"/>
              <exon start="18637" stop="18856"/>
              <exon start="18950" stop="19054"/>
              <exon start="19485" stop="19757"/>
              <exon start="19857" stop="19978"/>
              <exon start="20264" stop="20383"/>
              <exon start="20477" stop="20909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576144" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCTGTACCCTAAGGTCAAAGATCTGGTGAAGATAACACTTCTTGAGGCAACAGATCATATTTTGAACAT : GTTTGACAAAAGAATTACTGCTTTTGCTGAAGAAAAATTCCACAGAGATGGTATTGATGTGAAAACAGGGTCAATGGTTGTGAAGGTAGGAGAAAAAGAAATTTCTACCAAGGATGTTAAGCGTGGAGAAATAACTTCTATGCCTTATGGAATGGCTGTCTGGTCTACTGGTATTGGAACTCGTCCAGTAATTATGGAGTTTATGAAGCACATTGGTCAG : GGAAGCAGACGAGTGTTAGCAACCGATGAGTGGCTGCGTGTTGAGGGACAGGAGAACGTATATGCACTTGGTGACTGTGCAACAATCAACCAGCGCAAAGTCATG : GAAGATATTGCTGCTATATTTCAAAAAGCAGACAAAGATAACTCTGGAACACTTACAGTCAAAGAATTTCAGGAAGTCCTTAATGACATATGTGAAAGATACCCGCAGGTGGAGCTTTACTTGAAAAATAAAAAAATGAGTAATCTTGTCGATCTCTTGAAAGAATCGAAAGGTAATGGTGTTAAAGAGTCGATTGAGGTGGACATTGAAGAATTTAAATCTGCTCTGTCCCAAGTGGATACTGATATGAAGAATCTTCCAGCAACAGCTCAG : GTTGCATCTCAGCAAGGTGTCTACTTAGCTAAATGCTTTAATCGTATGGAGGAATGTGAAAAAAATCCGGAAGGTCCTCTTCGGTTTAGAGGAGAAGGCCGCCATCGCTTTCACCCATTCAG : GTACCGACATTTGGGACAGTTTGCACCTTTGGGAGGAGAGCAAACAGCAGCACAACTTCCAGGAGATTGGGTTTCAATTGGTCATAGCAGTCAGTGGCTATGGTATTCTGTGTATGCTAG : CAAACAAGTCAGTTGGCGTACAAGGGCATTGGTTGTCTCTGACTGGGTAAGACGGTTCATATTTGGAAGAGACTCGAGCCAGATTTAAGGTGTTACGCCCCAGTGGATTTATCTTGAAATTCCATTAGGCTGTTACCAAAAGTTTTTTGATGTGAATCCTAACGGATTTGTTTGTTTAATTCTTTTACCAAACAACTTGGCATTGGTCGTTTGTGGGTTTCCTGCCATCACAATTTTGCAGCTACACGAACATAGAGAACCCAATTTTCTATAATTGCATCATAATAAAGGTGAAATGAACATCTATAGGAGGGATGTTAAATTGTAATTTGAATTATTCCATATATTGCTCAGGTGTTCTATTTTGAATAACATCCGGCTAAGCCTTTAATGTCACAATGTTTAATGGAGTATAAGTTTTGGTATTTTTTGG</gDNA_template>
            <first_frame> G  C  T  L  R  S  K  I  W  *  R  *  H  F  L  R  Q  Q  I  I  F  *  T   : C  L  T  K  E  L  L  L  L  L  K  K  N  S  T  E  M  V  L  M  *  K  Q  G  Q  W  L  *  R  *  E  K  K  K  F  L  P  R  M  L  S  V  E  K  *  L  L  C  L  M  E  W  L  S  G  L  L  V  L  E  L  V  Q  *  L  W  S  L  *  S  T  L  V  R :   E  A  D  E  C  *  Q  P  M  S  G  C  V  L  R  D  R  R  T  Y  M  H  L  V  T  V  Q  Q  S  T  S  A  K  S  W :   K  I  L  L  L  Y  F  K  K  Q  T  K  I  T  L  E  H  L  Q  S  K  N  F  R  K  S  L  M  T  Y  V  K  D  T  R  R  W  S  F  T  *  K  I  K  K  *  V  I  L  S  I  S  *  K  N  R  K  V  M  V  L  K  S  R  L  R  W  T  L  K  N  L  N  L  L  C  P  K  W  I  L  I  *  R  I  F  Q  Q  Q  L  R :   L  H  L  S  K  V  S  T  *  L  N  A  L  I  V  W  R  N  V  K  K  I  R  K  V  L  F  G  L  E  E  K  A  A  I  A  F  T  H  S   : G  T  D  I  W  D  S  L  H  L  W  E  E  S  K  Q  Q  H  N  F  Q  E  I  G  F  Q  L  V  I  A  V  S  G  Y  G  I  L  C  M  L   : A  N  K  S  V  G  V  Q  G  H  W  L  S  L  T  G  *  D  G  S  Y  L  E  E  T  R  A  R  F  K  V  L  R  P  S  G  F  I  L  K  F  H  *  A  V  T  K  S  F  L  M  *  I  L  T  D  L  F  V  *  F  F  Y  Q  T  T  W  H  W  S  F  V  G  F  L  P  S  Q  F  C  S  Y  T  N  I  E  N  P  I  F  Y  N  C  I  I  I  K  V  K  *  T  S  I  G  G  M  L  N  C  N  L  N  Y  S  I  Y  C  S  G  V  L  F  *  I  T  S  G  *  A  F  N  V  T  M  F  N  G  V  *  V  L  V  F  F   </first_frame>
            <second_frame>  A  V  P  *  G  Q  R  S  G  E  D  N  T  S  *  G  N  R  S  Y  F  E  H  :  V  *  Q  K  N  Y  C  F  C  *  R  K  I  P  Q  R  W  Y  *  C  E  N  R  V  N  G  C  E  G  R  R  K  R  N  F  Y  Q  G  C  *  A  W  R  N  N  F  Y  A  L  W  N  G  C  L  V  Y  W  Y  W  N  S  S  S  N  Y  G  V  Y  E  A  H  W  S   : G  K  Q  T  S  V  S  N  R  *  V  A  A  C  *  G  T  G  E  R  I  C  T  W  *  L  C  N  N  Q  P  A  Q  S  H   : G  R  Y  C  C  Y  I  S  K  S  R  Q  R  *  L  W  N  T  Y  S  Q  R  I  S  G  S  P  *  *  H  M  *  K  I  P  A  G  G  A  L  L  E  K  *  K  N  E  *  S  C  R  S  L  E  R  I  E  R  *  W  C  *  R  V  D  *  G  G  H  *  R  I  *  I  C  S  V  P  S  G  Y  *  Y  E  E  S  S  S  N  S  S   : G  C  I  S  A  R  C  L  L  S  *  M  L  *  S  Y  G  G  M  *  K  K  S  G  R  S  S  S  V  *  R  R  R  P  P  S  L  S  P  I  Q  :  V  P  T  F  G  T  V  C  T  F  G  R  R  A  N  S  S  T  T  S  R  R  L  G  F  N  W  S  *  Q  S  V  A  M  V  F  C  V  C  *  :  Q  T  S  Q  L  A  Y  K  G  I  G  C  L  *  L  G  K  T  V  H  I  W  K  R  L  E  P  D  L  R  C  Y  A  P  V  D  L  S  *  N  S  I  R  L  L  P  K  V  F  *  C  E  S  *  R  I  C  L  F  N  S  F  T  K  Q  L  G  I  G  R  L  W  V  S  C  H  H  N  F  A  A  T  R  T  *  R  T  Q  F  S  I  I  A  S  *  *  R  *  N  E  H  L  *  E  G  C  *  I  V  I  *  I  I  P  Y  I  A  Q  V  F  Y  F  E  *  H  P  A  K  P  L  M  S  Q  C  L  M  E  Y  K  F  W  Y  F  L  </second_frame>
            <third_frame>   L  Y  P  K  V  K  D  L  V  K  I  T  L  L  E  A  T  D  H  I  L  N  M :   F  D  K  R  I  T  A  F  A  E  E  K  F  H  R  D  G  I  D  V  K  T  G  S  M  V  V  K  V  G  E  K  E  I  S  T  K  D  V  K  R  G  E  I  T  S  M  P  Y  G  M  A  V  W  S  T  G  I  G  T  R  P  V  I  M  E  F  M  K  H  I  G  Q  :  G  S  R  R  V  L  A  T  D  E  W  L  R  V  E  G  Q  E  N  V  Y  A  L  G  D  C  A  T  I  N  Q  R  K  V  M  :  E  D  I  A  A  I  F  Q  K  A  D  K  D  N  S  G  T  L  T  V  K  E  F  Q  E  V  L  N  D  I  C  E  R  Y  P  Q  V  E  L  Y  L  K  N  K  K  M  S  N  L  V  D  L  L  K  E  S  K  G  N  G  V  K  E  S  I  E  V  D  I  E  E  F  K  S  A  L  S  Q  V  D  T  D  M  K  N  L  P  A  T  A  Q  :  V  A  S  Q  Q  G  V  Y  L  A  K  C  F  N  R  M  E  E  C  E  K  N  P  E  G  P  L  R  F  R  G  E  G  R  H  R  F  H  P  F  R :   Y  R  H  L  G  Q  F  A  P  L  G  G  E  Q  T  A  A  Q  L  P  G  D  W  V  S  I  G  H  S  S  Q  W  L  W  Y  S  V  Y  A  S :   K  Q  V  S  W  R  T  R  A  L  V  V  S  D  W  V  R  R  F  I  F  G  R  D  S  S  Q  I  *  G  V  T  P  Q  W  I  Y  L  E  I  P  L  G  C  Y  Q  K  F  F  D  V  N  P  N  G  F  V  C  L  I  L  L  P  N  N  L  A  L  V  V  C  G  F  P  A  I  T  I  L  Q  L  H  E  H  R  E  P  N  F  L  *  L  H  H  N  K  G  E  M  N  I  Y  R  R  D  V  K  L  *  F  E  L  F  H  I  L  L  R  C  S  I  L  N  N  I  R  L  S  L  *  C  H  N  V  *  W  S  I  S  F  G  I  F  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17665" stop="17732"/>
                    <exon start="18637" stop="18856"/>
                    <exon start="18950" stop="19054"/>
                    <exon start="19485" stop="19757"/>
                    <exon start="19857" stop="19978"/>
                    <exon start="20264" stop="20383"/>
                    <exon start="20477" stop="20564"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>993</number_coding_nucleotides>
                  <number_encoded_amino_acids>331</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYPKVKDLVKITLLEATDHILNMFDKRITAFAEEKFHRDGIDVKTGSMVVKVGEKEISTKDVKRGEITSMPYGMAVWSTGIGTRPVIMEFMKHIGQGSRRVLATDEWLRVEGQENVYALGDCATINQRKVMEDIAAIFQKADKDNSGTLTVKEFQEVLNDICERYPQVELYLKNKKMSNLVDLLKESKGNGVKESIEVDIEEFKSALSQVDTDMKNLPATAQVASQQGVYLAKCFNRMEECEKNPEGPLRFRGEGRHRFHPFRYRHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVVSDWVRRFIFGRDSSQI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="35333" PGL_stop="36408"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35333" e_stop="35350"/>
            <exon e_start="35876" e_stop="36408"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.812" acc_prob="0.883" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35333" e_stop="35350" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="0.812" acc_prob="0.883">
            <gDNA_intron_boundary i_start="35351" i_stop="35875" i_length="525"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="35876" e_stop="36408" e_length="533"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35333" stop="35350"/>
              <exon start="35876" stop="36408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575983" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCACTCTCAAGACTGAG : TTCAGTTTTTCTTGAGATGGAAATGAATCCGAGCTTGAAAAAACCGAGGGAATCTGTAGATTTATCGAAAATGTCGGAGTTATCTCAGTCAGCATTCCCAGATGAGGTGTTGGAGAAGGTGTTGTCTCTTGTTCAGTCTCATAAAGACAGAAATTCAGCTTCATTGGTGTGCAAAGATTGGTATAATGCAGAGCGTTGGACAAGAACTAAGCTGTTTATTGGAAATTGCTATTCAGTTACTCCTGAGATTGTAGCAAGAAGATTTCCCAAGATTAAGAGTGTTACCCTTAAGGGGAAACCAAGATTTTCTGACTTTAATTTGGTACCTGAGAATTGGGGTGCTGATATTCAGGCTTGGCTTGATGTTTTTGCCAAAGTTTACCCCTTTCTTGAGGAGTTGAGATTGAAAAGAATGGCTGTTACTGATGAGAGTTTGGAGTTTTTGGCAAAATCATTTCTTGGATTTAAGGCTCTGTCATTGTTGAGTTGTGACGGTTTTAGCACTGATGGGATCGGTAGCATTGCTGCTCACT</gDNA_template>
            <first_frame> T  T  L  K  T  E  :  F  S  F  S  *  D  G  N  E  S  E  L  E  K  T  E  G  I  C  R  F  I  E  N  V  G  V  I  S  V  S  I  P  R  *  G  V  G  E  G  V  V  S  C  S  V  S  *  R  Q  K  F  S  F  I  G  V  Q  R  L  V  *  C  R  A  L  D  K  N  *  A  V  Y  W  K  L  L  F  S  Y  S  *  D  C  S  K  K  I  S  Q  D  *  E  C  Y  P  *  G  E  T  K  I  F  *  L  *  F  G  T  *  E  L  G  C  *  Y  S  G  L  A  *  C  F  C  Q  S  L  P  L  S  *  G  V  E  I  E  K  N  G  C  Y  *  *  E  F  G  V  F  G  K  I  I  S  W  I  *  G  S  V  I  V  E  L  *  R  F  *  H  *  W  D  R  *  H  C  C  S   </first_frame>
            <second_frame>  P  L  S  R  L  S :   S  V  F  L  E  M  E  M  N  P  S  L  K  K  P  R  E  S  V  D  L  S  K  M  S  E  L  S  Q  S  A  F  P  D  E  V  L  E  K  V  L  S  L  V  Q  S  H  K  D  R  N  S  A  S  L  V  C  K  D  W  Y  N  A  E  R  W  T  R  T  K  L  F  I  G  N  C  Y  S  V  T  P  E  I  V  A  R  R  F  P  K  I  K  S  V  T  L  K  G  K  P  R  F  S  D  F  N  L  V  P  E  N  W  G  A  D  I  Q  A  W  L  D  V  F  A  K  V  Y  P  F  L  E  E  L  R  L  K  R  M  A  V  T  D  E  S  L  E  F  L  A  K  S  F  L  G  F  K  A  L  S  L  L  S  C  D  G  F  S  T  D  G  I  G  S  I  A  A  H  </second_frame>
            <third_frame>   H  S  Q  D  *   : V  Q  F  F  L  R  W  K  *  I  R  A  *  K  N  R  G  N  L  *  I  Y  R  K  C  R  S  Y  L  S  Q  H  S  Q  M  R  C  W  R  R  C  C  L  L  F  S  L  I  K  T  E  I  Q  L  H  W  C  A  K  I  G  I  M  Q  S  V  G  Q  E  L  S  C  L  L  E  I  A  I  Q  L  L  L  R  L  *  Q  E  D  F  P  R  L  R  V  L  P  L  R  G  N  Q  D  F  L  T  L  I  W  Y  L  R  I  G  V  L  I  F  R  L  G  L  M  F  L  P  K  F  T  P  F  L  R  S  *  D  *  K  E  W  L  L  L  M  R  V  W  S  F  W  Q  N  H  F  L  D  L  R  L  C  H  C  *  V  V  T  V  L  A  L  M  G  S  V  A  L  L  L  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35334" stop="35350"/>
