<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 08:44:48"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T0266" ref_strand="+" ref_description="T0266">
      <seq>ttgattacattcaaaaacatggatatggtaattggaggactcttccaaagaatgctgggcttcaaagatgtggaaaaagttgtaggcttcgttggactaattatctaaggccagatattaaaagaggaagattttcatttgaagaagaggagactatcattcaactccacagtattttaggcaacaagtggtctgctattgctgcacgtttacctggtagaactgataatgaaatcaagaactattggaatacgcatatcaggaaaaggcttttgagaatggggattgatccagtgacacacagtccacgtcttgatcttcttgatctttcttccattttaaaccattcaatttacaataattcatctcatcatcaaatgaacctttcaagattgttaggccatgtgcaacctttggttaatcctgaactcttgagattagctacttctcttatatcatcccaacgccaaaacacaaacaactttttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="+" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="19309" stop="20648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19609" g_stop="19665" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19666" i_stop="19762" i_length="97">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19763" g_stop="19892" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="187" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19893" i_stop="20045" i_length="153">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20046" g_stop="20348" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="490" r_length="303" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="+" ref_id="T0266" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="+"/>
        <rDNA rDNA_id="T0266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19609" e_stop="19665"/>
          <exon e_start="19763" e_stop="19892"/>
          <exon e_start="20046" e_stop="20348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTACATTCAAAAACATGGATATGGTAATTGGAGGACTCTTCCAAAGAATGCTGGTATTTATTTTTCTTCTTACTATACTATTTTCTTGTATTAATTTATACTTTTTTTTAAGTTGTATTATTAATGCTTTAATGTGTGTGTATATTTTAGGGCTTCAAAGATGTGGAAAAAGTTGTAGGCTTCGTTGGACTAATTATCTAAGGCCAGATATTAAAAGAGGAAGATTTTCATTTGAAGAAGAGGAGACTATCATTCAACTCCACAGTATTTTAGGCAACAAGTAAGTTTATTTATTTTATTTATTATTAATGGGGTCGTAATAATATAGTACTCATTTTTTCTCCATAGGTTTGGACTTTTTTATCAATGTATTTTGTCATGTTCCTTAGAGATTGAAACTAATTTGTCATGTGTTTCTTTTTTTTTGATTCAGGTGGTCTGCTATTGCTGCACGTTTACCTGGTAGAACTGATAATGAAATCAAGAACTATTGGAATACGCATATCAGGAAAAGGCTTTTGAGAATGGGGATTGATCCAGTGACACACAGTCCACGTCTTGATCTTCTTGATCTTTCTTCCATTTTAAACCATTCAATTTACAATAATTCATCTCATCATCAAATGAACCTTTCAAGATTGTTAGGCCATGTGCAACCTTTGGTTAATCCTGAACTCTTGAGATTAGCTACTTCTCTTATATCATCCCAACGCCAAAACACAAACAACTTTTTAAT</genome_strand>
        <mrna_strand>TTGATTACATTCAAAAACATGGATATGGTAATTGGAGGACTCTTCCAAAGAATGCTG.................................................................................................GGCTTCAAAGATGTGGAAAAAGTTGTAGGCTTCGTTGGACTAATTATCTAAGGCCAGATATTAAAAGAGGAAGATTTTCATTTGAAGAAGAGGAGACTATCATTCAACTCCACAGTATTTTAGGCAACAA.........................................................................................................................................................GTGGTCTGCTATTGCTGCACGTTTACCTGGTAGAACTGATAATGAAATCAAGAACTATTGGAATACGCATATCAGGAAAAGGCTTTTGAGAATGGGGATTGATCCAGTGACACACAGTCCACGTCTTGATCTTCTTGATCTTTCTTCCATTTTAAACCATTCAATTTACAATAATTCATCTCATCATCAAATGAACCTTTCAAGATTGTTAGGCCATGTGCAACCTTTGGTTAATCCTGAACTCTTGAGATTAGCTACTTCTCTTATATCATCCCAACGCCAAAACACAAACAACTTTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At4g05150" ref_strand="+" ref_description="C2_At4g05150">
      <seq>tggaagccacgtctttgaaagaaagagctaccctaaagacatgaataaatgaccccccccccccccctaaaggccaaaatttcagcacaattaattgtcttctagtcttgagacatcaaagagttacaagtctccatcatagcgatgagtgggtctattcacgcgccgccagagttcgactccggcaacggcgattcagtagcctccacgcctcgctcggagcaccaccaccacatgtatgatgacaccaccgctacacagccacgtgcccgtttcatgtgcagcttcggtggcaaaattatgctcaggccacacgacaatcaactccgttacgtcggcggcgatactcgaattgttgcggtgaaccgccacactaccttcgcagctctcctcgggaaactctccaaactcgtcggatatccaaacattaacatcaagtaccagctccctaacgaggaactggacgctttgataaccgtcacaaccgatgaagatttggagaatatgatggaagagtacgatcggctcacgcagaatcagaaatcagctcggcttcggctcttccttttccctaacgattctggttccagagccagcactatcagctccatcctcgacggctcatctaagcgagagcaatggtttgttgacgctctcaatggtggcgccggtccgggtctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="+" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="82804" stop="85824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83104" g_stop="83172" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.899"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83173" i_stop="83290" i_length="118">
            <donor d_prob="0.995" d_score="0.85"/>
            <acceptor a_prob="0.907" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83291" g_stop="83359" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="140" r_length="68" r_score="0.870"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="83360" i_stop="84979" i_length="1620">
            <donor d_prob="0.994" d_score="0.88"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84980" g_stop="85524" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="682" r_length="542" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="+" ref_id="C2_At4g05150" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="+"/>
        <rDNA rDNA_id="C2_At4g05150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83104" e_stop="83172"/>
          <exon e_start="83291" e_stop="83359"/>
          <exon e_start="84980" e_stop="85524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAGCCACGTCTTTGAAAGAAAGAGCTACACTAAAGACATGAATAAATGA---CCCCCCCCCCCCTAAAGGTCTCAATTTTTCCTTTTTATTAGCTCCACTATACCTTACATCTCTTCATCTCTAACTCCACCATTATATTTCTTTCTTTCTTTCCAACAAACATTTCATCACTTTCTTCTTTTGCAGTCCAAAATTGCATCACAATTAATACTCTTTTAAATCTTGAGACACCAAAGAGTTACAAGTCTCCATCATGTAAGTTATTAAAAAACTTCTATTTGGTTAAATGCTTTCGTTTTATTTCTTCTTGATTAATCTTCTATATTTTATGAGATAACTAATTCTTTCGATTCAATTCGATTATATGATTTTTTTAGTATACTTTTATCTATCGCAACCCTTATGCTTGGGAATTAAAGTCATTGATTATAGTCATTTGATCCTCATTCTTTTTGAGATTTGAATTGGAAATCAAGAAAAATATAATTAAGAACTTGAAGTAACGTGACAAATGAATTCTTTGTTTTTGTCAGTTTTTTTTTTTTTTGGTTCCTAGAGAGAAAGAAAAAATATATTAAAATAAAGGACATAAAAACTTTTTAAGTACATATATTCCAAATGTTTGCCTACCTTTGGCAACAGAATATAACATTATTCGTAACGTCAAACGTGGCCCTGGAAACCTGGCAGCTACAAGACATCGATGACCACCTCTTTTTTCTTCCATCGATTCTCCTTCCTTTAAATCTTATCTATTTGATAGATTCTAATGAAAATCACTTCAGTTGTTAGGCTATAATATTATTTCTTAATCGGAAATTTTGAATCGCGAGAATGTAAACCTTTTGAAGAGCTAATTTACAGCACGTGAATGTATGCGTTGAAAGTGGAAAAAAGGAATTTAAGTTATTTATAAAAATTGTTGATGTAAATAAATTTTACATTATCAATGATCTTACAAAAAAATTACCTAATCTTCATACAAAACAAAAAATTGAAATTACGTAAAAATCAATGAGGTAGAAGGAATAGGGGGAATCTTTTGAGTGGAGCCAATTAATAAACTGGAATATATGCTCCCAGCCTAATCATGTGATTGTCTTTTACTGATAATTTTATTAGGGGATTAATTAGAGCCTATCCTCGTGTTAAATGGCTTAATCTAATCCGAGGACGTGCTGGCTTAATCTACACTTTTAATAGGCATATTTCTATTTTTGTCTGCTCTTAATTTTTTAAACAAGGAATTAAGCATAGTTTATTAGCACCATGTTAATTATGGCAAGTTGACAACGGCTGATATCATCATTACGAAGCTTTCAGCTAACACCTAATTTTGATTTACTTAATGGCTTTATTAAAAATAGCTTCTACTAAAATTACTCTAAAGAGATTGGTTTTCTTTCCCCTTTTTAAAAAAAGTCTAATCTAATGCGACATTGTTGAGGACGGTGACTCATTATTCAGCTTTACGAAAAATATATGAATTTAATTTTACTCTTATTATAATATATAAAATAAACTTTTCACAATATATATATATATATGTATAACTAAAGCGAAGAAGAGATAACAAAATACAATAGAAAAATTTAAAAATATTTATTTGAATCGAATATTTACACCAATTCAAGTATGTCATATATTTAAATTTATTATTTATTTTATTTTTATTTAAATTAATTAACATTTGTAGTATTTTGTTAAGTTATATGATTTTTTATTATGATAAAATTCAGTATAAATTCTTCATAATTTCGATCTTTTTTCCATCACAATTTCTCTTGAAGGCTACTATTACACCTTCAGTGTAACAGGACCAGTAACACTACGTAACAAACAGACTAACAGTCACTTTTTCATTTTCACTTGCAGAGCGATGAGTGGGTCTATTCACGCGCCGCCAGAGTTCGACTCCGGCAACGGCGATTCAGTAGCCTCCACACCTCGCTCGGAGCACCACCACCACCACATGTATGATGACACCACCGCTACACAGCCACGTGCCCGTTTCATGTGCAGCTTCGGTGGCAAAATTGTGCTCAGGCCACACGACAATCAACTTCGTTACGTCGGCGGCGATACTCGAATTGTTGCGGTGAACCGCCACACTACCTTCGCAGCTCTCCTTGGAAAACTCTCCAAACTCATCGGATATCCAAACATTAACATCAAGTACCAGCTTCCTAACGAGGAACTGGATGCTTTGATAACCGTCACAACCGATGAAGATTTGGAGAATATGATGGAAGAGTACGATCGGCTTACGCAGAATCAGAAATCGGCTCGGCTTCGTCTCTTCCTTTTCCCTAACGATTCTGGTTCCAGAGCCAGCACTATCAGCTCCATCCTCGACGGCTCATCTAAGCGAGAGCAATGGTTTGTTGACGCTCTCAATGGTGGCGCCGGTCCGGGTCTGG</genome_strand>
