<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:37:19"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG34-R" ref_strand="+" ref_description="TG34-R">
      <seq>gctgcaggtaaatgagttctctatatttcctattgtgtagttctttacatctacaaacaagttggcgtcagctgtatgaatcgtcacttacgatattacaccatttaaactcatctcatgccattattatgcaaatacaaataaaaaacttttaaatttaaattctctatattttctacacttaaaaatctctgtaaggtaatattatgcagttttacgtgcatacaaaagaacctctcacctacctaccaatcttccaagcacaagcaatcatttttcaactcttcttaggttgttgatttaagacaacattgcgagtcaccactagttggtcataaatggagttgtgttactgcatgtttttgttcttcctgatcaaaatttgcaaggataatgttcttggtaataaagacatgcatgtattcttcattcacaggcgtaggttgtccactatcttggtgaggctgaagtttgctgaacacatgaaggaagcagtgacatacatagaacaaggtcatattcgagttggacccgatacagttgttgacccagcatttctcgtgacgagaaatatggaggatttcatcacttgggtagatacatctaagattaggagaaaggtcttggagtacaacgatcagctagacgattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="48008" stop="49260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48307" g_stop="48960" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="TG34-R" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="TG34-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48307" e_stop="48960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGCAGGTAAATGAGTTCTCTATATTTCCTATTGTGTAGTTCTTTACATCTACAAACAAGTTGGCGTCAGCTGTATGAATCGTCACTTACGATATTACACCATTTAAACTCATCTCATGCCATTATTATGCAAATACAAATAAAAAACTTTTAAATTTAAATTCTCTATATTTTCTACACTTAAAAATCTCTGTAAGGTAATATTATGCAGTTTTACGTGCATACAAAAGAACCTCTCACCTACCTACCAATCTTCCAAGCACAAGCAATCATTTTTCAACTCTTCTTAGGTTGTTGATTTAAGACAACATTGCGAGTCACCACTAGTTGGTCATAAATGGAGTTGTGTTACTGCATGTTTTTGTTCTTCCTGATCAAAATTTGCAAGGATAATGTTCTTGGTAATAAAGACATGCATGTATTCTTCATTCACAGGCGTAGGTTGTCCACTATCTTGGTGAGGCTGAAGTTTGCTGAACACATGAAGGAAGCAGTGACATACATAGAACAAGGTCATATTCGAGTTGGACCCGATACAGTTGTTGACCCAGCATTTCTCGTGACGAGAAATATGGAGGATTTCATCACTTGGGTAGATACATCTAAGATTAGGAGAAAGGTCTTGGAGTACAACGATCAGCTAGACGATTATG</genome_strand>
        <mrna_strand>GCTGCAGGTAAATGAGTTCTCTATATTTCCTATTGTGTAGTTCTTTACATCTACAAACAAGTTGGCGTCAGCTGTATGAATCGTCACTTACGATATTACACCATTTAAACTCATCTCATGCCATTATTATGCAAATACAAATAAAAAACTTTTAAATTTAAATTCTCTATATTTTCTACACTTAAAAATCTCTGTAAGGTAATATTATGCAGTTTTACGTGCATACAAAAGAACCTCTCACCTACCTACCAATCTTCCAAGCACAAGCAATCATTTTTCAACTCTTCTTAGGTTGTTGATTTAAGACAACATTGCGAGTCACCACTAGTTGGTCATAAATGGAGTTGTGTTACTGCATGTTTTTGTTCTTCCTGATCAAAATTTGCAAGGATAATGTTCTTGGTAATAAAGACATGCATGTATTCTTCATTCACAGGCGTAGGTTGTCCACTATCTTGGTGAGGCTGAAGTTTGCTGAACACATGAAGGAAGCAGTGACATACATAGAACAAGGTCATATTCGAGTTGGACCCGATACAGTTGTTGACCCAGCATTTCTCGTGACGAGAAATATGGAGGATTTCATCACTTGGGTAGATACATCTAAGATTAGGAGAAAGGTCTTGGAGTACAACGATCAGCTAGACGATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG34-F" ref_strand="+" ref_description="TG34-F">
      <seq>caaaattgatttggggttctgatcggacatcgccctgcaaaaaaaaaaccccaaaatccaaattcagtaacgaaagcataccgaagatgcacaaaaaaaggaaataaattcgagtgagatgaaacgaagaaccaaaagcacagcgcagacaaaagatgaaggtacataaaaagtgagagagaaaatctgtatttacagtgatgagaagcaccgtaataagcacgctaagtactaaaatgtattaatgacttattaagtacgctaaaggtaaaatcgtgtatttaaacgctcggaggaaacaaaataacctaagaatatataaaaattatacatttatggtaactatgtaagttaaaaaaatttatttccataattatttttatatacgtggtcgttttacatttcatattcatcaagaaaactagataagtttatcgttatatatttatttagtgttctttttaaagtcaaaatttttaattactgaaaataaattaaattacgttgactaattaaattgaccaatgaaccagaattaattatttagtttcttacattatacgcttataactcttaaggataaaatagaaagcgtaatattatttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="50959" stop="49753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50659" g_stop="50053" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="TG34-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="TG34-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50659" e_stop="50053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTGATTTGGGGTTCTGATCGGACATCGCCCTGCAAAAAAAAAACCCCAAAATCCAAATTCAGTAACGAAAGCATACCGAAGATGCACAAAAAAAGGAAATAAATTCGAGTGAGATGAAACGAAGAACCAAAAGCACAGCGCAGACAAAAGATGAAGGTACATAAAAAGTGAGAGAGAAAATCTGTATTTACAGTGATGAGAAGCACCGTAATAAGCACGCTAAGTACTAAAATGTATTAATGACTTATTAAGTACGCTAAAGGTAAAATCGTGTATTTAAACGCTCGGAGGAAACAAAATAACCTAAGAATATATAAAAATTATACATTTATGGTAACTATGTAAGTTAAAAAAATTTATTTCCATAATTATTTTTATATACGTGGTCGTTTTACATTTCATATTCATCAAGAAAACTAGATAAGTTTATCGTTATATATTTATTTAGTGTTCTTTTTAAAGTCAAAATTTTTAATTACTGAAAATAAATTAAATTACGTTGACTAATTAAATTGACCAATGAACCAGAATTAATTATTTAGTTTCTTACATTATACGCTTATAACTCTTAAGGATAAAATAGAAAGCGTAATATTATTTAC</genome_strand>
        <mrna_strand>CAAAATTGATTTGGGGTTCTGATCGGACATCGCCCTGCAAAAAAAAAACCCCAAAATCCAAATTCAGTAACGAAAGCATACCGAAGATGCACAAAAAAAGGAAATAAATTCGAGTGAGATGAAACGAAGAACCAAAAGCACAGCGCAGACAAAAGATGAAGGTACATAAAAAGTGAGAGAGAAAATCTGTATTTACAGTGATGAGAAGCACCGTAATAAGCACGCTAAGTACTAAAATGTATTAATGACTTATTAAGTACGCTAAAGGTAAAATCGTGTATTTAAACGCTCGGAGGAAACAAAATAACCTAAGAATATATAAAAATTATACATTTATGGTAACTATGTAAGTTAAAAAAATTTATTTCCATAATTATTTTTATATACGTGGTCGTTTTACATTTCATATTCATCAAGAAAACTAGATAAGTTTATCGTTATATATTTATTTAGTGTTCTTTTTAAAGTCAAAATTTTTAATTACTGAAAATAAATTAAATTACGTTGACTAATTAAATTGACCAATGAACCAGAATTAATTATTTAGTTTCTTACATTATACGCTTATAACTCTTAAGGATAAAATAGAAAGCGTAATATTATTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T1486" ref_strand="+" ref_description="T1486">
      <seq>tggaaccagctgagggtattcttttgattgtggagagcttaacactagaagcaaatgagagtgataacatcagcattacttctgatgtagatgtagtctccagtgatgaagcaggtgctggtgaacaggcaaagaaaattgtactacttttccttgaaagattgtcccatccatctggacttagaaagtcaaataagcagcagaggaacactgagatggtcgctagaatattgccttacttgacgtacggggaacctgcagcaatggaagctcttgtacagcattttgaaccttgtttacagaattggcgcgaatttgataggctgcaaaaacattacgaagaaaatatgaaagatgaaacaattgcgcagcaagcttcaaagcaaaaatacaccctagagaattttgttagggtttcagaatccctcaagacaagttcttgtggagagaggttgaaagatattatactggaaaaagggattactggggctgcaatcagccatctaaaagaaagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="57888" stop="56772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57588" g_stop="57072" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="T1486" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="T1486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57588" e_stop="57072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAACCAGCTGAGGGTATTCTTTTGATTGTGGAGAGCTTAACACTAGAAGCAAATGAGAGTGATAACATCAGCATTACTTCTGATGTAGATGTAGTCTCCAGTGATGAAGCAGGTGCTGGTGAACAGGCAAAGAAAATTGTACTACTTTTCCTTGAAAGATTGTCCCATCCATCTGGACTTAGAAAGTCAAATAAGCAGCAGAGGAACACTGAGATGGTCGCAAGAATATTGCCTTACTTGACGTACGGGGAACCTGCAGCAATGGAAGCTCTTGTACAGCATTTTGAACCTTGTTTACAGAATTGGCGCGAATTTGATAGGCTGCAAAAACTTTACGAAGACAATATGAATGATGAAACAATTGCGCAGCAAGCTTCAAAGCAAAAATACACCCTAGAGAATTTTGTTAGGGTTTCAGAATCCCTCAAGACAAGTTCTTGTGGAGAGAGGTTGAAAGATATTATACTGGAAAAAGGGATTACTGGGGCTGCAATCAGCCATCTAAAAGAAACCTT</genome_strand>
        <mrna_strand>TGGAACCAGCTGAGGGTATTCTTTTGATTGTGGAGAGCTTAACACTAGAAGCAAATGAGAGTGATAACATCAGCATTACTTCTGATGTAGATGTAGTCTCCAGTGATGAAGCAGGTGCTGGTGAACAGGCAAAGAAAATTGTACTACTTTTCCTTGAAAGATTGTCCCATCCATCTGGACTTAGAAAGTCAAATAAGCAGCAGAGGAACACTGAGATGGTCGCTAGAATATTGCCTTACTTGACGTACGGGGAACCTGCAGCAATGGAAGCTCTTGTACAGCATTTTGAACCTTGTTTACAGAATTGGCGCGAATTTGATAGGCTGCAAAAACATTACGAAGAAAATATGAAAGATGAAACAATTGCGCAGCAAGCTTCAAAGCAAAAATACACCCTAGAGAATTTTGTTAGGGTTTCAGAATCCCTCAAGACAAGTTCTTGTGGAGAGAGGTTGAAAGATATTATACTGGAAAAAGGGATTACTGGGGCTGCAATCAGCCATCTAAAAGAAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T1076" ref_strand="+" ref_description="T1076">
      <seq>gggcagtcctgtcctccctccatcctatttctttggagctcaaactgcaaccttagattcttcaaattttccggataaaattacttccattggttctcgatttcatctgagaaataaaatggatattgatgaaatacttggggtatctcggcctgtgagtttgacaaacaagagtgctatttatgtttggggttacaatcaatctgggccaacgggtcggagagggaaagagaggagtttgaggatcccaaaacacctttctccacagctatttggatgcccagctggtgggaattcccgttggttggatattgcttgtggtcgtgagcatactgctgctgtggcttctgatggatcgctttttacatggggagctaaccaatttggtcaactgggtgacggaactgaaaatgctatgaagcacccctagaaagtgaaacaattgccatctgaatttgggattagtggttcatgtggagcacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="103284" stop="105209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103583" g_stop="103689" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103690" i_stop="103807" i_length="118">
            <donor d_prob="0.924" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="103808" g_stop="104071" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="371" r_length="264" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104072" i_stop="104795" i_length="724">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.792" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104796" g_stop="104909" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="485" r_length="114" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="T1076" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="T1076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103583" e_stop="103689"/>
          <exon e_start="103808" e_stop="104071"/>
          <exon e_start="104796" e_stop="104909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCAGTCCTGTCCTCCCTCCATCCAATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCCATTGTTTCTCGATTTCATCGTAAGTTTTTCACTGCTTACATTTATTTTTTAGAGTCAAAGTTAGGGACTTGGGTTCAAAAACAGTAGTTAAAGATCATAGTTTTTTTTTGTAATTTATGGTTCATTTTTGTTGATAGTGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGGGTTTGCCCTTTATTTACCTTCACTTTTCAGTATCCATGTTTTACCTCTATTTCTGATTTCAATTGACTCTCGTTTACTTCATGCTTGCCCAAAGATTTGATCTTTTTTCATCAGCTGTCTCTGTATTTCTGATATAAATTGGGTGGAATGAAGAAAGAAAACCATGTTCTTTAGTTTGATCATGCTATCTGATGAAATTGGGTTGAGAAAGAGTTTCTGAAGATTGGGTGTAACCCAAGAATGTGCCAGTTATAGTATTTATCTTCCAAATGAATGATGAATTCTCATGTAAACTGTGGCATCTTTTAATTTTTCCCTAACATGGTTTGATCTCGGTTGGGGTTATCTATTTGCCTCTAAAACCCATTGCCTTATTCTTACTGATAAAAAGGTCATTGCTCTATTTTGTTGGTTATTTATTGCCTTTCTTAATTGATCTTGTTACATTTTGTGTATTTTTGCTCAAATAAATTCCTTGGTGTAATACTTGTTTTTTATTCCTTTACTCAAAGAGATATGTTGCAAAGAAGACATCGCCACTTTATGCATTTTAAGTTGATATAGAACAATTAATTTTACTTGTAAAGTTTACCTCTTTGGGAAAAATCTAGATTTTAATTGATATTTGACAATTAATTTCAGAAGTCTGTTCCTGCTTTTGTTTGTGGGGAAGTTGATTTTCCTTGTAAGAGAGAGCACTCCTAATCTTTATACCTTCAAACAGGAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATT</genome_strand>
        <mrna_strand>GGGCAGTCCTGTCCTCCCTCCATCCTATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCCATTGGTTCTCGATTTCATC......................................................................................................................TGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCCAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACACCTTTCTCCACAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTAACCAATTTGGTCAACTGGGTGACGGAACTGAAAATGCTATGAAGCACCCCTAGAAAGTGAAACAATTGCCATCTGAATTTGGGATTAGTGGTTCATGTGGAGCACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At3g02300" ref_strand="+" ref_description="C2_At3g02300">