                    <exon start="35876" stop="36407"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLSRLSSVFLEMEMNPSLKKPRESVDLSKMSELSQSAFPDEVLEKVLSLVQSHKDRNSASLVCKDWYNAERWTRTKLFIGNCYSVTPEIVARRFPKIKSVTLKGKPRFSDFNLVPENWGADIQAWLDVFAKVYPFLEELRLKRMAVTDESLEFLAKSFLGFKALSLLSCDGFSTDGIGSIAAH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="39237" PGL_stop="40070"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39237" e_stop="40070"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="39237" e_stop="40070" e_length="834"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39237" stop="40070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580825" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAATAGTGCATAACTGCCCCAATTTCACCCATTTTCGTCTCTGTATAATGAGCCCTGGCCAGCCAGATTACTTGACAAATGAACCCATGGATGAGGCATTTGGTGCAGTGGTCAAGACTTGTAAAAAGCTCCAGAGGCTTTCTGTTTCTGGACGGTTGACTGACCTGACCTTTGAGTATATTGGGAAGTATGCCAAAAACCTTGAGACACTTTCAGTTGCTTTTTCTGGCGGCACTGACTGGGGTATGCAGTGCGTGCTCGACGGCTGTTCTAAGCTGAGGAAGCTGGAGATAAGGGATTCTCCATTTGGAAATGCAGCACTTCTTTCTGGAATGGGGAAGTATGAATCAATGCGGTGTCTTTGGATGTCAGCTTGCAGGGTCACCATGAATGGTTGTAGAATACTTGCACGAGAGAGACCTAGGTTGAATGTCGAGGTAATCAAAGATGAGCACAGCGATGACTATGCTGATAAATTATACGTCTATCGTTCTGTAGCAGGGCCACGAAGGGATGCCCCACCTTTTGTTGTAACTCTCTAGTACAAAGTAACAGGAACTTCGGTAAGCTCCTTCCCTTACTCTCCCTCTGTCCTATGCTCGCCAAAATAGCGTGGAGTGGATAGATGATATGCTGATAATGCAGAGTTTTATTTTTATCTGTAGGCATGCACTAGGATACCCTTTTATTTCAGCTAGTTTTATCTGCTACAACATGCATGATGTTCGTAAAGGTGGACGAGAGAAAGTAAGTGAACAATGGATTAAAGGAATATCTCTCCTTATGCTGCATTTACTATGTTTTACTTGAAGAAGCTTGAAATTTTCAAGGAA</gDNA_template>
            <first_frame> T  I  V  H  N  C  P  N  F  T  H  F  R  L  C  I  M  S  P  G  Q  P  D  Y  L  T  N  E  P  M  D  E  A  F  G  A  V  V  K  T  C  K  K  L  Q  R  L  S  V  S  G  R  L  T  D  L  T  F  E  Y  I  G  K  Y  A  K  N  L  E  T  L  S  V  A  F  S  G  G  T  D  W  G  M  Q  C  V  L  D  G  C  S  K  L  R  K  L  E  I  R  D  S  P  F  G  N  A  A  L  L  S  G  M  G  K  Y  E  S  M  R  C  L  W  M  S  A  C  R  V  T  M  N  G  C  R  I  L  A  R  E  R  P  R  L  N  V  E  V  I  K  D  E  H  S  D  D  Y  A  D  K  L  Y  V  Y  R  S  V  A  G  P  R  R  D  A  P  P  F  V  V  T  L  *  Y  K  V  T  G  T  S  V  S  S  F  P  Y  S  P  S  V  L  C  S  P  K  *  R  G  V  D  R  *  Y  A  D  N  A  E  F  Y  F  Y  L  *  A  C  T  R  I  P  F  Y  F  S  *  F  Y  L  L  Q  H  A  *  C  S  *  R  W  T  R  E  S  K  *  T  M  D  *  R  N  I  S  P  Y  A  A  F  T  M  F  Y  L  K  K  L  E  I  F  K  E </first_frame>
            <second_frame>  Q  *  C  I  T  A  P  I  S  P  I  F  V  S  V  *  *  A  L  A  S  Q  I  T  *  Q  M  N  P  W  M  R  H  L  V  Q  W  S  R  L  V  K  S  S  R  G  F  L  F  L  D  G  *  L  T  *  P  L  S  I  L  G  S  M  P  K  T  L  R  H  F  Q  L  L  F  L  A  A  L  T  G  V  C  S  A  C  S  T  A  V  L  S  *  G  S  W  R  *  G  I  L  H  L  E  M  Q  H  F  F  L  E  W  G  S  M  N  Q  C  G  V  F  G  C  Q  L  A  G  S  P  *  M  V  V  E  Y  L  H  E  R  D  L  G  *  M  S  R  *  S  K  M  S  T  A  M  T  M  L  I  N  Y  T  S  I  V  L  *  Q  G  H  E  G  M  P  H  L  L  L  *  L  S  S  T  K  *  Q  E  L  R  *  A  P  S  L  T  L  P  L  S  Y  A  R  Q  N  S  V  E  W  I  D  D  M  L  I  M  Q  S  F  I  F  I  C  R  H  A  L  G  Y  P  F  I  S  A  S  F  I  C  Y  N  M  H  D  V  R  K  G  G  R  E  K  V  S  E  Q  W  I  K  G  I  S  L  L  M  L  H  L  L  C  F  T  *  R  S  L  K  F  S  R   </second_frame>
            <third_frame>   N  S  A  *  L  P  Q  F  H  P  F  S  S  L  Y  N  E  P  W  P  A  R  L  L  D  K  *  T  H  G  *  G  I  W  C  S  G  Q  D  L  *  K  A  P  E  A  F  C  F  W  T  V  D  *  P  D  L  *  V  Y  W  E  V  C  Q  K  P  *  D  T  F  S  C  F  F  W  R  H  *  L  G  Y  A  V  R  A  R  R  L  F  *  A  E  E  A  G  D  K  G  F  S  I  W  K  C  S  T  S  F  W  N  G  E  V  *  I  N  A  V  S  L  D  V  S  L  Q  G  H  H  E  W  L  *  N  T  C  T  R  E  T  *  V  E  C  R  G  N  Q  R  *  A  Q  R  *  L  C  *  *  I  I  R  L  S  F  C  S  R  A  T  K  G  C  P  T  F  C  C  N  S  L  V  Q  S  N  R  N  F  G  K  L  L  P  L  L  S  L  C  P  M  L  A  K  I  A  W  S  G  *  M  I  C  *  *  C  R  V  L  F  L  S  V  G  M  H  *  D  T  L  L  F  Q  L  V  L  S  A  T  T  C  M  M  F  V  K  V  D  E  R  K  *  V  N  N  G  L  K  E  Y  L  S  L  C  C  I  Y  Y  V  L  L  E  E  A  *  N  F  Q  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39237" stop="39779"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>540</number_coding_nucleotides>
                  <number_encoded_amino_acids>180</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TIVHNCPNFTHFRLCIMSPGQPDYLTNEPMDEAFGAVVKTCKKLQRLSVSGRLTDLTFEYIGKYAKNLETLSVAFSGGTDWGMQCVLDGCSKLRKLEIRDSPFGNAALLSGMGKYESMRCLWMSACRVTMNGCRILARERPRLNVEVIKDEHSDDYADKLYVYRSVAGPRRDAPPFVVTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39805" stop="40047"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APSLTLPLSYARQNSVEWIDDMLIMQSFIFICRHALGYPFISASFICYNMHDVRKGGREKVSEQWIKGISLLMLHLLCFT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="48977" PGL_stop="49925"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48977" e_stop="49925"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="48977" e_stop="49925" e_length="949"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48977" stop="49925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566975" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATCCCAAATCTCTATCTAATTCGCCGGAATCTTCACTTCTCCGACCACATCTCGCCGGAGAATGGAATTCAGGGAAGACGAATGAAATCCATCATGTCTACTCTACCGGAAAATGCAGAAAATCCAGTTGGGTCATCCGCCGGAAAATCAAGAATCCGGCGAGTTAATGAGTTCATTTCTTCACTTATATCTCTTTCGTATTCAATCAAAGTTTTCCCTGTGAAATGGCAATCGATACGAAGCAAGCTTGAAGAGCTTCTTTCGAGTTTATCTGCTATTGAGAATTGTGATTCCACAGAAAACTACCCTCCACTCTGCAGCTCCCTTCAGGCCATTACAGCTACCCTCAAGAATTGCCATGAACTTTCTCGGCATTGTGTTGAGTTTTCTTATAGTGGGAAACTGCTGATGCAGAGTGATCTTGATATAGTTTCTACAAAATTAGACAATCATATAAAGAGTATTTCTGAGATTTACTCTCTTGGTTTGCTTACTCAAAGCTCTGCCATTATTGTTCCAAAGCCCAATCTTGGAGCTTCTCGTGATGATATCAAGTTTTATATTAGGGATTTGTTGTCAAGGGTCAAGATTGGGTCTTCAGAGATGAAGAAACAAGGGTTGATTGCTTTGAATGAAATTATTCAAGAAGATGATAGGTATGTTAAAGTTGCAATTGAAATTGATAACCTTGTTTCTGTGTTAGTGAGTTTTCTTGATTTGCAAGAAGATAATCTTCAAGAAGAAGCAGCTAAGGCATTATCTGTAATAGCAGGGTTTCAATCTTTTAGAAGTTGTTTGATTTCTGCTGGAATAATTTCCCCTTTGATTAGAGTTTTGGAGTGTGGGATTGGGTTGAGTAAAGAATTTGCCACCAGGTGTTTGCAAAAGCTCACAGAGAACTCAGATAATGCATGGTCAATTTCAGCTCATGGTGGGGTTACTGTTTTG</gDNA_template>
            <first_frame> H  P  K  S  L  S  N  S  P  E  S  S  L  L  R  P  H  L  A  G  E  W  N  S  G  K  T  N  E  I  H  H  V  Y  S  T  G  K  C  R  K  S  S  W  V  I  R  R  K  I  K  N  P  A  S  *  *  V  H  F  F  T  Y  I  S  F  V  F  N  Q  S  F  P  C  E  M  A  I  D  T  K  Q  A  *  R  A  S  F  E  F  I  C  Y  *  E  L  *  F  H  R  K  L  P  S  T  L  Q  L  P  S  G  H  Y  S  Y  P  Q  E  L  P  *  T  F  S  A  L  C  *  V  F  L  *  W  E  T  A  D  A  E  *  S  *  Y  S  F  Y  K  I  R  Q  S  Y  K  E  Y  F  *  D  L  L  S  W  F  A  Y  S  K  L  C  H  Y  C  S  K  A  Q  S  W  S  F  S  *  *  Y  Q  V  L  Y  *  G  F  V  V  K  G  Q  D  W  V  F  R  D  E  E  T  R  V  D  C  F  E  *  N  Y  S  R  R  *  *  V  C  *  S  C  N  *  N  *  *  P  C  F  C  V  S  E  F  S  *  F  A  R  R  *  S  S  R  R  S  S  *  G  I  I  C  N  S  R  V  S  I  F  *  K  L  F  D  F  C  W  N  N  F  P  F  D  *  S  F  G  V  W  D  W  V  E  *  R  I  C  H  Q  V  F  A  K  A  H  R  E  L  R  *  C  M  V  N  F  S  S  W  W  G  Y  C  F  </first_frame>
            <second_frame>  I  P  N  L  Y  L  I  R  R  N  L  H  F  S  D  H  I  S  P  E  N  G  I  Q  G  R  R  M  K  S  I  M  S  T  L  P  E  N  A  E  N  P  V  G  S  S  A  G  K  S  R  I  R  R  V  N  E  F  I  S  S  L  I  S  L  S  Y  S  I  K  V  F  P  V  K  W  Q  S  I  R  S  K  L  E  E  L  L  S  S  L  S  A  I  E  N  C  D  S  T  E  N  Y  P  P  L  C  S  S  L  Q  A  I  T  A  T  L  K  N  C  H  E  L  S  R  H  C  V  E  F  S  Y  S  G  K  L  L  M  Q  S  D  L  D  I  V  S  T  K  L  D  N  H  I  K  S  I  S  E  I  Y  S  L  G  L  L  T  Q  S  S  A  I  I  V  P  K  P  N  L  G  A  S  R  D  D  I  K  F  Y  I  R  D  L  L  S  R  V  K  I  G  S  S  E  M  K  K  Q  G  L  I  A  L  N  E  I  I  Q  E  D  D  R  Y  V  K  V  A  I  E  I  D  N  L  V  S  V  L  V  S  F  L  D  L  Q  E  D  N  L  Q  E  E  A  A  K  A  L  S  V  I  A  G  F  Q  S  F  R  S  C  L  I  S  A  G  I  I  S  P  L  I  R  V  L  E  C  G  I  G  L  S  K  E  F  A  T  R  C  L  Q  K  L  T  E  N  S  D  N  A  W  S  I  S  A  H  G  G  V  T  V  L </second_frame>
            <third_frame>   S  Q  I  S  I  *  F  A  G  I  F  T  S  P  T  T  S  R  R  R  M  E  F  R  E  D  E  *  N  P  S  C  L  L  Y  R  K  M  Q  K  I  Q  L  G  H  P  P  E  N  Q  E  S  G  E  L  M  S  S  F  L  H  L  Y  L  F  R  I  Q  S  K  F  S  L  *  N  G  N  R  Y  E  A  S  L  K  S  F  F  R  V  Y  L  L  L  R  I  V  I  P  Q  K  T  T  L  H  S  A  A  P  F  R  P  L  Q  L  P  S  R  I  A  M  N  F  L  G  I  V  L  S  F  L  I  V  G  N  C  *  C  R  V  I  L  I  *  F  L  Q  N  *  T  I  I  *  R  V  F  L  R  F  T  L  L  V  C  L  L  K  A  L  P  L  L  F  Q  S  P  I  L  E  L  L  V  M  I  S  S  F  I  L  G  I  C  C  Q  G  S  R  L  G  L  Q  R  *  R  N  K  G  *  L  L  *  M  K  L  F  K  K  M  I  G  M  L  K  L  Q  L  K  L  I  T  L  F  L  C  *  *  V  F  L  I  C  K  K  I  I  F  K  K  K  Q  L  R  H  Y  L  *  *  Q  G  F  N  L  L  E  V  V  *  F  L  L  E  *  F  P  L  *  L  E  F  W  S  V  G  L  G  *  V  K  N  L  P  P  G  V  C  K  S  S  Q  R  T  Q  I  M  H  G  Q  F  Q  L  M  V  G  L  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48978" stop="49925"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>948</number_coding_nucleotides>
                  <number_encoded_amino_acids>316</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IPNLYLIRRNLHFSDHISPENGIQGRRMKSIMSTLPENAENPVGSSAGKSRIRRVNEFISSLISLSYSIKVFPVKWQSIRSKLEELLSSLSAIENCDSTENYPPLCSSLQAITATLKNCHELSRHCVEFSYSGKLLMQSDLDIVSTKLDNHIKSISEIYSLGLLTQSSAIIVPKPNLGASRDDIKFYIRDLLSRVKIGSSEMKKQGLIALNEIIQEDDRYVKVAIEIDNLVSVLVSFLDLQEDNLQEEAAKALSVIAGFQSFRSCLISAGIISPLIRVLECGIGLSKEFATRCLQKLTENSDNAWSISAHGGVTVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="55977" PGL_stop="52553"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55977" e_stop="55918"/>
            <exon e_start="55242" e_stop="55145"/>
            <exon e_start="55059" e_stop="54994"/>
            <exon e_start="54883" e_stop="54063"/>
            <exon e_start="52848" e_stop="52553"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.917"/>
          <exon-intron don_prob="0.859" acc_prob="0.968" e_score="0.990"/>
          <exon-intron don_prob="0.827" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="55977" e_stop="55918" e_length="60"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="55917" i_stop="55243" i_length="675"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="55242" e_stop="55145" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.859" acc_prob="0.968">
            <gDNA_intron_boundary i_start="55144" i_stop="55060" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55059" e_stop="54994" e_length="66"/>
          </exon>
          <intron i_serial="3" don_prob="0.827" acc_prob="0.968">
            <gDNA_intron_boundary i_start="54993" i_stop="54884" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="54883" e_stop="54063" e_length="821"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.984">
            <gDNA_intron_boundary i_start="54062" i_stop="52849" i_length="1214"/>
          </intron>
          <exon e_serial="5" e_score="0.986">
            <gDNA_exon_boundary e_start="52848" e_stop="52553" e_length="296"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55977" stop="55918"/>