        <mrna_strand>TGGAAGCCACGTCTTTGAAAGAAAGAGCTACCCTAAAGACATGAATAAATGACCCCCCCCCCCCCCCTAAAG......................................................................................................................GCCAAAATTTCAGCACAATTAATTGTCTTCT-AGTCTTGAGACATCAAAGAGTTACAAGTCTCCATCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGATGAGTGGGTCTATTCACGCGCCGCCAGAGTTCGACTCCGGCAACGGCGATTCAGTAGCCTCCACGCCTCGCTCGGAG---CACCACCACCACATGTATGATGACACCACCGCTACACAGCCACGTGCCCGTTTCATGTGCAGCTTCGGTGGCAAAATTATGCTCAGGCCACACGACAATCAACTCCGTTACGTCGGCGGCGATACTCGAATTGTTGCGGTGAACCGCCACACTACCTTCGCAGCTCTCCTCGGGAAACTCTCCAAACTCGTCGGATATCCAAACATTAACATCAAGTACCAGCTCCCTAACGAGGAACTGGACGCTTTGATAACCGTCACAACCGATGAAGATTTGGAGAATATGATGGAAGAGTACGATCGGCTCACGCAGAATCAGAAATCAGCTCGGCTTCGGCTCTTCCTTTTCCCTAACGATTCTGGTTCCAGAGCCAGCACTATCAGCTCCATCCTCGACGGCTCATCTAAGCGAGAGCAATGGTTTGTTGACGCTCTCAATGGTGGCGCCGGTCCGGGTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At1g11290" ref_strand="+" ref_description="C2_At1g11290">
      <seq>ccaggactcaatgtctatggtgcaatgttgggagcttgcaagattcacaaaaatgttgatttgggggagaaggcagcagacaagctatttgagctagatcccgatgatggtggatatcatgtgcttcttgctaatatgtacgccacggcttcaatatggcataaagttgctaacgtcagaactatgatggagagaaaaggtattcaaaagacacctggatggagtctagttgatttaagaaacgaggtccacacattctactcaggaagcactagccatcctcagtcagagaagatctatgcttaccttgagaaactgtttgataggattaaagctgctggatatatacctgatactgattcaattcacgatgtggaagatgttgttcaggagcaattgctaaagagccacagtgagaagcttgctattgcatttgggcttttaaatacaagtgctggtacaactgttcacatcaggaaaaatctccgggtttgtggtgactgccatagtgcaacaaagtacatctcgcttgtcatgaaacgagaaattattgtacgtgatatgcaccgtttccaccattttaaggatggagtctgttcatgtggagattactggtgatctgaatgattgataactctaccaagttgttagctcatgttaattatgtaaaacattttattattctgatatagaataaccacaccacatgggtatctggaacaaaggtgggaaagtgacgactgatgtggaactgatttctctaactggttaaaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="97112" stop="95735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96812" g_stop="96035" g_length="778"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="777" r_length="777" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="C2_At1g11290" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="C2_At1g11290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96812" e_stop="96035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGGACTCAATGTCTATGGTGCAATGTTGGGAGCTTGCAAGATTCACAAAAATGTAGATTTGGGGGAGAAGGCAGCAGACAAACTATTTGAGCTAGATCCCGATGATGGTGGATATCATGTGCTTCTTGCTAATATGTACGCCAGGGCTTCAATATGGCATAAAGTTGCTAATGTCAGAACTATGATGGAGAGAAAAGGTATTCAAAAGACACCTGGATGGAGTCTAGTTGATTTAAGAAACGAGGTCCACACATTCTACTCAGGAAGCACTAGCCATCCTCAGTCAGAGAAGATCTATGCTTACCTTGAGAAACTGTTTGATAGGATTAAAGCTGCTGGATATATACCTGATACTGATTCAATTCACGATGTGGAAGATGTTGTTCAGGAGCAACTGCTAAAGAGCCACAGTGAGAAGCTTGCTATTGTATTTGGTCTTTTAAATACGAGTGCTGGTACAACTATTCACATCAGGAAAAATCTCCGGGTTTGTGGTGACTGCCATACTGCAACAAAGTACATCTCGCTTGTCATGAAACGAGAAATTATTGTACGTGATATGCACCGTTTCCACCATTTTAAGGATGGAGTCTGTTCATGTGGAGATTACTGGTGATATGAATGA-T--T-ACTCTACCAAGTTGTTACCTCAT-TTAACTATGTAAAACATTTTATTATTCTGATATAGAATAACCACACCACATGGATGCACCATATCTAGCACAAAGGT-CGAGAGTCACGATTGAGGTGAAACTGATTTCTCTAACTGGTTAAAAGCT</genome_strand>
        <mrna_strand>CCAGGACTCAATGTCTATGGTGCAATGTTGGGAGCTTGCAAGATTCACAAAAATGTTGATTTGGGGGAGAAGGCAGCAGACAAGCTATTTGAGCTAGATCCCGATGATGGTGGATATCATGTGCTTCTTGCTAATATGTACGCCACGGCTTCAATATGGCATAAAGTTGCTAACGTCAGAACTATGATGGAGAGAAAAGGTATTCAAAAGACACCTGGATGGAGTCTAGTTGATTTAAGAAACGAGGTCCACACATTCTACTCAGGAAGCACTAGCCATCCTCAGTCAGAGAAGATCTATGCTTACCTTGAGAAACTGTTTGATAGGATTAAAGCTGCTGGATATATACCTGATACTGATTCAATTCACGATGTGGAAGATGTTGTTCAGGAGCAATTGCTAAAGAGCCACAGTGAGAAGCTTGCTATTGCATTTGGGCTTTTAAATACAAGTGCTGGTACAACTGTTCACATCAGGAAAAATCTCCGGGTTTGTGGTGACTGCCATAGTGCAACAAAGTACATCTCGCTTGTCATGAAACGAGAAATTATTGTACGTGATATGCACCGTTTCCACCATTTTAAGGATGGAGTCTGTTCATGTGGAGATTACTGGTGATCTGAATGATTGATAACTCTACCAAGTTGTTAGCTCATGTTAATTATGTAAAACATTTTATTATTCTGATATAGAATAACCACACCACATGG--G-----TATCTGGAACAAAGGTGGGAAAGTGACGACTGATGTGGAACTGATTTCTCTAACTGGTTAAAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T1224" ref_strand="+" ref_description="T1224">
      <seq>acgatcatgagggaagaatacaacttggagccttcaatggaccattatggggcaatggttgacctaattggtcgagctggtcggctgagtgaggcttggaacttcattgataatatgcctaccagaccaggactcaatgtctatggtgcaatgttgggagcttgcaagattcacaaaaatgtagaattgggggagaaggcagcagacaaactatttgagctagatcccgatgatggtggatatcatgtgcttcttgctaatatgtacgccacggcttcaatatggcataaagttgctaatgtcagaactatgatggagagaaaaggtattcaaaagacacctggatggagtctagttgatttaagaaacgaggtccacacattctactcaggaagcactagccatcctcagtcagagaagatctatgcttaccttgagaaactgtttgataggattaaagctgctggatatatacctgatactaattcaattcacgatgtggaagatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="97238" stop="96128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96938" g_stop="96428" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="T1224" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="T1224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96938" e_stop="96428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGATCATGAGGGAAGAATACAACTTGGAGCCTTCAATGGACCATTATGGGGCAATGGTTGACCTAATTGGTCGAGCTGGTCGGCTGAGTGAGGCTTGGAACTTCATTGATAATATGCCTACCAGACCAGGACTCAATGTCTATGGTGCAATGTTGGGAGCTTGCAAGATTCACAAAAATGTAGATTTGGGGGAGAAGGCAGCAGACAAACTATTTGAGCTAGATCCCGATGATGGTGGATATCATGTGCTTCTTGCTAATATGTACGCCAGGGCTTCAATATGGCATAAAGTTGCTAATGTCAGAACTATGATGGAGAGAAAAGGTATTCAAAAGACACCTGGATGGAGTCTAGTTGATTTAAGAAACGAGGTCCACACATTCTACTCAGGAAGCACTAGCCATCCTCAGTCAGAGAAGATCTATGCTTACCTTGAGAAACTGTTTGATAGGATTAAAGCTGCTGGATATATACCTGATACTGATTCAATTCACGATGTGGAAGATGTTG</genome_strand>
        <mrna_strand>ACGATCATGAGGGAAGAATACAACTTGGAGCCTTCAATGGACCATTATGGGGCAATGGTTGACCTAATTGGTCGAGCTGGTCGGCTGAGTGAGGCTTGGAACTTCATTGATAATATGCCTACCAGACCAGGACTCAATGTCTATGGTGCAATGTTGGGAGCTTGCAAGATTCACAAAAATGTAGAATTGGGGGAGAAGGCAGCAGACAAACTATTTGAGCTAGATCCCGATGATGGTGGATATCATGTGCTTCTTGCTAATATGTACGCCACGGCTTCAATATGGCATAAAGTTGCTAATGTCAGAACTATGATGGAGAGAAAAGGTATTCAAAAGACACCTGGATGGAGTCTAGTTGATTTAAGAAACGAGGTCCACACATTCTACTCAGGAAGCACTAGCCATCCTCAGTCAGAGAAGATCTATGCTTACCTTGAGAAACTGTTTGATAGGATTAAAGCTGCTGGATATATACCTGATACTAATTCAATTCACGATGTGGAAGATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At1g11380" ref_strand="+" ref_description="C2_At1g11380">