      <seq>gtcctgtcctccctccatccataaaactcccaatttctttggagctcaaactgcaaccttagattcttcaaattttccggataaaattccttccattatatatctttttctcgatttcatcgtaagtttttcactgcctacatttattttttagagtcaaagttagggacttgggttcaaaaacagtagttaaagatcataggttttttttttttgtaatttatggttcatttttgttgatagtgaaaaataaaatggatattgatgaaatacttggggtatctcggcctgtgagtttgacaaacaagagtgctatttatgtttggggttacaatcaatctgggcaaacgggtcggagagggaaagagaggagtttgaggatcccaaaacagcttcctccagagctatttggatgcccagctggtgggaattcccgttggttggatattgcttgtggtcgtgagcatactgctgctgtggcttctgatggatcgctttttacatggggagctaacgaatttggtcagctgggtgacggaactgaaaatgctaggaagcaccccaagaaagtgaaacaattgcaatctgaatttgttattagtgtttcatgtggagcacattgtactgttgccattgcagaaccacgtgaaaacgatggtagcatgtcagctcggagactttgggtttggggacagaaccagggatccaattacccacgactcttttggggtgccttttctccttctacggttattcgccaagtttcttgtggtgctgttcatgttgtagctctatcagaagaagggttactacaagcttggggctataatgaatatggtcagcttggcagaggtgttacatcagaaggccttcaaggcccttgtgtaattaatggatatgctagatttcttgatgaagcccctgaacttgtgaagattacccaagtgtcatgcggggagtaccatactgcagctatatcagagaaaggcgaggtctatacgtggggattggggagcgtgggacaacttggccattgttcacttcagtcaggtgacaaggaacttttacctaggcgtgtagtttcccttgatggcatatgtattaaagaagttgcctgtggtggtgttcacacctgtgctgtgactgcgaaaggggctctttatgcttggggtggaggtcaggctgggcaattgggagttgggccattaaatggattcttttcatgcaagctcaatgaatctgagatgatgctccgaaatataccagtgttggttgttccagatggtgtgcaactcgttgcatgtggtcattcacacacacttacttctgctaaagacggacgaatacatggatggggttataactgctatggtcaagcggctaatgagaagtctacatatgcctggtgtccatcaccagttgattggtgtgttggggcagtccgaaaattggctgctggtggtggacattcagcagtgctgactgatgcatgctctctaaaagagctgtgtgaatttaggcttgcagaaacagtgaatccatccaatgcttcagtggttgaggatgtcgcctcaagaacaggagctgatgctttagcacgactttgtgaaagattgagggagcattactacaatgatgatgagtttggtctgtgaaatcattgatgggtgttaaatatgtaacataccaataattcagccattagatttgattcttcaatccatctaatacaatagagaaaacagagtctttgtttcatcattgaataaatgtattctactttttatgctgctgcatcattaagttaatacaacaaaacatctacttacaatttaaaaaaaaaaaaaaaaaaatcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="103288" stop="108726"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103606" g_stop="104071" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="507" r_length="478" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104072" i_stop="104795" i_length="724">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.792" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104796" g_stop="104989" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="701" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104990" i_stop="105074" i_length="85">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="105075" g_stop="105122" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="702" r_stop="749" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105123" i_stop="105399" i_length="277">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="105400" g_stop="105472" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="750" r_stop="822" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="105473" i_stop="105688" i_length="216">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="105689" g_stop="105860" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="823" r_stop="994" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="105861" i_stop="107376" i_length="1516">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="107377" g_stop="107808" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="995" r_stop="1426" r_length="432" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="107809" i_stop="107894" i_length="86">
            <donor d_prob="0.253" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="107895" g_stop="108086" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1427" r_stop="1618" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="108087" i_stop="108201" i_length="115">
            <donor d_prob="0.256" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="108202" g_stop="108419" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1619" r_stop="1836" r_length="218" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1837" polyA_stop="1854"/>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="C2_At3g02300" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>1795</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="C2_At3g02300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103606" e_stop="104071"/>
          <exon e_start="104796" e_stop="104989"/>
          <exon e_start="105075" e_stop="105122"/>
          <exon e_start="105400" e_stop="105472"/>
          <exon e_start="105689" e_stop="105860"/>
          <exon e_start="107377" e_stop="107808"/>
          <exon e_start="107895" e_stop="108086"/>
          <exon e_start="108202" e_stop="108419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCC-----AT-TGT--TTCTCGATTTCATCGTAAGTTTTTCACTGCTTACATTTATTTTTTAGAGTCAAAGTTAGGGACTTGGGTTCAAAAACAGTAGTTAAAGATCATA-G---TTTTTTTTTGTAATTTATGGTTCATTTTTGTTGATAGTGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGGGTTTGCCCTTTATTTACCTTCACTTTTCAGTATCCATGTTTTACCTCTATTTCTGATTTCAATTGACTCTCGTTTACTTCATGCTTGCCCAAAGATTTGATCTTTTTTCATCAGCTGTCTCTGTATTTCTGATATAAATTGGGTGGAATGAAGAAAGAAAACCATGTTCTTTAGTTTGATCATGCTATCTGATGAAATTGGGTTGAGAAAGAGTTTCTGAAGATTGGGTGTAACCCAAGAATGTGCCAGTTATAGTATTTATCTTCCAAATGAATGATGAATTCTCATGTAAACTGTGGCATCTTTTAATTTTTCCCTAACATGGTTTGATCTCGGTTGGGGTTATCTATTTGCCTCTAAAACCCATTGCCTTATTCTTACTGATAAAAAGGTCATTGCTCTATTTTGTTGGTTATTTATTGCCTTTCTTAATTGATCTTGTTACATTTTGTGTATTTTTGCTCAAATAAATTCCTTGGTGTAATACTTGTTTTTTATTCCTTTACTCAAAGAGATATGTTGCAAAGAAGACATCGCCACTTTATGCATTTTAAGTTGATATAGAACAATTAATTTTACTTGTAAAGTTTACCTCTTTGGGAAAAATCTAGATTTTAATTGATATTTGACAATTAATTTCAGAAGTCTGTTCCTGCTTTTGTTTGTGGGGAAGTTGATTTTCCTTGTAAGAGAGAGCACTCCTAATCTTTATACCTTCAAACAGGAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGACAGAACCAGGTCAGTCTCACAAAAAAAAAAACCTTCAAGCAGCTACCTTGTTTATTTGAGATCACAATTTGTTTGCCTGTGTTATTCTATGCAGGGATCCAATTACCCACGACTCTTTTGGGGTGCCTTTTCTCCTTCTACGGTACTATTTTTTCTTGAGAATGAACTTTTGTGGAGATATCTGTGTTTTTCATGCAAATACATTACTTCTGTTCTGTGTGGTCCTAGTGGGGCTTAAGCATTTATCTAGTCGCATTTATGTTATGATAGCAGATTTACCTTTACCTGAGTTCTCTATCTAATCTATGCCCCCAATTTTTTTGTTAAGAAGTTGCTTTCCATACAAAAACAACGGTGACTTAACATTCGCAGTGCGCAACAAATTTTATGATATATGTATGCTCTTTCAATTCATTCAGGTTATTCGCCAAGTTTCTTGTGGTGCTGTTCATGTTGTAGCTCTATCAGAAGAAGGGTTACTACAAGCTTGGGGTAATTTGCACTTTCTTAATTCACCTTTATATACAATTCTATGCTTAACATATCCTCTCAGTAATTTTGATGAAATCAGTGCACATATGTGTATGGATCTCTGTATGTGATTTTAATTTTTATGTGTACATCCTCTATCAGGTTACACAGCCTTAGAGTTAAAAACATATTGTGTCATGTATTAATGAAAATTTTGTCACTGCGCTGGTTAAGCAGGCTATAATGAATATGGTCAGCTTGGCAGAGGTGTTACATCAGAAGGCCTTCAAGGCCCTTGTGTAATTAATGGATATGCTAGATTTCTTGATGAAGCCCCTGAACTTGTGAAGATTACCCAAGTGTCATGCGGGGAGTACCATACTGCAGCTATATCAGAGAAAGGCGAGGTGTAAGTGTTCATTGGACCTTTCTTGATGGAGATAAGTTTTGATGCTAAACATGAGAATATGGTTATCCGCATGGCACAAGTGGACGTGGATTTCAGGGAAAATAAACCATAAAGATACACTACTTAATTTGCAGGATTTGTTTTTTCCATTTGTGGAACTTCTCTAATTTAATTGAAGTTGCCTGGTCCAACTGAAATATTACGTTTGTAAATTTCCTCATGGCTTCTGGATTTGATTATAGGATTTTGTTGGATAGTCATTACTAAGAAGATACCTAGAAACTACCCCATTTAGACATACACACTAGAAAAGGAAGATAGAGTTGTTCAGTTCTCTAGGAAGTTAAATGAATCTTCTGCTATTACTTTTAGTTTCTTTAGTAGAGACTTAGCATGATTGCTGCATTTTTCAGTATTCCTGTCTTAACTTTGTATGAGGGAAACAGTGGTGCATCCTTACTCATTTCTCCTTATGAGGTGGTATCAGTTTTGCTATGCATTAACTAAAATTTTGTTGTCTGAGTTTGTGTTAATTTGTATTCACTTTACTTAATTCTTCTGTTCACATGTTAGCTCTTTTAAATTTTTTGGTTATTTCGATCTTTTTTTTTAATTTGATGACCGTGGTGTCTGGACCAACTTTTGTGCACTTAGACGCATTCCACAGGATACCTGCCACGTCCTACTAGCAACAGAAGGTTAGAACAGATGGGAAGAATCATGATAAGTAGGGATTTTTTTTCATGAAGTTCTTTGAGATAATAAATTTCCTTCCAGAAAAGACCCCTAATAATATTGTACTAACATTTGCTTATGTTATAGCAAAGCTAAGTTCTCTTGTTTGCTAGTTCTTTCTTATGCTGGTACGAATTTCTTACCATAAATTGAACTTTTCTTGTGCTGTGATAAACACATCCATGCTCTCCCGAAAACTCTTAAATCAGAAGCGAATTGTGGCCCTCTCTCTACAATAAAAATAACTTTTAGCGGCAATAAATAGATACATTAATAAAGAGTGCTAAAGTCTTTACCGGCATTAGTTAAGTGTCATTAGATCCAATGTCGCTAAAGCCTTTAGTGACACATACAAAGAGTGCTTATTTAGCGGCAATTGCTAATTAATTGCCGCTAAAGCTCATTTTTAATGTAGTGTCTCCCACTTTGATCCCGTAGTCATTGACCCTTCATCAAATGAATAAGAAGCTTCACAACATGGATCTTCATGATGATCTACCATCTTGCAGTACCCCTCATTATACTTTAAGACTTAACAACCGACAGGGCTTGTGGACTTAAGCTGATATTATTGTTCTGAACTTCTTTTTGTTTAATTTCTTATTCACATATTTCATTGGATCTCTCGAAGTTCTGTACAAATTAGTGATGGTTATTTTTTGCTTTTCAACAGATACTACTCTACGGATCATTTGATTGATACCCTTCTTCTTTCCCCTGTCCATTTCTTAAGATTTTGATACAGGCTGACTTATCGTTCTATCATTGTGACTAACTACAGCTATACGTGGGGATTGGGGAGCGTGGGACAACTTGGCCATTGTTCACTTCAGTCAGGTGACAAGGAACTTTTACCTAGGCGTGTAGTTTCCCTTGATGGCATATGTATTAAAGAAGTTGCCTGTGGTGGTGTTCACACCTGTGCTGTGACTGCGAAAGGGGCTCTTTATGCTTGGGGTGGAGGTCAGGCTGGGCAATTGGGAGTTGGGCCATTAAATGGATTCTTTTCATGCAAGCTCAATGAATCTGAGATGATGCTCCGAAATATACCAGTGTTGGTTGTTCCAGATGGTGTGCAACTCGTTGCATGTGGTCATTCACACACACTTACTTCTGCTAAAGACGGACGAATACATGGATGGGGTTATAACTGCTATGGTCAAGCGGCTAATGAGAAGTCTACATATGCCTGGTGTCCATCACCAGTTGATTGGTACGATTCGTGAGAACCAATGCTTGACTAGACGTTGGAAATCTTTTGATACAAAGTCATTTCTTATTCAAGTACCCTTTGTTCAGGTGTGTTGGGGCAGTCCGAAAATTGGCTGCTGGTGGTGGACATTCAGCAGTGCTGACTGATGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAGGTAGAAATTCTACTGTTGAATGCCATGCTTCAGATGTTCAAAACCTGTCTTGCTCTAAAATGTCATTGCTCTAAAAGCGCTAGTAACTAAATTTATTTTTGTTGGGCATTTGCAGGGAGCATTACTACAATGATGATGAGTTTGGTCTGTGAAATCATTGATGGGTGTTAAATATGTAACATACCAATAATTCAGCCATTAGATTTGATTCTTCAATCCATCTAATACAATAGAGAAAACAGAGTCTTTGTTTCATCATTGAATAAATGTATTCTACTTTTTATGCTGCTGCATCATTAAGTTAATACAACAAAACATCTACTTACAATTTAA</genome_strand>
        <mrna_strand>CCAATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTCCTTCCATTATATATCTTTTTCTCGATTTCATCGTAAGTTTTTCACTGCCTACATTTATTTTTTAGAGTCAAAGTTAGGGACTTGGGTTCAAAAACAGTAGTTAAAGATCATAGGTTTTTTTTTTTTGTAATTTATGGTTCATTTTTGTTGATAGTGAAAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGACAGAACCAG.....................................................................................GGATCCAATTACCCACGACTCTTTTGGGGTGCCTTTTCTCCTTCTACG.....................................................................................................................................................................................................................................................................................GTTATTCGCCAAGTTTCTTGTGGTGCTGTTCATGTTGTAGCTCTATCAGAAGAAGGGTTACTACAAGCTTGGG........................................................................................................................................................................................................................GCTATAATGAATATGGTCAGCTTGGCAGAGGTGTTACATCAGAAGGCCTTCAAGGCCCTTGTGTAATTAATGGATATGCTAGATTTCTTGATGAAGCCCCTGAACTTGTGAAGATTACCCAAGTGTCATGCGGGGAGTACCATACTGCAGCTATATCAGAGAAAGGCGAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATACGTGGGGATTGGGGAGCGTGGGACAACTTGGCCATTGTTCACTTCAGTCAGGTGACAAGGAACTTTTACCTAGGCGTGTAGTTTCCCTTGATGGCATATGTATTAAAGAAGTTGCCTGTGGTGGTGTTCACACCTGTGCTGTGACTGCGAAAGGGGCTCTTTATGCTTGGGGTGGAGGTCAGGCTGGGCAATTGGGAGTTGGGCCATTAAATGGATTCTTTTCATGCAAGCTCAATGAATCTGAGATGATGCTCCGAAATATACCAGTGTTGGTTGTTCCAGATGGTGTGCAACTCGTTGCATGTGGTCATTCACACACACTTACTTCTGCTAAAGACGGACGAATACATGGATGGGGTTATAACTGCTATGGTCAAGCGGCTAATGAGAAGTCTACATATGCCTGGTGTCCATCACCAGTTGATTG......................................................................................GTGTGTTGGGGCAGTCCGAAAATTGGCTGCTGGTGGTGGACATTCAGCAGTGCTGACTGATGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAG...................................................................................................................GGAGCATTACTACAATGATGATGAGTTTGGTCTGTGAAATCATTGATGGGTGTTAAATATGTAACATACCAATAATTCAGCCATTAGATTTGATTCTTCAATCCATCTAATACAATAGAGAAAACAGAGTCTTTGTTTCATCATTGAATAAATGTATTCTACTTTTTATGCTGCTGCATCATTAAGTTAATACAACAAAACATCTACTTACAATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T0347" ref_strand="+" ref_description="T0347">
      <seq>caggcaactcgttgcatgtggtcattcacacacacttacttctgctaaagacggacgaatacatggatggggttataactgctatggtcaagcggctaatgagaagtctacatatgcctggtgtccatcaccagttgattggtgtgttggggcagtccgaaaattggctgctggcggtggacattcagcagtgctgactgatgcatgctctctaaaagagctgtgtgaatttaggcttgcagaaacagtgaatccatccaatgcttcagtggttgaggatgtcgcctcaagaacaggagctgatgctttagcacgactttgtgaaagattgacggagcattactacaatgatgatgagtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="107371" stop="108530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107668" g_stop="107808" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107809" i_stop="107894" i_length="86">