              <exon start="55242" stop="55145"/>
              <exon start="55059" stop="54994"/>
              <exon start="54883" stop="54063"/>
              <exon start="52848" stop="52553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584960" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTTACGAGGGAAGAGATGATTGAGACTTATGTGCAGACTGCTGCTAAGGTCTTCGGGAG : TGTGGAAGAGGCTAAGAAAAAGATTTATGCCTTAAGCACAACAACTTACCGAGGTTTTCAGGTCTTGTGTTCAGAGGACACATCGAAGAAGTTTGAAG : GTCTCCCAGGAGTTGTGTTTGTACTGCCTGATTCCTATATTGATCCAGTAAACAAGGAATATGGAG : GTGACAAGTATAATAACGGAGAAATCATTGAGAGACCACCTCCTCCACAGTTTCAAAGACAAGGTAGCAGGCCTCGAAGAGGCCCACAGTATCAACAAGGCAATTATCGCCCTCCTCAGCAGAACTATGGGCCAGCACAGGGTCATCCACCACAGCAGAATTATGGTGCAGCACAGGGTCCTCCACCACAGCAGAATTATAACGCGCCACAGGGTCCTCCACCCCAGCAGAACTATGGCCCACCAAGGTATCCTCCACCGCAACAGAACTATGGCTCACGACAGTATGCTCCGCCACCTCAACAGAACTACAGACAACCACAGGATCTTTCTCCACAGCAGAATTATGAGCGGCCACAGAATCCTCAGCCAAACCAGAGTTACGGTGTACCTCAGAGTGTTCCTTCTCAGTGGAATCATGGCCTTCAGCCAAAATTTGTACCTCAACAGATCTATGGGCCTCAAGGGGCTGGGGATCATAGGGGTCCTGCACCTCCTGATAGCAACCTAGATGCGTGGGATAATTCCCAGGTTGGATGGGGTGATTCAATACGTTCACCTTTTCCTCGAAGAGACCAGAGAGGTGGTGCACCTCCAGAGCAAGGAGGCTTTGGAGGAGTTCAACATTATGGGTCTCAACAAGGTGGAAGTTCTGAACAACAAACCTTTGGAGATCAACCACTGAGATATGGGCCCCAGTTTGGGCAGAACAATCCAAGGCCAGGAGGAAATCAGAATTTCCCACCGATAGAGCAGCAGGGCAACATGCAAGGGGGGGAGCAGAGGACTTATGCATCTAGTGGTACAATGGGAACAGATCAA : GAGAGATACTAAAGATATGGTGCAGTATCATGACGTACTGAGAAAGGATTGTTAATTAGCTTTTGACTAGCTAAAGGTGATGGTTCTTGTCTGAATAATTGAGAAATGATCATGATCACATCCTCTAGTCTCAACAATTACCAAGAAACTTGGGCTGAAGAATGTTGTGGTAAATAGTTTTCCAATGTCTTAATATGGTTATGGAAATGGTGTTTTGTGAATGATAACATGGAGAGACTTAGGTGTAAAACAAGCCTCTTGTATCTGTTTCTTTTTGTGCAAGGAAGAAGGTTTCT</gDNA_template>
            <first_frame> A  Y  E  G  R  D  D  *  D  L  C  A  D  C  C  *  G  L  R  E  :  C  G  R  G  *  E  K  D  L  C  L  K  H  N  N  L  P  R  F  S  G  L  V  F  R  G  H  I  E  E  V  *  R :   S  P  R  S  C  V  C  T  A  *  F  L  Y  *  S  S  K  Q  G  I  W  R :   *  Q  V  *  *  R  R  N  H  *  E  T  T  S  S  T  V  S  K  T  R  *  Q  A  S  K  R  P  T  V  S  T  R  Q  L  S  P  S  S  A  E  L  W  A  S  T  G  S  S  T  T  A  E  L  W  C  S  T  G  S  S  T  T  A  E  L  *  R  A  T  G  S  S  T  P  A  E  L  W  P  T  K  V  S  S  T  A  T  E  L  W  L  T  T  V  C  S  A  T  S  T  E  L  Q  T  T  T  G  S  F  S  T  A  E  L  *  A  A  T  E  S  S  A  K  P  E  L  R  C  T  S  E  C  S  F  S  V  E  S  W  P  S  A  K  I  C  T  S  T  D  L  W  A  S  R  G  W  G  S  *  G  S  C  T  S  *  *  Q  P  R  C  V  G  *  F  P  G  W  M  G  *  F  N  T  F  T  F  S  S  K  R  P  E  R  W  C  T  S  R  A  R  R  L  W  R  S  S  T  L  W  V  S  T  R  W  K  F  *  T  T  N  L  W  R  S  T  T  E  I  W  A  P  V  W  A  E  Q  S  K  A  R  R  K  S  E  F  P  T  D  R  A  A  G  Q  H  A  R  G  G  A  E  D  L  C  I  *  W  Y  N  G  N  R  S   : R  E  I  L  K  I  W  C  S  I  M  T  Y  *  E  R  I  V  N  *  L  L  T  S  *  R  *  W  F  L  S  E  *  L  R  N  D  H  D  H  I  L  *  S  Q  Q  L  P  R  N  L  G  *  R  M  L  W  *  I  V  F  Q  C  L  N  M  V  M  E  M  V  F  C  E  *  *  H  G  E  T  *  V  *  N  K  P  L  V  S  V  S  F  C  A  R  K  K  V  S </first_frame>
            <second_frame>  L  T  R  E  E  M  I  E  T  Y  V  Q  T  A  A  K  V  F  G  S :   V  E  E  A  K  K  K  I  Y  A  L  S  T  T  T  Y  R  G  F  Q  V  L  C  S  E  D  T  S  K  K  F  E   : G  L  P  G  V  V  F  V  L  P  D  S  Y  I  D  P  V  N  K  E  Y  G   : G  D  K  Y  N  N  G  E  I  I  E  R  P  P  P  P  Q  F  Q  R  Q  G  S  R  P  R  R  G  P  Q  Y  Q  Q  G  N  Y  R  P  P  Q  Q  N  Y  G  P  A  Q  G  H  P  P  Q  Q  N  Y  G  A  A  Q  G  P  P  P  Q  Q  N  Y  N  A  P  Q  G  P  P  P  Q  Q  N  Y  G  P  P  R  Y  P  P  P  Q  Q  N  Y  G  S  R  Q  Y  A  P  P  P  Q  Q  N  Y  R  Q  P  Q  D  L  S  P  Q  Q  N  Y  E  R  P  Q  N  P  Q  P  N  Q  S  Y  G  V  P  Q  S  V  P  S  Q  W  N  H  G  L  Q  P  K  F  V  P  Q  Q  I  Y  G  P  Q  G  A  G  D  H  R  G  P  A  P  P  D  S  N  L  D  A  W  D  N  S  Q  V  G  W  G  D  S  I  R  S  P  F  P  R  R  D  Q  R  G  G  A  P  P  E  Q  G  G  F  G  G  V  Q  H  Y  G  S  Q  Q  G  G  S  S  E  Q  Q  T  F  G  D  Q  P  L  R  Y  G  P  Q  F  G  Q  N  N  P  R  P  G  G  N  Q  N  F  P  P  I  E  Q  Q  G  N  M  Q  G  G  E  Q  R  T  Y  A  S  S  G  T  M  G  T  D  Q  :  E  R  Y  *  R  Y  G  A  V  S  *  R  T  E  K  G  L  L  I  S  F  *  L  A  K  G  D  G  S  C  L  N  N  *  E  M  I  M  I  T  S  S  S  L  N  N  Y  Q  E  T  W  A  E  E  C  C  G  K  *  F  S  N  V  L  I  W  L  W  K  W  C  F  V  N  D  N  M  E  R  L  R  C  K  T  S  L  L  Y  L  F  L  F  V  Q  G  R  R  F   </second_frame>
            <third_frame>   L  R  G  K  R  *  L  R  L  M  C  R  L  L  L  R  S  S  G   : V  W  K  R  L  R  K  R  F  M  P  *  A  Q  Q  L  T  E  V  F  R  S  C  V  Q  R  T  H  R  R  S  L  K  :  V  S  Q  E  L  C  L  Y  C  L  I  P  I  L  I  Q  *  T  R  N  M  E  :  V  T  S  I  I  T  E  K  S  L  R  D  H  L  L  H  S  F  K  D  K  V  A  G  L  E  E  A  H  S  I  N  K  A  I  I  A  L  L  S  R  T  M  G  Q  H  R  V  I  H  H  S  R  I  M  V  Q  H  R  V  L  H  H  S  R  I  I  T  R  H  R  V  L  H  P  S  R  T  M  A  H  Q  G  I  L  H  R  N  R  T  M  A  H  D  S  M  L  R  H  L  N  R  T  T  D  N  H  R  I  F  L  H  S  R  I  M  S  G  H  R  I  L  S  Q  T  R  V  T  V  Y  L  R  V  F  L  L  S  G  I  M  A  F  S  Q  N  L  Y  L  N  R  S  M  G  L  K  G  L  G  I  I  G  V  L  H  L  L  I  A  T  *  M  R  G  I  I  P  R  L  D  G  V  I  Q  Y  V  H  L  F  L  E  E  T  R  E  V  V  H  L  Q  S  K  E  A  L  E  E  F  N  I  M  G  L  N  K  V  E  V  L  N  N  K  P  L  E  I  N  H  *  D  M  G  P  S  L  G  R  T  I  Q  G  Q  E  E  I  R  I  S  H  R  *  S  S  R  A  T  C  K  G  G  S  R  G  L  M  H  L  V  V  Q  W  E  Q  I  K :   R  D  T  K  D  M  V  Q  Y  H  D  V  L  R  K  D  C  *  L  A  F  D  *  L  K  V  M  V  L  V  *  I  I  E  K  *  S  *  S  H  P  L  V  S  T  I  T  K  K  L  G  L  K  N  V  V  V  N  S  F  P  M  S  *  Y  G  Y  G  N  G  V  L  *  M  I  T  W  R  D  L  G  V  K  Q  A  S  C  I  C  F  F  L  C  K  E  E  G  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55976" stop="55918"/>
                    <exon start="55242" stop="55145"/>
                    <exon start="55059" stop="54994"/>
                    <exon start="54883" stop="54063"/>
                    <exon start="52848" stop="52837"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1053</number_coding_nucleotides>
                  <number_encoded_amino_acids>351</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTREEMIETYVQTAAKVFGSVEEAKKKIYALSTTTYRGFQVLCSEDTSKKFEGLPGVVFVLPDSYIDPVNKEYGGDKYNNGEIIERPPPPQFQRQGSRPRRGPQYQQGNYRPPQQNYGPAQGHPPQQNYGAAQGPPPQQNYNAPQGPPPQQNYGPPRYPPPQQNYGSRQYAPPPQQNYRQPQDLSPQQNYERPQNPQPNQSYGVPQSVPSQWNHGLQPKFVPQQIYGPQGAGDHRGPAPPDSNLDAWDNSQVGWGDSIRSPFPRRDQRGGAPPEQGGFGGVQHYGSQQGGSSEQQTFGDQPLRYGPQFGQNNPRPGGNQNFPPIEQQGNMQGGEQRTYASSGTMGTDQERY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="56445" PGL_stop="56044"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56445" e_stop="56044"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="56445" e_stop="56044" e_length="402"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56445" stop="56044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U598568" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAATAAAACTGAAATTTAATCGGCACTTCTCTTCTCCCTTTCTATTCCCTAATTCAATTCTAAAACCCTAAACCCTAGCACAGAGTTTACTTCCTCATTTCATTCTCTCCTCCGTCGGCAACCACACATATCCACCAGCGATGGCGCTGTATACTTCCCGTCTCCGGCGAGCTCTCCCTCTTTCTTCTTCAATTTTTGCTCAAACTTTCCATCAACCAAATCTCATTTCTCCAATTGCATCACTCTCCCAATGTACGTCTACCCAAAGCAATTTGTCTAAGCTTAACCGTTTCGATTTTCCGTCCCAATGGAGACTATTTAGGTCTTCTACAATATCGCTGTCCTCGAGGTCTCGATCATTTGACCGAAATCCAGCTGACGATGAAATAGGTCCCGACAC</gDNA_template>
            <first_frame> F  N  K  T  E  I  *  S  A  L  L  F  S  L  S  I  P  *  F  N  S  K  T  L  N  P  S  T  E  F  T  S  S  F  H  S  L  L  R  R  Q  P  H  I  S  T  S  D  G  A  V  Y  F  P  S  P  A  S  S  P  S  F  F  F  N  F  C  S  N  F  P  S  T  K  S  H  F  S  N  C  I  T  L  P  M  Y  V  Y  P  K  Q  F  V  *  A  *  P  F  R  F  S  V  P  M  E  T  I  *  V  F  Y  N  I  A  V  L  E  V  S  I  I  *  P  K  S  S  *  R  *  N  R  S  R  H </first_frame>
            <second_frame>  S  I  K  L  K  F  N  R  H  F  S  S  P  F  L  F  P  N  S  I  L  K  P  *  T  L  A  Q  S  L  L  P  H  F  I  L  S  S  V  G  N  H  T  Y  P  P  A  M  A  L  Y  T  S  R  L  R  R  A  L  P  L  S  S  S  I  F  A  Q  T  F  H  Q  P  N  L  I  S  P  I  A  S  L  S  Q  C  T  S  T  Q  S  N  L  S  K  L  N  R  F  D  F  P  S  Q  W  R  L  F  R  S  S  T  I  S  L  S  S  R  S  R  S  F  D  R  N  P  A  D  D  E  I  G  P  D   </second_frame>
            <third_frame>   Q  *  N  *  N  L  I  G  T  S  L  L  P  F  Y  S  L  I  Q  F  *  N  P  K  P  *  H  R  V  Y  F  L  I  S  F  S  P  P  S  A  T  T  H  I  H  Q  R  W  R  C  I  L  P  V  S  G  E  L  S  L  F  L  L  Q  F  L  L  K  L  S  I  N  Q  I  S  F  L  Q  L  H  H  S  P  N  V  R  L  P  K  A  I  C  L  S  L  T  V  S  I  F  R  P  N  G  D  Y  L  G  L  L  Q  Y  R  C  P  R  G  L  D  H  L  T  E  I  Q  L  T  M  K  *  V  P  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56372" stop="56046"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLAQSLLPHFILSSVGNHTYPPAMALYTSRLRRALPLSSSIFAQTFHQPNLISPIASLSQCTSTQSNLSKLNRFDFPSQWRLFRSSTISLSSRSRSFDRNPADDEIGPD</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56365" stop="56054"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HRVYFLISFSPPSATTHIHQRWRCILPVSGELSLFLLQFLLKLSINQISFLQLHHSPNVRLPKAICLSLTVSIFRPNGDYLGLLQYRCPRGLDHLTEIQLTMK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="66990" PGL_stop="68220"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66990" e_stop="67376"/>
            <exon e_start="67467" e_stop="68220"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66990" e_stop="67376" e_length="387"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="67377" i_stop="67466" i_length="90"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="67467" e_stop="68220" e_length="754"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66990" stop="67376"/>
              <exon start="67467" stop="68220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584262" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACCACGACGAAGCCAAAGCTCGATTGAAGAGAATTAGGGGAATTGAAGATGTAGATGAAGAGTTCAATGATTTGGTTATTGCTAGTGAAGCTTCTAGGAAAATTGAACATCCCTGGAGGAACTTGTTGCAAAAGAAATATAGACCACATCTTACAATGGCAATTATGATCCCATTTTTCCAACAACTTACTGGAATCAACGTGATTATGTTTTATGCACCTGTGTTGTTTAAAACCATTGGTTTTGGTACTGATGCTTCACTTATGTCTGCTGTGATCACTGGTGGAATCAATGTCATTGCCACTATTGTTTCTATTTACTATGTTGATAAATTAGGAAGAAGATTCTTGTTTCTTGAAGGTGGAATTCAAATGCTCTTTTCCCAA : ATAGCCGTGGCAATTTTGATAGCAATAAAGTTTGGAGTAAATGGAACTCCAGGGGAATTACCAAAATGGTATGCAATAGTGGTTGTGATATTCATTTGTGTATATGTTGCTGGATTCGCTTGGTCATGGGGTCCTCTTGGATGGCTCGTACCTAGTGAAATTTTCCCACTGGAAATTCGATCAGCTGCACAAAGTATCAATGTCTCAGTGAACATGATCTTCACATTTGCAGTAGCACAAGTTTTCTTAACAATGTTGTGTCATTTGAAGTTTGGATTGTTTCTGTTTTTCGCCTTCTTTGTGGTGATTATGACTGTGTTCATATACTTCTTCTTGCCTGAGACGAAAAATATTCCGATAGAAGAGATGGTGATTGTGTGGAAAGAACATTGGTTCTGGTCTAAGTTCATGACTGAAGTTGATTATCCTGGAACTAGGAATGGAACTGCTGTTGAAATGGCTAAAGGGGGTGCTGGTTACAAAATTGTATGACTTTAGTTTGGGTTTTTAAATTTTTATTTGTTGTTTGTATAATGTTGTAGTGGGGATGATATTGATAATTATTAATTAGATTTGATTGAAACTGTTTCTATTGTTTACTTTTGCATAGAAAAAAATACATAACTTTGTTCAATAGAAAATTTGGCAAAGCAACTGTGTAGCCTTTTGTTTGTTTTGTTGGATGTACTATTTAGTAGTTCTAGTCTTTTAGTGTAAGATCTTTATTATAAAAAATTATGTTCATAAGCTGTGC</gDNA_template>