      <seq>acaaagaagcactgctttttatatgttggtggtgcttttataatcttagttggagtatatatgggttatcaccgcacaaaaatgagaaacaagttcaatatcagaggtgatagttctttggatgattgcatcttccatttaacctgtccatgctgcaccttatctcaggaagctagaacattagagatgaacaatgtccaagatggcatatggcatggtagaggtgataccatatgcgtaggaagttattctgaacttggcaagactccatttgaactaagtccgcctgctattgtgtcaacaaagtcctgaaccataactctgcagagggcttaggacacaaaaaagaatgacaatacgggtagctgttaattctagagtagagcatccttcacattgttctctcccatgaaaagccaagcctacaagcgcggtccagaattagcaacatgctttttacagaatggaagaatttcattaaacttgcccatacatacaaagggtagaatctcgtataggttatggcatgctagctaaggcacagaatgccggctgttttttggaagcaaagcattttccagcgtcaaagtggcaaaatgcttcagaaagatgtgcttccaattttaaaaatgtattgcaaataggaaacttgcaagcaatgttgtatatatatatattttatatatgtaataataagcaaatgcttccaaaaagaaatgagggaggcagttgcgtattaataacatagttgaagttcgttttttttttaggaatagcacaagctttcgtatgtaaatattcaatttgagtcaaagaatgaagagattctacttgtctcgtgaactaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="100825" stop="98746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100525" g_stop="100421" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100420" i_stop="100046" i_length="375">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100045" g_stop="99983" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="168" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99982" i_stop="99755" i_length="228">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99754" g_stop="99046" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="848" r_length="680" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="C2_At1g11380" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="1.034" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="C2_At1g11380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100525" e_stop="100421"/>
          <exon e_start="100045" e_stop="99983"/>
          <exon e_start="99754" e_stop="99046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGAAGCACTGCTTTTTATATGTTGGTGGTGCTTTTATAATATTAGTTGGAGTATATATGGGTTATCACCGCACAAAAATGAGAAACAAGTTCAATATCAGAGTGAGTACTTTCATCCCTATTTTCGCTTTTACTGCTACTTTTCAGTTCTTCCTATTTGATCATATTCCAAGAGTTGCACAAACTATTTGTGGGAATTGGTTATATTATCGTATAGCTTGTTATCTTTCTCTAGTTTTAGCAATGATTTCTCTGCATTCCAGTTTTTACAAATAACAATCTATCTTTGGTTTTCCCTTCTTAACCTACCCTCTTTATTGGTTTTTACATTCTCATATCTTCTCTTGTATTTTGAGCTACTGAAACACTGATGAGTGTTAACAATTATGGGAGGACAATAGTATTAATTTTACTTGCATCTATTATTGTTCTTCTTTAACTGTTGTGATAACTCTTGCTCTTTTTATGCTTCTTTAGGGTGATAGTTCTTTGGATGATTGCATCTTCCATTTGACCTGTCCGTGCTGCACCTTATCTCAGGTTCGTTCTATTATTCAACCTGCATTAATTAACAACAAAGTAGTGTTTATTTGCCTTGTCGCGTGAAGTTGCTTGCTGCTTTTTCTCTCACCCCTCAGTCCCCAGGGGAAGAGCGAATAGGTTGACTCAGAAAAACACCAATCTAACAGGACCTGCAGTTTTTGAAGTTAGATGACACAGTTTGCTTTATTATTCGGTTTTGAATTTTTTTTTTGTTTTATTGAACAGGAAGCTAGAACATTAGAGATGAACAATGTCCAAGATGGCATTTGGCATGGTAGAGGTGATACCATATGCGTAGGAAGTTATTCTGAACCTGGCAGGACCCCATTTGAACTAAGTCCGCCTGCTGTTGTGTCAACAAAGTCCTGAACCATGAACTCTACAGAGGGCTTAGGACACAAAAAGGAATGACAATACGGGGTTAGCAGTTAATTCTAGAGTAGAGCATCCTTCACATTGTTCTCTACCTTGAAAAGCCAAGCCTACAAGCGCGGTCCTGAATTAGCAACATTCTTTTTCCAGAACAGAAGAATCTCATTAGACTTGCCCATTCATGATACAAACAAGGGTAGAATCGCGTATAGGTTATGGCATGCAAGCTAAGGCACAGAATGCCGGCTGTTTTTTAGGAAGCAAGGCATTTTCCAGTGTCAAAGTGGCAAAATGCTTCAGAAAGATGTGCTTCCAATTTAAAAAATGTATTGCAAATAGGAAACTTGCAAGCAATGTTGTATATTATATATATATATATATATATATATATATGTAATAATAAGCAAATGCTTCCAAAAAAGAAATGCGGGAAGCAGTTGCATATTAATAACATAGTTGAAGTGCGCGTTTTAGATTTTAAGAAGAGCAAAAGCACAAGCTTTCATATGTAAATATTCAA-TT--GTCATAGAATGAAGAGATTCTACTCGTCTCGTGAACTAAA</genome_strand>
        <mrna_strand>ACAAAGAAGCACTGCTTTTTATATGTTGGTGGTGCTTTTATAATCTTAGTTGGAGTATATATGGGTTATCACCGCACAAAAATGAGAAACAAGTTCAATATCAGA.......................................................................................................................................................................................................................................................................................................................................................................................GGTGATAGTTCTTTGGATGATTGCATCTTCCATTTAACCTGTCCATGCTGCACCTTATCTCAG....................................................................................................................................................................................................................................GAAGCTAGAACATTAGAGATGAACAATGTCCAAGATGGCATATGGCATGGTAGAGGTGATACCATATGCGTAGGAAGTTATTCTGAACTTGGCAAGACTCCATTTGAACTAAGTCCGCCTGCTATTGTGTCAACAAAGTCCTGAACCAT-AACTCTGCAGAGGGCTTAGGACACAAAAAAGAATGACAATAC-GGG-TAGCTGTTAATTCTAGAGTAGAGCATCCTTCACATTGTTCTCTCCCATGAAAAGCCAAGCCTACAAGCGCGGTCCAGAATTAGCAACATGCTTTTTACAGAATGGAAGAATTTCATTAAACTTGCCCA-T-A-CATAC--A-AAGGGTAGAATCTCGTATAGGTTATGGCATGCTAGCTAAGGCACAGAATGCCGGCTGTTTTTT-GGAAGCAAAGCATTTTCCAGCGTCAAAGTGGCAAAATGCTTCAGAAAGATGTGCTTCCAATTTTAAAAATGTATTGCAAATAGGAAACTTGCAAGCAATGTTG---------TATATATATATAT-T-T-TATATATGTAATAATAAGCAAATGCTTCC-AAAAAGAAATGAGGGAGGCAGTTGCGTATTAATAACATAGTTGAAGT--TCGTTTT---TTTT--TTAG-G-AATAGCACAAGCTTTCGTATGTAAATATTCAATTTGAGTCAAAGAATGAAGAGATTCTACTTGTCTCGTGAACTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At1g61620" ref_strand="+" ref_description="C2_At1g61620">
      <seq>caaaaatagtcttcaaaattcagctgaattacaattagggttttgaaagatgccgcagagacactcgaagaacaacaacgatctcgccttctttacctacgatgagaagcgaaagttagggtacggaacacaaaaggagaggctgggaaaagattcaattaagccgttcgatgcttgttccctttgcttaaaacccttcatcgatccgttgtgttgccagaaagggcatgtcttttgcaaagaatgcattctagaatgccttttgtcccagaaaaaggatatccaaagaaagttagctgctcatactggtcagcagaagcaagaaaaagaagaggaagaggagaggttgatgctgcagaaagccagggagcttgatgcatttgatcaacaaaatcatggcccagttccgcagtacaatgataagaactacaacagagacaagaatggattccatggggccaacagcgtgaaggccacttcttatgaggaagaagcacttagaaccatgaaagcattttggctgccctctgcaacaccagatgcacctgctaaggtggaagccccatccacaagcacaacttgtcctgaagggagggaaaaaattaagatgaaaaaccttttccctatacactttactgaagatacaagtgcacagaagaaacacaagtctcttgacaagagtttcatatgccccagttgcaaggtcacactgaccaatacattgtcacttgtggcacttaatacttgtggacatgtcttctgcaagaaatgtgcagagaaatttgtggctgttgacaaggtttgcgtggtctgtgacaaaccatgtaaagatagaaatctggtgaatgtggaaaagggaggaacagggtttgctgcacatggagataatcttgaagcaaaagacttcaaacacttggggagtggaagtggtttgggcctggtgaggcctgccatgaagacgtaacttgctgtataccagtttgctcattagagatagtggggctttgttacggtgtattgtaatatggttatatcatcttctaccctgaaaactgtgttttcttacatcgtctttattcaactacagctctgcgaaagcaacttttatcctttccaattcacaagtgttatttcattagataattgtttgaaacttgttcctcaagtggttgctgctgctgctatcgatagttttgctgctacttttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="108910" stop="105620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108608" g_stop="108323" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108322" i_stop="106812" i_length="1511">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106811" g_stop="105923" g_length="889"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="1177" r_length="889" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="C2_At1g61620" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>1175</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="C2_At1g61620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108608" e_stop="108323"/>