            <donor d_prob="0.253" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107895" g_stop="108086" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="333" r_length="192" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108087" i_stop="108201" i_length="115">
            <donor d_prob="0.256" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108202" g_stop="108230" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="362" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="T0347" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="T0347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107668" e_stop="107808"/>
          <exon e_start="107895" e_stop="108086"/>
          <exon e_start="108202" e_stop="108230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGCAACTCGTTGCATGTGGTCATTCACACACACTTACTTCTGCTAAAGACGGACGAATACATGGATGGGGTTATAACTGCTATGGTCAAGCGGCTAATGAGAAGTCTACATATGCCTGGTGTCCATCACCAGTTGATTGGTACGATTCGTGAGAACCAATGCTTGACTAGACGTTGGAAATCTTTTGATACAAAGTCATTTCTTATTCAAGTACCCTTTGTTCAGGTGTGTTGGGGCAGTCCGAAAATTGGCTGCTGGTGGTGGACATTCAGCAGTGCTGACTGATGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAGGTAGAAATTCTACTGTTGAATGCCATGCTTCAGATGTTCAAAACCTGTCTTGCTCTAAAATGTCATTGCTCTAAAAGCGCTAGTAACTAAATTTATTTTTGTTGGGCATTTGCAGGGAGCATTACTACAATGATGATGAGTTTG</genome_strand>
        <mrna_strand>CAGGCAACTCGTTGCATGTGGTCATTCACACACACTTACTTCTGCTAAAGACGGACGAATACATGGATGGGGTTATAACTGCTATGGTCAAGCGGCTAATGAGAAGTCTACATATGCCTGGTGTCCATCACCAGTTGATTG......................................................................................GTGTGTTGGGGCAGTCCGAAAATTGGCTGCTGGCGGTGGACATTCAGCAGTGCTGACTGATGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAC...................................................................................................................GGAGCATTACTACAATGATGATGAGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="P61" ref_strand="+" ref_description="P61">
      <seq>gtctctatctatgctaggtagcttatatgatttaatagttcgattaatttaaatacgcattaaagatagaggatgggaagaggtagggtagagttgaaacggatcgagaacaaaataagcagacaagtaacattctcaaagagacgatctggattattgaagaaagctaatgagatctcagtattatgtgatgctgatgttgcattgattgtgttttctaccaaaggcaaacttttcgagtattcctcaaatgactcaagtatggaaagtattcttgaaagatatgaaagatgctcatatgcagagagacagatgaatgctaatgattctgatcccaaggaaaattggagtgtggagtatccgaagctcatgtcaagaattgaacttttacaaagaaatataaggcattacatgggtcaggatctggaccctctcagtttgcgtgagctccagagtatagagcaacagattgatacttcattaaagagaattagaagcaggaagaatcaactgatgcacgagtccatttctgagctgcagaaaaaggagaaagcgctccaagaacaaaacaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="113602" stop="108761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113303" g_stop="113044" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113043" i_stop="110484" i_length="2560">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110483" g_stop="110405" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="339" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110404" i_stop="109666" i_length="739">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109665" g_stop="109601" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="404" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109600" i_stop="109438" i_length="163">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109437" g_stop="109338" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="504" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109337" i_stop="109259" i_length="79">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109258" g_stop="109217" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="546" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="109216" i_stop="109089" i_length="128">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="109088" g_stop="109061" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="574" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="P61" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="P61" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113303" e_stop="113044"/>
          <exon e_start="110483" e_stop="110405"/>
          <exon e_start="109665" e_stop="109601"/>
          <exon e_start="109437" e_stop="109338"/>
          <exon e_start="109258" e_stop="109217"/>
          <exon e_start="109088" e_stop="109061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTATCTATGCTAGGTAGCTTATATGATTTAATAGTTCGATTAATTTAAATACGCATTAAAGATAGAGGATGGGAAGAGGTAGGGTAGAGTTGAAACGGATCGAGAACAAAATAAGCAGACAAGTAACATTCTCAAAGAGACGATCTGGATTATTGAAGAAAGCTAATGAGATCTCAGTATTATGTGATGCTGATGTTGCATTGATTGTGTTTTCTACCAAAGGCAAACTTTTCGAGTATTCCTCAAATGACTCAAGGTACTACTCTACCAATTTTATTCGAAATCTATGACTAAACGCTGCTATAGTTTTTTTCTATTGAAGCAACAAAATGATGTTTTACCTTTAAAAATTCCTAATTAGTGTATATATATATATATATATATATGTCATGTTAGTGTTTTGGTTTTTTATTTTTGACATAATTAGGTCACAAAAGTAATGAAGGAAAATTAAATCATATATGCTATGTATATTTAGTAAGCTAATTATTGATCAGCTCATTGATGTCCTCATGCACTAATTTGAGTAATTTCTATAATTGTTTGTATGGTAACTTATTACTTTATCTTTTCTCATTACATACGATTTAGATCGTTTGTTCTTAGCTTGGTGAATTTATTACATTGAAACTAGATCTCCTATTTCTTTCCAAAGAGTAAATCAAGTGATTATTGATCAGTAATCATGAACACATATTTCATACTTCTTAGCTCCCGTTTTGCCTTAGATTTTGAAACTTGAAAATTTGAGTTTTTTTTTTTTGAAAGTGTGCATTTCGGAACAAAAATTGTGTTAGAATTTTTACTTGGAAAATTTTTGAAGTTTTGTGAGCGAAAGTAAAAGTCATTCAACCTACTAAATAGTTTTGGAAATTTATCTAAAATTTATGACCAAAAGCTAACTTCATCATTGAAGCATTGAAATTTATTTATATTTGCTACACGAAATAAAAATGATATTTTACCCTTCAAATATCCCTAAAACTACCCTCATAAGTATATTACTTCCCTTGTGTTTTCCATGTATATTTTGCAGGTAGTCATGTTAGTGTATATTGACATAATTACATTACAATTAGATGAAATGCACAAAATACAACAAATTAAAAGCAAAAGCTGAAGAAAGAGCATTTCATTTTAAAGCCTAGAGCCTTGTGCCTCTTTGTCAGTTCATTCACTGATATATAGTACGAGGAGCACTCTTAATGACGTACATGTACTCCAATTATATTACTAACATTAATGATAACGCAGAGATTCTTTATACTGTCAACGTATAAATTATCTTCTGGTCAATTGATCTCTATTAATGACAAGTTAAATCTTATTAGTCGTTTGGTTTTCCGAACGAATTAATATTGATCCAAATCCTTCAGTTAGTTGTTTATAGTCTATGATTTCATGTTATATTAAAATTGATAAATAATCTTCTTGAAGTTTGTAATAGCAATGAATACATAACGAGTTATGTAAATCATGAGTTTAAAAGACCTACTAACTAGATTTGTTGAGGCCTCTAATATAGTTTTAACTTATTAAAGGCATATCTTATACAACATTGATAAATCTAAATGATTATGATGAATCTTGTAGAACAGACACAATTTTGTGGCAAAATATTGTCAAACAATCTCATCCAGCTACAAAAAAGAAAAGGCACAATCTAGGTATAGCTTTACCTGTTATAGTAAATTGTAAGCAACTTTTTATTTGATCATGAATGGAAGCTTTAATTAACAACCAAAACATAGCTAATGTAATTCTACAGGTGGAGTCTAAAGAGAATAGAGCTAATGTCATTACCTCAAAAATGATCACTAGTGACAATTAATTCTTAATTACTGTTAAGAATGTGTATTTTTAGCGGCAACTACCATTCTTTGTATATGTCCCTAAAACCTTCAGTTGCATCGGTTCGAATGAGACTTAACTAATGAAGGTAAAGACTTTACCACTCTTTATTAATGTCAATATTTATTGCCGCTAAAAATTATTTTTGTTGTAGTGTGTATGCTGACCCTACCCCTGATTATTGTACAGAGATAGAGTATTTATTGTCTCCGAAAGACCCTCAACTCAAATAACTTGCACCAAAGTAGTGTGAAAAGGAAAATATAGAACTAAAGAAAACATAGCAAATAATAGGGAAAGGACATGAAAATAATGTGATAAACTAAAAACAAGAAACAACCAGTAGTAACAGAAATTGGAGAACAAAAATCTACGAAAATATTGTTAATACTATAGGTATGAAAGGAGATAAATGCACACTGCACCAAACTACCACCAAACCTATACCATAGGAAAGCAAGATGATGTTTAACTACGTACTTACCTTCAACCCTTTACCACGATCTCGATATCCTCCTATCTAAGATCATATTCCGTAAATTCATGCATGTGTGTCTAATTAATCACCCTTATCCAATATTTTTTTAGTCTACCTCTACCCCTCTTTAAACCCACCATTGTCGATTTCTCACACGTTCTCACTTGGGCATTTGCACATCTCTACGTCACAGACTCAATCATCTCAGCTTCGCTTCTCTCATCTTAGCCACCATGGATGCCACTCTAATAAATAGATCTATCTCTTTCATTTTGAATTGATATACCTGACCTGATTAAAATGCAAAAAACTTCTCATTCTAAAATAACCTAGTTAGAATCCTATTTAAGTAATATTGTATATCAATGGAAAAATTACCAACTGTAAATGAAAAAATAAAATAAAATTTTATACTATTAGGTCATGTAGTTAAGTTCAATATGCTTACTGGCTTATAATTTTTTTTTTGTTTATTTTTTGATTTTAGTATGGAAAGTATTCTTGAAAGATATGAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAGGTAAATGCAAATTAATAAATTTCAAATGTTTCTTTCTCTTGATTTATCCTTTAAATTTTATCATTGTTGGTTAAAAAAAAAACGAGGTCTTATAATGAAATATTGAAAGACTCTCTCCATTTTAATTTATATAATTCTTTTCCAATTTAAGTCAATCTAAAAATGATTATGGCCTTTTTTTCCACATTTGGAAAGAACCAAATTAATTAAAGCTTGCTACTTTATTTTTATTAGCAAGTCTCTATAGTAGATAGAAAAAAATGCTGTGAAAAATCTAAAATCATATGTAGAAGTCTTATTTTTTTCATAAATTTTGTGTATAATCAAATTGGTTCTTTACATAAAATGAATGGAAGATACTATTAAAGTGAAATACTTGCAGCATTTTTAAGTTAGAATTTTTTATTTTCACTCAGTGGCATAGCCACATAGAGATTAGGGTGTTCAATTGTCGGAAAAAAAGAACATGTATACTAACTAGTAAATGATTAAATAATATATTTTGGATATTCTTAACATAACAAGCTGCTATTTCTGAACAACTTTTAAGAAATTTCTGGATGCCACTGTTCTCACCAACTTTAGTCCAAGCAAAGTTCATGTTTTGAACATATAAAGCATACTTCAAATACATTTCCCCCCTCAATAAATTTCAAATTTAATATTTTCCCAGGCACTTGCTAATTAGTTTTCTAGTCTTTTGTTTTCCTTTTGATCTCATTAGATGTATTTGTTGTAGGAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAATTGAACTTTTACAAAGAAATATAAGGTATGCATACCCCTTCACTTCATTAGTAGTAATACACATGAAAAATGGGCGAATTCTTTCTACATTTGCAAAAGACGATGTAAGCCCATTTTTAATTGACACGTGAAAACAGTGTCTGTTTTAACGCCGAATTCAAATTGTTCATATAATATTAATTGTGTAGGCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATACTTCATTAAAGAGAATTAGAAGCAGGAAGGTCCGTATTAATTAATTACTAATTGATATCAACTGTAGTTAATCTTTAAGGTTAATAGTATAAATTGAATAATATGCAGAATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAGGTAATAACGATATACTATTAATATTCTTCTCCATCGTCAATAATTATTCGGATTTACTTGAATCTATACAGTGTTTCTGTATTTATGATATTTGTGTTATAAGTAATACTTGCACTATATATGAGCAGGAGAAAGCGCTCCAAGAACAAAACAACT</genome_strand>
        <mrna_strand>GTCTCTATCTATGCTAGGTAGCTTATATGATTTAATAGTTCGATTAATTTAAATACGCATTAAAGATAGAGGATGGGAAGAGGTAGGGTAGAGTTGAAACGGATCGAGAACAAAATAAGCAGACAAGTAACATTCTCAAAGAGACGATCTGGATTATTGAAGAAAGCTAATGAGATCTCAGTATTATGTGATGCTGATGTTGCATTGATTGTGTTTTCTACCAAAGGCAAACTTTTCGAGTATTCCTCAAATGACTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGAAAGTATTCTTGAAAGATATGAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAATTGAACTTTTACAAAGAAATATAAG...................................................................................................................................................................GCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATACTTCATTAAAGAGAATTAGAAGCAGGAAG...............................................................................AATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAG................................................................................................................................GAGAAAGCGCTCCAAGAACAAAACAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="P58" ref_strand="+" ref_description="P58">
      <seq>ggaagtcaatcgatcaatcaaagataatgagcaaagcagctatagggaatacttgaaactcaaagccaaatatgagtcgctgcagcgatatcaaagacaccttcttggagatgagttggggcctctgactatagatgatcttgagcatcttgaagtccaactagatacttccctcaaacacattaggtccaccaggacacaaatgatgcttgatcagctttctgatcttcaaactaaggagaaattgtggaatgaggctaacaaggttcttgaaagaaagatggaagaaatatatgctgaaaacaacatgcaacaagcatggggtggtggtgagcaaagtctcaattatggtcagcagcaacatcctcaatctcagggtttcttccaacctctagagtgcaactcttccttgcaaattgggtacgatccaataacaacttcaagccaaataacagcagtaacaaatgcccaaaacgtgaatggtatgatacctggttggatgctgtgaatgaaaaagtcctttatcttcagctttgcataaaagcatatgaagtatatttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="125455" stop="122517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125155" g_stop="125125" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238">