            <first_frame> N  H  D  E  A  K  A  R  L  K  R  I  R  G  I  E  D  V  D  E  E  F  N  D  L  V  I  A  S  E  A  S  R  K  I  E  H  P  W  R  N  L  L  Q  K  K  Y  R  P  H  L  T  M  A  I  M  I  P  F  F  Q  Q  L  T  G  I  N  V  I  M  F  Y  A  P  V  L  F  K  T  I  G  F  G  T  D  A  S  L  M  S  A  V  I  T  G  G  I  N  V  I  A  T  I  V  S  I  Y  Y  V  D  K  L  G  R  R  F  L  F  L  E  G  G  I  Q  M  L  F  S  Q  :  I  A  V  A  I  L  I  A  I  K  F  G  V  N  G  T  P  G  E  L  P  K  W  Y  A  I  V  V  V  I  F  I  C  V  Y  V  A  G  F  A  W  S  W  G  P  L  G  W  L  V  P  S  E  I  F  P  L  E  I  R  S  A  A  Q  S  I  N  V  S  V  N  M  I  F  T  F  A  V  A  Q  V  F  L  T  M  L  C  H  L  K  F  G  L  F  L  F  F  A  F  F  V  V  I  M  T  V  F  I  Y  F  F  L  P  E  T  K  N  I  P  I  E  E  M  V  I  V  W  K  E  H  W  F  W  S  K  F  M  T  E  V  D  Y  P  G  T  R  N  G  T  A  V  E  M  A  K  G  G  A  G  Y  K  I  V  *  L  *  F  G  F  L  N  F  Y  L  L  F  V  *  C  C  S  G  D  D  I  D  N  Y  *  L  D  L  I  E  T  V  S  I  V  Y  F  C  I  E  K  N  T  *  L  C  S  I  E  N  L  A  K  Q  L  C  S  L  L  F  V  L  L  D  V  L  F  S  S  S  S  L  L  V  *  D  L  Y  Y  K  K  L  C  S  *  A  V  </first_frame>
            <second_frame>  T  T  T  K  P  K  L  D  *  R  E  L  G  E  L  K  M  *  M  K  S  S  M  I  W  L  L  L  V  K  L  L  G  K  L  N  I  P  G  G  T  C  C  K  R  N  I  D  H  I  L  Q  W  Q  L  *  S  H  F  S  N  N  L  L  E  S  T  *  L  C  F  M  H  L  C  C  L  K  P  L  V  L  V  L  M  L  H  L  C  L  L  *  S  L  V  E  S  M  S  L  P  L  L  F  L  F  T  M  L  I  N  *  E  E  D  S  C  F  L  K  V  E  F  K  C  S  F  P  K :   *  P  W  Q  F  *  *  Q  *  S  L  E  *  M  E  L  Q  G  N  Y  Q  N  G  M  Q  *  W  L  *  Y  S  F  V  Y  M  L  L  D  S  L  G  H  G  V  L  L  D  G  S  Y  L  V  K  F  S  H  W  K  F  D  Q  L  H  K  V  S  M  S  Q  *  T  *  S  S  H  L  Q  *  H  K  F  S  *  Q  C  C  V  I  *  S  L  D  C  F  C  F  S  P  S  L  W  *  L  *  L  C  S  Y  T  S  S  C  L  R  R  K  I  F  R  *  K  R  W  *  L  C  G  K  N  I  G  S  G  L  S  S  *  L  K  L  I  I  L  E  L  G  M  E  L  L  L  K  W  L  K  G  V  L  V  T  K  L  Y  D  F  S  L  G  F  *  I  F  I  C  C  L  Y  N  V  V  V  G  M  I  L  I  I  I  N  *  I  *  L  K  L  F  L  L  F  T  F  A  *  K  K  I  H  N  F  V  Q  *  K  I  W  Q  S  N  C  V  A  F  C  L  F  C  W  M  Y  Y  L  V  V  L  V  F  *  C  K  I  F  I  I  K  N  Y  V  H  K  L  C </second_frame>
            <third_frame>   P  R  R  S  Q  S  S  I  E  E  N  *  G  N  *  R  C  R  *  R  V  Q  *  F  G  Y  C  *  *  S  F  *  E  N  *  T  S  L  E  E  L  V  A  K  E  I  *  T  T  S  Y  N  G  N  Y  D  P  I  F  P  T  T  Y  W  N  Q  R  D  Y  V  L  C  T  C  V  V  *  N  H  W  F  W  Y  *  C  F  T  Y  V  C  C  D  H  W  W  N  Q  C  H  C  H  Y  C  F  Y  L  L  C  *  *  I  R  K  K  I  L  V  S  *  R  W  N  S  N  A  L  F  P   : N  S  R  G  N  F  D  S  N  K  V  W  S  K  W  N  S  R  G  I  T  K  M  V  C  N  S  G  C  D  I  H  L  C  I  C  C  W  I  R  L  V  M  G  S  S  W  M  A  R  T  *  *  N  F  P  T  G  N  S  I  S  C  T  K  Y  Q  C  L  S  E  H  D  L  H  I  C  S  S  T  S  F  L  N  N  V  V  S  F  E  V  W  I  V  S  V  F  R  L  L  C  G  D  Y  D  C  V  H  I  L  L  L  A  *  D  E  K  Y  S  D  R  R  D  G  D  C  V  E  R  T  L  V  L  V  *  V  H  D  *  S  *  L  S  W  N  *  E  W  N  C  C  *  N  G  *  R  G  C  W  L  Q  N  C  M  T  L  V  W  V  F  K  F  L  F  V  V  C  I  M  L  *  W  G  *  Y  *  *  L  L  I  R  F  D  *  N  C  F  Y  C  L  L  L  H  R  K  K  Y  I  T  L  F  N  R  K  F  G  K  A  T  V  *  P  F  V  C  F  V  G  C  T  I  *  *  F  *  S  F  S  V  R  S  L  L  *  K  I  M  F  I  S  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66990" stop="67376"/>
                    <exon start="67467" stop="67958"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>876</number_coding_nucleotides>
                  <number_encoded_amino_acids>292</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NHDEAKARLKRIRGIEDVDEEFNDLVIASEASRKIEHPWRNLLQKKYRPHLTMAIMIPFFQQLTGINVIMFYAPVLFKTIGFGTDASLMSAVITGGINVIATIVSIYYVDKLGRRFLFLEGGIQMLFSQIAVAILIAIKFGVNGTPGELPKWYAIVVVIFICVYVAGFAWSWGPLGWLVPSEIFPLEIRSAAQSINVSVNMIFTFAVAQVFLTMLCHLKFGLFLFFAFFVVIMTVFIYFFLPETKNIPIEEMVIVWKEHWFWSKFMTEVDYPGTRNGTAVEMAKGGAGYKIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="79316" PGL_stop="75193"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79316" e_stop="78904"/>
            <exon e_start="76900" e_stop="76830"/>
            <exon e_start="76662" e_stop="76581"/>
            <exon e_start="76441" e_stop="76323"/>
            <exon e_start="75896" e_stop="75819"/>
            <exon e_start="75680" e_stop="75561"/>
            <exon e_start="75462" e_stop="75193"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.948" acc_prob="0.946" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.854" e_score="1.000"/>
          <exon-intron don_prob="0.763" acc_prob="0.935" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.924" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79316" e_stop="78904" e_length="413"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.923">
            <gDNA_intron_boundary i_start="78903" i_stop="76901" i_length="2003"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76900" e_stop="76830" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.948" acc_prob="0.946">
            <gDNA_intron_boundary i_start="76829" i_stop="76663" i_length="167"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76662" e_stop="76581" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="76580" i_stop="76442" i_length="139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="76441" e_stop="76323" e_length="119"/>
          </exon>
          <intron i_serial="4" don_prob="0.960" acc_prob="0.854">
            <gDNA_intron_boundary i_start="76322" i_stop="75897" i_length="426"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="75896" e_stop="75819" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.763" acc_prob="0.935">
            <gDNA_intron_boundary i_start="75818" i_stop="75681" i_length="138"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="75680" e_stop="75561" e_length="120"/>
          </exon>
          <intron i_serial="6" don_prob="0.945" acc_prob="0.924">
            <gDNA_intron_boundary i_start="75560" i_stop="75463" i_length="98"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="75462" e_stop="75193" e_length="270"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79316" stop="78904"/>
              <exon start="76900" stop="76830"/>
              <exon start="76662" stop="76581"/>
              <exon start="76441" stop="76323"/>
              <exon start="75896" stop="75819"/>
              <exon start="75680" stop="75561"/>
              <exon start="75462" stop="75193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582470" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACTTTGCCCGTTGCATTTCCAAAATTCAACTCCCTGCTATTCCAAAAAGTGTTGTCAACAAGCTGTCAATAAAGGAGACTGCACGACGTCGTTCTGAAATCTCCGAATTACCGGTGAAAGTTCCTTAGTTTCCGGTATCTGATGGCGATCGCCGACGAGAAGGACGGTAAAGTTTGGGGACTGTTTAAGCTCCCTTTTCGAAACGCACAGTCAACGACGACTTCGCGTTCGTCTTCGCATAATACTCTTCATTACCGCAGTCAACAACATCAATCTCTCGGAAATACTTCTCTGGATGATGGATCGGTTCCTCGTAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTGCTTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTT : ATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAG : TTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCG : TATTCAAGTTTGTAGAGCATCCAGAAAATAATGAAAAACCAATGGACCAGAAGAGCAGAGTGAAGTTCAAGATCATGAGCCTCAAGGTGAAAGGACCGATGGACTATGTACCTGAGCTG : TTTGAAGAGCAAAAGGATCAAGTAGCCGTAGAGCAAATTCTGCGGGTTATCTTTCTCGATGTGGAACGTCCTAGTCCA : ACTTTGGAAAAATTGAAGCGCCAGCTGGCGGAGGCAGACGCTGCTCTTGAGGAACGCAAGAAGCCTGTGGAAGATACAGGTCCAAAGATTATTGGTGAAGGGCTTGTCATAGATGAATGG : AAGGAAAGAAGAGAGAGGTACCTAGCTCGGCAGCAAGTTGAAGGCGGTGTGGAATCTGTATAACTTGCAGGTATTGTTTCGACATCTTAGCTTTGGCTGGAAAAGATACCAGCCTTATTGTTGTGTGTAATTGGTTGTTCTATTATGTCACTAAACACATTAGTGAACATTCACAAGAGAGAATTTCAATGTCCCAATCACAGTTACTTGGTATAACCTCAAAGCTGTATATAATGTCATTCCTTTTAAGTAATGAGAGATTTTCAGTTG</gDNA_template>
            <first_frame> N  F  A  R  C  I  S  K  I  Q  L  P  A  I  P  K  S  V  V  N  K  L  S  I  K  E  T  A  R  R  R  S  E  I  S  E  L  P  V  K  V  P  *  F  P  V  S  D  G  D  R  R  R  E  G  R  *  S  L  G  T  V  *  A  P  F  S  K  R  T  V  N  D  D  F  A  F  V  F  A  *  Y  S  S  L  P  Q  S  T  T  S  I  S  R  K  Y  F  S  G  *  W  I  G  S  S  *  Q  Q  F  Q  L  R  F  F  S  S  Q  V  F  A  S  C  T  P  S  V  E  T  *  S  F  Q  *  A  L  F  S  L :   *  T  W  *  A  S  S  K  C  Y  Q  D  K  K  L  Q  Q  V  S  R  S  F  Q   : V  P  N  N  C  T  Q  K  L  F  H  A  S  S  R  S  N  S  R  P  R  *  E  H  H  C  N  R :   I  Q  V  C  R  A  S  R  K  *  *  K  T  N  G  P  E  E  Q  S  E  V  Q  D  H  E  P  Q  G  E  R  T  D  G  L  C  T  *  A   : V  *  R  A  K  G  S  S  S  R  R  A  N  S  A  G  Y  L  S  R  C  G  T  S  *  S   : N  F  G  K  I  E  A  P  A  G  G  G  R  R  C  S  *  G  T  Q  E  A  C  G  R  Y  R  S  K  D  Y  W  *  R  A  C  H  R  *  M   : E  G  K  K  R  E  V  P  S  S  A  A  S  *  R  R  C  G  I  C  I  T  C  R  Y  C  F  D  I  L  A  L  A  G  K  D  T  S  L  I  V  V  C  N  W  L  F  Y  Y  V  T  K  H  I  S  E  H  S  Q  E  R  I  S  M  S  Q  S  Q  L  L  G  I  T  S  K  L  Y  I  M  S  F  L  L  S  N  E  R  F  S  V  </first_frame>
            <second_frame>  T  L  P  V  A  F  P  K  F  N  S  L  L  F  Q  K  V  L  S  T  S  C  Q  *  R  R  L  H  D  V  V  L  K  S  P  N  Y  R  *  K  F  L  S  F  R  Y  L  M  A  I  A  D  E  K  D  G  K  V  W  G  L  F  K  L  P  F  R  N  A  Q  S  T  T  T  S  R  S  S  S  H  N  T  L  H  Y  R  S  Q  Q  H  Q  S  L  G  N  T  S  L  D  D  G  S  V  P  R  S  N  S  S  S  S  V  S  S  V  A  R  S  L  L  P  A  R  R  R  L  K  L  D  P  S  N  K  L  Y  F  P   : Y  E  P  G  K  Q  V  R  S  A  I  K  I  K  N  S  S  K  S  H  V  A  F  K  :  F  Q  T  T  A  P  K  S  C  F  M  R  P  P  G  A  I  L  A  P  G  E  S  I  I  A  T   : V  F  K  F  V  E  H  P  E  N  N  E  K  P  M  D  Q  K  S  R  V  K  F  K  I  M  S  L  K  V  K  G  P  M  D  Y  V  P  E  L  :  F  E  E  Q  K  D  Q  V  A  V  E  Q  I  L  R  V  I  F  L  D  V  E  R  P  S  P  :  T  L  E  K  L  K  R  Q  L  A  E  A  D  A  A  L  E  E  R  K  K  P  V  E  D  T  G  P  K  I  I  G  E  G  L  V  I  D  E  W  :  K  E  R  R  E  R  Y  L  A  R  Q  Q  V  E  G  G  V  E  S  V  *  L  A  G  I  V  S  T  S  *  L  W  L  E  K  I  P  A  L  L  L  C  V  I  G  C  S  I  M  S  L  N  T  L  V  N  I  H  K  R  E  F  Q  C  P  N  H  S  Y  L  V  *  P  Q  S  C  I  *  C  H  S  F  *  V  M  R  D  F  Q  L </second_frame>