          <exon e_start="106811" e_stop="105923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATTCGTCTTCCAAATTCATGTG-ATTGC-ATTAGGGTTTTGAAAGATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTACGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAGGTGCCTATTTTCTGTCCTTATGCATACTCTCTCAATTGGTCTTTTGTAGATTTGAAAGAAAATGATATTATATATGAACTGCCGAGTTTTTTTCTATGTTTAAGGTGCGTTTTGTATGAAATTATATGTCTTGGTGCTTAGATCCTGTGGTTAGCTTGATTTACTTTGTTGTTGTGTCCAGGTTTGTAAGATTGTGCTTGTGAATTATATTTCAGCTATAAGAGAAACTGACAATATCTGTGGTTCTTAATGGGGGAGTGATATATGGGGGTTGGCTGTAAGTTAAATTTTCTGTCTAGATTGGTATGAGGAATTCAGAGATGTCCTTCTGATTCAGTGAGGCTAGTAGTTTGGAAGGATACCGCAGAAGTTTCGAAATTTAGCAACTACGAGAGTACGATGGCCATAGCTAGTGCTTTCATCTGTTTGACACCAAAACAGAGAATATCTTAGTGATTAAGAGACTCCTATATTATGTCCTTAATATAGGTTTAGCTGGATTAGATTGAGTTGTATGATGTCTGCAGTTGTAGGCTGGTCTTATGATTCAGTGCATCTTGAAGAGAACCTATTGGATATATTTTAGTCTCTGTTGTGGTTGTGAAATGCCCTCCTAACACGCCATATAATCTAATGGATTTTGGTTTAGAGGCAAATCTATCCTAGAACTTATGGATAGGATACTTGACTTGCAAACTGTACTTTGTAGGCTGTAGTCCCAAGGTTAAACAGAAGAACTATCTGTGTTCAATTCTTCTTATGAGGCTAGAGTCTCCTGCACTTTCTAACGGCAATAATTTGGTGACTTGTTTAGTTTTAAGAAGGGTGCTGTCATTTTTCAGCATCTTCTTTAATGCTATTCTTTACTATTACCAAAATACAAATATCCAAGTACCACAACTATGACTAAATCCAAGCAGGGGAGTAGGCTATATGAATTCTCACGATCCATGTCACCTTCCTAAGTTCATCTCAGTCCGATACTAATAAGCAAATCAAAAAAGAAAAAGAAAGAGGGTACCACTGAATTTTCATGAACCACACTTTAATGTTTGCCTTCTATTATTATAATGATACTAATATTATACAAGCCAAAATGATCTCCAATCTCCAAGTCCAGTTATTGTGTCCCATAAAGTAGTGGATGAAAGGAGTATTATTTAGACTAGCTAATAAAGAGGCCTTCATACTGTCTTATGGAATACTTGTTTTGGAATCCCTTTCAAGTGAAAACTGCAGCCTTTCTGAGTAATAGTTACTTATTCTTAAGTTGCAATGCATGTTGTTAGTTACTTCTATTAACAAAACAGTTGCCCGTGTTCCACCTCGAAGGAGTAGTACTGACCAATATATGTTCCAATCTTGCTTCATGCCTGCATTTCTCTGGAAAAAGAGAAAAGGGCAGTGTGGAGTGTAAGAAAGGGGGTGGGGATTTGGTAACATTCTTGTTTGTTAACTTAGAATCATCCTTCGTGAAGTTTTATTTGACAAGCTGTTATTTTTTCTTGCAGAAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGATCTTGATGCATTTGATCAACAAAATCATGGTCCAGTTCCGCAGTACAATGATAAGAACTACAACAGAGACAAAAATGGATTCCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAGCACTTAGAACCATGAAAGCATTTTGGCTGCCCTCTGCAACACCAGATGCACCTGCTAAGGTGGAAGCCCCATCCACTAGCACAACTTGTCCTGAAGGGAGGGAAAAAATTAAGATGAAAAACCTTTTCCCTATACACTTCACTGAAGATACAAGTGCACAGAAGAAACACAAGTCTCTTGACAAGAGTTTCATATGTCCCAGTTGCAAGGTCACACTAACCAATACTTTGTCACTTGTAGCACTTAATACTTGTGGACATGTCTTCTGCAAGAAATGTGCAGAAAAATTTGTGGCTGTTGACAAGGTTTGCGTGGTCTGTGACAAACCATGTAAAAATAGAAATCTGGTGAATGTGGAAAAGGGAGGAACAGGGTTTGCTGCCCATGGAGATAATCTTGAAGCAAAAGACTTCAAACACTTGGGGAGTGGAAGTGGTTTGGGCCTGGTGAGGCCTGCCATGAAGACGTAACTTGCTGTATACCAGTTTGCTTATTAGAGATAGTGGGGCTTTG-TATGGTGTGTTGTAATATGG-TATATCATCTTCTACCCTGAAAACTGAGTATTTTCTTGTATCGTCTTTATTTAACTGCAGCTCCGCGAAAGCAACTTATATCCTTTCCAATTCACTAGTAATATTTCATTCTATAATTGTTTGAAACTTGTTCCTCAAGTGGTTGCTGCT</genome_strand>
        <mrna_strand>CAAAAATAGTCTTCAAAATTCAGCTGAATTACAATTAGGGTTTTGAAAGATGCCGCAGAGACACTCGAAGAACAACAACGATCTCGCCTTCTTTACCTACGATGAGAAGCGAAAGTTAGGGTACGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATTAAGCCGTTCGATGCTTGTTCCCTTTGCTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTAGCTGCTCATACTGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGAGCTTGATGCATTTGATCAACAAAATCATGGCCCAGTTCCGCAGTACAATGATAAGAACTACAACAGAGACAAGAATGGATTCCATGGGGCCAACAGCGTGAAGGCCACTTCTTATGAGGAAGAAGCACTTAGAACCATGAAAGCATTTTGGCTGCCCTCTGCAACACCAGATGCACCTGCTAAGGTGGAAGCCCCATCCACAAGCACAACTTGTCCTGAAGGGAGGGAAAAAATTAAGATGAAAAACCTTTTCCCTATACACTTTACTGAAGATACAAGTGCACAGAAGAAACACAAGTCTCTTGACAAGAGTTTCATATGCCCCAGTTGCAAGGTCACACTGACCAATACATTGTCACTTGTGGCACTTAATACTTGTGGACATGTCTTCTGCAAGAAATGTGCAGAGAAATTTGTGGCTGTTGACAAGGTTTGCGTGGTCTGTGACAAACCATGTAAAGATAGAAATCTGGTGAATGTGGAAAAGGGAGGAACAGGGTTTGCTGCACATGGAGATAATCTTGAAGCAAAAGACTTCAAACACTTGGGGAGTGGAAGTGGTTTGGGCCTGGTGAGGCCTGCCATGAAGACGTAACTTGCTGTATACCAGTTTGCTCATTAGAGATAGTGGGGCTTTGTTACGGTGTATTGTAATATGGTTATATCATCTTCTACCCTGAAAACT--GTGTTTTCTTACATCGTCTTTATTCAACTACAGCTCTGCGAAAGCAACTTTTATCCTTTCCAATTCACAAGTGTTATTTCATTAGATAATTGTTTGAAACTTGTTCCTCAAGTGGTTGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T1077" ref_strand="+" ref_description="T1077">
      <seq>gatccacttcatagggtttttcttcttccccaaattcataaaattcgtcttccaaattcatgtgattgcattagggttttgaaagatgccgcagagacactcgaagaacaacaacgatcttgccttctttacgtacgatgagaagagaaagttagggtatggaacacaaaaggagaggctgggaaaagattcaatcaagccattcgatgcttgttccctttgtttaaaacccttcatcgatccgttgtgttgccagaaagggcatgtcttttgcaaagaatgcattctagaatgccttttgtcccagaaaaaggatatccaaagaaagttagctgctcatacaggtcagcagaagcaagaaaaagaagaggaagaggagaggttgatgctgcagaaagccagggatcttgatgcatttgatcaacaaaatcatggtccagttccgcagtccaatgataagaactacaacagagacaaaaatggattccatggagctaacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C02HBa0059M17-NPFXm/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C02HBa0059M17.3" temp_strand="-" temp_description="C02HBa0059M17.3  AC215371.2 htgs_phase:3 submitted_to_sgn_as:C02HBa0059M17 sequenced_by:kribb upload_account_name:korea">
        <position start="108945" stop="106334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108646" g_stop="108323" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108322" i_stop="106812" i_length="1511">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106811" g_stop="106634" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="502" r_length="178" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C02HBa0059M17.3" gen_strand="-" ref_id="T1077" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C02HBa0059M17.3" gen_strand="-"/>
        <rDNA rDNA_id="T1077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108646" e_stop="108323"/>
          <exon e_start="106811" e_stop="106634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCACTTCATAGGGTTTTTCTTCTTCCCCAAATTCATAAAATTCGTCTTCCAAATTCATGTGATTGCATTAGGGTTTTGAAAGATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTACGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAGGTGCCTATTTTCTGTCCTTATGCATACTCTCTCAATTGGTCTTTTGTAGATTTGAAAGAAAATGATATTATATATGAACTGCCGAGTTTTTTTCTATGTTTAAGGTGCGTTTTGTATGAAATTATATGTCTTGGTGCTTAGATCCTGTGGTTAGCTTGATTTACTTTGTTGTTGTGTCCAGGTTTGTAAGATTGTGCTTGTGAATTATATTTCAGCTATAAGAGAAACTGACAATATCTGTGGTTCTTAATGGGGGAGTGATATATGGGGGTTGGCTGTAAGTTAAATTTTCTGTCTAGATTGGTATGAGGAATTCAGAGATGTCCTTCTGATTCAGTGAGGCTAGTAGTTTGGAAGGATACCGCAGAAGTTTCGAAATTTAGCAACTACGAGAGTACGATGGCCATAGCTAGTGCTTTCATCTGTTTGACACCAAAACAGAGAATATCTTAGTGATTAAGAGACTCCTATATTATGTCCTTAATATAGGTTTAGCTGGATTAGATTGAGTTGTATGATGTCTGCAGTTGTAGGCTGGTCTTATGATTCAGTGCATCTTGAAGAGAACCTATTGGATATATTTTAGTCTCTGTTGTGGTTGTGAAATGCCCTCCTAACACGCCATATAATCTAATGGATTTTGGTTTAGAGGCAAATCTATCCTAGAACTTATGGATAGGATACTTGACTTGCAAACTGTACTTTGTAGGCTGTAGTCCCAAGGTTAAACAGAAGAACTATCTGTGTTCAATTCTTCTTATGAGGCTAGAGTCTCCTGCACTTTCTAACGGCAATAATTTGGTGACTTGTTTAGTTTTAAGAAGGGTGCTGTCATTTTTCAGCATCTTCTTTAATGCTATTCTTTACTATTACCAAAATACAAATATCCAAGTACCACAACTATGACTAAATCCAAGCAGGGGAGTAGGCTATATGAATTCTCACGATCCATGTCACCTTCCTAAGTTCATCTCAGTCCGATACTAATAAGCAAATCAAAAAAGAAAAAGAAAGAGGGTACCACTGAATTTTCATGAACCACACTTTAATGTTTGCCTTCTATTATTATAATGATACTAATATTATACAAGCCAAAATGATCTCCAATCTCCAAGTCCAGTTATTGTGTCCCATAAAGTAGTGGATGAAAGGAGTATTATTTAGACTAGCTAATAAAGAGGCCTTCATACTGTCTTATGGAATACTTGTTTTGGAATCCCTTTCAAGTGAAAACTGCAGCCTTTCTGAGTAATAGTTACTTATTCTTAAGTTGCAATGCATGTTGTTAGTTACTTCTATTAACAAAACAGTTGCCCGTGTTCCACCTCGAAGGAGTAGTACTGACCAATATATGTTCCAATCTTGCTTCATGCCTGCATTTCTCTGGAAAAAGAGAAAAGGGCAGTGTGGAGTGTAAGAAAGGGGGTGGGGATTTGGTAACATTCTTGTTTGTTAACTTAGAATCATCCTTCGTGAAGTTTTATTTGACAAGCTGTTATTTTTTCTTGCAGAAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGATCTTGATGCATTTGATCAACAAAATCATGGTCCAGTTCCGCAGTACAATGATAAGAACTACAACAGAGACAAAAATGGATTCCATGGAGCTAACAGT</genome_strand>