            <donor d_prob="0.840" d_score="0.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="124886" g_stop="124822" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="96" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="123957" g_stop="123858" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="196" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.604" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="123779" g_stop="123738" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="238" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="123737" i_stop="123660" i_length="78">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123659" g_stop="123618" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="280" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123617" i_stop="123318" i_length="300">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="123317" g_stop="123178" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="420" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="123177" i_stop="122960" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="122959" g_stop="122817" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="563" r_length="143" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="P58" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="P58" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125155" e_stop="125125"/>
          <exon e_start="124886" e_stop="124822"/>
          <exon e_start="123957" e_stop="123858"/>
          <exon e_start="123779" e_stop="123738"/>
          <exon e_start="123659" e_stop="123618"/>
          <exon e_start="123317" e_stop="123178"/>
          <exon e_start="122959" e_stop="122817"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGTCAATCGATCAATCAAAGATAATGAGGTAACAAATGCTACTAATTTCGTTGACGTCACCTTTTCAAAGGATGAACGTATGTATGATTTTTACCATAATATAACTTACTATATGTAAGTTAGTTGCTTTAATTTCTGACATGATCGAATGCTGCTCGATCACAATTTTTTCTGATCGAATTTTTTTCGCAAATAAAGGAAGAATTTTTTTTTTTATATATATAGACCCTTTTCAAGTTATTGATCCATCTTGTGAGCCATTGCAGCAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAGGTAATTAACTACTAGCTAGAAAGATAATCTATAGGTGTCAAATGAAACCTAAATATTAGTGACCCGTTCAATTCGTCCAAAATTTTATTCTCAAACATGGTTCAAGAATGGGCTAAATCATAACACGTTTAGTCAGAATCCATTTGCCAACTTACCGCAGTTTTTATGCCCAAATTAACCCAACTTTCGACTTGATAATGAAATAGGCGTCGGTGCAGTTATGTGATCATCGCGAAATGTCATCAGTTTCTATGATACTTTAGTTTCTCTATTCTCTCTATTTTAATTTTTTTTAATGTTTAGTGTCGTCTAAAAGCACTAAATAAAATTAGATATATTCATTTTTTAGTTTAATTTGACTATAAAAAATATTTATCTAAACAACAGTCTAGTAACATTTTATTAAATCCAAAACTTTCGATATATTTATATAATCTTTTATGTACTATGTGGAGGTTTAGAGTATCACCAATTAACGGTGTTTATGATGCTATTAATTTCAAAATAAATAAATATAACAAACTAAATAAGCTTATATAAGTGACATCTTTGGACGCTCTAGTCACAAATATTGTATTTTCTGGCTTTTCTTTTTGTTGAGAAATTGGTTTGCCTTTATTAGTTTGGTTTATAAATTACTCTGGTATGTAAGTATTATTCAAATTAAGTGAGTCGGGTCATGATCTAATCCATTATTTTTGCTCAGCACATATGCTTTTAGTTGGATCAATTATTTATTCAGCCCATTTAAATCCGATTATCCATTTGATACCCCTATGTTAACCATAATCATGCTGTCTAAATTATTTGACATAGAAGGATGTACACAAATTGTATTCTTGATAACTTATTATACTTTAACAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGGTAAGCTTAACTTATAACAAATTTTTAGACCAATTTCAATTCAAGTATTCTGATTGTTATCTTCTGGCTGCTCTATAGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGTATTCTCATTTGATTCTAAAATGGTCAACATGATGCATGTGTTCAATAGTTAGTAACTTACTATTTTATCATAACAGGAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGGTAGGTTGCCCATACATGTGATTCTAACTCATTTTCTAGCTCCATGTATATTACTAGTTGTATTGTGATTGATTTTTGTTAGATTAGGTTTATTTTTCGTCAATTTTTTTTTTTTTACCTAACTAAGTTGCTAAAGTAAAGTATTTCTGTTGAAGAGTCTCACATCGGCTCTTTTTAAGGAATGGGTATATGGGAAATTGTGAGCTAGTTTTTAGGGTTCAGTAATTATTAAGCCGAAGATCAATATTCCTTATTGATTGATGTACCAAAGTCATTGAATTGCATATAATTTGTTAGCAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGTAAATTCTACCATATTCATTCTATATATATCTTAATTTTTAATTTATCCTATCTATTTTACATCTGCCCATTAGTTCACAAGTGAGATTTTTTGAAAAAAAAAAGGAAGAAGCAAAACAAATATAGCTTTTCATACTCTAGAGATATCGATGAAAGTTATTCACACAATTAAAGTGCTTGGCTAAAACAAAAATGTTATTGTTTTGATTTAATGCAGGTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTA</genome_strand>
        <mrna_strand>GGAAGTCAATCGATCAATCAAAGATAATGAG..............................................................................................................................................................................................................................................CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG..............................................................................ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG..............................................................................GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG............................................................................................................................................................................................................................................................................................................ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGG..........................................................................................................................................................................................................................GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG354-R" ref_strand="+" ref_description="TG354-R">
      <seq>ctcactatagggagacagcctgcatgcctgcagcgactcatatttggcttcgagtttcaagtattccctatagctgctttgctgcaatggctcacaagatggatcaataacttgaaaagggtctatatatataaaaaaaaaaattcttcctttatttgcgaaaaaaattcgatcagaaaaaattgtgatcgagcagcattcgatcatgtcagaaattaaagcaactaacttacatatagtaagttatattatggtaaaaatcatacatacgttcatcctttgaaaaggtgacgtcaacgaaattagtagcatttgttacctcattatctttgattgatcgattgacttccaatgttccatagctgcacttttggtacctatcaagtgttttgagcatactgttgcacaagataaataaaaaggaaaaagttattaatactcaaatgattggattgaatcaaatatgagcaagtataaataaatattcgatccatctttatttaacacggataaaaaaatgtgctagctcgcaactctttttattttaaaaaaaaaaacattttgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="124529" stop="125672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124839" g_stop="125372" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="567" r_length="534" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="TG354-R" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="TG354-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124839" e_stop="125372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACTCATATTTGGCTTTGAGTTTCAAGTATTCCCTATAGCTGCTTTGCTGCAATGGCTCACAAGATGGATCAATAACTTGAAAAGGGTCTATATATATAAAAAAAAAAATTCTTCCTTTATTTGCGAAAAAAATTCGATCAGAAAAAATTGTGATCGAGCAGCATTCGATCATGTCAGAAATTAAAGCAACTAACTTACATATAGTAAGTTATATTATGGTAAAAATCATACATACGTTCATCCTTTGAAAAGGTGACGTCAACGAAATTAGTAGCATTTGTTACCTCATTATCTTTGATTGATCGATTGACTTCCAATGTTCCATAGCTGCACTTTTGGTACCTATCAAGTGTTTTGAGCATACTGTTGCACAAGATAAATAAAAAGGAAAAAGTTATTAATACTCAAATGATTGGATTGAATCAAATATGAGCAAGTATAAATAAATATTCGATCCATCTTTATTTAACACGGATAAAAAAATGTGCTAGCTCGCAACTCTTTTTATTTTAAAAAAAAAAACATTTTGCCT</genome_strand>
        <mrna_strand>CGACTCATATTTGGCTTCGAGTTTCAAGTATTCCCTATAGCTGCTTTGCTGCAATGGCTCACAAGATGGATCAATAACTTGAAAAGGGTCTATATATATAAAAAAAAAAATTCTTCCTTTATTTGCGAAAAAAATTCGATCAGAAAAAATTGTGATCGAGCAGCATTCGATCATGTCAGAAATTAAAGCAACTAACTTACATATAGTAAGTTATATTATGGTAAAAATCATACATACGTTCATCCTTTGAAAAGGTGACGTCAACGAAATTAGTAGCATTTGTTACCTCATTATCTTTGATTGATCGATTGACTTCCAATGTTCCATAGCTGCACTTTTGGTACCTATCAAGTGTTTTGAGCATACTGTTGCACAAGATAAATAAAAAGGAAAAAGTTATTAATACTCAAATGATTGGATTGAATCAAATATGAGCAAGTATAAATAAATATTCGATCCATCTTTATTTAACACGGATAAAAAAATGTGCTAGCTCGCAACTCTTTTTATTTTAAAAAAAAAAACATTTTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG354-F" ref_strand="+" ref_description="TG354-F">
      <seq>ctcactatagggagacagcttgcatgcctgcagcgactcatatttggctttgagtttcaagtattccctatagctgctttgctgcaatggctcacaagatggatcaataacttgaaaagggtctatatatataaaaaaaaaaattcttcctttatttgcgaaaaaaattcgatcagaaaaaattgtgatcgagcagcattcgatcatgtcagaaattaaagcaactaacttacatatagtaagttatattatggtaaaaatcatacatacgttcatcctttgaaaaggtgacgtcaacgaaattagtagcatttgttacctcattatctttgattgatcgattgacttccaatgttccatagctgcacttttggtacctatcaagtgttttgagcatactgttgcacaagataaataagaaggaaaaagttattaatactcaaatgattggattgaatcaaatatgagcaagtataaataaatattcgatccatctttatttaacacggataaaaaaatgtgctagctcgcaactctttttattttaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="+" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="124529" stop="125663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124839" g_stop="125363" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="558" r_length="525" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="+" ref_id="TG354-F" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="+"/>
        <rDNA rDNA_id="TG354-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124839" e_stop="125363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACTCATATTTGGCTTTGAGTTTCAAGTATTCCCTATAGCTGCTTTGCTGCAATGGCTCACAAGATGGATCAATAACTTGAAAAGGGTCTATATATATAAAAAAAAAAATTCTTCCTTTATTTGCGAAAAAAATTCGATCAGAAAAAATTGTGATCGAGCAGCATTCGATCATGTCAGAAATTAAAGCAACTAACTTACATATAGTAAGTTATATTATGGTAAAAATCATACATACGTTCATCCTTTGAAAAGGTGACGTCAACGAAATTAGTAGCATTTGTTACCTCATTATCTTTGATTGATCGATTGACTTCCAATGTTCCATAGCTGCACTTTTGGTACCTATCAAGTGTTTTGAGCATACTGTTGCACAAGATAAATAAAAAGGAAAAAGTTATTAATACTCAAATGATTGGATTGAATCAAATATGAGCAAGTATAAATAAATATTCGATCCATCTTTATTTAACACGGATAAAAAAATGTGCTAGCTCGCAACTCTTTTTATTTTAAAAAAAAAAAC</genome_strand>
        <mrna_strand>CGACTCATATTTGGCTTTGAGTTTCAAGTATTCCCTATAGCTGCTTTGCTGCAATGGCTCACAAGATGGATCAATAACTTGAAAAGGGTCTATATATATAAAAAAAAAAATTCTTCCTTTATTTGCGAAAAAAATTCGATCAGAAAAAATTGTGATCGAGCAGCATTCGATCATGTCAGAAATTAAAGCAACTAACTTACATATAGTAAGTTATATTATGGTAAAAATCATACATACGTTCATCCTTTGAAAAGGTGACGTCAACGAAATTAGTAGCATTTGTTACCTCATTATCTTTGATTGATCGATTGACTTCCAATGTTCCATAGCTGCACTTTTGGTACCTATCAAGTGTTTTGAGCATACTGTTGCACAAGATAAATAAGAAGGAAAAAGTTATTAATACTCAAATGATTGGATTGAATCAAATATGAGCAAGTATAAATAAATATTCGATCCATCTTTATTTAACACGGATAAAAAAATGTGCTAGCTCGCAACTCTTTTTATTTTAAAAAAAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="SSR125" ref_strand="+" ref_description="SSR125">
      <seq>gagcaaatcctaaagttaaaacaatgaatccctaaagaagataggaagaaatgccatagataaaaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagatgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaattatgctcaaaacacttgataggtaccaaaagtgcagctttggaacattggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127455" stop="124851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127156" g_stop="126672" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125151" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="539" r_length="54" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SSR125" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SSR125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127156" e_stop="126672"/>
          <exon e_start="125203" e_stop="125151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAG-TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAG</genome_strand>
        <mrna_strand>GAGCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGATGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTTTGGAACATTGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="SSR570" ref_strand="+" ref_description="SSR570">
      <seq>gagcaaatcctaaagttaaaacaatgaatccctaaagaagataggaagaaatgccatagataaaaacaacccatgttcactttttctctctctaaacattgaaattcaaccaaaacaaaaaacaaaagttgataagaatcctttctttctttctttgtgtgtgtgtgtgtctagctagggtttgcatttctttcacaattttggttgtttcagtaggagagaaaagaggatctaagagttagccaagagaagaaattagtgagaaaataaagtagaaaaagatcatcagaggaaggagggatgggtagaggaagagttgagctgaagaggatagaaaacaagataaatagacaagtcacttttgcaaagaggagaaatggattgctcaaaaaagcttatgaactatctgtgctttgtgatgctgaagatgctctactcgttttctctaatcgtggaaaactctatgaattctgcagcacaaacaattatgctcaaaacacttgataggtaccaaaagtgcagctttggaacattggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0046M08-4HTzf/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0046M08.3" temp_strand="-" temp_description="C02HBa0046M08.3  AC215369.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0046M08 sequenced_by:kribb upload_account_name:korea">