            <third_frame>   L  C  P  L  H  F  Q  N  S  T  P  C  Y  S  K  K  C  C  Q  Q  A  V  N  K  G  D  C  T  T  S  F  *  N  L  R  I  T  G  E  S  S  L  V  S  G  I  *  W  R  S  P  T  R  R  T  V  K  F  G  D  C  L  S  S  L  F  E  T  H  S  Q  R  R  L  R  V  R  L  R  I  I  L  F  I  T  A  V  N  N  I  N  L  S  E  I  L  L  W  M  M  D  R  F  L  V  A  T  V  P  A  P  F  L  Q  *  P  G  L  C  F  L  H  A  V  G  *  N  L  I  L  P  I  S  F  I  F  L  :  M  N  L  V  S  K  F  E  V  L  S  R  *  K  T  P  A  S  L  T  *  L  S  S :   S  K  Q  L  H  P  K  A  V  S  C  V  L  P  E  Q  F  S  P  P  V  R  A  S  L  Q  P  :  Y  S  S  L  *  S  I  Q  K  I  M  K  N  Q  W  T  R  R  A  E  *  S  S  R  S  *  A  S  R  *  K  D  R  W  T  M  Y  L  S  C :   L  K  S  K  R  I  K  *  P  *  S  K  F  C  G  L  S  F  S  M  W  N  V  L  V  Q :   L  W  K  N  *  S  A  S  W  R  R  Q  T  L  L  L  R  N  A  R  S  L  W  K  I  Q  V  Q  R  L  L  V  K  G  L  S  *  M  N  G :   R  K  E  E  R  G  T  *  L  G  S  K  L  K  A  V  W  N  L  Y  N  L  Q  V  L  F  R  H  L  S  F  G  W  K  R  Y  Q  P  Y  C  C  V  *  L  V  V  L  L  C  H  *  T  H  *  *  T  F  T  R  E  N  F  N  V  P  I  T  V  T  W  Y  N  L  K  A  V  Y  N  V  I  P  F  K  *  *  E  I  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79198" stop="78904"/>
                    <exon start="76900" stop="76830"/>
                    <exon start="76662" stop="76581"/>
                    <exon start="76441" stop="76323"/>
                    <exon start="75896" stop="75819"/>
                    <exon start="75680" stop="75561"/>
                    <exon start="75462" stop="75400"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>825</number_coding_nucleotides>
                  <number_encoded_amino_acids>275</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFLSFRYLMAIADEKDGKVWGLFKLPFRNAQSTTTSRSSSHNTLHYRSQQHQSLGNTSLDDGSVPRSNSSSSVSSVARSLLPARRRLKLDPSNKLYFPYEPGKQVRSAIKIKNSSKSHVAFKFQTTAPKSCFMRPPGAILAPGESIIATVFKFVEHPENNEKPMDQKSRVKFKIMSLKVKGPMDYVPELFEEQKDQVAVEQILRVIFLDVERPSPTLEKLKRQLAEADAALEERKKPVEDTGPKIIGEGLVIDEWKERRERYLARQQVEGGVESV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75421" stop="75194"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRCGICITCRYCFDILALAGKDTSLIVVCNWLFYYVTKHISEHSQERISMSQSQLLGITSKLYIMSFLLSNERFSV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="79310" e_stop="78904"/>
            <exon e_start="76900" e_stop="76571"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.923" e_score="0.998"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="79310" e_stop="78904" e_length="407"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.923">
            <gDNA_intron_boundary i_start="78903" i_stop="76901" i_length="2003"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="76900" e_stop="76571" e_length="330"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79310" stop="78904"/>
              <exon start="76900" stop="76571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596518" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCCGTTGCATTTCCAAAATTCAACTCCCTGCTATTCCAAAAAGTGTTGTCAACAAGCTGTCAATAAAGGAGACTGCACGACGTCGTTCTGAAATCTCCGAATTACCGGTGAAAGTTCCTTAGTTTCCGGTATCTGATGGCGATCGCCGACGAGAAGGACGGTAAAGTTTGGGGACTGTTTAAGCTCCCTTTTCGAAACGCACAGTCAACGACGACTTCGCGTTCGTCTTCGCATAATACTCTTCATTACCGCAGTCAACAACATCAATCTCTCGGAAATACTTCTCTGGATGATGGATCGGTTCCTCGTAGCAACAGTTCCAGCTCCGTTTCTTCAGTAGCCAGGTCTTTGCTTCCTGCACGCCGTCGGTTGAAACTTGATCCTTCCAATAAGCTTTATTTTCCTT : ATGAACCTGGTAAGCAAGTTCGAAGTGCTATCAAGATAAAAAACTCCAGCAAGTCTCACGTAGCTTTCAAGGTACTCATGATTTCTTGTCTCTTCTCCATACACGGGCACTTCATTCTCCCCTAGCCGTCTTTATAGTTTTTAGCTAGAAACTATTTTGAGAATATATCTTGACATATTTATTTTATATGCATTGTTGTTTTTACATGGTTGGTGATGTTTGCCTGTTCTGCATTTAGTTCCAAACAACTGCACCCAAAAGCTGTTTCATGCGTCCTCCCGGAGCAATTCTCGCCCCCGGTGAGAGCATCATTGCAACCGGTAATATTCA</gDNA_template>
            <first_frame> A  R  C  I  S  K  I  Q  L  P  A  I  P  K  S  V  V  N  K  L  S  I  K  E  T  A  R  R  R  S  E  I  S  E  L  P  V  K  V  P  *  F  P  V  S  D  G  D  R  R  R  E  G  R  *  S  L  G  T  V  *  A  P  F  S  K  R  T  V  N  D  D  F  A  F  V  F  A  *  Y  S  S  L  P  Q  S  T  T  S  I  S  R  K  Y  F  S  G  *  W  I  G  S  S  *  Q  Q  F  Q  L  R  F  F  S  S  Q  V  F  A  S  C  T  P  S  V  E  T  *  S  F  Q  *  A  L  F  S  L :   *  T  W  *  A  S  S  K  C  Y  Q  D  K  K  L  Q  Q  V  S  R  S  F  Q  G  T  H  D  F  L  S  L  L  H  T  R  A  L  H  S  P  L  A  V  F  I  V  F  S  *  K  L  F  *  E  Y  I  L  T  Y  L  F  Y  M  H  C  C  F  Y  M  V  G  D  V  C  L  F  C  I  *  F  Q  T  T  A  P  K  S  C  F  M  R  P  P  G  A  I  L  A  P  G  E  S  I  I  A  T  G  N  I   </first_frame>
            <second_frame>  P  V  A  F  P  K  F  N  S  L  L  F  Q  K  V  L  S  T  S  C  Q  *  R  R  L  H  D  V  V  L  K  S  P  N  Y  R  *  K  F  L  S  F  R  Y  L  M  A  I  A  D  E  K  D  G  K  V  W  G  L  F  K  L  P  F  R  N  A  Q  S  T  T  T  S  R  S  S  S  H  N  T  L  H  Y  R  S  Q  Q  H  Q  S  L  G  N  T  S  L  D  D  G  S  V  P  R  S  N  S  S  S  S  V  S  S  V  A  R  S  L  L  P  A  R  R  R  L  K  L  D  P  S  N  K  L  Y  F  P   : Y  E  P  G  K  Q  V  R  S  A  I  K  I  K  N  S  S  K  S  H  V  A  F  K  V  L  M  I  S  C  L  F  S  I  H  G  H  F  I  L  P  *  P  S  L  *  F  L  A  R  N  Y  F  E  N  I  S  *  H  I  Y  F  I  C  I  V  V  F  T  W  L  V  M  F  A  C  S  A  F  S  S  K  Q  L  H  P  K  A  V  S  C  V  L  P  E  Q  F  S  P  P  V  R  A  S  L  Q  P  V  I  F  </second_frame>
            <third_frame>   P  L  H  F  Q  N  S  T  P  C  Y  S  K  K  C  C  Q  Q  A  V  N  K  G  D  C  T  T  S  F  *  N  L  R  I  T  G  E  S  S  L  V  S  G  I  *  W  R  S  P  T  R  R  T  V  K  F  G  D  C  L  S  S  L  F  E  T  H  S  Q  R  R  L  R  V  R  L  R  I  I  L  F  I  T  A  V  N  N  I  N  L  S  E  I  L  L  W  M  M  D  R  F  L  V  A  T  V  P  A  P  F  L  Q  *  P  G  L  C  F  L  H  A  V  G  *  N  L  I  L  P  I  S  F  I  F  L  :  M  N  L  V  S  K  F  E  V  L  S  R  *  K  T  P  A  S  L  T  *  L  S  R  Y  S  *  F  L  V  S  S  P  Y  T  G  T  S  F  S  P  S  R  L  Y  S  F  *  L  E  T  I  L  R  I  Y  L  D  I  F  I  L  Y  A  L  L  F  L  H  G  W  *  C  L  P  V  L  H  L  V  P  N  N  C  T  Q  K  L  F  H  A  S  S  R  S  N  S  R  P  R  *  E  H  H  C  N  R  *  Y  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79198" stop="78904"/>
                    <exon start="76900" stop="76776"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFLSFRYLMAIADEKDGKVWGLFKLPFRNAQSTTTSRSSSHNTLHYRSQQHQSLGNTSLDDGSVPRSNSSSSVSSVARSLLPARRRLKLDPSNKLYFPYEPGKQVRSAIKIKNSSKSHVAFKVLMISCLFSIHGHFILP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="84687" PGL_stop="84129"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84687" e_stop="84129"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="84687" e_stop="84129" e_length="559"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84687" stop="84129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603644" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATGAGTTCCTCTATATATATCGTTCCATTACACTTGGAAATTTTACAAAACAGAATCGTCTTGATTAAAAAAAAAAAACTAGTTGTTACATGATCAGTAGAGTGCATCAAGGTGTGATGAGGGTGATTCATCAAGGGGTAAAGGATCATCAAGCAACAAGACAAGGTGACGGTGGAATCAAGACTCTTAAGGACTCGTCTTGTGGTGCTGGTGCTGGATCATCTTCAAGGCAGACATGGAAATTCTCTGGTGGTGTTGATACCAATGCTCTGATAAAAGCAGCAAAGGCTAAGAAGATTAAACAGGCGGAAGAGTCTTTTAGGACTGTCATGTTCTTGACCTGCTGGGGTCCTTAATCTCATCAGTGGCTCTGCTTTGACTCATCAAAATGAGTCTTTTGTACAAAATGTCATATATGTATATACACACTCATCTGAGTCTTGGGTTTAGGGTTTTTGTATATATATATATAAGGAAAGACCAGTGAGTTTTTTAGACTGGCTAGTGCATGTATATTTGATAGTTCACAGTGAATGAACTACAACTAGTACAGCTTT</gDNA_template>
            <first_frame> S  *  V  P  L  Y  I  S  F  H  Y  T  W  K  F  Y  K  T  E  S  S  *  L  K  K  K  N  *  L  L  H  D  Q  *  S  A  S  R  C  D  E  G  D  S  S  R  G  K  G  S  S  S  N  K  T  R  *  R  W  N  Q  D  S  *  G  L  V  L  W  C  W  C  W  I  I  F  K  A  D  M  E  I  L  W  W  C  *  Y  Q  C  S  D  K  S  S  K  G  *  E  D  *  T  G  G  R  V  F  *  D  C  H  V  L  D  L  L  G  S  L  I  S  S  V  A  L  L  *  L  I  K  M  S  L  L  Y  K  M  S  Y  M  Y  I  H  T  H  L  S  L  G  F  R  V  F  V  Y  I  Y  I  R  K  D  Q  *  V  F  *  T  G  *  C  M  Y  I  *  *  F  T  V  N  E  L  Q  L  V  Q  L  </first_frame>
            <second_frame>  H  E  F  L  Y  I  Y  R  S  I  T  L  G  N  F  T  K  Q  N  R  L  D  *  K  K  K  T  S  C  Y  M  I  S  R  V  H  Q  G  V  M  R  V  I  H  Q  G  V  K  D  H  Q  A  T  R  Q  G  D  G  G  I  K  T  L  K  D  S  S  C  G  A  G  A  G  S  S  S  R  Q  T  W  K  F  S  G  G  V  D  T  N  A  L  I  K  A  A  K  A  K  K  I  K  Q  A  E  E  S  F  R  T  V  M  F  L  T  C  W  G  P  *  S  H  Q  W  L  C  F  D  S  S  K  *  V  F  C  T  K  C  H  I  C  I  Y  T  L  I  *  V  L  G  L  G  F  L  Y  I  Y  I  *  G  K  T  S  E  F  F  R  L  A  S  A  C  I  F  D  S  S  Q  *  M  N  Y  N  *  Y  S  F </second_frame>
            <third_frame>   M  S  S  S  I  Y  I  V  P  L  H  L  E  I  L  Q  N  R  I  V  L  I  K  K  K  K  L  V  V  T  *  S  V  E  C  I  K  V  *  *  G  *  F  I  K  G  *  R  I  I  K  Q  Q  D  K  V  T  V  E  S  R  L  L  R  T  R  L  V  V  L  V  L  D  H  L  Q  G  R  H  G  N  S  L  V  V  L  I  P  M  L  *  *  K  Q  Q  R  L  R  R  L  N  R  R  K  S  L  L  G  L  S  C  S  *  P  A  G  V  L  N  L  I  S  G  S  A  L  T  H  Q  N  E  S  F  V  Q  N  V  I  Y  V  Y  T  H  S  S  E  S  W  V  *  G  F  C  I  Y  I  Y  K  E  R  P  V  S  F  L  D  W  L  V  H  V  Y  L  I  V  H  S  E  *  T  T  T  S  T  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84617" stop="84330"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKKTSCYMISRVHQGVMRVIHQGVKDHQATRQGDGGIKTLKDSSCGAGAGSSSRQTWKFSGGVDTNALIKAAKAKKIKQAEESFRTVMFLTCWGP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="87266" PGL_stop="89766"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87266" e_stop="87488"/>
            <exon e_start="87622" e_stop="87724"/>
            <exon e_start="88430" e_stop="88532"/>
            <exon e_start="88852" e_stop="89060"/>
            <exon e_start="89707" e_stop="89766"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.674" acc_prob="0.895" e_score="1.000"/>
          <exon-intron don_prob="0.849" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.838" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.962" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87266" e_stop="87488" e_length="223"/>
          </exon>
          <intron i_serial="1" don_prob="0.674" acc_prob="0.895">
            <gDNA_intron_boundary i_start="87489" i_stop="87621" i_length="133"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87622" e_stop="87724" e_length="103"/>
          </exon>
          <intron i_serial="2" don_prob="0.849" acc_prob="0.993">
            <gDNA_intron_boundary i_start="87725" i_stop="88429" i_length="705"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88430" e_stop="88532" e_length="103"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.838">