        <mrna_strand>GATCCACTTCATAGGGTTTTTCTTCTTCCCCAAATTCATAAAATTCGTCTTCCAAATTCATGTGATTGCATTAGGGTTTTGAAAGATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTACGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGATCTTGATGCATTTGATCAACAAAATCATGGTCCAGTTCCGCAGTCCAATGATAAGAACTACAACAGAGACAAAAATGGATTCCATGGAGCTAACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>7</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="19609" PGL_stop="20348"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19609" e_stop="19665"/>
            <exon e_start="19763" e_stop="19892"/>
            <exon e_start="20046" e_stop="20348"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="19609" e_stop="19665" e_length="57"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="19666" i_stop="19762" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19763" e_stop="19892" e_length="130"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="19893" i_stop="20045" i_length="153"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20046" e_stop="20348" e_length="303"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19609" stop="19665"/>
              <exon start="19763" stop="19892"/>
              <exon start="20046" stop="20348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T0266" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGATTACATTCAAAAACATGGATATGGTAATTGGAGGACTCTTCCAAAGAATGCTG : GGCTTCAAAGATGTGGAAAAAGTTGTAGGCTTCGTTGGACTAATTATCTAAGGCCAGATATTAAAAGAGGAAGATTTTCATTTGAAGAAGAGGAGACTATCATTCAACTCCACAGTATTTTAGGCAACAA : GTGGTCTGCTATTGCTGCACGTTTACCTGGTAGAACTGATAATGAAATCAAGAACTATTGGAATACGCATATCAGGAAAAGGCTTTTGAGAATGGGGATTGATCCAGTGACACACAGTCCACGTCTTGATCTTCTTGATCTTTCTTCCATTTTAAACCATTCAATTTACAATAATTCATCTCATCATCAAATGAACCTTTCAAGATTGTTAGGCCATGTGCAACCTTTGGTTAATCCTGAACTCTTGAGATTAGCTACTTCTCTTATATCATCCCAACGCCAAAACACAAACAACTTTTTAAT</gDNA_template>
            <first_frame> L  I  T  F  K  N  M  D  M  V  I  G  G  L  F  Q  R  M  L  :  G  F  K  D  V  E  K  V  V  G  F  V  G  L  I  I  *  G  Q  I  L  K  E  E  D  F  H  L  K  K  R  R  L  S  F  N  S  T  V  F  *  A  T   : S  G  L  L  L  L  H  V  Y  L  V  E  L  I  M  K  S  R  T  I  G  I  R  I  S  G  K  G  F  *  E  W  G  L  I  Q  *  H  T  V  H  V  L  I  F  L  I  F  L  P  F  *  T  I  Q  F  T  I  I  H  L  I  I  K  *  T  F  Q  D  C  *  A  M  C  N  L  W  L  I  L  N  S  *  D  *  L  L  L  L  Y  H  P  N  A  K  T  Q  T  T  F  *  </first_frame>
            <second_frame>  *  L  H  S  K  T  W  I  W  *  L  E  D  S  S  K  E  C  W :   A  S  K  M  W  K  K  L  *  A  S  L  D  *  L  S  K  A  R  Y  *  K  R  K  I  F  I  *  R  R  G  D  Y  H  S  T  P  Q  Y  F  R  Q  Q  :  V  V  C  Y  C  C  T  F  T  W  *  N  *  *  *  N  Q  E  L  L  E  Y  A  Y  Q  E  K  A  F  E  N  G  D  *  S  S  D  T  Q  S  T  S  *  S  S  *  S  F  F  H  F  K  P  F  N  L  Q  *  F  I  S  S  S  N  E  P  F  K  I  V  R  P  C  A  T  F  G  *  S  *  T  L  E  I  S  Y  F  S  Y  I  I  P  T  P  K  H  K  Q  L  F  N </second_frame>
            <third_frame>   D  Y  I  Q  K  H  G  Y  G  N  W  R  T  L  P  K  N  A   : G  L  Q  R  C  G  K  S  C  R  L  R  W  T  N  Y  L  R  P  D  I  K  R  G  R  F  S  F  E  E  E  E  T  I  I  Q  L  H  S  I  L  G  N  K :   W  S  A  I  A  A  R  L  P  G  R  T  D  N  E  I  K  N  Y  W  N  T  H  I  R  K  R  L  L  R  M  G  I  D  P  V  T  H  S  P  R  L  D  L  L  D  L  S  S  I  L  N  H  S  I  Y  N  N  S  S  H  H  Q  M  N  L  S  R  L  L  G  H  V  Q  P  L  V  N  P  E  L  L  R  L  A  T  S  L  I  S  S  Q  R  Q  N  T  N  N  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19611" stop="19665"/>
                    <exon start="19763" stop="19892"/>
                    <exon start="20046" stop="20346"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>486</number_coding_nucleotides>
                  <number_encoded_amino_acids>162</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLSSILNHSIYNNSSHHQMNLSRLLGHVQPLVNPELLRLATSLISSQRQNTNNFL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="83104" PGL_stop="85524"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83104" e_stop="83172"/>
            <exon e_start="83291" e_stop="83359"/>
            <exon e_start="84980" e_stop="85524"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.907" e_score="0.899"/>
          <exon-intron don_prob="0.994" acc_prob="0.965" e_score="0.870"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.899">
            <gDNA_exon_boundary e_start="83104" e_stop="83172" e_length="69"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.907">
            <gDNA_intron_boundary i_start="83173" i_stop="83290" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="0.870">
            <gDNA_exon_boundary e_start="83291" e_stop="83359" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.965">
            <gDNA_intron_boundary i_start="83360" i_stop="84979" i_length="1620"/>
          </intron>
          <exon e_serial="3" e_score="0.974">
            <gDNA_exon_boundary e_start="84980" e_stop="85524" e_length="545"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83104" stop="83172"/>
              <exon start="83291" stop="83359"/>
              <exon start="84980" stop="85524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At4g05150" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGAAGCCACGTCTTTGAAAGAAAGAGCTACACTAAAGACATGAATAAATGACCCCCCCCCCCCTAAAG : TCCAAAATTGCATCACAATTAATACTCTTTTAAATCTTGAGACACCAAAGAGTTACAAGTCTCCATCAT : AGCGATGAGTGGGTCTATTCACGCGCCGCCAGAGTTCGACTCCGGCAACGGCGATTCAGTAGCCTCCACACCTCGCTCGGAGCACCACCACCACCACATGTATGATGACACCACCGCTACACAGCCACGTGCCCGTTTCATGTGCAGCTTCGGTGGCAAAATTGTGCTCAGGCCACACGACAATCAACTTCGTTACGTCGGCGGCGATACTCGAATTGTTGCGGTGAACCGCCACACTACCTTCGCAGCTCTCCTTGGAAAACTCTCCAAACTCATCGGATATCCAAACATTAACATCAAGTACCAGCTTCCTAACGAGGAACTGGATGCTTTGATAACCGTCACAACCGATGAAGATTTGGAGAATATGATGGAAGAGTACGATCGGCTTACGCAGAATCAGAAATCGGCTCGGCTTCGTCTCTTCCTTTTCCCTAACGATTCTGGTTCCAGAGCCAGCACTATCAGCTCCATCCTCGACGGCTCATCTAAGCGAGAGCAATGGTTTGTTGACGCTCTCAATGGTGGCGCCGGTCCGGGTCTGG</gDNA_template>