        <position start="127455" stop="124851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127156" g_stop="126672" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125203" g_stop="125151" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="539" r_length="54" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0046M08.3" gen_strand="-" ref_id="SSR570" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0046M08.3" gen_strand="-"/>
        <rDNA rDNA_id="SSR570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127156" e_stop="126672"/>
          <exon e_start="125203" e_stop="125151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAAGTAATTTTTTTTCTTCTCTATTCTAAGATCTGAAATTAGGATTGAAGCTCTATATTATCAAAGATCTGTTACATACAACATGAAAAATCATACTCCCATCCTAAAGTTGTTCATAAAATAAATAAAACATATAGATCTTATGTTTTAGTGCGTTTCTCTAGGAGATCACACTATTTTTGTTTCCTTAGTGACTCGAATTCACAATTTTAGAGTTGGAGATGGAGGTTTTTTATCATCCGAGCAACCTCTCGTGTCAGATCCTGAGTTTTAAAATCGAATAAAGTAAGAAAATGCACTTAATATTGTTTAGATCGATCATTAGACAATCTCTTCTTATAAAGAAAAGAGTAAATGGACCGAGTATAATCGTACCTGCAGATCTGAATAACCAGATAAAACGTCTTCCAGTCCTTAATTCTACGCCTTTTTTGATGATGGCAAATAAGACTGATATGATAAAAGACTCATAATATCCTGTTTTTACCTCTGTGATCATAGACATTTGTGATATAAATCAGTCCACCGGGTATTTCTGCGTGCTTCATAAAGTTCATTCACTTTAAAATTTATAGCTAAATATTGACTTTAATTTATAATAATATATATCAGTTCAAATTTTAAGGAAGCCTAGGAAATATCTTTTGGGTAATCTCATGACATGCATATATATTTTTTTTTTCATCCGTGAAGCAAATTTCTATTTAGTTATCATTTGAGTTGTGACTTCTTTAATAGAAAGACTGTAAATTTAACACGGTGGGGAAATTGTATAGAGTACTTGGATTAGTGTAGTAGTCAAAAATTCATGAAGTTGATTGAGTGGCCTTCAACTTAACATATACGGTTAAAAGAATTTATGTTATTTATATCGTTAGTGTAAGGACTTATCGGGTCATTAAAAAGATGTGATCATTATTGAATATATGCATAATCTTAAAAATAAAAATAATTACAATATACAACAAGTAAATGGATCTAATGAGGAAGTTAGGTACATTAGTAAGTAGCATTTACTTCATATCTCTGTGCATTGAAAACAGTTTTTGAAACTGTTTTCTAACAAGGATTATGGCTAACTCAAGTCAGGTTGGTAATCGTAGTTTTAGAATATGATAAAAAATGATTCATTGGTTTACAATAAGTAGAAATTATTTACATTGTTTGTCCATCATATAAATGTTGATCCAAATAATTTTACAAAGAGGCGTAGATTTTATCCTTAATTATCTCTTGAGTACATTATTCGAACATGTTTAATATTTTCATCCCGTTTATAGCTTTTGCATGGCCATATAGGGCAGGCAAAATGTTTTTTTTTTTAAAATAAAAAGAGTTGCGAGCTAGCACATTTTTTTATCCGTGTTAAATAAAGATGGATCGAATATTTATTTATACTTGCTCATATTTGATTCAATCCAATCATTTGAGTATTAATAACTTTTTCCTTTTTATTTATCTTGTGCAACAG-TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAG</genome_strand>
        <mrna_strand>GAGCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGATGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTTTGGAACATTGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>12</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="48307" PGL_stop="48960"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48307" e_stop="48960"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="48307" e_stop="48960" e_length="654"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48307" stop="48960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG34-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTGCAGGTAAATGAGTTCTCTATATTTCCTATTGTGTAGTTCTTTACATCTACAAACAAGTTGGCGTCAGCTGTATGAATCGTCACTTACGATATTACACCATTTAAACTCATCTCATGCCATTATTATGCAAATACAAATAAAAAACTTTTAAATTTAAATTCTCTATATTTTCTACACTTAAAAATCTCTGTAAGGTAATATTATGCAGTTTTACGTGCATACAAAAGAACCTCTCACCTACCTACCAATCTTCCAAGCACAAGCAATCATTTTTCAACTCTTCTTAGGTTGTTGATTTAAGACAACATTGCGAGTCACCACTAGTTGGTCATAAATGGAGTTGTGTTACTGCATGTTTTTGTTCTTCCTGATCAAAATTTGCAAGGATAATGTTCTTGGTAATAAAGACATGCATGTATTCTTCATTCACAGGCGTAGGTTGTCCACTATCTTGGTGAGGCTGAAGTTTGCTGAACACATGAAGGAAGCAGTGACATACATAGAACAAGGTCATATTCGAGTTGGACCCGATACAGTTGTTGACCCAGCATTTCTCGTGACGAGAAATATGGAGGATTTCATCACTTGGGTAGATACATCTAAGATTAGGAGAAAGGTCTTGGAGTACAACGATCAGCTAGACGATTATG</gDNA_template>
            <first_frame> S  A  G  K  *  V  L  Y  I  S  Y  C  V  V  L  Y  I  Y  K  Q  V  G  V  S  C  M  N  R  H  L  R  Y  Y  T  I  *  T  H  L  M  P  L  L  C  K  Y  K  *  K  T  F  K  F  K  F  S  I  F  S  T  L  K  N  L  C  K  V  I  L  C  S  F  T  C  I  Q  K  N  L  S  P  T  Y  Q  S  S  K  H  K  Q  S  F  F  N  S  S  *  V  V  D  L  R  Q  H  C  E  S  P  L  V  G  H  K  W  S  C  V  T  A  C  F  C  S  S  *  S  K  F  A  R  I  M  F  L  V  I  K  T  C  M  Y  S  S  F  T  G  V  G  C  P  L  S  W  *  G  *  S  L  L  N  T  *  R  K  Q  *  H  T  *  N  K  V  I  F  E  L  D  P  I  Q  L  L  T  Q  H  F  S  *  R  E  I  W  R  I  S  S  L  G  *  I  H  L  R  L  G  E  R  S  W  S  T  T  I  S  *  T  I  M </first_frame>
            <second_frame>  L  Q  V  N  E  F  S  I  F  P  I  V  *  F  F  T  S  T  N  K  L  A  S  A  V  *  I  V  T  Y  D  I  T  P  F  K  L  I  S  C  H  Y  Y  A  N  T  N  K  K  L  L  N  L  N  S  L  Y  F  L  H  L  K  I  S  V  R  *  Y  Y  A  V  L  R  A  Y  K  R  T  S  H  L  P  T  N  L  P  S  T  S  N  H  F  S  T  L  L  R  L  L  I  *  D  N  I  A  S  H  H  *  L  V  I  N  G  V  V  L  L  H  V  F  V  L  P  D  Q  N  L  Q  G  *  C  S  W  *  *  R  H  A  C  I  L  H  S  Q  A  *  V  V  H  Y  L  G  E  A  E  V  C  *  T  H  E  G  S  S  D  I  H  R  T  R  S  Y  S  S  W  T  R  Y  S  C  *  P  S  I  S  R  D  E  K  Y  G  G  F  H  H  L  G  R  Y  I  *  D  *  E  K  G  L  G  V  Q  R  S  A  R  R  L   </second_frame>
            <third_frame>   C  R  *  M  S  S  L  Y  F  L  L  C  S  S  L  H  L  Q  T  S  W  R  Q  L  Y  E  S  S  L  T  I  L  H  H  L  N  S  S  H  A  I  I  M  Q  I  Q  I  K  N  F  *  I  *  I  L  Y  I  F  Y  T  *  K  S  L  *  G  N  I  M  Q  F  Y  V  H  T  K  E  P  L  T  Y  L  P  I  F  Q  A  Q  A  I  I  F  Q  L  F  L  G  C  *  F  K  T  T  L  R  V  T  T  S  W  S  *  M  E  L  C  Y  C  M  F  L  F  F  L  I  K  I  C  K  D  N  V  L  G  N  K  D  M  H  V  F  F  I  H  R  R  R  L  S  T  I  L  V  R  L  K  F  A  E  H  M  K  E  A  V  T  Y  I  E  Q  G  H  I  R  V  G  P  D  T  V  V  D  P  A  F  L  V  T  R  N  M  E  D  F  I  T  W  V  D  T  S  K  I  R  R  K  V  L  E  Y  N  D  Q  L  D  D  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48645" stop="48959"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MELCYCMFLFFLIKICKDNVLGNKDMHVFFIHRRRLSTILVRLKFAEHMKEAVTYIEQGHIRVGPDTVVDPAFLVTRNMEDFITWVDTSKIRRKVLEYNDQLDDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="50659" PGL_stop="50053"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50659" e_stop="50053"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50659" e_stop="50053" e_length="607"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50659" stop="50053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG34-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAATTGATTTGGGGTTCTGATCGGACATCGCCCTGCAAAAAAAAAACCCCAAAATCCAAATTCAGTAACGAAAGCATACCGAAGATGCACAAAAAAAGGAAATAAATTCGAGTGAGATGAAACGAAGAACCAAAAGCACAGCGCAGACAAAAGATGAAGGTACATAAAAAGTGAGAGAGAAAATCTGTATTTACAGTGATGAGAAGCACCGTAATAAGCACGCTAAGTACTAAAATGTATTAATGACTTATTAAGTACGCTAAAGGTAAAATCGTGTATTTAAACGCTCGGAGGAAACAAAATAACCTAAGAATATATAAAAATTATACATTTATGGTAACTATGTAAGTTAAAAAAATTTATTTCCATAATTATTTTTATATACGTGGTCGTTTTACATTTCATATTCATCAAGAAAACTAGATAAGTTTATCGTTATATATTTATTTAGTGTTCTTTTTAAAGTCAAAATTTTTAATTACTGAAAATAAATTAAATTACGTTGACTAATTAAATTGACCAATGAACCAGAATTAATTATTTAGTTTCTTACATTATACGCTTATAACTCTTAAGGATAAAATAGAAAGCGTAATATTATTTAC</gDNA_template>
            <first_frame> Q  N  *  F  G  V  L  I  G  H  R  P  A  K  K  K  P  Q  N  P  N  S  V  T  K  A  Y  R  R  C  T  K  K  G  N  K  F  E  *  D  E  T  K  N  Q  K  H  S  A  D  K  R  *  R  Y  I  K  S  E  R  E  N  L  Y  L  Q  *  *  E  A  P  *  *  A  R  *  V  L  K  C  I  N  D  L  L  S  T  L  K  V  K  S  C  I  *  T  L  G  G  N  K  I  T  *  E  Y  I  K  I  I  H  L  W  *  L  C  K  L  K  K  F  I  S  I  I  I  F  I  Y  V  V  V  L  H  F  I  F  I  K  K  T  R  *  V  Y  R  Y  I  F  I  *  C  S  F  *  S  Q  N  F  *  L  L  K  I  N  *  I  T  L  T  N  *  I  D  Q  *  T  R  I  N  Y  L  V  S  Y  I  I  R  L  *  L  L  R  I  K  *  K  A  *  Y  Y  L  </first_frame>
            <second_frame>  K  I  D  L  G  F  *  S  D  I  A  L  Q  K  K  N  P  K  I  Q  I  Q  *  R  K  H  T  E  D  A  Q  K  K  E  I  N  S  S  E  M  K  R  R  T  K  S  T  A  Q  T  K  D  E  G  T  *  K  V  R  E  K  I  C  I  Y  S  D  E  K  H  R  N  K  H  A  K  Y  *  N  V  L  M  T  Y  *  V  R  *  R  *  N  R  V  F  K  R  S  E  E  T  K  *  P  K  N  I  *  K  L  Y  I  Y  G  N  Y  V  S  *  K  N  L  F  P  *  L  F  L  Y  T  W  S  F  Y  I  S  Y  S  S  R  K  L  D  K  F  I  V  I  Y  L  F  S  V  L  F  K  V  K  I  F  N  Y  *  K  *  I  K  L  R  *  L  I  K  L  T  N  E  P  E  L  I  I  *  F  L  T  L  Y  A  Y  N  S  *  G  *  N  R  K  R  N  I  I  Y </second_frame>
            <third_frame>   K  L  I  W  G  S  D  R  T  S  P  C  K  K  K  T  P  K  S  K  F  S  N  E  S  I  P  K  M  H  K  K  R  K  *  I  R  V  R  *  N  E  E  P  K  A  Q  R  R  Q  K  M  K  V  H  K  K  *  E  R  K  S  V  F  T  V  M  R  S  T  V  I  S  T  L  S  T  K  M  Y  *  *  L  I  K  Y  A  K  G  K  I  V  Y  L  N  A  R  R  K  Q  N  N  L  R  I  Y  K  N  Y  T  F  M  V  T  M  *  V  K  K  I  Y  F  H  N  Y  F  Y  I  R  G  R  F  T  F  H  I  H  Q  E  N  *  I  S  L  S  L  Y  I  Y  L  V  F  F  L  K  S  K  F  L  I  T  E  N  K  L  N  Y  V  D  *  L  N  *  P  M  N  Q  N  *  L  F  S  F  L  H  Y  T  L  I  T  L  K  D  K  I  E  S  V  I  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0046M08.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="57588" PGL_stop="57072"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57588" e_stop="57072"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="57588" e_stop="57072" e_length="517"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57588" stop="57072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T1486" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGAACCAGCTGAGGGTATTCTTTTGATTGTGGAGAGCTTAACACTAGAAGCAAATGAGAGTGATAACATCAGCATTACTTCTGATGTAGATGTAGTCTCCAGTGATGAAGCAGGTGCTGGTGAACAGGCAAAGAAAATTGTACTACTTTTCCTTGAAAGATTGTCCCATCCATCTGGACTTAGAAAGTCAAATAAGCAGCAGAGGAACACTGAGATGGTCGCAAGAATATTGCCTTACTTGACGTACGGGGAACCTGCAGCAATGGAAGCTCTTGTACAGCATTTTGAACCTTGTTTACAGAATTGGCGCGAATTTGATAGGCTGCAAAAACTTTACGAAGACAATATGAATGATGAAACAATTGCGCAGCAAGCTTCAAAGCAAAAATACACCCTAGAGAATTTTGTTAGGGTTTCAGAATCCCTCAAGACAAGTTCTTGTGGAGAGAGGTTGAAAGATATTATACTGGAAAAAGGGATTACTGGGGCTGCAATCAGCCATCTAAAAGAAACCTT</gDNA_template>
            <first_frame> W  N  Q  L  R  V  F  F  *  L  W  R  A  *  H  *  K  Q  M  R  V  I  T  S  A  L  L  L  M  *  M  *  S  P  V  M  K  Q  V  L  V  N  R  Q  R  K  L  Y  Y  F  S  L  K  D  C  P  I  H  L  D  L  E  S  Q  I  S  S  R  G  T  L  R  W  S  Q  E  Y  C  L  T  *  R  T  G  N  L  Q  Q  W  K  L  L  Y  S  I  L  N  L  V  Y  R  I  G  A  N  L  I  G  C  K  N  F  T  K  T  I  *  M  M  K  Q  L  R  S  K  L  Q  S  K  N  T  P  *  R  I  L  L  G  F  Q  N  P  S  R  Q  V  L  V  E  R  G  *  K  I  L  Y  W  K  K  G  L  L  G  L  Q  S  A  I  *  K  K  P  </first_frame>
            <second_frame>  G  T  S  *  G  Y  S  F  D  C  G  E  L  N  T  R  S  K  *  E  *  *  H  Q  H  Y  F  *  C  R  C  S  L  Q  *  *  S  R  C  W  *  T  G  K  E  N  C  T  T  F  P  *  K  I  V  P  S  I  W  T  *  K  V  K  *  A  A  E  E  H  *  D  G  R  K  N  I  A  L  L  D  V  R  G  T  C  S  N  G  S  S  C  T  A  F  *  T  L  F  T  E  L  A  R  I  *  *  A  A  K  T  L  R  R  Q  Y  E  *  *  N  N  C  A  A  S  F  K  A  K  I  H  P  R  E  F  C  *  G  F  R  I  P  Q  D  K  F  L  W  R  E  V  E  R  Y  Y  T  G  K  R  D  Y  W  G  C  N  Q  P  S  K  R  N  L </second_frame>