            <gDNA_intron_boundary i_start="88533" i_stop="88851" i_length="319"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="88852" e_stop="89060" e_length="209"/>
          </exon>
          <intron i_serial="4" don_prob="0.956" acc_prob="0.962">
            <gDNA_intron_boundary i_start="89061" i_stop="89706" i_length="646"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="89707" e_stop="89766" e_length="60"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87266" stop="87488"/>
              <exon start="87622" stop="87724"/>
              <exon start="88430" stop="88532"/>
              <exon start="88852" stop="89060"/>
              <exon start="89707" stop="89766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U572028" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCCACCACTTTCCACCATTACTCTTCAAGCAAACAAATTTAACCCAGGTACATTTCGCAAAAATAGTTGTACATTCCAGGAATAACAACTAACAACTACCTGTCTTGACTCCAATTTCATAGCCTTTATGGATCTTCTACGTTACTCCGCCTCCCGCTATCCTGCAGCTCATCTTCAACTTCCCTTCCGTACGCCACTTCGCCGGCGGTTCGTCGCCGTTAG : GTCAAGTTTGAGCCTTCCGTTCGCGGAGCAGAAAGCTAAGTATTATAGCGAGCTCGAAGCTGCTGTTGATGTTGTCGAGCGAGCTTGTCGTCTCTGCGTTGAC : GTGAAGAAGTCACTGTTCTCAAGTGATGGTAGGATTCTTGAGAAAAATGACCAGACCCCAGTCACCATTGCAGATTTTGGAGTGCAGGCTTTAGTTAGCTTGG : AGATGAACAAACTTTTTCCCTCCATACCTTTGGTGGCTGAAGAGGACTCTGCATTCTTGCGTTCAAATAATCTGGTTGGCTCAGTGGTTGATGTTGTAAAGGATAAAGCAACTTTAGGAGATGAAGTAACAGAAGATAATATTTTGAAAGCAATTGACAGAGGGGGAAAGGATGCTTATGTATTTGCGCCTGAGCCAGCCACTTACTGG : ATTCTGGATCCTATTGATGGTACACGAGGGTTTGTTAGAGGTAGTGAGGCTCTCTATGTG</gDNA_template>
            <first_frame> V  H  H  F  P  P  L  L  F  K  Q  T  N  L  T  Q  V  H  F  A  K  I  V  V  H  S  R  N  N  N  *  Q  L  P  V  L  T  P  I  S  *  P  L  W  I  F  Y  V  T  P  P  P  A  I  L  Q  L  I  F  N  F  P  S  V  R  H  F  A  G  G  S  S  P  L   : G  Q  V  *  A  F  R  S  R  S  R  K  L  S  I  I  A  S  S  K  L  L  L  M  L  S  S  E  L  V  V  S  A  L  T :   *  R  S  H  C  S  Q  V  M  V  G  F  L  R  K  M  T  R  P  Q  S  P  L  Q  I  L  E  C  R  L  *  L  A  W  :  R  *  T  N  F  F  P  P  Y  L  W  W  L  K  R  T  L  H  S  C  V  Q  I  I  W  L  A  Q  W  L  M  L  *  R  I  K  Q  L  *  E  M  K  *  Q  K  I  I  F  *  K  Q  L  T  E  G  E  R  M  L  M  Y  L  R  L  S  Q  P  L  T  G :   F  W  I  L  L  M  V  H  E  G  L  L  E  V  V  R  L  S  M   </first_frame>
            <second_frame>  S  T  T  F  H  H  Y  S  S  S  K  Q  I  *  P  R  Y  I  S  Q  K  *  L  Y  I  P  G  I  T  T  N  N  Y  L  S  *  L  Q  F  H  S  L  Y  G  S  S  T  L  L  R  L  P  L  S  C  S  S  S  S  T  S  L  P  Y  A  T  S  P  A  V  R  R  R  *  :  V  K  F  E  P  S  V  R  G  A  E  S  *  V  L  *  R  A  R  S  C  C  *  C  C  R  A  S  L  S  S  L  R  *   : R  E  E  V  T  V  L  K  *  W  *  D  S  *  E  K  *  P  D  P  S  H  H  C  R  F  W  S  A  G  F  S  *  L  G :   D  E  Q  T  F  S  L  H  T  F  G  G  *  R  G  L  C  I  L  A  F  K  *  S  G  W  L  S  G  *  C  C  K  G  *  S  N  F  R  R  *  S  N  R  R  *  Y  F  E  S  N  *  Q  R  G  K  G  C  L  C  I  C  A  *  A  S  H  L  L   : D  S  G  S  Y  *  W  Y  T  R  V  C  *  R  *  *  G  S  L  C  </second_frame>
            <third_frame>   P  P  L  S  T  I  T  L  Q  A  N  K  F  N  P  G  T  F  R  K  N  S  C  T  F  Q  E  *  Q  L  T  T  T  C  L  D  S  N  F  I  A  F  M  D  L  L  R  Y  S  A  S  R  Y  P  A  A  H  L  Q  L  P  F  R  T  P  L  R  R  R  F  V  A  V  R :   S  S  L  S  L  P  F  A  E  Q  K  A  K  Y  Y  S  E  L  E  A  A  V  D  V  V  E  R  A  C  R  L  C  V  D  :  V  K  K  S  L  F  S  S  D  G  R  I  L  E  K  N  D  Q  T  P  V  T  I  A  D  F  G  V  Q  A  L  V  S  L   : E  M  N  K  L  F  P  S  I  P  L  V  A  E  E  D  S  A  F  L  R  S  N  N  L  V  G  S  V  V  D  V  V  K  D  K  A  T  L  G  D  E  V  T  E  D  N  I  L  K  A  I  D  R  G  G  K  D  A  Y  V  F  A  P  E  P  A  T  Y  W  :  I  L  D  P  I  D  G  T  R  G  F  V  R  G  S  E  A  L  Y  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87352" stop="87488"/>
                    <exon start="87622" stop="87724"/>
                    <exon start="88430" stop="88532"/>
                    <exon start="88852" stop="89060"/>
                    <exon start="89707" stop="89766"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLTTTCLDSNFIAFMDLLRYSASRYPAAHLQLPFRTPLRRRFVAVRSSLSLPFAEQKAKYYSELEAAVDVVERACRLCVDVKKSLFSSDGRILEKNDQTPVTIADFGVQALVSLEMNKLFPSIPLVAEEDSAFLRSNNLVGSVVDVVKDKATLGDEVTEDNILKAIDRGGKDAYVFAPEPATYWILDPIDGTRGFVRGSEALYV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="92172" PGL_stop="98439"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94951" e_stop="96850"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="94951" e_stop="96850" e_length="1900"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94951" stop="96056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96053" stop="96850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U604002" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGGGATTGCTCGACATCGCACTGTCAGAAATACACCACAGCAGAACGGTGTAGCTGAGCGGATGAATCAAACACTTCTGGAGAGAGCAAGGTGCATGCTCTCTAATGCTGGGCTAGATAGAAGATTCTGGGCAGAAGCGGTTAGTACAGCTTGCTACTTGATTAACCGCGGACCACATACAGGCATACAGTGCAAGACACCTATGGAGATGTGGTCTGGAAAAGCTGCTGATTATTCAAATCTGAAAGCTTTTGGTTGTACGGCTTACTATCACGTCAGTGAAGGTAAGTTAGAACCAAGAGCTAAAAAGGGAGTATTTGTGGGCTACGGAGATGGAGTGAAAGGTTTCAGAATCTGGTCTCCAGCAGAAAAGAGGGTTATTATGAGCAGGAACGTTGTCTTTGATGAAAGTCCTCTGCTTAGAACCATTGTGAAGCCTACAACTACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACTCAGCCGGATGGTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGTTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTATATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGAAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAAAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> K  G  L  L  D  I  A  L  S  E  I  H  H  S  R  T  V  *  L  S  G  *  I  K  H  F  W  R  E  Q  G  A  C  S  L  M  L  G  *  I  E  D  S  G  Q  K  R  L  V  Q  L  A  T  *  L  T  A  D  H  I  Q  A  Y  S  A  R  H  L  W  R  C  G  L  E  K  L  L  I  I  Q  I  *  K  L  L  V  V  R  L  T  I  T  S  V  K  V  S  *  N  Q  E  L  K  R  E  Y  L  W  A  T  E  M  E  *  K  V  S  E  S  G  L  Q  Q  K  R  G  L  L  *  A  G  T  L  S  L  M  K  V  L  C  L  E  P  L  *  S  L  Q  L  R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  A  I  *  R  N  L  K  R  R  I  K  S  H  R  L  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  P  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  K  P  G  L  L  L  E  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *  L  S  R  M  V  S  K  F  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  G  I  K  G  L  T  A  I  W  *  S  W  V  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  M  M  I  H  S  S  I  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  I  F  R  R  S  W  R  G  L  A  C  L  H  L  S  P  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  K  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  R  D  C  S  T  S  H  C  Q  K  Y  T  T  A  E  R  C  S  *  A  D  E  S  N  T  S  G  E  S  K  V  H  A  L  *  C  W  A  R  *  K  I  L  G  R  S  G  *  Y  S  L  L  L  D  *  P  R  T  T  Y  R  H  T  V  Q  D  T  Y  G  D  V  V  W  K  S  C  *  L  F  K  S  E  S  F  W  L  Y  G  L  L  S  R  Q  *  R  *  V  R  T  K  S  *  K  G  S  I  C  G  L  R  R  W  S  E  R  F  Q  N  L  V  S  S  R  K  E  G  Y  Y  E  Q  E  R  C  L  *  *  K  S  S  A  *  N  H  C  E  A  Y  N  Y  V  R  N  *  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  *  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  F  *  F  *  K  M  V  C  R  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  *  S  Q  G  C  C  *  R  F  Q  P  K  R  G  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  C  T  S  E  S  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  R  D  I  H  D  S  A  G  W  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  V  *  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  *  *  F  I  H  L  S  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  D  F  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  Y  S  E  G  L  G  E  V  W  H  V  F  I  *  A  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  E  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   G  I  A  R  H  R  T  V  R  N  T  P  Q  Q  N  G  V  A  E  R  M  N  Q  T  L  L  E  R  A  R  C  M  L  S  N  A  G  L  D  R  R  F  W  A  E  A  V  S  T  A  C  Y  L  I  N  R  G  P  H  T  G  I  Q  C  K  T  P  M  E  M  W  S  G  K  A  A  D  Y  S  N  L  K  A  F  G  C  T  A  Y  Y  H  V  S  E  G  K  L  E  P  R  A  K  K  G  V  F  V  G  Y  G  D  G  V  K  G  F  R  I  W  S  P  A  E  K  R  V  I  M  S  R  N  V  V  F  D  E  S  P  L  L  R  T  I  V  K  P  T  T  T  S  E  T  R  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  S  D  S  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  A  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  E  I  Y  M  T  Q  P  D  G  F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  N  D  D  S  F  I  Y  L  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  K  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  K  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94953" stop="96848"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1896</number_coding_nucleotides>
                  <number_encoded_amino_acids>632</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GIARHRTVRNTPQQNGVAERMNQTLLERARCMLSNAGLDRRFWAEAVSTACYLINRGPHTGIQCKTPMEMWSGKAADYSNLKAFGCTAYYHVSEGKLEPRAKKGVFVGYGDGVKGFRIWSPAEKRVIMSRNVVFDESPLLRTIVKPTTTSETRSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKKYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLKGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="94610" e_stop="94908"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="94610" e_stop="94908" e_length="299"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94610" stop="94908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603118" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTAGAGTTTTGTGAACATTGTGTTTTTGGAAAACTACATCGCAACAAGTTTCCAAAGGCCATTCATAGAACAAAAGGCACACTTGATTATATCCATTCTGATTGCTGGGGTCCATGCCGTGTTGAGTCTTTGTGAGGCTGCAGATTTTTTGTGTCCATTATTGATGACTACTCAAGGATGACTTGGGTGTACATGATGAAGCATAAAAGTGAAGCCTTCCAGAAGTTCAAGGAGTGGAAAATTTTGATGGAAAATCAAACAGGGAAGAAGATCAAGAGGTTGCGAACTGATAATGGGC</gDNA_template>
            <first_frame> P  R  V  L  *  T  L  C  F  W  K  T  T  S  Q  Q  V  S  K  G  H  S  *  N  K  R  H  T  *  L  Y  P  F  *  L  L  G  S  M  P  C  *  V  F  V  R  L  Q  I  F  C  V  H  Y  *  *  L  L  K  D  D  L  G  V  H  D  E  A  *  K  *  S  L  P  E  V  Q  G  V  E  N  F  D  G  K  S  N  R  E  E  D  Q  E  V  A  N  *  *  W   </first_frame>
            <second_frame>  L  E  F  C  E  H  C  V  F  G  K  L  H  R  N  K  F  P  K  A  I  H  R  T  K  G  T  L  D  Y  I  H  S  D  C  W  G  P  C  R  V  E  S  L  *  G  C  R  F  F  V  S  I  I  D  D  Y  S  R  M  T  W  V  Y  M  M  K  H  K  S  E  A  F  Q  K  F  K  E  W  K  I  L  M  E  N  Q  T  G  K  K  I  K  R  L  R  T  D  N  G  </second_frame>