            <first_frame> W  K  P  R  L  *  K  K  E  L  H  *  R  H  E  *  M  T  P  P  P  L  K  :  S  K  I  A  S  Q  L  I  L  F  *  I  L  R  H  Q  R  V  T  S  L  H  H  :  S  D  E  W  V  Y  S  R  A  A  R  V  R  L  R  Q  R  R  F  S  S  L  H  T  S  L  G  A  P  P  P  P  H  V  *  *  H  H  R  Y  T  A  T  C  P  F  H  V  Q  L  R  W  Q  N  C  A  Q  A  T  R  Q  S  T  S  L  R  R  R  R  Y  S  N  C  C  G  E  P  P  H  Y  L  R  S  S  P  W  K  T  L  Q  T  H  R  I  S  K  H  *  H  Q  V  P  A  S  *  R  G  T  G  C  F  D  N  R  H  N  R  *  R  F  G  E  Y  D  G  R  V  R  S  A  Y  A  E  S  E  I  G  S  A  S  S  L  P  F  P  *  R  F  W  F  Q  S  Q  H  Y  Q  L  H  P  R  R  L  I  *  A  R  A  M  V  C  *  R  S  Q  W  W  R  R  S  G  S   </first_frame>
            <second_frame>  G  S  H  V  F  E  R  K  S  Y  T  K  D  M  N  K  *  P  P  P  P  *  S :   P  K  L  H  H  N  *  Y  S  F  K  S  *  D  T  K  E  L  Q  V  S  I  I :   A  M  S  G  S  I  H  A  P  P  E  F  D  S  G  N  G  D  S  V  A  S  T  P  R  S  E  H  H  H  H  H  M  Y  D  D  T  T  A  T  Q  P  R  A  R  F  M  C  S  F  G  G  K  I  V  L  R  P  H  D  N  Q  L  R  Y  V  G  G  D  T  R  I  V  A  V  N  R  H  T  T  F  A  A  L  L  G  K  L  S  K  L  I  G  Y  P  N  I  N  I  K  Y  Q  L  P  N  E  E  L  D  A  L  I  T  V  T  T  D  E  D  L  E  N  M  M  E  E  Y  D  R  L  T  Q  N  Q  K  S  A  R  L  R  L  F  L  F  P  N  D  S  G  S  R  A  S  T  I  S  S  I  L  D  G  S  S  K  R  E  Q  W  F  V  D  A  L  N  G  G  A  G  P  G  L  </second_frame>
            <third_frame>   E  A  T  S  L  K  E  R  A  T  L  K  T  *  I  N  D  P  P  P  P  K   : V  Q  N  C  I  T  I  N  T  L  L  N  L  E  T  P  K  S  Y  K  S  P  S   : *  R  *  V  G  L  F  T  R  R  Q  S  S  T  P  A  T  A  I  Q  *  P  P  H  L  A  R  S  T  T  T  T  T  C  M  M  T  P  P  L  H  S  H  V  P  V  S  C  A  A  S  V  A  K  L  C  S  G  H  T  T  I  N  F  V  T  S  A  A  I  L  E  L  L  R  *  T  A  T  L  P  S  Q  L  S  L  E  N  S  P  N  S  S  D  I  Q  T  L  T  S  S  T  S  F  L  T  R  N  W  M  L  *  *  P  S  Q  P  M  K  I  W  R  I  *  W  K  S  T  I  G  L  R  R  I  R  N  R  L  G  F  V  S  S  F  S  L  T  I  L  V  P  E  P  A  L  S  A  P  S  S  T  A  H  L  S  E  S  N  G  L  L  T  L  S  M  V  A  P  V  R  V  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83331" stop="83359"/>
                    <exon start="84980" stop="85523"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DTKELQVSIIAMSGSIHAPPEFDSGNGDSVASTPRSEHHHHHMYDDTTATQPRARFMCSFGGKIVLRPHDNQLRYVGGDTRIVAVNRHTTFAALLGKLSKLIGYPNINIKYQLPNEELDALITVTTDEDLENMMEEYDRLTQNQKSARLRLFLFPNDSGSRASTISSILDGSSKREQWFVDALNGGAGPGL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="96938" PGL_stop="96035"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96938" e_stop="96035"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="96938" e_stop="96035" e_length="904"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96938" stop="96428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T1224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96812" stop="96035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At1g11290" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGATCATGAGGGAAGAATACAACTTGGAGCCTTCAATGGACCATTATGGGGCAATGGTTGACCTAATTGGTCGAGCTGGTCGGCTGAGTGAGGCTTGGAACTTCATTGATAATATGCCTACCAGACCAGGACTCAATGTCTATGGTGCAATGTTGGGAGCTTGCAAGATTCACAAAAATGTAGATTTGGGGGAGAAGGCAGCAGACAAACTATTTGAGCTAGATCCCGATGATGGTGGATATCATGTGCTTCTTGCTAATATGTACGCCAGGGCTTCAATATGGCATAAAGTTGCTAATGTCAGAACTATGATGGAGAGAAAAGGTATTCAAAAGACACCTGGATGGAGTCTAGTTGATTTAAGAAACGAGGTCCACACATTCTACTCAGGAAGCACTAGCCATCCTCAGTCAGAGAAGATCTATGCTTACCTTGAGAAACTGTTTGATAGGATTAAAGCTGCTGGATATATACCTGATACTGATTCAATTCACGATGTGGAAGATGTTGTTCAGGAGCAACTGCTAAAGAGCCACAGTGAGAAGCTTGCTATTGTATTTGGTCTTTTAAATACGAGTGCTGGTACAACTATTCACATCAGGAAAAATCTCCGGGTTTGTGGTGACTGCCATACTGCAACAAAGTACATCTCGCTTGTCATGAAACGAGAAATTATTGTACGTGATATGCACCGTTTCCACCATTTTAAGGATGGAGTCTGTTCATGTGGAGATTACTGGTGATATGAATGATTACTCTACCAAGTTGTTACCTCATTTAACTATGTAAAACATTTTATTATTCTGATATAGAATAACCACACCACATGGATGCACCATATCTAGCACAAAGGTCGAGAGTCACGATTGAGGTGAAACTGATTTCTCTAACTGGTTAAAAGCT</gDNA_template>
            <first_frame> T  I  M  R  E  E  Y  N  L  E  P  S  M  D  H  Y  G  A  M  V  D  L  I  G  R  A  G  R  L  S  E  A  W  N  F  I  D  N  M  P  T  R  P  G  L  N  V  Y  G  A  M  L  G  A  C  K  I  H  K  N  V  D  L  G  E  K  A  A  D  K  L  F  E  L  D  P  D  D  G  G  Y  H  V  L  L  A  N  M  Y  A  R  A  S  I  W  H  K  V  A  N  V  R  T  M  M  E  R  K  G  I  Q  K  T  P  G  W  S  L  V  D  L  R  N  E  V  H  T  F  Y  S  G  S  T  S  H  P  Q  S  E  K  I  Y  A  Y  L  E  K  L  F  D  R  I  K  A  A  G  Y  I  P  D  T  D  S  I  H  D  V  E  D  V  V  Q  E  Q  L  L  K  S  H  S  E  K  L  A  I  V  F  G  L  L  N  T  S  A  G  T  T  I  H  I  R  K  N  L  R  V  C  G  D  C  H  T  A  T  K  Y  I  S  L  V  M  K  R  E  I  I  V  R  D  M  H  R  F  H  H  F  K  D  G  V  C  S  C  G  D  Y  W  *  Y  E  *  L  L  Y  Q  V  V  T  S  F  N  Y  V  K  H  F  I  I  L  I  *  N  N  H  T  T  W  M  H  H  I  *  H  K  G  R  E  S  R  L  R  *  N  *  F  L  *  L  V  K  S  </first_frame>
            <second_frame>  R  S  *  G  K  N  T  T  W  S  L  Q  W  T  I  M  G  Q  W  L  T  *  L  V  E  L  V  G  *  V  R  L  G  T  S  L  I  I  C  L  P  D  Q  D  S  M  S  M  V  Q  C  W  E  L  A  R  F  T  K  M  *  I  W  G  R  R  Q  Q  T  N  Y  L  S  *  I  P  M  M  V  D  I  M  C  F  L  L  I  C  T  P  G  L  Q  Y  G  I  K  L  L  M  S  E  L  *  W  R  E  K  V  F  K  R  H  L  D  G  V  *  L  I  *  E  T  R  S  T  H  S  T  Q  E  A  L  A  I  L  S  Q  R  R  S  M  L  T  L  R  N  C  L  I  G  L  K  L  L  D  I  Y  L  I  L  I  Q  F  T  M  W  K  M  L  F  R  S  N  C  *  R  A  T  V  R  S  L  L  L  Y  L  V  F  *  I  R  V  L  V  Q  L  F  T  S  G  K  I  S  G  F  V  V  T  A  I  L  Q  Q  S  T  S  R  L  S  *  N  E  K  L  L  Y  V  I  C  T  V  S  T  I  L  R  M  E  S  V  H  V  E  I  T  G  D  M  N  D  Y  S  T  K  L  L  P  H  L  T  M  *  N  I  L  L  F  *  Y  R  I  T  T  P  H  G  C  T  I  S  S  T  K  V  E  S  H  D  *  G  E  T  D  F  S  N  W  L  K  A </second_frame>
            <third_frame>   D  H  E  G  R  I  Q  L  G  A  F  N  G  P  L  W  G  N  G  *  P  N  W  S  S  W  S  A  E  *  G  L  E  L  H  *  *  Y  A  Y  Q  T  R  T  Q  C  L  W  C  N  V  G  S  L  Q  D  S  Q  K  C  R  F  G  G  E  G  S  R  Q  T  I  *  A  R  S  R  *  W  W  I  S  C  A  S  C  *  Y  V  R  Q  G  F  N  M  A  *  S  C  *  C  Q  N  Y  D  G  E  K  R  Y  S  K  D  T  W  M  E  S  S  *  F  K  K  R  G  P  H  I  L  L  R  K  H  *  P  S  S  V  R  E  D  L  C  L  P  *  E  T  V  *  *  D  *  S  C  W  I  Y  T  *  Y  *  F  N  S  R  C  G  R  C  C  S  G  A  T  A  K  E  P  Q  *  E  A  C  Y  C  I  W  S  F  K  Y  E  C  W  Y  N  Y  S  H  Q  E  K  S  P  G  L  W  *  L  P  Y  C  N  K  V  H  L  A  C  H  E  T  R  N  Y  C  T  *  Y  A  P  F  P  P  F  *  G  W  S  L  F  M  W  R  L  L  V  I  *  M  I  T  L  P  S  C  Y  L  I  *  L  C  K  T  F  Y  Y  S  D  I  E  *  P  H  H  M  D  A  P  Y  L  A  Q  R  S  R  V  T  I  E  V  K  L  I  S  L  T  G  *  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96938" stop="96195"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>741</number_coding_nucleotides>