            <third_frame>   E  P  A  E  G  I  L  L  I  V  E  S  L  T  L  E  A  N  E  S  D  N  I  S  I  T  S  D  V  D  V  V  S  S  D  E  A  G  A  G  E  Q  A  K  K  I  V  L  L  F  L  E  R  L  S  H  P  S  G  L  R  K  S  N  K  Q  Q  R  N  T  E  M  V  A  R  I  L  P  Y  L  T  Y  G  E  P  A  A  M  E  A  L  V  Q  H  F  E  P  C  L  Q  N  W  R  E  F  D  R  L  Q  K  L  Y  E  D  N  M  N  D  E  T  I  A  Q  Q  A  S  K  Q  K  Y  T  L  E  N  F  V  R  V  S  E  S  L  K  T  S  S  C  G  E  R  L  K  D  I  I  L  E  K  G  I  T  G  A  A  I  S  H  L  K  E  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57586" stop="57074"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPAEGILLIVESLTLEANESDNISITSDVDVVSSDEAGAGEQAKKIVLLFLERLSHPSGLRKSNKQQRNTEMVARILPYLTYGEPAAMEALVQHFEPCLQNWREFDRLQKLYEDNMNDETIAQQASKQKYTLENFVRVSESLKTSSCGERLKDIILEKGITGAAISHLKET</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="103583" PGL_stop="108419"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103606" e_stop="104071"/>
            <exon e_start="104796" e_stop="104989"/>
            <exon e_start="105075" e_stop="105122"/>
            <exon e_start="105400" e_stop="105472"/>
            <exon e_start="105689" e_stop="105860"/>
            <exon e_start="107377" e_stop="107808"/>
            <exon e_start="107895" e_stop="108086"/>
            <exon e_start="108202" e_stop="108419"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.792" e_score="0.940"/>
          <exon-intron don_prob="0.923" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.923" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.253" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.256" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="103606" e_stop="104071" e_length="466"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.792">
            <gDNA_intron_boundary i_start="104072" i_stop="104795" i_length="724"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="104796" e_stop="104989" e_length="194"/>
          </exon>
          <intron i_serial="2" don_prob="0.923" acc_prob="0.998">
            <gDNA_intron_boundary i_start="104990" i_stop="105074" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="105075" e_stop="105122" e_length="48"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.932">
            <gDNA_intron_boundary i_start="105123" i_stop="105399" i_length="277"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="105400" e_stop="105472" e_length="73"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.961">
            <gDNA_intron_boundary i_start="105473" i_stop="105688" i_length="216"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="105689" e_stop="105860" e_length="172"/>
          </exon>
          <intron i_serial="5" don_prob="0.923" acc_prob="0.990">
            <gDNA_intron_boundary i_start="105861" i_stop="107376" i_length="1516"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="107377" e_stop="107808" e_length="432"/>
          </exon>
          <intron i_serial="6" don_prob="0.253" acc_prob="0.978">
            <gDNA_intron_boundary i_start="107809" i_stop="107894" i_length="86"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="107895" e_stop="108086" e_length="192"/>
          </exon>
          <intron i_serial="7" don_prob="0.256" acc_prob="0.997">
            <gDNA_intron_boundary i_start="108087" i_stop="108201" i_length="115"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="108202" e_stop="108419" e_length="218"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103606" stop="104071"/>
              <exon start="104796" stop="104989"/>
              <exon start="105075" stop="105122"/>
              <exon start="105400" stop="105472"/>
              <exon start="105689" stop="105860"/>
              <exon start="107377" stop="107808"/>
              <exon start="107895" stop="108086"/>
              <exon start="108202" stop="108419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At3g02300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107668" stop="107808"/>
              <exon start="107895" stop="108086"/>
              <exon start="108202" stop="108230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T0347" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCCATTGTTTCTCGATTTCATCGTAAGTTTTTCACTGCTTACATTTATTTTTTAGAGTCAAAGTTAGGGACTTGGGTTCAAAAACAGTAGTTAAAGATCATAGTTTTTTTTTGTAATTTATGGTTCATTTTTGTTGATAGTGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGG : GAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATTGTACTGTTGCCATTGCAGAACCACGTGAAAACGATGGTAGCATGTCAGCTCGGAGACTTTGGGTTTGGGGACAGAACCAG : GGATCCAATTACCCACGACTCTTTTGGGGTGCCTTTTCTCCTTCTACG : GTTATTCGCCAAGTTTCTTGTGGTGCTGTTCATGTTGTAGCTCTATCAGAAGAAGGGTTACTACAAGCTTGGG : GCTATAATGAATATGGTCAGCTTGGCAGAGGTGTTACATCAGAAGGCCTTCAAGGCCCTTGTGTAATTAATGGATATGCTAGATTTCTTGATGAAGCCCCTGAACTTGTGAAGATTACCCAAGTGTCATGCGGGGAGTACCATACTGCAGCTATATCAGAGAAAGGCGAGGT : CTATACGTGGGGATTGGGGAGCGTGGGACAACTTGGCCATTGTTCACTTCAGTCAGGTGACAAGGAACTTTTACCTAGGCGTGTAGTTTCCCTTGATGGCATATGTATTAAAGAAGTTGCCTGTGGTGGTGTTCACACCTGTGCTGTGACTGCGAAAGGGGCTCTTTATGCTTGGGGTGGAGGTCAGGCTGGGCAATTGGGAGTTGGGCCATTAAATGGATTCTTTTCATGCAAGCTCAATGAATCTGAGATGATGCTCCGAAATATACCAGTGTTGGTTGTTCCAGATGGTGTGCAACTCGTTGCATGTGGTCATTCACACACACTTACTTCTGCTAAAGACGGACGAATACATGGATGGGGTTATAACTGCTATGGTCAAGCGGCTAATGAGAAGTCTACATATGCCTGGTGTCCATCACCAGTTGATTG : GTGTGTTGGGGCAGTCCGAAAATTGGCTGCTGGTGGTGGACATTCAGCAGTGCTGACTGATGCATGCTCTCTAAAAGAGCTGTGTGAATTTAGGCTTGCAGAAACAGTGAATCCATCCAATGCTTCAGTGGTTGAGGATGTCGCCTCAAGAACAGGAGCTGATGCTTTAGCACGACTTTGTGAAAGATTGAG : GGAGCATTACTACAATGATGATGAGTTTGGTCTGTGAAATCATTGATGGGTGTTAAATATGTAACATACCAATAATTCAGCCATTAGATTTGATTCTTCAATCCATCTAATACAATAGAGAAAACAGAGTCTTTGTTTCATCATTGAATAAATGTATTCTACTTTTTATGCTGCTGCATCATTAAGTTAATACAACAAAACATCTACTTACAATTTAA</gDNA_template>
            <first_frame> P  I  S  L  E  L  K  L  Q  P  *  I  L  Q  I  F  R  I  K  L  L  P  L  F  L  D  F  I  V  S  F  S  L  L  T  F  I  F  *  S  Q  S  *  G  L  G  F  K  N  S  S  *  R  S  *  F  F  F  V  I  Y  G  S  F  L  L  I  V  R  N  K  M  D  I  D  E  I  L  G  V  S  R  P  V  S  L  T  N  K  S  A  I  Y  V  W  G  Y  N  Q  S  G  Q  T  G  R  R  G  K  E  R  S  L  R  I  P  K  Q  L  P  P  E  L  F  G  C  P  A  G  G  N  S  R  W  L  D  I  A  C  G  R  E  H  T  A  A  V  A  S  D  G  S  L  F  T  W   : G  A  N  E  F  G  Q  L  G  D  G  T  E  N  A  R  K  H  P  K  K  V  K  Q  L  Q  S  E  F  V  I  S  V  S  C  G  A  H  C  T  V  A  I  A  E  P  R  E  N  D  G  S  M  S  A  R  R  L  W  V  W  G  Q  N  Q  :  G  S  N  Y  P  R  L  F  W  G  A  F  S  P  S  T  :  V  I  R  Q  V  S  C  G  A  V  H  V  V  A  L  S  E  E  G  L  L  Q  A  W   : G  Y  N  E  Y  G  Q  L  G  R  G  V  T  S  E  G  L  Q  G  P  C  V  I  N  G  Y  A  R  F  L  D  E  A  P  E  L  V  K  I  T  Q  V  S  C  G  E  Y  H  T  A  A  I  S  E  K  G  E  V :   Y  T  W  G  L  G  S  V  G  Q  L  G  H  C  S  L  Q  S  G  D  K  E  L  L  P  R  R  V  V  S  L  D  G  I  C  I  K  E  V  A  C  G  G  V  H  T  C  A  V  T  A  K  G  A  L  Y  A  W  G  G  G  Q  A  G  Q  L  G  V  G  P  L  N  G  F  F  S  C  K  L  N  E  S  E  M  M  L  R  N  I  P  V  L  V  V  P  D  G  V  Q  L  V  A  C  G  H  S  H  T  L  T  S  A  K  D  G  R  I  H  G  W  G  Y  N  C  Y  G  Q  A  A  N  E  K  S  T  Y  A  W  C  P  S  P  V  D  W :   C  V  G  A  V  R  K  L  A  A  G  G  G  H  S  A  V  L  T  D  A  C  S  L  K  E  L  C  E  F  R  L  A  E  T  V  N  P  S  N  A  S  V  V  E  D  V  A  S  R  T  G  A  D  A  L  A  R  L  C  E  R  L  R :   E  H  Y  Y  N  D  D  E  F  G  L  *  N  H  *  W  V  L  N  M  *  H  T  N  N  S  A  I  R  F  D  S  S  I  H  L  I  Q  *  R  K  Q  S  L  C  F  I  I  E  *  M  Y  S  T  F  Y  A  A  A  S  L  S  *  Y  N  K  T  S  T  Y  N  L  </first_frame>
            <second_frame>  Q  F  L  W  S  S  N  C  N  L  R  F  F  K  F  S  G  *  N  Y  F  H  C  F  S  I  S  S  *  V  F  H  C  L  H  L  F  F  R  V  K  V  R  D  L  G  S  K  T  V  V  K  D  H  S  F  F  L  *  F  M  V  H  F  C  *  *  *  E  I  K  W  I  L  M  K  Y  L  G  Y  L  G  L  *  V  *  Q  T  R  V  L  F  M  F  G  V  T  I  N  L  G  K  R  V  G  E  G  K  R  G  V  *  G  S  Q  N  S  F  L  Q  S  Y  L  D  A  Q  L  V  G  I  P  V  G  W  I  L  L  V  V  V  S  I  L  L  L  W  L  L  M  D  R  F  L  H  G  :  E  L  T  N  L  V  S  W  V  T  E  L  K  M  L  G  S  T  P  R  K  *  N  N  C  N  L  N  L  L  L  V  F  H  V  E  H  I  V  L  L  P  L  Q  N  H  V  K  T  M  V  A  C  Q  L  G  D  F  G  F  G  D  R  T  R :   D  P  I  T  H  D  S  F  G  V  P  F  L  L  L  R :   L  F  A  K  F  L  V  V  L  F  M  L  *  L  Y  Q  K  K  G  Y  Y  K  L  G  :  A  I  M  N  M  V  S  L  A  E  V  L  H  Q  K  A  F  K  A  L  V  *  L  M  D  M  L  D  F  L  M  K  P  L  N  L  *  R  L  P  K  C  H  A  G  S  T  I  L  Q  L  Y  Q  R  K  A  R   : S  I  R  G  D  W  G  A  W  D  N  L  A  I  V  H  F  S  Q  V  T  R  N  F  Y  L  G  V  *  F  P  L  M  A  Y  V  L  K  K  L  P  V  V  V  F  T  P  V  L  *  L  R  K  G  L  F  M  L  G  V  E  V  R  L  G  N  W  E  L  G  H  *  M  D  S  F  H  A  S  S  M  N  L  R  *  C  S  E  I  Y  Q  C  W  L  F  Q  M  V  C  N  S  L  H  V  V  I  H  T  H  L  L  L  L  K  T  D  E  Y  M  D  G  V  I  T  A  M  V  K  R  L  M  R  S  L  H  M  P  G  V  H  H  Q  L  I   : G  V  L  G  Q  S  E  N  W  L  L  V  V  D  I  Q  Q  C  *  L  M  H  A  L  *  K  S  C  V  N  L  G  L  Q  K  Q  *  I  H  P  M  L  Q  W  L  R  M  S  P  Q  E  Q  E  L  M  L  *  H  D  F  V  K  D  *   : G  S  I  T  T  M  M  M  S  L  V  C  E  I  I  D  G  C  *  I  C  N  I  P  I  I  Q  P  L  D  L  I  L  Q  S  I  *  Y  N  R  E  N  R  V  F  V  S  S  L  N  K  C  I  L  L  F  M  L  L  H  H  *  V  N  T  T  K  H  L  L  T  I  * </second_frame>
            <third_frame>   N  F  F  G  A  Q  T  A  T  L  D  S  S  N  F  P  D  K  I  T  S  I  V  S  R  F  H  R  K  F  F  T  A  Y  I  Y  F  L  E  S  K  L  G  T  W  V  Q  K  Q  *  L  K  I  I  V  F  F  C  N  L  W  F  I  F  V  D  S  E  K  *  N  G  Y  *  *  N  T  W  G  I  S  A  C  E  F  D  K  Q  E  C  Y  L  C  L  G  L  Q  S  I  W  A  N  G  S  E  R  E  R  E  E  F  E  D  P  K  T  A  S  S  R  A  I  W  M  P  S  W  W  E  F  P  L  V  G  Y  C  L  W  S  *  A  Y  C  C  C  G  F  *  W  I  A  F  Y  M  G :   S  *  R  I  W  S  A  G  *  R  N  *  K  C  *  E  A  P  Q  E  S  E  T  I  A  I  *  I  C  Y  *  C  F  M  W  S  T  L  Y  C  C  H  C  R  T  T  *  K  R  W  *  H  V  S  S  E  T  L  G  L  G  T  E  P   : G  I  Q  L  P  T  T  L  L  G  C  L  F  S  F  Y   : G  Y  S  P  S  F  L  W  C  C  S  C  C  S  S  I  R  R  R  V  T  T  S  L  G :   L  *  *  I  W  S  A  W  Q  R  C  Y  I  R  R  P  S  R  P  L  C  N  *  W  I  C  *  I  S  *  *  S  P  *  T  C  E  D  Y  P  S  V  M  R  G  V  P  Y  C  S  Y  I  R  E  R  R  G  :  L  Y  V  G  I  G  E  R  G  T  T  W  P  L  F  T  S  V  R  *  Q  G  T  F  T  *  A  C  S  F  P  *  W  H  M  Y  *  R  S  C  L  W  W  C  S  H  L  C  C  D  C  E  R  G  S  L  C  L  G  W  R  S  G  W  A  I  G  S  W  A  I  K  W  I  L  F  M  Q  A  Q  *  I  *  D  D  A  P  K  Y  T  S  V  G  C  S  R  W  C  A  T  R  C  M  W  S  F  T  H  T  Y  F  C  *  R  R  T  N  T  W  M  G  L  *  L  L  W  S  S  G  *  *  E  V  Y  I  C  L  V  S  I  T  S  *  L  :  V  C  W  G  S  P  K  I  G  C  W  W  W  T  F  S  S  A  D  *  C  M  L  S  K  R  A  V  *  I  *  A  C  R  N  S  E  S  I  Q  C  F  S  G  *  G  C  R  L  K  N  R  S  *  C  F  S  T  T  L  *  K  I  E  :  G  A  L  L  Q  *  *  *  V  W  S  V  K  S  L  M  G  V  K  Y  V  T  Y  Q  *  F  S  H  *  I  *  F  F  N  P  S  N  T  I  E  K  T  E  S  L  F  H  H  *  I  N  V  F  Y  F  L  C  C  C  I  I  K  L  I  Q  Q  N  I  Y  L  Q  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103771" stop="104071"/>