            <third_frame>   *  S  F  V  N  I  V  F  L  E  N  Y  I  A  T  S  F  Q  R  P  F  I  E  Q  K  A  H  L  I  I  S  I  L  I  A  G  V  H  A  V  L  S  L  C  E  A  A  D  F  L  C  P  L  L  M  T  T  Q  G  *  L  G  C  T  *  *  S  I  K  V  K  P  S  R  S  S  R  S  G  K  F  *  W  K  I  K  Q  G  R  R  S  R  G  C  E  L  I  M  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0031A21.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="92172" e_stop="92204"/>
            <exon e_start="92274" e_stop="92324"/>
            <exon e_start="97989" e_stop="98439"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.997" e_score="0.909"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="0.980"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="92172" e_stop="92204" e_length="33"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.997">
            <gDNA_intron_boundary i_start="92205" i_stop="92273" i_length="69"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="92274" e_stop="92324" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="92325" i_stop="97988" i_length="5664"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="97989" e_stop="98439" e_length="451"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92172" stop="92204"/>
              <exon start="92274" stop="92324"/>
              <exon start="97989" stop="98439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U568173" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCAGGGGAAGAAGGCGACATCTATTATCAAG : GTCTGGGACCATGCTGTTGGAATCATATGTGTCCATGAAGCTGGAGGGAAG : GTGACTGACTGGGAAGGAAGTTCACTTGATTTTGCAGCAGATCAAACTGAACGGAGACTCATCTTTCCTTCAGGCGGTGTTCTTGTGACTAATGGGAGCTTACATAGCAAGATTATCGAAATGATCTCTTCAAATTCATCAGTTCTTTGACAGGCTTTTGGCATTATTGTGACAAAATCAATAGTCAGATACTAATGAAGATTTCCTCCAATTCATCAATTGTTTAATGACACTTGCATTCTTTTGACGAATCACAGCATATAGAAGTATACATATCAATGTCTCTCCATTTTCTTCCTCCTCGTACTCATCAGTATCTCTCTGTTGTTTCTCATAAATACCTGTATCGTTCTTCTTTCATCTGTATGGAAGGATAATATTGGTGGAGAATGATTCATGACTGCAGTCTAGCTTATAAATCAATGTTCTTTTTGTTTCTTCCCTTCATTGA</gDNA_template>
            <first_frame> I  Q  G  K  K  A  T  S  I  I  K  :  V  W  D  H  A  V  G  I  I  C  V  H  E  A  G  G  K  :  V  T  D  W  E  G  S  S  L  D  F  A  A  D  Q  T  E  R  R  L  I  F  P  S  G  G  V  L  V  T  N  G  S  L  H  S  K  I  I  E  M  I  S  S  N  S  S  V  L  *  Q  A  F  G  I  I  V  T  K  S  I  V  R  Y  *  *  R  F  P  P  I  H  Q  L  F  N  D  T  C  I  L  L  T  N  H  S  I  *  K  Y  T  Y  Q  C  L  S  I  F  F  L  L  V  L  I  S  I  S  L  L  F  L  I  N  T  C  I  V  L  L  S  S  V  W  K  D  N  I  G  G  E  *  F  M  T  A  V  *  L  I  N  Q  C  S  F  C  F  F  P  S  L  </first_frame>
            <second_frame>  F  R  G  R  R  R  H  L  L  S  R :   S  G  T  M  L  L  E  S  Y  V  S  M  K  L  E  G  R :   *  L  T  G  K  E  V  H  L  I  L  Q  Q  I  K  L  N  G  D  S  S  F  L  Q  A  V  F  L  *  L  M  G  A  Y  I  A  R  L  S  K  *  S  L  Q  I  H  Q  F  F  D  R  L  L  A  L  L  *  Q  N  Q  *  S  D  T  N  E  D  F  L  Q  F  I  N  C  L  M  T  L  A  F  F  *  R  I  T  A  Y  R  S  I  H  I  N  V  S  P  F  S  S  S  S  Y  S  S  V  S  L  C  C  F  S  *  I  P  V  S  F  F  F  H  L  Y  G  R  I  I  L  V  E  N  D  S  *  L  Q  S  S  L  *  I  N  V  L  F  V  S  S  L  H  * </second_frame>
            <third_frame>   S  G  E  E  G  D  I  Y  Y  Q   : G  L  G  P  C  C  W  N  H  M  C  P  *  S  W  R  E   : G  D  *  L  G  R  K  F  T  *  F  C  S  R  S  N  *  T  E  T  H  L  S  F  R  R  C  S  C  D  *  W  E  L  T  *  Q  D  Y  R  N  D  L  F  K  F  I  S  S  L  T  G  F  W  H  Y  C  D  K  I  N  S  Q  I  L  M  K  I  S  S  N  S  S  I  V  *  *  H  L  H  S  F  D  E  S  Q  H  I  E  V  Y  I  S  M  S  L  H  F  L  P  P  R  T  H  Q  Y  L  S  V  V  S  H  K  Y  L  Y  R  S  S  F  I  C  M  E  G  *  Y  W  W  R  M  I  H  D  C  S  L  A  Y  K  S  M  F  F  L  F  L  P  F  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92172" stop="92204"/>
                    <exon start="92274" stop="92324"/>
                    <exon start="97989" stop="98138"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQGKKATSIIKVWDHAVGIICVHEAGGKVTDWEGSSLDFAADQTERRLIFPSGGVLVTNGSLHSKIIEMISSNSSVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="99207" PGL_stop="100095"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99207" e_stop="100095"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="99207" e_stop="100095" e_length="889"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99207" stop="100095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U588563" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTTGTTTTATATATTATAATAACAGCTTTTCCCCCAAAACTTGTGTCAATATAATTGAAAAATACATTGGTGGATTCCTAGCAGAAGCAAAGAAAAAAAAATCACCAGGAGATGTTTTCTCAACTTACTTAAGCCTGGGAGGCAAGAGTTACTTGGTACATGTGTTGGTGGAAGTTAGCAAGTAGCCAGCTAGGTGCATACAAGCTGGCCAGACACCATGTGAAGGTACCAGACAATGGTAACATAATATACTAACCAGTTCAGATACATATCCACTGGTCCTTTCACCTTGAGGCTCATAATTTTGAGCTTCACTTCAGCTCACTCTTTTGATCCTTCGGTTTTTCATTTTTATCTGGATGCTCTGCAAATTTGATTACTATGACATTGACTTAAGAAAATCTGAACAAAATACTTGCATGACACAATTACTCAGCTACAAATAGACAAAAACAACTTGAAAGAGAAGGACATAAACTAAGAGTGAAGAACATTACCAGCAGCTATCATCAGTGAGGACGCATGAAGCAGTTCTTGGTCCAGTTGTTTGGAACTAATGCACTGCAGTTGACAGCAACAAGTCAGCAACCATGTATGCACATTAATGTGTGTACACACGTCAATACATATTCTCAAAAGAGTTTCAAGCCAGAGTGACACTAAAAGAAAGAGGAGCTAGAACAGAGCGAGGTTGCCAAAACGGAAGAGAGACATGAAATCATGGTAATTTTGTCAACCTTGAAATGTACTTGAGACCTTTTTTATATAGCCAAGAAAAATCCGGGGGCCGCGGCGTATGGTTAAACCTTGTTGTTTGGTGGACAATGGACCCGCTCCTCTACTCTTCTACACTTAAATACTAGGCTTTTGTCTGTCGTGGATTCAAAC</gDNA_template>
            <first_frame> T  C  F  I  Y  Y  N  N  S  F  S  P  K  T  C  V  N  I  I  E  K  Y  I  G  G  F  L  A  E  A  K  K  K  K  S  P  G  D  V  F  S  T  Y  L  S  L  G  G  K  S  Y  L  V  H  V  L  V  E  V  S  K  *  P  A  R  C  I  Q  A  G  Q  T  P  C  E  G  T  R  Q  W  *  H  N  I  L  T  S  S  D  T  Y  P  L  V  L  S  P  *  G  S  *  F  *  A  S  L  Q  L  T  L  L  I  L  R  F  F  I  F  I  W  M  L  C  K  F  D  Y  Y  D  I  D  L  R  K  S  E  Q  N  T  C  M  T  Q  L  L  S  Y  K  *  T  K  T  T  *  K  R  R  T  *  T  K  S  E  E  H  Y  Q  Q  L  S  S  V  R  T  H  E  A  V  L  G  P  V  V  W  N  *  C  T  A  V  D  S  N  K  S  A  T  M  Y  A  H  *  C  V  Y  T  R  Q  Y  I  F  S  K  E  F  Q  A  R  V  T  L  K  E  R  G  A  R  T  E  R  G  C  Q  N  G  R  E  T  *  N  H  G  N  F  V  N  L  E  M  Y  L  R  P  F  L  Y  S  Q  E  K  S  G  G  R  G  V  W  L  N  L  V  V  W  W  T  M  D  P  L  L  Y  S  S  T  L  K  Y  *  A  F  V  C  R  G  F  K  </first_frame>
            <second_frame>  L  V  L  Y  I  I  I  T  A  F  P  P  K  L  V  S  I  *  L  K  N  T  L  V  D  S  *  Q  K  Q  R  K  K  N  H  Q  E  M  F  S  Q  L  T  *  A  W  E  A  R  V  T  W  Y  M  C  W  W  K  L  A  S  S  Q  L  G  A  Y  K  L  A  R  H  H  V  K  V  P  D  N  G  N  I  I  Y  *  P  V  Q  I  H  I  H  W  S  F  H  L  E  A  H  N  F  E  L  H  F  S  S  L  F  *  S  F  G  F  S  F  L  S  G  C  S  A  N  L  I  T  M  T  L  T  *  E  N  L  N  K  I  L  A  *  H  N  Y  S  A  T  N  R  Q  K  Q  L  E  R  E  G  H  K  L  R  V  K  N  I  T  S  S  Y  H  Q  *  G  R  M  K  Q  F  L  V  Q  L  F  G  T  N  A  L  Q  L  T  A  T  S  Q  Q  P  C  M  H  I  N  V  C  T  H  V  N  T  Y  S  Q  K  S  F  K  P  E  *  H  *  K  K  E  E  L  E  Q  S  E  V  A  K  T  E  E  R  H  E  I  M  V  I  L  S  T  L  K  C  T  *  D  L  F  Y  I  A  K  K  N  P  G  A  A  A  Y  G  *  T  L  L  F  G  G  Q  W  T  R  S  S  T  L  L  H  L  N  T  R  L  L  S  V  V  D  S  N </second_frame>
            <third_frame>   L  F  Y  I  L  *  *  Q  L  F  P  Q  N  L  C  Q  Y  N  *  K  I  H  W  W  I  P  S  R  S  K  E  K  K  I  T  R  R  C  F  L  N  L  L  K  P  G  R  Q  E  L  L  G  T  C  V  G  G  S  *  Q  V  A  S  *  V  H  T  S  W  P  D  T  M  *  R  Y  Q  T  M  V  T  *  Y  T  N  Q  F  R  Y  I  S  T  G  P  F  T  L  R  L  I  I  L  S  F  T  S  A  H  S  F  D  P  S  V  F  H  F  Y  L  D  A  L  Q  I  *  L  L  *  H  *  L  K  K  I  *  T  K  Y  L  H  D  T  I  T  Q  L  Q  I  D  K  N  N  L  K  E  K  D  I  N  *  E  *  R  T  L  P  A  A  I  I  S  E  D  A  *  S  S  S  W  S  S  C  L  E  L  M  H  C  S  *  Q  Q  Q  V  S  N  H  V  C  T  L  M  C  V  H  T  S  I  H  I  L  K  R  V  S  S  Q  S  D  T  K  R  K  R  S  *  N  R  A  R  L  P  K  R  K  R  D  M  K  S  W  *  F  C  Q  P  *  N  V  L  E  T  F  F  I  *  P  R  K  I  R  G  P  R  R  M  V  K  P  C  C  L  V  D  N  G  P  A  P  L  L  F  Y  T  *  I  L  G  F  C  L  S  W  I  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0031A21.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="100846" PGL_stop="99338"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100846" e_stop="100626"/>
            <exon e_start="99768" e_stop="99705"/>
            <exon e_start="99586" e_stop="99338"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.992" e_score="0.982"/>
          <exon-intron don_prob="0.999" acc_prob="0.862" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="100846" e_stop="100626" e_length="221"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.992">
            <gDNA_intron_boundary i_start="100625" i_stop="99769" i_length="857"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="99768" e_stop="99705" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.862">
            <gDNA_intron_boundary i_start="99704" i_stop="99587" i_length="118"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="99586" e_stop="99338" e_length="249"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100846" stop="100626"/>
              <exon start="99768" stop="99705"/>
              <exon start="99586" stop="99338"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U588564" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAATCTCCGCGTCTGCAATGATTGCCACAATTGGATAAAGTGTGTGTCGAAAGTTGCAAATCGGGCCATTATTGTACGGGATGCATACAGGTTTCATCATTTTGCAGATGGTCAATGTTCCTGCAATGATTTCTGGTAATTGGAACTATTGAAGGTTGAGACGACATAGTAAACTTCCAGTGTTTGAGATTGATGCTCTGGATACTTTTATCAATAGAG : TGCATTAGTTCCAAACAACTGGACCAAGAACTGCTTCATGCGTCCTCACTGATGATAGCTGCTG : TAATCAAATTTGCAGAGCATCCAGATAAAAATGAAAAACCGAAGGATCAAAAGAGTGAGCTGAAGTGAAGCTCAAAATTATGAGCCTCAAGGTGAAAGGACCAGTGGATATGTATCTGAACTGGTTAGTATATTATGTTACCATTGTCTGGTACCTTCACATGGTGTCTGGCCAGCTTGTATGCACCTAGCTGGCTACTTGCTAACTTCCACCAACACATGTACCAAGTAACTCTTGCCTCCCAGGCTT</gDNA_template>
            <first_frame> K  N  L  R  V  C  N  D  C  H  N  W  I  K  C  V  S  K  V  A  N  R  A  I  I  V  R  D  A  Y  R  F  H  H  F  A  D  G  Q  C  S  C  N  D  F  W  *  L  E  L  L  K  V  E  T  T  *  *  T  S  S  V  *  D  *  C  S  G  Y  F  Y  Q  *  S :   A  L  V  P  N  N  W  T  K  N  C  F  M  R  P  H  *  *  *  L  L  :  *  S  N  L  Q  S  I  Q  I  K  M  K  N  R  R  I  K  R  V  S  *  S  E  A  Q  N  Y  E  P  Q  G  E  R  T  S  G  Y  V  S  E  L  V  S  I  L  C  Y  H  C  L  V  P  S  H  G  V  W  P  A  C  M  H  L  A  G  Y  L  L  T  S  T  N  T  C  T  K  *  L  L  P  P  R  L </first_frame>