                  <number_encoded_amino_acids>247</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TIMREEYNLEPSMDHYGAMVDLIGRAGRLSEAWNFIDNMPTRPGLNVYGAMLGACKIHKNVDLGEKAADKLFELDPDDGGYHVLLANMYARASIWHKVANVRTMMERKGIQKTPGWSLVDLRNEVHTFYSGSTSHPQSEKIYAYLEKLFDRIKAAGYIPDTDSIHDVEDVVQEQLLKSHSEKLAIVFGLLNTSAGTTIHIRKNLRVCGDCHTATKYISLVMKREIIVRDMHRFHHFKDGVCSCGDYW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="100525" PGL_stop="99046"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100525" e_stop="100421"/>
            <exon e_start="100045" e_stop="99983"/>
            <exon e_start="99754" e_stop="99046"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.915" acc_prob="0.995" e_score="0.990"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.968"/>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="100525" e_stop="100421" e_length="105"/>
          </exon>
          <intron i_serial="1" don_prob="0.915" acc_prob="0.995">
            <gDNA_intron_boundary i_start="100420" i_stop="100046" i_length="375"/>
          </intron>
          <exon e_serial="2" e_score="0.968">
            <gDNA_exon_boundary e_start="100045" e_stop="99983" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="99982" i_stop="99755" i_length="228"/>
          </intron>
          <exon e_serial="3" e_score="0.900">
            <gDNA_exon_boundary e_start="99754" e_stop="99046" e_length="709"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100525" stop="100421"/>
              <exon start="100045" stop="99983"/>
              <exon start="99754" stop="99046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At1g11380" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAAGAAGCACTGCTTTTTATATGTTGGTGGTGCTTTTATAATATTAGTTGGAGTATATATGGGTTATCACCGCACAAAAATGAGAAACAAGTTCAATATCAGA : GGTGATAGTTCTTTGGATGATTGCATCTTCCATTTGACCTGTCCGTGCTGCACCTTATCTCAG : GAAGCTAGAACATTAGAGATGAACAATGTCCAAGATGGCATTTGGCATGGTAGAGGTGATACCATATGCGTAGGAAGTTATTCTGAACCTGGCAGGACCCCATTTGAACTAAGTCCGCCTGCTGTTGTGTCAACAAAGTCCTGAACCATGAACTCTACAGAGGGCTTAGGACACAAAAAGGAATGACAATACGGGGTTAGCAGTTAATTCTAGAGTAGAGCATCCTTCACATTGTTCTCTACCTTGAAAAGCCAAGCCTACAAGCGCGGTCCTGAATTAGCAACATTCTTTTTCCAGAACAGAAGAATCTCATTAGACTTGCCCATTCATGATACAAACAAGGGTAGAATCGCGTATAGGTTATGGCATGCAAGCTAAGGCACAGAATGCCGGCTGTTTTTTAGGAAGCAAGGCATTTTCCAGTGTCAAAGTGGCAAAATGCTTCAGAAAGATGTGCTTCCAATTTAAAAAATGTATTGCAAATAGGAAACTTGCAAGCAATGTTGTATATTATATATATATATATATATATATATATATGTAATAATAAGCAAATGCTTCCAAAAAAGAAATGCGGGAAGCAGTTGCATATTAATAACATAGTTGAAGTGCGCGTTTTAGATTTTAAGAAGAGCAAAAGCACAAGCTTTCATATGTAAATATTCAATTGTCATAGAATGAAGAGATTCTACTCGTCTCGTGAACTAAA</gDNA_template>
            <first_frame> T  K  K  H  C  F  L  Y  V  G  G  A  F  I  I  L  V  G  V  Y  M  G  Y  H  R  T  K  M  R  N  K  F  N  I  R  :  G  D  S  S  L  D  D  C  I  F  H  L  T  C  P  C  C  T  L  S  Q  :  E  A  R  T  L  E  M  N  N  V  Q  D  G  I  W  H  G  R  G  D  T  I  C  V  G  S  Y  S  E  P  G  R  T  P  F  E  L  S  P  P  A  V  V  S  T  K  S  *  T  M  N  S  T  E  G  L  G  H  K  K  E  *  Q  Y  G  V  S  S  *  F  *  S  R  A  S  F  T  L  F  S  T  L  K  S  Q  A  Y  K  R  G  P  E  L  A  T  F  F  F  Q  N  R  R  I  S  L  D  L  P  I  H  D  T  N  K  G  R  I  A  Y  R  L  W  H  A  S  *  G  T  E  C  R  L  F  F  R  K  Q  G  I  F  Q  C  Q  S  G  K  M  L  Q  K  D  V  L  P  I  *  K  M  Y  C  K  *  E  T  C  K  Q  C  C  I  L  Y  I  Y  I  Y  I  Y  I  Y  V  I  I  S  K  C  F  Q  K  R  N  A  G  S  S  C  I  L  I  T  *  L  K  C  A  F  *  I  L  R  R  A  K  A  Q  A  F  I  C  K  Y  S  I  V  I  E  *  R  D  S  T  R  L  V  N  *  </first_frame>
            <second_frame>  Q  R  S  T  A  F  Y  M  L  V  V  L  L  *  Y  *  L  E  Y  I  W  V  I  T  A  Q  K  *  E  T  S  S  I  S  E :   V  I  V  L  W  M  I  A  S  S  I  *  P  V  R  A  A  P  Y  L  R :   K  L  E  H  *  R  *  T  M  S  K  M  A  F  G  M  V  E  V  I  P  Y  A  *  E  V  I  L  N  L  A  G  P  H  L  N  *  V  R  L  L  L  C  Q  Q  S  P  E  P  *  T  L  Q  R  A  *  D  T  K  R  N  D  N  T  G  L  A  V  N  S  R  V  E  H  P  S  H  C  S  L  P  *  K  A  K  P  T  S  A  V  L  N  *  Q  H  S  F  S  R  T  E  E  S  H  *  T  C  P  F  M  I  Q  T  R  V  E  S  R  I  G  Y  G  M  Q  A  K  A  Q  N  A  G  C  F  L  G  S  K  A  F  S  S  V  K  V  A  K  C  F  R  K  M  C  F  Q  F  K  K  C  I  A  N  R  K  L  A  S  N  V  V  Y  Y  I  Y  I  Y  I  Y  I  Y  M  *  *  *  A  N  A  S  K  K  E  M  R  E  A  V  A  Y  *  *  H  S  *  S  A  R  F  R  F  *  E  E  Q  K  H  K  L  S  Y  V  N  I  Q  L  S  *  N  E  E  I  L  L  V  S  *  T  K </second_frame>
            <third_frame>   K  E  A  L  L  F  I  C  W  W  C  F  Y  N  I  S  W  S  I  Y  G  L  S  P  H  K  N  E  K  Q  V  Q  Y  Q   : R  *  *  F  F  G  *  L  H  L  P  F  D  L  S  V  L  H  L  I  S   : G  S  *  N  I  R  D  E  Q  C  P  R  W  H  L  A  W  *  R  *  Y  H  M  R  R  K  L  F  *  T  W  Q  D  P  I  *  T  K  S  A  C  C  C  V  N  K  V  L  N  H  E  L  Y  R  G  L  R  T  Q  K  G  M  T  I  R  G  *  Q  L  I  L  E  *  S  I  L  H  I  V  L  Y  L  E  K  P  S  L  Q  A  R  S  *  I  S  N  I  L  F  P  E  Q  K  N  L  I  R  L  A  H  S  *  Y  K  Q  G  *  N  R  V  *  V  M  A  C  K  L  R  H  R  M  P  A  V  F  *  E  A  R  H  F  P  V  S  K  W  Q  N  A  S  E  R  C  A  S  N  L  K  N  V  L  Q  I  G  N  L  Q  A  M  L  Y  I  I  Y  I  Y  I  Y  I  Y  I  C  N  N  K  Q  M  L  P  K  K  K  C  G  K  Q  L  H  I  N  N  I  V  E  V  R  V  L  D  F  K  K  S  K  S  T  S  F  H  M  *  I  F  N  C  H  R  M  K  R  F  Y  S  S  R  E  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100525" stop="100421"/>
                    <exon start="100045" stop="99983"/>
                    <exon start="99754" stop="99611"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TKKHCFLYVGGAFIILVGVYMGYHRTKMRNKFNIRGDSSLDDCIFHLTCPCCTLSQEARTLEMNNVQDGIWHGRGDTICVGSYSEPGRTPFELSPPAVVSTKS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99350" stop="99096"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EARHFPVSKWQNASERCASNLKNVLQIGNLQAMLYIIYIYIYIYICNNKQMLPKKKCGKQLHINNIVEVRVLDFKKSKSTSFHM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99438" stop="99211"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TCPFMIQTRVESRIGYGMQAKAQNAGCFLGSKAFSSVKVAKCFRKMCFQFKKCIANRKLASNVVYYIYIYIYIYM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="108646" PGL_stop="105923"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108646" e_stop="108323"/>
            <exon e_start="106811" e_stop="105923"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.977" e_score="0.997"/>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="108646" e_stop="108323" e_length="324"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.977">