                    <exon start="104796" stop="104989"/>
                    <exon start="105075" stop="105122"/>
                    <exon start="105400" stop="105472"/>
                    <exon start="105689" stop="105860"/>
                    <exon start="107377" stop="107808"/>
                    <exon start="107895" stop="108086"/>
                    <exon start="108202" stop="108238"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1446</number_coding_nucleotides>
                  <number_encoded_amino_acids>482</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFFVIYGSFLLIVRNKMDIDEILGVSRPVSLTNKSAIYVWGYNQSGQTGRRGKERSLRIPKQLPPELFGCPAGGNSRWLDIACGREHTAAVASDGSLFTWGANEFGQLGDGTENARKHPKKVKQLQSEFVISVSCGAHCTVAIAEPRENDGSMSARRLWVWGQNQGSNYPRLFWGAFSPSTVIRQVSCGAVHVVALSEEGLLQAWGYNEYGQLGRGVTSEGLQGPCVINGYARFLDEAPELVKITQVSCGEYHTAAISEKGEVYTWGLGSVGQLGHCSLQSGDKELLPRRVVSLDGICIKEVACGGVHTCAVTAKGALYAWGGGQAGQLGVGPLNGFFSCKLNESEMMLRNIPVLVVPDGVQLVACGHSHTLTSAKDGRIHGWGYNCYGQAANEKSTYAWCPSPVDWCVGAVRKLAAGGGHSAVLTDACSLKELCEFRLAETVNPSNASVVEDVASRTGADALARLCERLREHYYNDDEFGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="103583" e_stop="103689"/>
            <exon e_start="103808" e_stop="104071"/>
            <exon e_start="104796" e_stop="104909"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.924" acc_prob="0.978" e_score="0.972"/>
          <exon-intron don_prob="0.993" acc_prob="0.792" e_score="0.985"/>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="103583" e_stop="103689" e_length="107"/>
          </exon>
          <intron i_serial="1" don_prob="0.924" acc_prob="0.978">
            <gDNA_intron_boundary i_start="103690" i_stop="103807" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="103808" e_stop="104071" e_length="264"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.792">
            <gDNA_intron_boundary i_start="104072" i_stop="104795" i_length="724"/>
          </intron>
          <exon e_serial="3" e_score="0.930">
            <gDNA_exon_boundary e_start="104796" e_stop="104909" e_length="114"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103583" stop="103689"/>
              <exon start="103808" stop="104071"/>
              <exon start="104796" stop="104909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T1076" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGCAGTCCTGTCCTCCCTCCATCCAATTTCTTTGGAGCTCAAACTGCAACCTTAGATTCTTCAAATTTTCCGGATAAAATTACTTCCATTGTTTCTCGATTTCATC : TGAGAAATAAAATGGATATTGATGAAATACTTGGGGTATCTCGGCCTGTGAGTTTGACAAACAAGAGTGCTATTTATGTTTGGGGTTACAATCAATCTGGGCAAACGGGTCGGAGAGGGAAAGAGAGGAGTTTGAGGATCCCAAAACAGCTTCCTCCAGAGCTATTTGGATGCCCAGCTGGTGGGAATTCCCGTTGGTTGGATATTGCTTGTGGTCGTGAGCATACTGCTGCTGTGGCTTCTGATGGATCGCTTTTTACATGGG : GAGCTAACGAATTTGGTCAGCTGGGTGACGGAACTGAAAATGCTAGGAAGCACCCCAAGAAAGTGAAACAATTGCAATCTGAATTTGTTATTAGTGTTTCATGTGGAGCACATT</gDNA_template>
            <first_frame> W  Q  S  C  P  P  S  I  Q  F  L  W  S  S  N  C  N  L  R  F  F  K  F  S  G  *  N  Y  F  H  C  F  S  I  S  S :   E  K  *  N  G  Y  *  *  N  T  W  G  I  S  A  C  E  F  D  K  Q  E  C  Y  L  C  L  G  L  Q  S  I  W  A  N  G  S  E  R  E  R  E  E  F  E  D  P  K  T  A  S  S  R  A  I  W  M  P  S  W  W  E  F  P  L  V  G  Y  C  L  W  S  *  A  Y  C  C  C  G  F  *  W  I  A  F  Y  M  G :   S  *  R  I  W  S  A  G  *  R  N  *  K  C  *  E  A  P  Q  E  S  E  T  I  A  I  *  I  C  Y  *  C  F  M  W  S  T   </first_frame>
            <second_frame>  G  S  P  V  L  P  P  S  N  F  F  G  A  Q  T  A  T  L  D  S  S  N  F  P  D  K  I  T  S  I  V  S  R  F  H   : L  R  N  K  M  D  I  D  E  I  L  G  V  S  R  P  V  S  L  T  N  K  S  A  I  Y  V  W  G  Y  N  Q  S  G  Q  T  G  R  R  G  K  E  R  S  L  R  I  P  K  Q  L  P  P  E  L  F  G  C  P  A  G  G  N  S  R  W  L  D  I  A  C  G  R  E  H  T  A  A  V  A  S  D  G  S  L  F  T  W   : G  A  N  E  F  G  Q  L  G  D  G  T  E  N  A  R  K  H  P  K  K  V  K  Q  L  Q  S  E  F  V  I  S  V  S  C  G  A  H  </second_frame>
            <third_frame>   A  V  L  S  S  L  H  P  I  S  L  E  L  K  L  Q  P  *  I  L  Q  I  F  R  I  K  L  L  P  L  F  L  D  F  I  :  *  E  I  K  W  I  L  M  K  Y  L  G  Y  L  G  L  *  V  *  Q  T  R  V  L  F  M  F  G  V  T  I  N  L  G  K  R  V  G  E  G  K  R  G  V  *  G  S  Q  N  S  F  L  Q  S  Y  L  D  A  Q  L  V  G  I  P  V  G  W  I  L  L  V  V  V  S  I  L  L  L  W  L  L  M  D  R  F  L  H  G  :  E  L  T  N  L  V  S  W  V  T  E  L  K  M  L  G  S  T  P  R  K  *  N  N  C  N  L  N  L  L  L  V  F  H  V  E  H  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="103584" stop="103689"/>
                    <exon start="103808" stop="104071"/>
                    <exon start="104796" stop="104908"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSPVLPPSNFFGAQTATLDSSNFPDKITSIVSRFHLRNKMDIDEILGVSRPVSLTNKSAIYVWGYNQSGQTGRRGKERSLRIPKQLPPELFGCPAGGNSRWLDIACGREHTAAVASDGSLFTWGANEFGQLGDGTENARKHPKKVKQLQSEFVISVSCGAH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="113303" PGL_stop="109061"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113303" e_stop="113044"/>
            <exon e_start="110483" e_stop="110405"/>
            <exon e_start="109665" e_stop="109601"/>
            <exon e_start="109437" e_stop="109338"/>
            <exon e_start="109258" e_stop="109217"/>
            <exon e_start="109088" e_stop="109061"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.971" e_score="0.996"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="113303" e_stop="113044" e_length="260"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.971">
            <gDNA_intron_boundary i_start="113043" i_stop="110484" i_length="2560"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="110483" e_stop="110405" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="110404" i_stop="109666" i_length="739"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="109665" e_stop="109601" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.971" acc_prob="0.999">
            <gDNA_intron_boundary i_start="109600" i_stop="109438" i_length="163"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="109437" e_stop="109338" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.985">
            <gDNA_intron_boundary i_start="109337" i_stop="109259" i_length="79"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="109258" e_stop="109217" e_length="42"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.993">
            <gDNA_intron_boundary i_start="109216" i_stop="109089" i_length="128"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="109088" e_stop="109061" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113303" stop="113044"/>
              <exon start="110483" stop="110405"/>
              <exon start="109665" stop="109601"/>
              <exon start="109437" stop="109338"/>
              <exon start="109258" stop="109217"/>
              <exon start="109088" stop="109061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="P61" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCTCTATCTATGCTAGGTAGCTTATATGATTTAATAGTTCGATTAATTTAAATACGCATTAAAGATAGAGGATGGGAAGAGGTAGGGTAGAGTTGAAACGGATCGAGAACAAAATAAGCAGACAAGTAACATTCTCAAAGAGACGATCTGGATTATTGAAGAAAGCTAATGAGATCTCAGTATTATGTGATGCTGATGTTGCATTGATTGTGTTTTCTACCAAAGGCAAACTTTTCGAGTATTCCTCAAATGACTCAAG : TATGGAAAGTATTCTTGAAAGATATGAAAGATGCTCATATGCAGAGAGACAGATGAATGCTAATGATTCTGATCCCAAG : GAAAATTGGAGTGTGGAGTATCCGAAGCTCATGTCAAGAATTGAACTTTTACAAAGAAATATAAG : GCATTACATGGGTCAGGATCTGGACCCTCTCAGTTTGCGTGAGCTCCAGAGTATAGAGCAACAGATTGATACTTCATTAAAGAGAATTAGAAGCAGGAAG : AATCAACTGATGCACGAGTCCATTTCTGAGCTGCAGAAAAAG : GAGAAAGCGCTCCAAGAACAAAACAACT</gDNA_template>
            <first_frame> L  S  I  Y  A  R  *  L  I  *  F  N  S  S  I  N  L  N  T  H  *  R  *  R  M  G  R  G  R  V  E  L  K  R  I  E  N  K  I  S  R  Q  V  T  F  S  K  R  R  S  G  L  L  K  K  A  N  E  I  S  V  L  C  D  A  D  V  A  L  I  V  F  S  T  K  G  K  L  F  E  Y  S  S  N  D  S  S :   M  E  S  I  L  E  R  Y  E  R  C  S  Y  A  E  R  Q  M  N  A  N  D  S  D  P  K  :  E  N  W  S  V  E  Y  P  K  L  M  S  R  I  E  L  L  Q  R  N  I  R :   H  Y  M  G  Q  D  L  D  P  L  S  L  R  E  L  Q  S  I  E  Q  Q  I  D  T  S  L  K  R  I  R  S  R  K  :  N  Q  L  M  H  E  S  I  S  E  L  Q  K  K  :  E  K  A  L  Q  E  Q  N  N  </first_frame>
            <second_frame>  S  L  S  M  L  G  S  L  Y  D  L  I  V  R  L  I  *  I  R  I  K  D  R  G  W  E  E  V  G  *  S  *  N  G  S  R  T  K  *  A  D  K  *  H  S  Q  R  D  D  L  D  Y  *  R  K  L  M  R  S  Q  Y  Y  V  M  L  M  L  H  *  L  C  F  L  P  K  A  N  F  S  S  I  P  Q  M  T  Q   : V  W  K  V  F  L  K  D  M  K  D  A  H  M  Q  R  D  R  *  M  L  M  I  L  I  P  R :   K  I  G  V  W  S  I  R  S  S  C  Q  E  L  N  F  Y  K  E  I  *   : G  I  T  W  V  R  I  W  T  L  S  V  C  V  S  S  R  V  *  S  N  R  L  I  L  H  *  R  E  L  E  A  G  R :   I  N  *  C  T  S  P  F  L  S  C  R  K  R :   R  K  R  S  K  N  K  T  T </second_frame>
            <third_frame>   L  Y  L  C  *  V  A  Y  M  I  *  *  F  D  *  F  K  Y  A  L  K  I  E  D  G  K  R  *  G  R  V  E  T  D  R  E  Q  N  K  Q  T  S  N  I  L  K  E  T  I  W  I  I  E  E  S  *  *  D  L  S  I  M  *  C  *  C  C  I  D  C  V  F  Y  Q  R  Q  T  F  R  V  F  L  K  *  L  K  :  Y  G  K  Y  S  *  K  I  *  K  M  L  I  C  R  E  T  D  E  C  *  *  F  *  S  Q   : G  K  L  E  C  G  V  S  E  A  H  V  K  N  *  T  F  T  K  K  Y  K  :  A  L  H  G  S  G  S  G  P  S  Q  F  A  *  A  P  E  Y  R  A  T  D  *  Y  F  I  K  E  N  *  K  Q  E   : E  S  T  D  A  R  V  H  F  *  A  A  E  K   : G  E  S  A  P  R  T  K  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113234" stop="113044"/>
                    <exon start="110483" stop="110405"/>
                    <exon start="109665" stop="109601"/>
                    <exon start="109437" stop="109338"/>
                    <exon start="109258" stop="109217"/>
                    <exon start="109088" stop="109062"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RMGRGRVELKRIENKISRQVTFSKRRSGLLKKANEISVLCDADVALIVFSTKGKLFEYSSNDSSMESILERYERCSYAERQMNANDSDPKENWSVEYPKLMSRIELLQRNIRHYMGQDLDPLSLRELQSIEQQIDTSLKRIRSRKNQLMHESISELQKKEKALQEQNN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="127156" PGL_stop="122817"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="127156" e_stop="126672"/>
            <exon e_start="125203" e_stop="125125"/>
            <exon e_start="124886" e_stop="124822"/>
            <exon e_start="123957" e_stop="123858"/>
            <exon e_start="123779" e_stop="123738"/>
            <exon e_start="123659" e_stop="123618"/>
            <exon e_start="123317" e_stop="123178"/>
            <exon e_start="122959" e_stop="122817"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.917" e_score="0.996"/>