            <second_frame>  R  I  S  A  S  A  M  I  A  T  I  G  *  S  V  C  R  K  L  Q  I  G  P  L  L  Y  G  M  H  T  G  F  I  I  L  Q  M  V  N  V  P  A  M  I  S  G  N  W  N  Y  *  R  L  R  R  H  S  K  L  P  V  F  E  I  D  A  L  D  T  F  I  N  R   : V  H  *  F  Q  T  T  G  P  R  T  A  S  C  V  L  T  D  D  S  C  C :   N  Q  I  C  R  A  S  R  *  K  *  K  T  E  G  S  K  E  *  A  E  V  K  L  K  I  M  S  L  K  V  K  G  P  V  D  M  Y  L  N  W  L  V  Y  Y  V  T  I  V  W  Y  L  H  M  V  S  G  Q  L  V  C  T  *  L  A  T  C  *  L  P  P  T  H  V  P  S  N  S  C  L  P  G   </second_frame>
            <third_frame>   E  S  P  R  L  Q  *  L  P  Q  L  D  K  V  C  V  E  S  C  K  S  G  H  Y  C  T  G  C  I  Q  V  S  S  F  C  R  W  S  M  F  L  Q  *  F  L  V  I  G  T  I  E  G  *  D  D  I  V  N  F  Q  C  L  R  L  M  L  W  I  L  L  S  I  E  :  C  I  S  S  K  Q  L  D  Q  E  L  L  H  A  S  S  L  M  I  A  A   : V  I  K  F  A  E  H  P  D  K  N  E  K  P  K  D  Q  K  S  E  L  K  *  S  S  K  L  *  A  S  R  *  K  D  Q  W  I  C  I  *  T  G  *  Y  I  M  L  P  L  S  G  T  F  T  W  C  L  A  S  L  Y  A  P  S  W  L  L  A  N  F  H  Q  H  M  Y  Q  V  T  L  A  S  Q  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0031A21.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="109940" PGL_stop="110509"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109940" e_stop="110509"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="109940" e_stop="110509" e_length="570"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109940" stop="110509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600100" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAACTTTTTTCCTTGATTTCAGGATTTCTTATTTGTGTCTCTAACTGTTAAGCTTTCCCCACCAAAATTGCTGCAACTATAGAGATACTAGTGCTGGTAGGCATCTTTCAGATACTTATTTCATTGTGTACAATGGGTTTTCTTCAAAAGTCATGTTCACTAGAATAATATTCTGGAGGAGGGGGACTCTATGCGATATTTTAGTGTCTGCTATTCTTCAATGTCAGTCCACATATCTGAAACTATTTGAGTAGAGTTCATAATACCTGAAACTATTTGATCAGGATATTGATTAAATTAGTTGTCTTCGAGTTACTTATATAACATCAGATTCTTGTTATACTTGAAAAAGCTTATAATCCACAGTTCGTTACTTGACTTCTTTGACCACACATTATTTCAGTTATTGAAATCCATCTAAGATGATTATATTTGTCATTGATCTGCTTGATTAGTCTTGTGAAGCACCACAAAACACCAACACACCCTTCTTCTGTGTAGGAAATTTGTTTTTTAGCAGTATTTTGTTATTAGCTTATGTGGAATTATCATTATCTAATTCATTTTC</gDNA_template>
            <first_frame> K  N  F  F  P  *  F  Q  D  F  L  F  V  S  L  T  V  K  L  S  P  P  K  L  L  Q  L  *  R  Y  *  C  W  *  A  S  F  R  Y  L  F  H  C  V  Q  W  V  F  F  K  S  H  V  H  *  N  N  I  L  E  E  G  D  S  M  R  Y  F  S  V  C  Y  S  S  M  S  V  H  I  S  E  T  I  *  V  E  F  I  I  P  E  T  I  *  S  G  Y  *  L  N  *  L  S  S  S  Y  L  Y  N  I  R  F  L  L  Y  L  K  K  L  I  I  H  S  S  L  L  D  F  F  D  H  T  L  F  Q  L  L  K  S  I  *  D  D  Y  I  C  H  *  S  A  *  L  V  L  *  S  T  T  K  H  Q  H  T  L  L  L  C  R  K  F  V  F  *  Q  Y  F  V  I  S  L  C  G  I  I  I  I  *  F  I  F </first_frame>
            <second_frame>  R  T  F  F  L  D  F  R  I  S  Y  L  C  L  *  L  L  S  F  P  H  Q  N  C  C  N  Y  R  D  T  S  A  G  R  H  L  S  D  T  Y  F  I  V  Y  N  G  F  S  S  K  V  M  F  T  R  I  I  F  W  R  R  G  T  L  C  D  I  L  V  S  A  I  L  Q  C  Q  S  T  Y  L  K  L  F  E  *  S  S  *  Y  L  K  L  F  D  Q  D  I  D  *  I  S  C  L  R  V  T  Y  I  T  S  D  S  C  Y  T  *  K  S  L  *  S  T  V  R  Y  L  T  S  L  T  T  H  Y  F  S  Y  *  N  P  S  K  M  I  I  F  V  I  D  L  L  D  *  S  C  E  A  P  Q  N  T  N  T  P  F  F  C  V  G  N  L  F  F  S  S  I  L  L  L  A  Y  V  E  L  S  L  S  N  S  F   </second_frame>
            <third_frame>   E  L  F  S  L  I  S  G  F  L  I  C  V  S  N  C  *  A  F  P  T  K  I  A  A  T  I  E  I  L  V  L  V  G  I  F  Q  I  L  I  S  L  C  T  M  G  F  L  Q  K  S  C  S  L  E  *  Y  S  G  G  G  G  L  Y  A  I  F  *  C  L  L  F  F  N  V  S  P  H  I  *  N  Y  L  S  R  V  H  N  T  *  N  Y  L  I  R  I  L  I  K  L  V  V  F  E  L  L  I  *  H  Q  I  L  V  I  L  E  K  A  Y  N  P  Q  F  V  T  *  L  L  *  P  H  I  I  S  V  I  E  I  H  L  R  *  L  Y  L  S  L  I  C  L  I  S  L  V  K  H  H  K  T  P  T  H  P  S  S  V  *  E  I  C  F  L  A  V  F  C  Y  *  L  M  W  N  Y  H  Y  L  I  H  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109986" stop="110195"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLSFPHQNCCNYRDTSAGRHLSDTYFIVYNGFSSKVMFTRIIFWRRGTLCDILVSAILQCQSTYLKLFE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="122935" PGL_stop="124300"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122935" e_stop="122991"/>
            <exon e_start="123089" e_stop="123218"/>
            <exon e_start="123372" e_stop="124300"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="122935" e_stop="122991" e_length="57"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="122992" i_stop="123088" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="123089" e_stop="123218" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="123219" i_stop="123371" i_length="153"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="123372" e_stop="124300" e_length="929"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122935" stop="122991"/>
              <exon start="123089" stop="123218"/>
              <exon start="123372" stop="124300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U574375" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGATTACATTCAAAAACATGGATATGGTAATTGGAGGACTCTTCCAAAGAATGCTG : GGCTTCAAAGATGTGGAAAAAGTTGTAGGCTTCGTTGGACTAATTATCTAAGGCCAGATATTAAAAGAGGAAGATTTTCATTTGAAGAAGAGGAGACTATCATTCAACTCCACAGTATTTTAGGCAACAA : GTGGTCTGCTATTGCTGCACGTTTACCTGGTAGAACTGATAATGAAATCAAGAACTATTGGAATACGCATATCAGGAAAAGGCTTTTGAGAATGGGGATTGATCCAGTGACACACAGTCCACGTCTTGATCTTCTTGATCTTTCTTCCATTTTAAACCATTCAATTTACAATAATTCATCTCATCATCAAATGAACCTTTCAAGATTGTTAGGCCATGTGCAACCTTTGGTTAATCCTGAACTCTTGAGATTAGCTACTTCTCTTATATCATCCCAACGCCAAAACACAAACAACTTTTTAATCCCAAATAATCTTCAAGAAAATCAAATAATTTGCCAAAACCAATTGCCACAAATGGTCCAAAATAACCAAATTCAAGATTTTTCAACTATAAGTACAACCCCATGTGTTCCATTTTCTAGTCATGAAGCTCAACTCATGCAGCCACCAATTACAACAAAAATAGAGGATTTCTCATCAGATCTTGAAAACTTTGGTAACTCACAAAATAATTGTCAAGTTATTAATGATGATGAGTGGCAATTAAGCAATGGTGTAACGGATGATTATTTTCCTTTACAAAACTATGGGTACTATGATCCTCTAACGTCCGATGAAAACAACAACAATTTTAATCTCCAGTCAGTTGTTTTGTCGAATTTATCGACACCTTCATCAAGTCCTACGCCATTGAATTCAAATTCAACTTACTTCAACAATAGCAGCAGCACAACTACTGAAGATGAAAGAGATAGCTACTGCAGCAACATGTTGAACTTTGATAATATTCCAAATATCTGGGATACTACTAATGAATTTATGTAATTTTTACGCTTTTTTTTTTTTAAAGGAACAAACAAACAGTTCGAAAGAGGTGTTTTATTTTTTTTTTTTACCTCTGAGCTTTTGGACATGTTGTTGTTTCCTG</gDNA_template>
            <first_frame> L  I  T  F  K  N  M  D  M  V  I  G  G  L  F  Q  R  M  L  :  G  F  K  D  V  E  K  V  V  G  F  V  G  L  I  I  *  G  Q  I  L  K  E  E  D  F  H  L  K  K  R  R  L  S  F  N  S  T  V  F  *  A  T   : S  G  L  L  L  L  H  V  Y  L  V  E  L  I  M  K  S  R  T  I  G  I  R  I  S  G  K  G  F  *  E  W  G  L  I  Q  *  H  T  V  H  V  L  I  F  L  I  F  L  P  F  *  T  I  Q  F  T  I  I  H  L  I  I  K  *  T  F  Q  D  C  *  A  M  C  N  L  W  L  I  L  N  S  *  D  *  L  L  L  L  Y  H  P  N  A  K  T  Q  T  T  F  *  S  Q  I  I  F  K  K  I  K  *  F  A  K  T  N  C  H  K  W  S  K  I  T  K  F  K  I  F  Q  L  *  V  Q  P  H  V  F  H  F  L  V  M  K  L  N  S  C  S  H  Q  L  Q  Q  K  *  R  I  S  H  Q  I  L  K  T  L  V  T  H  K  I  I  V  K  L  L  M  M  M  S  G  N  *  A  M  V  *  R  M  I  I  F  L  Y  K  T  M  G  T  M  I  L  *  R  P  M  K  T  T  T  I  L  I  S  S  Q  L  F  C  R  I  Y  R  H  L  H  Q  V  L  R  H  *  I  Q  I  Q  L  T  S  T  I  A  A  A  Q  L  L  K  M  K  E  I  A  T  A  A  T  C  *  T  L  I  I  F  Q  I  S  G  I  L  L  M  N  L  C  N  F  Y  A  F  F  F  L  K  E  Q  T  N  S  S  K  E  V  F  Y  F  F  F  L  P  L  S  F  W  T  C  C  C  F  L </first_frame>
            <second_frame>  *  L  H  S  K  T  W  I  W  *  L  E  D  S  S  K  E  C  W :   A  S  K  M  W  K  K  L  *  A  S  L  D  *  L  S  K  A  R  Y  *  K  R  K  I  F  I  *  R  R  G  D  Y  H  S  T  P  Q  Y  F  R  Q  Q  :  V  V  C  Y  C  C  T  F  T  W  *  N  *  *  *  N  Q  E  L  L  E  Y  A  Y  Q  E  K  A  F  E  N  G  D  *  S  S  D  T  Q  S  T  S  *  S  S  *  S  F  F  H  F  K  P  F  N  L  Q  *  F  I  S  S  S  N  E  P  F  K  I  V  R  P  C  A  T  F  G  *  S  *  T  L  E  I  S  Y  F  S  Y  I  I  P  T  P  K  H  K  Q  L  F  N  P  K  *  S  S  R  K  S  N  N  L  P  K  P  I  A  T  N  G  P  K  *  P  N  S  R  F  F  N  Y  K  Y  N  P  M  C  S  I  F  *  S  *  S  S  T  H  A  A  T  N  Y  N  K  N  R  G  F  L  I  R  S  *  K  L  W  *  L  T  K  *  L  S  S  Y  *  *  *  *  V  A  I  K  Q  W  C  N  G  *  L  F  S  F  T  K  L  W  V  L  *  S  S  N  V  R  *  K  Q  Q  Q  F  *  S  P  V  S  C  F  V  E  F  I  D  T  F  I  K  S  Y  A  I  E  F  K  F  N  L  L  Q  Q  *  Q  Q  H  N  Y  *  R  *  K  R  *  L  L  Q  Q  H  V  E  L  *  *  Y  S  K  Y  L  G  Y  Y  *  *  I  Y  V  I  F  T  L  F  F  F  *  R  N  K  Q  T  V  R  K  R  C  F  I  F  F  F  Y  L  *  A  F  G  H  V  V  V  S   </second_frame>
            <third_frame>   D  Y  I  Q  K  H  G  Y  G  N  W  R  T  L  P  K  N  A   : G  L  Q  R  C  G  K  S  C  R  L  R  W  T  N  Y  L  R  P  D  I  K  R  G  R  F  S  F  E  E  E  E  T  I  I  Q  L  H  S  I  L  G  N  K :   W  S  A  I  A  A  R  L  P  G  R  T  D  N  E  I  K  N  Y  W  N  T  H  I  R  K  R  L  L  R  M  G  I  D  P  V  T  H  S  P  R  L  D  L  L  D  L  S  S  I  L  N  H  S  I  Y  N  N  S  S  H  H  Q  M  N  L  S  R  L  L  G  H  V  Q  P  L  V  N  P  E  L  L  R  L  A  T  S  L  I  S  S  Q  R  Q  N  T  N  N  F  L  I  P  N  N  L  Q  E  N  Q  I  I  C  Q  N  Q  L  P  Q  M  V  Q  N  N  Q  I  Q  D  F  S  T  I  S  T  T  P  C  V  P  F  S  S  H  E  A  Q  L  M  Q  P  P  I  T  T  K  I  E  D  F  S  S  D  L  E  N  F  G  N  S  Q  N  N  C  Q  V  I  N  D  D  E  W  Q  L  S  N  G  V  T  D  D  Y  F  P  L  Q  N  Y  G  Y  Y  D  P  L  T  S  D  E  N  N  N  N  F  N  L  Q  S  V  V  L  S  N  L  S  T  P  S  S  S  P  T  P  L  N  S  N  S  T  Y  F  N  N  S  S  S  T  T  T  E  D  E  R  D  S  Y  C  S  N  M  L  N  F  D  N  I  P  N  I  W  D  T  T  N  E  F  M  *  F  L  R  F  F  F  F  K  G  T  N  K  Q  F  E  R  G  V  L  F  F  F  F  T  S  E  L  L  D  M  L  L  F  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0031A21.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122937" stop="122991"/>
                    <exon start="123089" stop="123218"/>
                    <exon start="123372" stop="124197"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1008</number_coding_nucleotides>
                  <number_encoded_amino_acids>336</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILNHSIYNNSSHHQMNLSRLLGHVQPLVNPELLRLATSLISSQRQNTNNFLIPNNLQENQIICQNQLPQMVQNNQIQDFSTISTTPCVPFSSHEAQLMQPPITTKIEDFSSDLENFGNSQNNCQVINDDEWQLSNGVTDDYFPLQNYGYYDPLTSDENNNNFNLQSVVLSNLSTPSSSPTPLNSNSTYFNNSSSTTTEDERDSYCSNMLNFDNIPNIWDTTNEFM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 32 chains have been computed
$ 
$ memory statistics:
$ 41392 bytes spliced alignments in total
$ 20 spliced alignments have been stored
$ 2069 bytes was the average size of a spliced alignment
$ 24488 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1530 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 33 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:30:49
-->