            <gDNA_intron_boundary i_start="108322" i_stop="106812" i_length="1511"/>
          </intron>
          <exon e_serial="2" e_score="0.955">
            <gDNA_exon_boundary e_start="106811" e_stop="105923" e_length="889"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108646" stop="108323"/>
              <exon start="106811" stop="106634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T1077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108608" stop="108323"/>
              <exon start="106811" stop="105923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At1g61620" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCCACTTCATAGGGTTTTTCTTCTTCCCCAAATTCATAAAATTCGTCTTCCAAATTCATGTGATTGCATTAGGGTTTTGAAAGATGCCGCAGAGACACTCGAAGAACAACAACGATCTTGCCTTCTTTACGTACGATGAGAAGAGAAAGTTAGGGTATGGAACACAAAAGGAGAGGCTGGGAAAAGATTCAATCAAGCCATTCGATGCTTGTTCCCTTTGTTTAAAACCCTTCATCGATCCGTTGTGTTGCCAGAAAGGGCATGTCTTTTGCAAAGAATGCATTCTAGAATGCCTTTTGTCCCAGAAAAAGGATATCCAAAG : AAAGTTAGCTGCTCATACAGGTCAGCAGAAGCAAGAAAAAGAAGAGGAAGAGGAGAGGTTGATGCTGCAGAAAGCCAGGGATCTTGATGCATTTGATCAACAAAATCATGGTCCAGTTCCGCAGTACAATGATAAGAACTACAACAGAGACAAAAATGGATTCCATGGAGCTAACAGTGTGAAAGCTACTTCTTATGAGGAGGAAGCACTTAGAACCATGAAAGCATTTTGGCTGCCCTCTGCAACACCAGATGCACCTGCTAAGGTGGAAGCCCCATCCACTAGCACAACTTGTCCTGAAGGGAGGGAAAAAATTAAGATGAAAAACCTTTTCCCTATACACTTCACTGAAGATACAAGTGCACAGAAGAAACACAAGTCTCTTGACAAGAGTTTCATATGTCCCAGTTGCAAGGTCACACTAACCAATACTTTGTCACTTGTAGCACTTAATACTTGTGGACATGTCTTCTGCAAGAAATGTGCAGAAAAATTTGTGGCTGTTGACAAGGTTTGCGTGGTCTGTGACAAACCATGTAAAAATAGAAATCTGGTGAATGTGGAAAAGGGAGGAACAGGGTTTGCTGCCCATGGAGATAATCTTGAAGCAAAAGACTTCAAACACTTGGGGAGTGGAAGTGGTTTGGGCCTGGTGAGGCCTGCCATGAAGACGTAACTTGCTGTATACCAGTTTGCTTATTAGAGATAGTGGGGCTTTGTATGGTGTGTTGTAATATGGTATATCATCTTCTACCCTGAAAACTGAGTATTTTCTTGTATCGTCTTTATTTAACTGCAGCTCCGCGAAAGCAACTTATATCCTTTCCAATTCACTAGTAATATTTCATTCTATAATTGTTTGAAACTTGTTCCTCAAGTGGTTGCTGCT</gDNA_template>
            <first_frame> N  P  L  H  R  V  F  L  L  P  Q  I  H  K  I  R  L  P  N  S  C  D  C  I  R  V  L  K  D  A  A  E  T  L  E  E  Q  Q  R  S  C  L  L  Y  V  R  *  E  E  K  V  R  V  W  N  T  K  G  E  A  G  K  R  F  N  Q  A  I  R  C  L  F  P  L  F  K  T  L  H  R  S  V  V  L  P  E  R  A  C  L  L  Q  R  M  H  S  R  M  P  F  V  P  E  K  G  Y  P  K  :  K  V  S  C  S  Y  R  S  A  E  A  R  K  R  R  G  R  G  E  V  D  A  A  E  S  Q  G  S  *  C  I  *  S  T  K  S  W  S  S  S  A  V  Q  *  *  E  L  Q  Q  R  Q  K  W  I  P  W  S  *  Q  C  E  S  Y  F  L  *  G  G  S  T  *  N  H  E  S  I  L  A  A  L  C  N  T  R  C  T  C  *  G  G  S  P  I  H  *  H  N  L  S  *  R  E  G  K  N  *  D  E  K  P  F  P  Y  T  L  H  *  R  Y  K  C  T  E  E  T  Q  V  S  *  Q  E  F  H  M  S  Q  L  Q  G  H  T  N  Q  Y  F  V  T  C  S  T  *  Y  L  W  T  C  L  L  Q  E  M  C  R  K  I  C  G  C  *  Q  G  L  R  G  L  *  Q  T  M  *  K  *  K  S  G  E  C  G  K  G  R  N  R  V  C  C  P  W  R  *  S  *  S  K  R  L  Q  T  L  G  E  W  K  W  F  G  P  G  E  A  C  H  E  D  V  T  C  C  I  P  V  C  L  L  E  I  V  G  L  C  M  V  C  C  N  M  V  Y  H  L  L  P  *  K  L  S  I  F  L  Y  R  L  Y  L  T  A  A  P  R  K  Q  L  I  S  F  P  I  H  *  *  Y  F  I  L  *  L  F  E  T  C  S  S  S  G  C  C  </first_frame>
            <second_frame>  I  H  F  I  G  F  F  F  F  P  K  F  I  K  F  V  F  Q  I  H  V  I  A  L  G  F  *  K  M  P  Q  R  H  S  K  N  N  N  D  L  A  F  F  T  Y  D  E  K  R  K  L  G  Y  G  T  Q  K  E  R  L  G  K  D  S  I  K  P  F  D  A  C  S  L  C  L  K  P  F  I  D  P  L  C  C  Q  K  G  H  V  F  C  K  E  C  I  L  E  C  L  L  S  Q  K  K  D  I  Q  R :   K  L  A  A  H  T  G  Q  Q  K  Q  E  K  E  E  E  E  E  R  L  M  L  Q  K  A  R  D  L  D  A  F  D  Q  Q  N  H  G  P  V  P  Q  Y  N  D  K  N  Y  N  R  D  K  N  G  F  H  G  A  N  S  V  K  A  T  S  Y  E  E  E  A  L  R  T  M  K  A  F  W  L  P  S  A  T  P  D  A  P  A  K  V  E  A  P  S  T  S  T  T  C  P  E  G  R  E  K  I  K  M  K  N  L  F  P  I  H  F  T  E  D  T  S  A  Q  K  K  H  K  S  L  D  K  S  F  I  C  P  S  C  K  V  T  L  T  N  T  L  S  L  V  A  L  N  T  C  G  H  V  F  C  K  K  C  A  E  K  F  V  A  V  D  K  V  C  V  V  C  D  K  P  C  K  N  R  N  L  V  N  V  E  K  G  G  T  G  F  A  A  H  G  D  N  L  E  A  K  D  F  K  H  L  G  S  G  S  G  L  G  L  V  R  P  A  M  K  T  *  L  A  V  Y  Q  F  A  Y  *  R  *  W  G  F  V  W  C  V  V  I  W  Y  I  I  F  Y  P  E  N  *  V  F  S  C  I  V  F  I  *  L  Q  L  R  E  S  N  L  Y  P  F  Q  F  T  S  N  I  S  F  Y  N  C  L  K  L  V  P  Q  V  V  A  A </second_frame>
            <third_frame>   S  T  S  *  G  F  S  S  S  P  N  S  *  N  S  S  S  K  F  M  *  L  H  *  G  F  E  R  C  R  R  D  T  R  R  T  T  T  I  L  P  S  L  R  T  M  R  R  E  S  *  G  M  E  H  K  R  R  G  W  E  K  I  Q  S  S  H  S  M  L  V  P  F  V  *  N  P  S  S  I  R  C  V  A  R  K  G  M  S  F  A  K  N  A  F  *  N  A  F  C  P  R  K  R  I  S  K   : E  S  *  L  L  I  Q  V  S  R  S  K  K  K  K  R  K  R  R  G  *  C  C  R  K  P  G  I  L  M  H  L  I  N  K  I  M  V  Q  F  R  S  T  M  I  R  T  T  T  E  T  K  M  D  S  M  E  L  T  V  *  K  L  L  L  M  R  R  K  H  L  E  P  *  K  H  F  G  C  P  L  Q  H  Q  M  H  L  L  R  W  K  P  H  P  L  A  Q  L  V  L  K  G  G  K  K  L  R  *  K  T  F  S  L  Y  T  S  L  K  I  Q  V  H  R  R  N  T  S  L  L  T  R  V  S  Y  V  P  V  A  R  S  H  *  P  I  L  C  H  L  *  H  L  I  L  V  D  M  S  S  A  R  N  V  Q  K  N  L  W  L  L  T  R  F  A  W  S  V  T  N  H  V  K  I  E  I  W  *  M  W  K  R  E  E  Q  G  L  L  P  M  E  I  I  L  K  Q  K  T  S  N  T  W  G  V  E  V  V  W  A  W  *  G  L  P  *  R  R  N  L  L  Y  T  S  L  L  I  R  D  S  G  A  L  Y  G  V  L  *  Y  G  I  S  S  S  T  L  K  T  E  Y  F  L  V  S  S  L  F  N  C  S  S  A  K  A  T  Y  I  L  S  N  S  L  V  I  F  H  S  I  I  V  *  N  L  F  L  K  W  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C02HBa0059M17.3" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108564" stop="108323"/>
                    <exon start="106811" stop="106136"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>915</number_coding_nucleotides>
                  <number_encoded_amino_acids>305</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMPQRHSKNNNDLAFFTYDEKRKLGYGTQKERLGKDSIKPFDACSLCLKPFIDPLCCQKGHVFCKECILECLLSQKKDIQRKLAAHTGQQKQEKEEEEERLMLQKARDLDAFDQQNHGPVPQYNDKNYNRDKNGFHGANSVKATSYEEEALRTMKAFWLPSATPDAPAKVEAPSTSTTCPEGREKIKMKNLFPIHFTEDTSAQKKHKSLDKSFICPSCKVTLTNTLSLVALNTCGHVFCKKCAEKFVAVDKVCVVCDKPCKNRNLVNVEKGGTGFAAHGDNLEAKDFKHLGSGSGLGLVRPAMKT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 14 chains have been computed
$ 
$ memory statistics:
$ 15992 bytes spliced alignments in total
$ 7 spliced alignments have been stored
$ 2284 bytes was the average size of a spliced alignment
$ 10456 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2091 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 14 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 08:44:51
-->