          <exon-intron don_prob="0.840" acc_prob="0.890" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.604" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="127156" e_stop="126672" e_length="485"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.917">
            <gDNA_intron_boundary i_start="126671" i_stop="125204" i_length="1468"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="125203" e_stop="125125" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.840" acc_prob="0.890">
            <gDNA_intron_boundary i_start="125124" i_stop="124887" i_length="238"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="124886" e_stop="124822" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="124821" i_stop="123958" i_length="864"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="123957" e_stop="123858" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.604">
            <gDNA_intron_boundary i_start="123857" i_stop="123780" i_length="78"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="123779" e_stop="123738" e_length="42"/>
          </exon>
          <intron i_serial="5" don_prob="0.943" acc_prob="0.983">
            <gDNA_intron_boundary i_start="123737" i_stop="123660" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="123659" e_stop="123618" e_length="42"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.994">
            <gDNA_intron_boundary i_start="123617" i_stop="123318" i_length="300"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="123317" e_stop="123178" e_length="140"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="123177" i_stop="122960" i_length="218"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="122959" e_stop="122817" e_length="143"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127156" stop="126672"/>
              <exon start="125203" stop="125151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SSR125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127156" stop="126672"/>
              <exon start="125203" stop="125151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SSR570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125155" stop="125125"/>
              <exon start="124886" stop="124822"/>
              <exon start="123957" stop="123858"/>
              <exon start="123779" stop="123738"/>
              <exon start="123659" stop="123618"/>
              <exon start="123317" stop="123178"/>
              <exon start="122959" stop="122817"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="P58" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCCATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTCTTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAAGAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGAAGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAA : TATGCTCAAAACACTTGATAGGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAG : CAAAGCAGCTATAGGGAATACTTGAAACTCAAAGCCAAATATGAGTCGCTGCAGCGATATCAAAG : ACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTGAAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGG : ACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAG : GAGAAATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAG : ATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTGAGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGG : GTACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGAAAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTA</gDNA_template>
            <first_frame> K  Q  I  L  K  L  K  Q  *  I  P  K  E  D  R  K  K  C  H  R  *  K  Q  P  M  F  T  F  S  L  S  K  H  *  N  S  T  K  T  K  N  K  S  *  *  E  S  F  L  S  F  F  V  C  V  C  V  *  L  G  F  A  F  L  S  Q  F  W  L  F  Q  *  E  R  K  E  D  L  R  V  S  Q  E  K  K  L  V  R  K  *  S  R  K  R  S  S  E  E  G  G  M  G  R  G  R  V  E  L  K  R  I  E  N  K  I  N  R  Q  V  T  F  A  K  R  R  N  G  L  L  K  K  A  Y  E  L  S  V  L  C  D  A  E  V  A  L  L  V  F  S  N  R  G  K  L  Y  E  F  C  S  T  N  N :   M  L  K  T  L  D  R  Y  Q  K  C  S  Y  G  T  L  E  V  N  R  S  I  K  D  N  E  :  Q  S  S  Y  R  E  Y  L  K  L  K  A  K  Y  E  S  L  Q  R  Y  Q  R :   H  L  L  G  D  E  L  G  P  L  T  I  D  D  L  E  H  L  E  V  Q  L  D  T  S  L  K  H  I  R  S  T  R  :  T  Q  M  M  L  D  Q  L  S  D  L  Q  T  K  :  E  K  L  W  N  E  A  N  K  V  L  E  R  K  :  M  E  E  I  Y  A  E  N  N  M  Q  Q  A  W  G  G  G  E  Q  S  L  N  Y  G  Q  Q  Q  H  P  Q  S  Q  G  F  F  Q  P  L  E  C  N  S  S  L  Q  I  G :   Y  D  P  I  T  T  S  S  Q  I  T  A  V  T  N  A  Q  N  V  N  G  M  I  P  G  W  M  L  *  M  K  K  S  F  I  F  S  F  A  *  K  H  M  K  Y  I  S  </first_frame>
            <second_frame>  S  K  S  *  S  *  N  N  E  S  L  K  K  I  G  R  N  A  I  D  K  N  N  P  C  S  L  F  L  S  L  N  I  E  I  Q  P  K  Q  K  T  K  V  D  K  N  P  F  F  L  S  L  C  V  C  V  S  S  *  G  L  H  F  F  H  N  F  G  C  F  S  R  R  E  K  R  I  *  E  L  A  K  R  R  N  *  *  E  N  K  V  E  K  D  H  Q  R  K  E  G  W  V  E  E  E  L  S  *  R  G  *  K  T  R  *  I  D  K  S  L  L  Q  R  G  E  M  D  C  S  K  K  L  M  N  Y  L  C  F  V  M  L  K  L  L  Y  S  F  S  L  I  V  E  N  S  M  N  S  A  A  Q  T   : I  C  S  K  H  L  I  G  T  K  S  A  A  M  E  H  W  K  S  I  D  Q  S  K  I  M  S :   K  A  A  I  G  N  T  *  N  S  K  P  N  M  S  R  C  S  D  I  K   : D  T  F  L  E  M  S  W  G  L  *  L  *  M  I  L  S  I  L  K  S  N  *  I  L  P  S  N  T  L  G  P  P  G :   H  K  *  C  L  I  S  F  L  I  F  K  L  R :   R  N  C  G  M  R  L  T  R  F  L  K  E  R :   W  K  K  Y  M  L  K  T  T  C  N  K  H  G  V  V  V  S  K  V  S  I  M  V  S  S  N  I  L  N  L  R  V  S  S  N  L  *  S  A  T  L  P  C  K  L   : G  T  I  Q  *  Q  L  Q  A  K  *  Q  Q  *  Q  M  P  K  T  *  M  V  *  Y  L  V  G  C  C  E  *  K  S  P  L  S  S  A  L  H  K  S  I  *  S  I  F  L </second_frame>
            <third_frame>   A  N  P  K  V  K  T  M  N  P  *  R  R  *  E  E  M  P  *  I  K  T  T  H  V  H  F  F  S  L  *  T  L  K  F  N  Q  N  K  K  Q  K  L  I  R  I  L  S  F  F  L  C  V  C  V  C  L  A  R  V  C  I  S  F  T  I  L  V  V  S  V  G  E  K  R  G  S  K  S  *  P  R  E  E  I  S  E  K  I  K  *  K  K  I  I  R  G  R  R  D  G  *  R  K  S  *  A  E  E  D  R  K  Q  D  K  *  T  S  H  F  C  K  E  E  K  W  I  A  Q  K  S  L  *  T  I  C  A  L  *  C  *  S  C  S  T  R  F  L  *  S  W  K  T  L  *  I  L  Q  H  K  Q  :  Y  A  Q  N  T  *  *  V  P  K  V  Q  L  W  N  I  G  S  Q  S  I  N  Q  R  *  *   : A  K  Q  L  *  G  I  L  E  T  Q  S  Q  I  *  V  A  A  A  I  S  K  :  T  P  S  W  R  *  V  G  A  S  D  Y  R  *  S  *  A  S  *  S  P  T  R  Y  F  P  Q  T  H  *  V  H  Q   : D  T  N  D  A  *  S  A  F  *  S  S  N  *   : G  E  I  V  E  *  G  *  Q  G  S  *  K  K   : D  G  R  N  I  C  *  K  Q  H  A  T  S  M  G  W  W  *  A  K  S  Q  L  W  S  A  A  T  S  S  I  S  G  F  L  P  T  S  R  V  Q  L  F  L  A  N  W  :  V  R  S  N  N  N  F  K  P  N  N  S  S  N  K  C  P  K  R  E  W  Y  D  T  W  L  D  A  V  N  E  K  V  L  Y  L  Q  L  C  I  K  A  Y  E  V  Y  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0046M08.3" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126886" stop="126672"/>
                    <exon start="125203" stop="125125"/>
                    <exon start="124886" stop="124822"/>
                    <exon start="123957" stop="123858"/>
                    <exon start="123779" stop="123738"/>
                    <exon start="123659" stop="123618"/>
                    <exon start="123317" stop="123178"/>
                    <exon start="122959" stop="122872"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRKRSSEEGGMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALLVFSNRGKLYEFCSTNNMLKTLDRYQKCSYGTLEVNRSIKDNEQSSYREYLKLKAKYESLQRYQRHLLGDELGPLTIDDLEHLEVQLDTSLKHIRSTRTQMMLDQLSDLQTKEKLWNEANKVLERKMEEIYAENNMQQAWGGGEQSLNYGQQQHPQSQGFFQPLECNSSLQIGYDPITTSSQITAVTNAQNVNGMIPGWML*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="124839" PGL_stop="125372"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="124839" e_stop="125372"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="124839" e_stop="125372" e_length="534"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124839" stop="125372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG354-R" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124839" stop="125363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG354-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGACTCATATTTGGCTTTGAGTTTCAAGTATTCCCTATAGCTGCTTTGCTGCAATGGCTCACAAGATGGATCAATAACTTGAAAAGGGTCTATATATATAAAAAAAAAAATTCTTCCTTTATTTGCGAAAAAAATTCGATCAGAAAAAATTGTGATCGAGCAGCATTCGATCATGTCAGAAATTAAAGCAACTAACTTACATATAGTAAGTTATATTATGGTAAAAATCATACATACGTTCATCCTTTGAAAAGGTGACGTCAACGAAATTAGTAGCATTTGTTACCTCATTATCTTTGATTGATCGATTGACTTCCAATGTTCCATAGCTGCACTTTTGGTACCTATCAAGTGTTTTGAGCATACTGTTGCACAAGATAAATAAAAAGGAAAAAGTTATTAATACTCAAATGATTGGATTGAATCAAATATGAGCAAGTATAAATAAATATTCGATCCATCTTTATTTAACACGGATAAAAAAATGTGCTAGCTCGCAACTCTTTTTATTTTAAAAAAAAAAACATTTTGCCT</gDNA_template>
            <first_frame> R  L  I  F  G  F  E  F  Q  V  F  P  I  A  A  L  L  Q  W  L  T  R  W  I  N  N  L  K  R  V  Y  I  Y  K  K  K  N  S  S  F  I  C  E  K  N  S  I  R  K  N  C  D  R  A  A  F  D  H  V  R  N  *  S  N  *  L  T  Y  S  K  L  Y  Y  G  K  N  H  T  Y  V  H  P  L  K  R  *  R  Q  R  N  *  *  H  L  L  P  H  Y  L  *  L  I  D  *  L  P  M  F  H  S  C  T  F  G  T  Y  Q  V  F  *  A  Y  C  C  T  R  *  I  K  R  K  K  L  L  I  L  K  *  L  D  *  I  K  Y  E  Q  V  *  I  N  I  R  S  I  F  I  *  H  G  *  K  N  V  L  A  R  N  S  F  Y  F  K  K  K  N  I  L  P </first_frame>
            <second_frame>  D  S  Y  L  A  L  S  F  K  Y  S  L  *  L  L  C  C  N  G  S  Q  D  G  S  I  T  *  K  G  S  I  Y  I  K  K  K  I  L  P  L  F  A  K  K  I  R  S  E  K  I  V  I  E  Q  H  S  I  M  S  E  I  K  A  T  N  L  H  I  V  S  Y  I  M  V  K  I  I  H  T  F  I  L  *  K  G  D  V  N  E  I  S  S  I  C  Y  L  I  I  F  D  *  S  I  D  F  Q  C  S  I  A  A  L  L  V  P  I  K  C  F  E  H  T  V  A  Q  D  K  *  K  G  K  S  Y  *  Y  S  N  D  W  I  E  S  N  M  S  K  Y  K  *  I  F  D  P  S  L  F  N  T  D  K  K  M  C  *  L  A  T  L  F  I  L  K  K  K  T  F  C   </second_frame>
            <third_frame>   T  H  I  W  L  *  V  S  S  I  P  Y  S  C  F  A  A  M  A  H  K  M  D  Q  *  L  E  K  G  L  Y  I  *  K  K  K  F  F  L  Y  L  R  K  K  F  D  Q  K  K  L  *  S  S  S  I  R  S  C  Q  K  L  K  Q  L  T  Y  I  *  *  V  I  L  W  *  K  S  Y  I  R  S  S  F  E  K  V  T  S  T  K  L  V  A  F  V  T  S  L  S  L  I  D  R  L  T  S  N  V  P  *  L  H  F  W  Y  L  S  S  V  L  S  I  L  L  H  K  I  N  K  K  E  K  V  I  N  T  Q  M  I  G  L  N  Q  I  *  A  S  I  N  K  Y  S  I  H  L  Y  L  T  R  I  K  K  C  A  S  S  Q  L  F  L  F  *  K  K  K  H  F  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C02HBa0046M08.3"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 23 chains have been computed
$ 
$ memory statistics:
$ 24112 bytes spliced alignments in total
$ 12 spliced alignments have been stored
$ 2009 bytes was the average size of a spliced alignment
$ 13344 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 1906 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 23 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:37:23
-->
